96 results on '"Rubinstein, Y."'
Search Results
2. ON THE RICCI ITERATION FOR HOMOGENEOUS METRICS ON SPHERES AND PROJECTIVE SPACES
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BUTTSWORTH, T., PULEMOTOV, A., RUBINSTEIN, Y. A., and ZILLER, W.
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- 2021
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3. Anterior-Segment Optical Coherence Tomography–Guided Measurement Of A Melting Ulcer For Follow-Up Of Corneoscleral Thinning Progression
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Cohen S, Tucker Y, Guttman S, Bubis E, Rubinstein Y, Skaat A, Sher I, and Rotenstreich Y
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anterior segment optical coherence tomography ,corneoscleral melt ,pterygium ,corneoscleral thinning ,ulcer follow up ,Medicine (General) ,R5-920 - Abstract
Shai Cohen,1,2 Yisroel Tucker,3 Sharon Guttman,2,4 Ettel Bubis,2,3 Yair Rubinstein,3 Alon Skaat,2,5 Ifat Sher,2,3 Ygal Rotenstreich2,3 1Department of Ophthalmology, Assaf Harofeh Medical Center, Zerifin, Israel; 2Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel; 3Goldschleger Eye Institute, Sheba Medical Center, Tel Hashomer, Israel; 4Department of Ophthalmology, Assaf Harofeh Medical Center, Zerifin, Israel; 5Sam Rothberg Glaucoma Center, Goldschleger Eye Institute, Sheba Medical Center, Tel Hashomer, IsraelCorrespondence: Ygal RotenstreichGoldschleger Eye Institute, Sheba Medical Center, Derech Sheba 2, Tel-Hashomer, Ramat Gan, IsraelTel +972-3-5308132Email Ygal.Rotenstreich@sheba.health.gov.ilPurpose: To evaluate the feasibility of using anterior-segment optical coherence tomography (AS-OCT) for three-dimensional assessment of corneoscleral thinning progression in ulcers after pterygium removal.Methods: A patient with corneoscleral melting after pterygium removal surgery and mitomycin C treatment was evaluated using AS-OCT imaging of the corneoscleral ulcer at five consecutive time points, up to 2 years. AS-OCT scans of 8.3×5.6 mm (15°×10°) containing 41 B-scans spaced 139 μm apart were performed monthly for 4 months and then at 2 years following pterygium removal. A single B-scan was comprised of 768 A-scans. Ten B-scans of the same position were averaged in a single AS-OCT image. The area of ulcer’s section (AUS) was measured in seven fixed landmarks through a horizontally aligned plane in order to provide an estimation of the three-dimensional size of the lesion.Results: The AUS in the two superior locations increased during the follow-up period to an average of 114% at 2 years compared to the initial visit. In the other five locations (three midline and two inferior), the AUS decreased and was on average 64% in the midline and 29% in the inferior locations at 24 months.Conclusion: AS-OCT provided a readily available assessment of the lesion’s three-dimensional size during repeated follow-ups and identification of localized areas at higher risk for perforation. This method may potentially be useful for corneal surface pathologies requiring repeated follow-ups and may aid in decision-making regarding corneal thickness based on an accurate measurement.Keywords: anterior segment optical coherence tomography, corneoscleral melt, pterygium, corneoscleral thinning, ulcer follow up
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- 2019
4. IMPROVEMENT OF THE EFFICIENCY OF FINE COAL SLIMES FLOTATION
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Rubinstein, Y. B., Linev, B. I., Samoylova, E. K., and Litvinenko, Vladimir, editor
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- 2016
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5. Using a Monte Carlo Method for Optimizing Smoothed Functionals
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Rubinstein, Y.
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- 1977
6. An IFN regulatory factor-2 DNA-binding domain dominant negative mutant exhibits altered cell growth and gene expression
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Rubinstein, Y R, Driggers, P H, Ogryzko, V V, Thornton, A M, Ozato, K, and Pontzer, C H
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- 2000
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7. ON THE RICCI ITERATION FOR HOMOGENEOUS METRICS ON SPHERES AND PROJECTIVE SPACES
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BUTTSWORTH, T., primary, PULEMOTOV, A., additional, RUBINSTEIN, Y. A., additional, and ZILLER, W., additional
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- 2020
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8. Structural Orientation and Antigenic Analysis of the Class 2 and Class 3 Outer Membrane Proteins of Neisseria meningitidis
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Frasch, C.E., primary, Rubinstein, Y., additional, Nguyen, N., additional, and Ewell, J., additional
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- 1991
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9. Effect of various natural medicinals on salivary protein putrefaction and malodor production.
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Sterer N and Rubinstein Y
- Abstract
OBJECTIVE: Salivary incubation assays are commonly used in oral malodor studies. Using an in vitro model system, the effect of various natural medicinals (i.e., echinacea, propolis, elder, mastic gum, marigold, sage, lavender, thyme, and chamomile) on salivary protein putrefaction and malodor production was examined. METHOD AND MATERIALS: Malodor production levels were scored by an experienced odor judge. Volatile sulfide levels were measured using a sulfide monitor (Halimeter), and salivary protein degradation was determined densitometrically following electrophoresis on polyacrylamide gel (SDS-PAGE). Microbial population was evaluated by viable counts and microscopy. RESULTS: Whereas all of the various medicinals caused some reduction in malodor production from the incubated whole saliva, echinacea and lavender were the most effective. CONCLUSION: The bioassay utilized in the present study suggests that these herbs may inhibit oral malodor production. [ABSTRACT FROM AUTHOR]
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- 2006
10. The risk of re-identification versus the need to identify individuals in rare disease research
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Hansson, M.G., Lochmüller, H., Riess, O., Schaefer, F., Orth, M., Rubinstein, Y., Molster, C., Dawkins, H., Taruscio, D., Posada, M., Woods, S., Hansson, M.G., Lochmüller, H., Riess, O., Schaefer, F., Orth, M., Rubinstein, Y., Molster, C., Dawkins, H., Taruscio, D., Posada, M., and Woods, S.
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There is a growing concern in the ethics literature and among policy makers that de-identification or coding of personal data and biospecimens is not sufficient for protecting research subjects from privacy invasions and possible breaches of confidentiality due to the possibility of unauthorized re-identification. At the same time, there is a need in medical science to be able to identify individual patients. In particular for rare disease research there is a special and well-documented need for research collaboration so that data and biosamples from multiple independent studies can be shared across borders. In this article, we identify the needs and arguments related to de-identification and re-identification of patients and research subjects and suggest how the different needs may be balanced within a framework of using unique encrypted identifiers.
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- 2016
11. The risk of re-identification versus the need to identify individuals in rare disease research.
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Hansson, M., Lochmuller, H., Riess, O., Schaefer, F., Orth, M., Rubinstein, Y., Molster, C., Dawkins, Hugh, Taruscio, D., Posada, M., Woods, S., Hansson, M., Lochmuller, H., Riess, O., Schaefer, F., Orth, M., Rubinstein, Y., Molster, C., Dawkins, Hugh, Taruscio, D., Posada, M., and Woods, S.
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- 2016
12. Mitochondrial Disease Sequence Data Resource (MSeqDR): A global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for the mitochondrial disease clinical and research communities
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Falk, M.J. (Marni J.), Shen, L. (Lishuang), Gonzalez, M. (Michael), Leipzig, J. (Jeremy), Lott, M.T. (Marie T.), Stassen, A.P.M. (Alphons P.M.), Diroma, M.A. (Maria Angela), Navarro-Gomez, D. (Daniel), Yeske, P. (Philip), Bai, R. (Renkui), Boles, R.G. (Richard G.), Brilhante, V. (Virginia), Ralph, D. (David), DaRe, J.T. (Jeana T.), Shelton, R. (Robert), Terry, S.F. (Sharon), Zhang, Z. (Zhe), Copeland, W.C. (William C.), Oven, M. (Mannis) van, Prokisch, H. (Holger), Wallace, D.C., Attimonelli, M. (Marcella), Krotoski, D. (Danuta), Zuchner, S. (Stephan), Gai, X. (Xiaowu), Bale, S. (Sherri), Bedoyan, J. (Jirair), Behar, D.M. (Doron), Bonnen, P. (Penelope), Brooks, L. (Lisa), Calabrese, C. (Claudia), Calvo, S. (Sarah), Chinnery, P.F. (Patrick), Christodoulou, J. (John), Church, D. (Deanna), Clima, R. (Rosanna), Cohen, B.H. (Bruce H.), Cotton, R.G.H. (Richard), Coo, I.F.M. (René) de, Derbenevoa, O. (Olga), Dunnen, J.T. (Johan) den, Dimmock, D. (David), Enns, G. (Gregory), Gasparre, G. (Giuseppe), Goldstein, A. (Amy), Gonzalez, I. (Iris), Gwinn, K. (Katrina), Hahn, S. (Sihoun), Haas, R.H. (Richard H.), Hakonarson, H. (Hakon), Hirano, M. (Michio), Kerr, D. (Douglas), Li, D. (Dong), Lvova, M. (Maria), Macrae, F. (Finley), Maglott, D. (Donna), McCormick, E. (Elizabeth), Mitchell, G. (Grant), Mootha, V.K. (Vamsi K.), Okazaki, Y. (Yasushi), Pujol, A. (Aurora), Parisi, M. (Melissa), Perin, J.C. (Juan Carlos), Pierce, E.A. (Eric A.), Procaccio, V. (Vincent), Rahman, S. (Shamima), Reddi, H. (Honey), Rehm, H. (Heidi), Riggs, E. (Erin), Rodenburg, R.J.T. (Richard), Rubinstein, Y. (Yaffa), Saneto, R. (Russell), Santorsola, M. (Mariangela), Scharfe, C. (Curt), Sheldon, C. (Claire), Shoubridge, E.A. (Eric), Simone, D. (Domenico), Smeets, B. (Bert), Smeitink, J.A.M. (Jan), Stanley, C. (Christine), Suomalainen, A. (Anu), Tarnopolsky, M.A. (Mark), Thiffault, I. (Isabelle), Thorburn, D.R. (David R.), Hove, J.V. (Johan Van), Wolfe, L. (Lynne), Wong, L.-J. (Lee-Jun), Falk, M.J. (Marni J.), Shen, L. (Lishuang), Gonzalez, M. (Michael), Leipzig, J. (Jeremy), Lott, M.T. (Marie T.), Stassen, A.P.M. (Alphons P.M.), Diroma, M.A. (Maria Angela), Navarro-Gomez, D. (Daniel), Yeske, P. (Philip), Bai, R. (Renkui), Boles, R.G. (Richard G.), Brilhante, V. (Virginia), Ralph, D. (David), DaRe, J.T. (Jeana T.), Shelton, R. (Robert), Terry, S.F. (Sharon), Zhang, Z. (Zhe), Copeland, W.C. (William C.), Oven, M. (Mannis) van, Prokisch, H. (Holger), Wallace, D.C., Attimonelli, M. (Marcella), Krotoski, D. (Danuta), Zuchner, S. (Stephan), Gai, X. (Xiaowu), Bale, S. (Sherri), Bedoyan, J. (Jirair), Behar, D.M. (Doron), Bonnen, P. (Penelope), Brooks, L. (Lisa), Calabrese, C. (Claudia), Calvo, S. (Sarah), Chinnery, P.F. (Patrick), Christodoulou, J. (John), Church, D. (Deanna), Clima, R. (Rosanna), Cohen, B.H. (Bruce H.), Cotton, R.G.H. (Richard), Coo, I.F.M. (René) de, Derbenevoa, O. (Olga), Dunnen, J.T. (Johan) den, Dimmock, D. (David), Enns, G. (Gregory), Gasparre, G. (Giuseppe), Goldstein, A. (Amy), Gonzalez, I. (Iris), Gwinn, K. (Katrina), Hahn, S. (Sihoun), Haas, R.H. (Richard H.), Hakonarson, H. (Hakon), Hirano, M. (Michio), Kerr, D. (Douglas), Li, D. (Dong), Lvova, M. (Maria), Macrae, F. (Finley), Maglott, D. (Donna), McCormick, E. (Elizabeth), Mitchell, G. (Grant), Mootha, V.K. (Vamsi K.), Okazaki, Y. (Yasushi), Pujol, A. (Aurora), Parisi, M. (Melissa), Perin, J.C. (Juan Carlos), Pierce, E.A. (Eric A.), Procaccio, V. (Vincent), Rahman, S. (Shamima), Reddi, H. (Honey), Rehm, H. (Heidi), Riggs, E. (Erin), Rodenburg, R.J.T. (Richard), Rubinstein, Y. (Yaffa), Saneto, R. (Russell), Santorsola, M. (Mariangela), Scharfe, C. (Curt), Sheldon, C. (Claire), Shoubridge, E.A. (Eric), Simone, D. (Domenico), Smeets, B. (Bert), Smeitink, J.A.M. (Jan), Stanley, C. (Christine), Suomalainen, A. (Anu), Tarnopolsky, M.A. (Mark), Thiffault, I. (Isabelle), Thorburn, D.R. (David R.), Hove, J.V. (Johan Van), Wolfe, L. (Lynne), and Wong, L.-J. (Lee-Jun)
- Abstract
Success rates for genomic analyses of highly heterogeneous disorders can be greatly improved if a large cohort of patient data is assembled to enhance collective capabilities for accurate sequence variant annotation, analysis, and interpretation. Indeed, molecular diagnostics requires the establishment of robust data resources to enable data sharing that informs accurate understanding of genes, variants, and phenotypes. The "Mitochondrial Disease Sequence Data Resource (MSeqDR) Consortium" is a grass-roots effort facilitated by the United Mitochondrial Disease Foundation to identify and prioritize specific genomic data analysis needs of the global mitochondrial disease clinical and research community. A central Web portal (. https://mseqdr.org) facilitates the coherent compilation, organization, annotation, and analysis of sequence data from both nuclear and mitochondrial genomes of individuals and families with suspected mitochondrial disease. This Web portal provides users with a flexible and expandable suite of resources to enable variant-, gene-, and exome-level sequence analysis in a secure, Web-based, and user-friendly fashion. Users can also elect to share data with other MSeqDR Consortium members, or even the general public, either by custom annotation tracks or through the use of a convenient distributed annotation system (DAS) mechanism. A range of data visualization and analysis tools are provided to facilitate user interrogation and understanding of genomic, and ultimately phenotypic, data of relevance to mitochondrial biology and disease. Currently available tools for nuclear and mitochondrial gene analyses include an MSeqDR GBrowse instance that hosts optimized mitochondrial disease and mitochondrial DNA (mtDNA) specific annotation tracks, as well as an MSeqDR locus-specific database (LSDB) that curates variant data on more than 1300 genes that have been implicated in mitochondrial disease and/or encode mitochondria-localized proteins. MSeqDR is integr
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- 2015
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13. International charter of principles for sharing bio-specimens and data
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Mascalzoni, D., Dove, E.S., Rubinstein, Y., Dawkins, H.J.S., Kole, A., McCormack, P., Woods, S., Riess, O., Schaefer, F., Lochmüller, H., Knoppers, B.M., Hansson, M., Mascalzoni, D., Dove, E.S., Rubinstein, Y., Dawkins, H.J.S., Kole, A., McCormack, P., Woods, S., Riess, O., Schaefer, F., Lochmüller, H., Knoppers, B.M., and Hansson, M.
- Abstract
There is a growing international agreement on the need to provide greater access to research data and bio-specimen collections to optimize their long-term value and exploit their potential for health discovery and validation. This is especially evident for rare disease research. Currently, the rising value of data and bio-specimen collections does not correspond with an equal increase in data/sample-sharing and data/sample access. Contradictory legal and ethical frameworks across national borders are obstacles to effective sharing: more specifically, the absence of an integrated model proves to be a major logistical obstruction. The Charter intends to amend the obstacle by providing both the ethical foundations on which data sharing should be based, as well as a general Material and Data Transfer Agreement (MTA/DTA). This Charter is the result of a careful negotiation of different stakeholders' interest and is built on earlier consensus documents and position statements, which provided the general international legal framework. Further to this, the Charter provides tools that may help accelerate sharing. The Charter has been formulated to serve as an enabling tool for effective and transparent data and bio-specimen sharing and the general MTA/DTA constitutes a mechanism to ensure uniformity of access across projects and countries, and may be regarded as a consistent basic agreement for addressing data and material sharing globally. The Charter is forward looking in terms of emerging issues from the perspective of a multi-stakeholder group, and where possible, provides strategies that may address these issues.
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- 2015
14. Choice of optimal search strategy
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Rubinstein, Y.
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- 1976
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15. Choice of optimal subset of numbers using a learning automaton
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Har-El, J. and Rubinstein, Y.
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- 1977
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16. Rare disease research roadmap: Navigating the bioinformatics and translational challenges for improved patient health outcomes
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Bellgard, M.I., Sleeman, M.W., Guerrero, F.D., Fletcher, S., Baynam, G., Goldblatt, J., Rubinstein, Y., Bell, C., Groft, S., Barrero, R., Bittles, A.H., Wilton, S.D., Mason, C.E., Weeramanthri, T., Bellgard, M.I., Sleeman, M.W., Guerrero, F.D., Fletcher, S., Baynam, G., Goldblatt, J., Rubinstein, Y., Bell, C., Groft, S., Barrero, R., Bittles, A.H., Wilton, S.D., Mason, C.E., and Weeramanthri, T.
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Rare disease registries have now been recognized as a global priority for progress both in monitoring and documenting the natural course, and preventing and treating rare diseases. However, a disease registry is only one element of rare disease translational research. Here, we outline what we believe are ten key components in comprehensive rare disease translational research and describe critical relationships between them. These components are: (i) client–practitioner partnerships; (ii) disease registries; (iii) biobanks; (iv) genomics and other -omics platforms; (v) community-based and population-wide studies; (vi) bioinformatics and high performance computing; (vii) interactions with pharma to facilitate drug discovery; (viii) personalized treatments based on genotype-phenotype correlations; (ix) eHealth and a whole of life record; and (x) regulatory frameworks, particularly with regard to specimen and data sharing, and the return of results. Each component has its own inherent complexity, but if effectively integrated they will provide a comprehensive approach to the future management of rare diseases, and aid health care providers in delivering services to individuals affected with rare diseases. We demonstrate that navigation through the roadmap can provide relevant health stakeholders with a blueprint to understand the challenges and barriers which need to be overcome within and across the constituent components. The rare disease roadmap will assist decision-making at all health stakeholder levels and enable the seamless integration of new knowledge, standard operating procedures and the implementation of best practice.
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- 2014
17. Role of international registries in enhancing the care of familial hypercholesterolaemia
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Hammond, E., Watts, G.F., Rubinstein, Y., Farid, W., Livingston, M., Knowles, J.W., Lochmüller, H., Bellgard, M., Dawkins, H.J.S., Hammond, E., Watts, G.F., Rubinstein, Y., Farid, W., Livingston, M., Knowles, J.W., Lochmüller, H., Bellgard, M., and Dawkins, H.J.S.
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Familial hypercholesterolaemia (FH) is a relatively common genetic disorder associated with high risk of coronary heart disease that is preventable by early diagnosis and treatment. In a previous article, we reviewed the evidence for clinical management, models of care and health economic evaluations. The present commentary emphasises that collective action is needed to strengthen our approaches to evidence-based care, including better diagnosis and access to effective therapies. We detail how contemporary innovations in inter-operable, web-based, open-source and secure registries can provide the supporting infrastructure to: (i) address a current gap in the flow of data for measuring the quality of healthcare; (ii) support basic research through provision of high-quality, de-identified aggregate data; (iii) enable equitable access to clinical trials; and (iv) support efforts to disseminate evidence for best practice and information for care services. We describe how these aspects of enabling infrastructure will be incorporated into the development of a National FH Registry for Australasia, and proffer that a coordinated response to FH would be enhanced through a global network of inter-operable registries.
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- 2013
18. Turbulence on a desktop
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Peterson, M. A. and Rubinstein, Y.
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n/a
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- 2001
19. Pride and Prejudice: Using Ethnic-Sounding Names and Inter-Ethnic Marriages to Identify Labour Market Discrimination
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Rubinstein, Y., primary and Brenner, D., additional
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- 2013
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20. Evaluation of currency regimes: the unique role of sudden stops
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Razin, A., primary and Rubinstein, Y., additional
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- 2006
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21. 902 Bileaflet mitral valve orientation — is it associated with obstructive valve thrombosis? A transesophageal echocardiographic study
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SHAPIRA, Y, primary, VATURI, M, additional, RUBINSTEIN, Y, additional, WEISENBERG, D, additional, and SAGIE, A, additional
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- 2003
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22. Simple air-tight powder x-ray diffraction cell
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Palchik, O., primary, Gedanken, A., additional, and Rubinstein, Y., additional
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- 2003
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23. Turbulence on a desktop
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Peterson, M.A., primary and Rubinstein, Y., additional
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- 2001
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24. Loss of interferon alpha and interferon tau-induced antiviral protection in interferon regulatory factor-2 DNA-binding domain dominant negative mutants
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Rubinstein, Y. R. and Pontzer, C. H.
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- 2000
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25. Pseudo meigs' syndrome secondary to colorectal adenocarcinoma metastasis to the ovaries.
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Rubinstein Y, Dashkovsky I, Cozacov C, Hadary A, and Zidan J
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- 2009
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26. Interferon regulatory factor-1 is a major regulator of epidermal growth factor receptor gene expression
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Rubinstein, Y. R., Proctor, K. N., Bergel, M., Murphy, B., and Johnson, A. C.
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- 1998
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27. Molecular cloning and characterization of a transcription regulator with homology to GC-binding factor.
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Reed, A L, Yamazaki, H, Kaufman, J D, Rubinstein, Y, Murphy, B, and Johnson, A C
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GC-binding factor (GCF) represses transcription of certain genes and is encoded by a 3.0-kilobase mRNA (Kageyama, R., and Pastan, I. (1989) Cell 59, 815-825). The GCF cDNA hybridizes to two additional mRNA species, 4.2 and 1.2 kilobases. We have used differential hybridization to identify a cDNA clone (termed GCF2) for the 4. 2-kilobase mRNA and find that it is highly expressed in HUT-102 cells. The open reading frame consists of 2256 nucleotides and encodes a protein of 752 amino acids with a calculated molecular mass of 83 kilodaltons. GCF2 expressed in vitro using reticulocyte lysates and Escherichia coli migrates as a 160-kilodalton protein in SDS-polyacrylamide gel electrophoresis but has a molecular mass of 83 kilodaltons as determined by mass spectrum analysis. GCF2 binds to epidermal growth factor receptor promoter fragments, and the major binding site is located between nucleotides -249 and -233. Cotransfection assays show that GCF2 acts to repress transcription from the epidermal growth factor receptor promoter in constructs containing the major GCF2 binding site and not when the site had been mutated. Thus, GCF2 is a newly identified transcriptional repressor with aberrant electrophoretic mobility.
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- 1998
28. International Charter of principles for sharing bio-specimens and data
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Deborah Mascalzoni, Es, Dove, Rubinstein Y, Hj, Dawkins, Kole A, McCormack P, Woods S, Riess O, Schaefer F, Lochmüller H, Bm, Knoppers, and Hansson M
29. Selecting the best stable stochastic system
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Rubinstein, Y., primary
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- 1980
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30. About one of Tsetlin's problems of the collective behavior of stochastic automata
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Rubinstein, Y., primary and Har-El, J., additional
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- 1976
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31. Technical Note—Using a Monte Carlo Method for Optimizing Smoothed Functional
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Rubinstein, Y., primary
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- 1977
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32. A Modified Version of Handscomb’s Antithetic Variates Theorem
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Rubinstein, Y. R., primary and Samorodnitsky, G., additional
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- 1987
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33. Local and integral properties of a search algorithm of the stochastic approximation type
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Rubinstein, Y., primary and Karnovsky, A., additional
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- 1978
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34. Mitochondrial Disease Sequence Data Resource (MSeqDR): a global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for the mitochondrial disease clinical and research communities
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Xiaowu Gai, Jeremy Leipzig, Aurora Pujol, Richard G. Boles, Deanna M. Church, Finley Macrae, Erin Rooney Riggs, Michio Hirano, Mariangela Santorsola, Yaffa R. Rubinstein, Rosanna Clima, Marie T. Lott, Penelope E. Bonnen, Christine M. Stanley, David Dimmock, Heidi L. Rehm, Marni J. Falk, Giuseppe Gasparre, Holger Prokisch, Shamima Rahman, Claire A. Sheldon, Anu Suomalainen, Hakon Hakonarson, Sarah E. Calvo, Melissa A. Parisi, Alphons P. M. Stassen, Zhe Zhang, Katrina Gwinn, Johan L.K. Van Hove, Lee-Jun C. Wong, Lisa D. Brooks, Virginia Brilhante, William C. Copeland, Jeana T. DaRe, Curt Scharfe, Michael A. Gonzalez, Johan T. den Dunnen, I.F.M. de Coo, Iris L. Gonzalez, Claudia Calabrese, Yasushi Okazaki, Vamsi K. Mootha, Lynne A. Wolfe, Douglas S. Kerr, Doron M. Behar, Bert Smeets, John Christodoulou, Juan C. Perin, Stephan Züchner, Lishuang Shen, Eric A. Shoubridge, Sihoun Hahn, Danuta Krotoski, Sharon F. Terry, Domenico Simone, David Ralph, Renkui Bai, Olga Derbenevoa, Honey V. Reddi, Eric A. Pierce, Daniel Navarro-Gomez, Gregory M. Enns, Vincent Procaccio, Russell P. Saneto, Mannis van Oven, Philip E. Yeske, David R. Thorburn, Bruce H. Cohen, Maria Lvova, Robert Shelton, Douglas C. Wallace, Maria Angela Diroma, Marcella Attimonelli, Dong Li, Elizabeth M. McCormick, Amy Goldstein, Mark A. Tarnopolsky, Patrick F. Chinnery, Donna Maglott, Richard J. Rodenburg, Jirair K. Bedoyan, Richard G.H. Cotton, Richard H. Haas, Jan A.M. Smeitink, Grant A. Mitchell, Isabelle Thiffault, Sherri J. Bale, RS: CARIM - R2 - Cardiac function and failure, RS: GROW - Developmental Biology, Genetica & Celbiologie, Klinische Genetica, RS: GROW - R4 - Reproductive and Perinatal Medicine, Falk M.J., Shen L., Gonzalez M., Leipzig J., Lott M.T., Stassen A.P.M., Diroma M.A., Navarro-Gomez D., Yeske P., Bai R., Boles R.G., Brilhante V., Ralph D., DaRe J.T., Shelton R., Terry S.F., Zhang Z., Copeland W.C., van Oven M., Prokisch H., Wallace D.C., Attimonelli M., Krotoski D., Zuchner S., Gai X., Bale S., Bedoyan J., Behar D., Bonnen P., Brooks L., Calabrese C., Calvo S., Chinnery P., Christodoulou J., Church D.t, Clima R., Cohen B.H., Cotton R.G., de Coo I.F.M., Derbenevoa O., den Dunnen J.T., Dimmock D., Enns G., Gasparre G., Goldstein A., Gonzalez I., Gwinn K., Hahn S., Haas R.H., Hakonarson H., Hirano M., Kerr D., Li D., Lvova M., Macrae F., Maglott D., McCormick E., Mitchell G., Mootha V.K., Okazaki Y., Pujol A., Parisi M., Perin J.C., Pierce E.A., Procaccio V., Rahman S., Reddi H., Rehm H., Riggs E., Rodenburg R., Rubinstein Y., Saneto R., Santorsola M., Scharfe C., Sheldon C., Shoubridge E.A., Simone D., Smeets B., Smeitink J.A., Stanley C., Suomalainen A., Tarnopolsky M., Thiffault I., Thorburn D.R., Hove J.V., Wolfe L., Wong L.J., and Genetic Identification
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Male ,Mitochondrial DNA ,Mitochondrial Diseases ,DATABASE ,Endocrinology, Diabetes and Metabolism ,Mitochondrial disease ,Genomics ,mitochondrial DNA ,Computational biology ,Biology ,Biochemistry ,Genome ,Article ,03 medical and health sciences ,Annotation ,User-Computer Interface ,0302 clinical medicine ,Endocrinology ,Data visualization ,Human Phenotype Ontology ,Databases, Genetic ,Genetics ,medicine ,Humans ,Exome ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,Internet ,business.industry ,Information Dissemination ,Computational Biology ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,medicine.disease ,3. Good health ,Data sharing ,Phenotype ,Genome, Mitochondrial ,Female ,business ,030217 neurology & neurosurgery ,Software - Abstract
Success rates for genomic analyses of highly heterogeneous disorders can be greatly improved if a large cohort of patient data is assembled to enhance collective capabilities for accurate sequence variant annotation, analysis, and interpretation. Indeed, molecular diagnostics requires the establishment of robust data resources to enable data sharing that informs accurate understanding of genes, variants, and phenotypes. The "Mitochondrial Disease Sequence Data Resource (MSeqDR) Consortium" is a grass-roots effort facilitated by the United Mitochondria] Disease Foundation to identify and prioritize specific genomic data analysis needs of the global mitochondrial disease clinical and research community. A central Web portal (https://mseqdr.org) facilitates the coherent compilation, organization, annotation, and analysis of sequence data from both nuclear and mitochondrial genomes of individuals and families with suspected mitochondria! disease. This Web portal provides users with a flexible and expandable suite of resources to enable variant-, gene-, and exome-level sequence analysis in a secure, Web-based, and user-friendly fashion. Users can also elect to share data with other MSeqDR Consortium members, or even the general public, either by custom annotation tracks or through the use of a convenient distributed annotation system (DAS) mechanism. A range of data visualization and analysis tools are provided to facilitate user interrogation and understanding of genomic, and ultimately phenotypic, data of relevance to mitochondrial biology and disease. Currently available tools for nuclear and mitochondrial gene analyses include an MSeqDR GBrowse instance that hosts optimized mitochondrial disease and mitochondrial DNA (mtDNA) specific annotation tracks, as well as an MSeqDR locus-specific database (LSDB) that curates variant data on more than 1300 genes that have been implicated in mitochondrial disease and/or encode mitochondria-localized proteins. MSeqDR is integrated with a diverse array of mtDNA data analysis tools that are both freestanding and incorporated into an online exome-level dataset curation and analysis resource (GEM.app) that is being optimized to support needs of the MSeqDR community. In addition, MSeqDR supports mitochondrial disease phenotyping and ontology tools, and provides variant pathogenicity assessment features that enable community review, feedback, and integration with the public ClinVar variant annotation resource. A centralized Web-based informed consent process is being developed, with implementation of a Global Unique Identifier (GUID) system to integrate data deposited on a given individual from different sources. Community-based data deposition into MSeqDR has already begun. Future efforts will enhance capabilities to incorporate phenotypic data that enhance genomic data analyses. MSeqDR will fill the existing void in bioinformatics tools and centralized knowledge that are necessary to enable efficient nuclear and mtDNA genomic data interpretation by a range of shareholders across both clinical diagnostic and research settings. Ultimately, MSeqDR is focused on empowering the global mitochondrial disease community to better define and explore mitochondrial diseases. (C) 2014 Elsevier Inc. All rights reserved.
- Published
- 2015
35. Explore Biobanking Issues: Get to Know ISBER's Working Groups and Special Interest Groups.
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Allocca CM, Wadhwa L, Mullins P, Michels C, Rubinstein Y, Orth S, Zaayenga A, and Vercauteren S
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- Biological Specimen Banks, Public Opinion
- Published
- 2022
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36. High-intensity Focused Ultrasound Treatment in Moderate Glaucoma Patients: Results of a 2-Year Prospective Clinical Trial.
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Leshno A, Rubinstein Y, Singer R, Sher I, Rotenstreich Y, Melamed S, and Skaat A
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- Aged, Aged, 80 and over, Female, Follow-Up Studies, Glaucoma, Open-Angle physiopathology, Humans, Intraocular Pressure physiology, Male, Middle Aged, Postoperative Complications surgery, Prospective Studies, Slit Lamp Microscopy, Tonometry, Ocular, Treatment Outcome, Ciliary Body surgery, Glaucoma, Open-Angle surgery, High-Intensity Focused Ultrasound Ablation methods
- Abstract
Precis: Ultrasound Cyclo Plasty (UCP) treatment using high-intensity focused ultrasound (HIFU) is an effective and safe therapy to reduce intraocular pressure (IOP) in moderate glaucoma patients as was measured during a 2-year follow-up period., Purpose: The purpose of this study was to evaluate the long-term safety and efficacy of the UCP procedure using HIFU in moderate glaucoma patients., Patients and Methods: A prospective interventional noncomparative study was carried out. Fifteen patients (15 eyes) with moderate open-angle glaucoma were enrolled. All eyes were treated with UCP-HIFU. A thorough ophthalmic examination and IOP measurements were performed before the UCP-HIFU procedure and at 1 day, 1 week, 4 weeks, 3 months, 6 months, 1 year, and 2 years after the procedure. The primary outcome was defined as a surgical success (IOP reduction of 20% or ≥5 mm Hg) at the last follow-up visit. The secondary outcomes were the mean IOP at each follow-up visit, number of medications used, complications profile, and reinterventions., Results: The mean preoperative IOP at baseline was 26.8±5.0 mm Hg. All patients had a positive response and a lower IOP after treatment, with a relatively stable 31% reduction in IOP during the follow-up period. A significant reduction in IOP was observed at all postprocedure examination points (P<0.01), with a mean 17.6±4.4 mm Hg at 2 years after the procedure (P=0.005). Surgical success was achieved in 87% of the patients at their last follow-up visit. There was a nonsignificant decrease in the mean number of glaucoma medications from 2.5±0.8 to 2.0±1.0 at 2 years (P=0.48). No major intraoperative or postoperative complications were noted., Conclusion: UCP-HIFU treatment is an effective, safe, and well-tolerated method to reduce IOP in patients with moderate glaucoma.
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- 2020
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37. Effect of light and diurnal variation on macular thickness in X-linked retinoschisis: a case series.
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Rubinstein Y, Weiner C, Chetrit N, Newman H, Hecht I, Shoshany N, and Pras E
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- Adult, DNA genetics, DNA Mutational Analysis, Female, Humans, Male, Middle Aged, Mutation, Retinoschisis genetics, Retinoschisis metabolism, Young Adult, Circadian Rhythm physiology, Electroretinography methods, Eye Proteins genetics, Macula Lutea pathology, Retinoschisis diagnosis, Tomography, Optical Coherence methods, Visual Acuity
- Abstract
Background: Diurnal variations in foveal thickness have been reported in several ocular pathologies including X-linked retinoschisis (XLRS), but its underlying mechanism is poorly understood. Rods are active under scotopic conditions with high metabolic demand, and its decrease may have positive effect on metabolic activity and macular thickness. The purpose of this study is to evaluate whether exposure to light and diurnal variation influence macular thickness in XLRS patients., Methods: Five patients with clinical suspicion of XLRS underwent RS1 gene sequencing and optical coherence tomography measurements at three consecutive times: morning following sleep in a dark room, morning following sleep in an illuminated room, and late afternoon following sleep in an illuminated room. Central macular thickness (CMT) was compared between measurements, and molecular analysis was performed., Results: Five RS1 mutations were identified: p.Gly140Arg, p.Arg141Cys, p.Gly109Glu, p.Pro193Leu, and p.Arg200His in patients 1-5, respectively. Two patients (4-5) had atrophied macula and were excluded from macular thickness variation analysis. A significant decrease in CMT between morning and afternoon measurements was observed in all patients (1-3: mean: 455.0 ± 32 μm to 342.17 ± 39 μm, 25%). Morning measurements following sleep in an illuminated room show a CMT reduction in all eyes of all patients with a mean reduction of 113 μm (mean: 547.17 ± 105 μm to 455.0 ± 32 μm, 17%)., Conclusions: Among XLRS patients, CMT decreased at the afternoon compared to the morning of the same day and may be reduced following sleep in an illuminated room. These results help shed light on the pathophysiologic process underlying intraretinal fluid accumulation involved with the disease.
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- 2020
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38. Microarchitecture of Schlemm Canal Before and After Cataract Extraction Surgery.
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Rubinstein Y, Fogel-Levin M, Singer R, Levkovitch-Verbin H, Moros I, Sher I, Rotenstreich Y, and Skaat A
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- Adult, Aged, Aged, 80 and over, Cataract diagnosis, Cross-Sectional Studies, Female, Humans, Iris diagnostic imaging, Iris pathology, Iris surgery, Iris ultrastructure, Limbus Corneae diagnostic imaging, Limbus Corneae pathology, Limbus Corneae surgery, Limbus Corneae ultrastructure, Male, Middle Aged, Postoperative Period, Preoperative Period, Sclera pathology, Sclera surgery, Tomography, Optical Coherence methods, Trabecular Meshwork diagnostic imaging, Trabecular Meshwork pathology, Trabecular Meshwork surgery, Trabecular Meshwork ultrastructure, Cataract pathology, Cataract Extraction adverse effects, Cataract Extraction methods, Sclera diagnostic imaging, Sclera ultrastructure
- Abstract
Precis: Schlemm canal (SC) expands after cataract extraction (CE), both in the area and in volume by 25% as was measured using enhanced-depth imaging optical coherent tomography (EDI-OCT) in patients before and 1 week after CE., Purpose: This study aims to characterize the structural and volume changes on the microstructure of SC in patients before and after uneventful phacoemulsification CE by using EDI-OCT., Materials and Methods: Forty-one serial horizontal EDI-OCT B-scans (interval between B-scans, 69 µm) were obtained in the nasal corneoscleral limbus before and 1 week after CE. The structure of aqueous channels, conjunctival blood vessels and iris anatomy in each scan were used as landmarks to select for overlapping scans taken before and following CE. The SC cross-section area was measured in each of the selected scans and SC volume was determined following a 3-dimensional reconstruction., Results: Eleven eyes (6 females and 5 males) were imaged successfully before and after CE. Mean age was 70.54±11.38 years. The mean axial length was 23.10±0.87 mm. After CE, the mean best-corrected visual acuity in logMAR improved from 0.4±0.13 to 0.2±0.13 (P=0.028). There was no significant change in the mean intraocular pressure before and after CE (15.09±1.33 to 15.0±2.16 mm Hg; P=0.39). The mean SC cross-section area increased by 25%, from 4744±376 to 5941±1048 μm (P<0.001). SC volume in the analyzed region increased by 25% from 6,641,473±585,954 to 8,317,909±1,328,809 μm (P<0.001)., Conclusion: CE expands SC dimensions in healthy eyes. EDI-OCT imaging of SC may prove useful in the evaluation of the SC dimensions in vivo before and after CE.
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- 2019
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39. The RD-Connect Registry & Biobank Finder: a tool for sharing aggregated data and metadata among rare disease researchers.
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Gainotti S, Torreri P, Wang CM, Reihs R, Mueller H, Heslop E, Roos M, Badowska DM, de Paulis F, Kodra Y, Carta C, Martìn EL, Miller VR, Filocamo M, Mora M, Thompson M, Rubinstein Y, Posada de la Paz M, Monaco L, Lochmüller H, and Taruscio D
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- Biological Specimen Banks, Biomedical Research, Databases, Factual, Humans, Information Dissemination, Patients, Rare Diseases blood, Rare Diseases epidemiology, Registries, Computational Biology, Genomics, Metadata, Rare Diseases genetics
- Abstract
In rare disease (RD) research, there is a huge need to systematically collect biomaterials, phenotypic, and genomic data in a standardized way and to make them findable, accessible, interoperable and reusable (FAIR). RD-Connect is a 6 years global infrastructure project initiated in November 2012 that links genomic data with patient registries, biobanks, and clinical bioinformatics tools to create a central research resource for RDs. Here, we present RD-Connect Registry & Biobank Finder, a tool that helps RD researchers to find RD biobanks and registries and provide information on the availability and accessibility of content in each database. The finder concentrates information that is currently sparse on different repositories (inventories, websites, scientific journals, technical reports, etc.), including aggregated data and metadata from participating databases. Aggregated data provided by the finder, if appropriately checked, can be used by researchers who are trying to estimate the prevalence of a RD, to organize a clinical trial on a RD, or to estimate the volume of patients seen by different clinical centers. The finder is also a portal to other RD-Connect tools, providing a link to the RD-Connect Sample Catalogue, a large inventory of RD biological samples available in participating biobanks for RD research. There are several kinds of users and potential uses for the RD-Connect Registry & Biobank Finder, including researchers collaborating with academia and the industry, dealing with the questions of basic, translational, and/or clinical research. As of November 2017, the finder is populated with aggregated data for 222 registries and 21 biobanks.
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- 2018
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40. Macular Corneal Dystrophy and Posterior Corneal Abnormalities.
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Rubinstein Y, Weiner C, Einan-Lifshitz A, Chetrit N, Shoshany N, Zadok D, Avni I, and Pras E
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- Adolescent, Corneal Dystrophies, Hereditary genetics, Corneal Dystrophies, Hereditary surgery, DNA Mutational Analysis, Follow-Up Studies, Humans, Microscopy, Acoustic, Middle Aged, Mutation, Missense, Pedigree, Recurrence, Sulfotransferases genetics, Tomography, Optical Coherence, Visual Acuity physiology, Young Adult, Carbohydrate Sulfotransferases, Corneal Dystrophies, Hereditary diagnosis, Corneal Transplantation, Endothelium, Corneal pathology, Keratoplasty, Penetrating
- Abstract
Purpose: This study reports the presentation of 2 families with macular corneal dystrophy (MCD). The aim of this study was to show whether ultrasound biomicroscopy (UBM) can, based on posterior changes of the cornea in MCD, assist in the choice of surgery, either anterior lamellar keratoplasty (DALK) or penetrating keratoplasty (PK), compared with optical coherence tomography (OCT) and Scheimpflug., Methods: Six patients with MCD were examined for their best-corrected visual acuity, slit-lamp, OCT, UBM, and Scheimpflug findings. Blood samples for DNA and exons of the CHST6 gene were screened for mutations., Results: All 6 patients showed typical MCD signs at the slit lamp. Corneal transplantation was required in 2 patients in both eyes. Recurrence of MCD was observed in 2 eyes after the DALK procedure (patient A5, age 48 years, right eye and B1, 51 years, left eye), whereas the 2 eyes after PK (patient A5, age 48 years, left eye and patient B1, 51 years, right eye) remained clear (for 10 years of follow-up in patient A5 and 4 years in patient B1). In 2 patients (A1 and A3), corneal thinning could be evaluated by OCT. In 3 patients (A2, 3, and 4), UBM disclosed deeper pathologies including opacities, loss of continuity, and focal protrusions of the posterior cornea, which were not evident by other devices. In family A, a novel mutation was identified., Conclusions: Our UBM examination of MCD shows alterations of the cornea's posterior layer and confirms the known clinical and histological findings of MCD that PK represents the therapy of choice, contrary to DALK. The novel CHST6 mutation shows the heterogeneity of MCD.
- Published
- 2016
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41. Improving the value of clinical research through the use of Common Data Elements.
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Sheehan J, Hirschfeld S, Foster E, Ghitza U, Goetz K, Karpinski J, Lang L, Moser RP, Odenkirchen J, Reeves D, Rubinstein Y, Werner E, and Huerta M
- Subjects
- Data Collection, Humans, National Institutes of Health (U.S.), United States, Biomedical Research, Common Data Elements, Information Dissemination
- Abstract
The use of Common Data Elements can facilitate cross-study comparisons, data aggregation, and meta-analyses; simplify training and operations; improve overall efficiency; promote interoperability between different systems; and improve the quality of data collection. A Common Data Element is a combination of a precisely defined question (variable) paired with a specified set of responses to the question that is common to multiple datasets or used across different studies. Common Data Elements, especially when they conform to accepted standards, are identified by research communities from variable sets currently in use or are newly developed to address a designated data need. There are no formal international specifications governing the construction or use of Common Data Elements. Consequently, Common Data Elements tend to be made available by research communities on an empiric basis. Some limitations of Common Data Elements are that there may still be differences across studies in the interpretation and implementation of the Common Data Elements, variable validity in different populations, and inhibition by some existing research practices and the use of legacy data systems. Current National Institutes of Health efforts to support Common Data Element use are linked to the strengthening of National Institutes of Health Data Sharing policies and the investments in data repositories. Initiatives include cross-domain and domain-specific resources, construction of a Common Data Element Portal, and establishment of trans-National Institutes of Health working groups to address technical and implementation topics. The National Institutes of Health is seeking to lower the barriers to Common Data Element use through greater awareness and encourage the culture change necessary for their uptake and use. As National Institutes of Health, other agencies, professional societies, patient registries, and advocacy groups continue efforts to develop and promote the responsible use of Common Data Elements, particularly if linked to accepted data standards and terminologies, continued engagement with and feedback from the research community will remain important., (© The Author(s) 2016.)
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- 2016
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42. The risk of re-identification versus the need to identify individuals in rare disease research.
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Hansson MG, Lochmüller H, Riess O, Schaefer F, Orth M, Rubinstein Y, Molster C, Dawkins H, Taruscio D, Posada M, and Woods S
- Subjects
- Biomedical Research ethics, Biomedical Research legislation & jurisprudence, Biomedical Research methods, Genetic Privacy legislation & jurisprudence, Genetic Testing legislation & jurisprudence, Genetic Testing methods, Humans, Rare Diseases diagnosis, Genetic Privacy ethics, Genetic Testing ethics, International Cooperation, Rare Diseases genetics
- Abstract
There is a growing concern in the ethics literature and among policy makers that de-identification or coding of personal data and biospecimens is not sufficient for protecting research subjects from privacy invasions and possible breaches of confidentiality due to the possibility of unauthorized re-identification. At the same time, there is a need in medical science to be able to identify individual patients. In particular for rare disease research there is a special and well-documented need for research collaboration so that data and biosamples from multiple independent studies can be shared across borders. In this article, we identify the needs and arguments related to de-identification and re-identification of patients and research subjects and suggest how the different needs may be balanced within a framework of using unique encrypted identifiers.
- Published
- 2016
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43. International Charter of principles for sharing bio-specimens and data.
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Mascalzoni D, Dove ES, Rubinstein Y, Dawkins HJ, Kole A, McCormack P, Woods S, Riess O, Schaefer F, Lochmüller H, Knoppers BM, and Hansson M
- Published
- 2016
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44. International Charter of principles for sharing bio-specimens and data.
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Mascalzoni D, Dove ES, Rubinstein Y, Dawkins HJ, Kole A, McCormack P, Woods S, Riess O, Schaefer F, Lochmüller H, Knoppers BM, and Hansson M
- Subjects
- Biological Specimen Banks organization & administration, Europe, Information Dissemination ethics, Biological Specimen Banks legislation & jurisprudence, Contracts, Information Dissemination legislation & jurisprudence, International Cooperation legislation & jurisprudence
- Abstract
There is a growing international agreement on the need to provide greater access to research data and bio-specimen collections to optimize their long-term value and exploit their potential for health discovery and validation. This is especially evident for rare disease research. Currently, the rising value of data and bio-specimen collections does not correspond with an equal increase in data/sample-sharing and data/sample access. Contradictory legal and ethical frameworks across national borders are obstacles to effective sharing: more specifically, the absence of an integrated model proves to be a major logistical obstruction. The Charter intends to amend the obstacle by providing both the ethical foundations on which data sharing should be based, as well as a general Material and Data Transfer Agreement (MTA/DTA). This Charter is the result of a careful negotiation of different stakeholders' interest and is built on earlier consensus documents and position statements, which provided the general international legal framework. Further to this, the Charter provides tools that may help accelerate sharing. The Charter has been formulated to serve as an enabling tool for effective and transparent data and bio-specimen sharing and the general MTA/DTA constitutes a mechanism to ensure uniformity of access across projects and countries, and may be regarded as a consistent basic agreement for addressing data and material sharing globally. The Charter is forward looking in terms of emerging issues from the perspective of a multi-stakeholder group, and where possible, provides strategies that may address these issues.
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- 2015
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45. Role of international registries in enhancing the care of familial hypercholesterolaemia.
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Hammond E, Watts GF, Rubinstein Y, Farid W, Livingston M, Knowles JW, Lochmüller H, Bellgard M, and Dawkins HJ
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- Australia, Coronary Disease etiology, Evidence-Based Practice methods, Humans, Hydroxymethylglutaryl-CoA Reductase Inhibitors administration & dosage, Hyperlipoproteinemia Type II complications, Hyperlipoproteinemia Type II genetics, Information Dissemination methods, Internationality, New Zealand, Quality Assurance, Health Care methods, Registries statistics & numerical data, Secondary Prevention, Coronary Disease prevention & control, Evidence-Based Practice standards, Hydroxymethylglutaryl-CoA Reductase Inhibitors therapeutic use, Hyperlipoproteinemia Type II drug therapy, Quality Assurance, Health Care standards, Quality Indicators, Health Care
- Abstract
Familial hypercholesterolaemia (FH) is a relatively common genetic disorder associated with high risk of coronary heart disease that is preventable by early diagnosis and treatment. In a previous article, we reviewed the evidence for clinical management, models of care and health economic evaluations. The present commentary emphasises that collective action is needed to strengthen our approaches to evidence-based care, including better diagnosis and access to effective therapies. We detail how contemporary innovations in inter-operable, web-based, open-source and secure registries can provide the supporting infrastructure to: (i) address a current gap in the flow of data for measuring the quality of healthcare; (ii) support basic research through provision of high-quality, de-identified aggregate data; (iii) enable equitable access to clinical trials; and (iv) support efforts to disseminate evidence for best practice and information for care services. We describe how these aspects of enabling infrastructure will be incorporated into the development of a National FH Registry for Australasia, and proffer that a coordinated response to FH would be enhanced through a global network of inter-operable registries., (© 2013 The Authors. International Journal of Evidence-Based Healthcare © 2013 The Joanna Briggs Institute.)
- Published
- 2013
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46. New and evolving rare diseases research programs at the National Institutes of Health.
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Groft SC and Rubinstein YR
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- Cooperative Behavior, Databases, Factual, Drug Industry, Humans, National Institutes of Health (U.S.), Public-Private Sector Partnerships, Registries, Translational Research, Biomedical, United States, Biomedical Research trends, Rare Diseases diagnosis, Rare Diseases therapy, Research Support as Topic
- Abstract
Research emphasis on rare diseases and orphan products remains a major focus of the research Institutes and Centers of National Institutes of Health (NIH). NIH provides more than USD 31 billion annually in biomedical research and research support. This research is the basis of many of the health advances in rare and common diseases. Numerous efforts and a major emphasis by the public and private sector initiatives have resulted in an increase of interventions and diagnostics for rare diseases. Newer translational research programs provide a more systematic and coordinated approach to rare diseases research and orphan products development. The approach that is offered requires extensive public-private partnerships with the pharmaceutical industry, contract research organizations, philanthropic foundations, medical and scientific advisory boards, patient advocacy groups, the academic research community, research and regulatory scientists, government funding agencies, and the public. Each program is unique and requires lengthy planning and collaborative efforts to reach programmatic goals., (© 2013 S. Karger AG, Basel.)
- Published
- 2013
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47. Down syndrome: national conference on patient registries, research databases, and biobanks.
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Oster-Granite ML, Parisi MA, Abbeduto L, Berlin DS, Bodine C, Bynum D, Capone G, Collier E, Hall D, Kaeser L, Kaufmann P, Krischer J, Livingston M, McCabe LL, Pace J, Pfenninger K, Rasmussen SA, Reeves RH, Rubinstein Y, Sherman S, Terry SF, Whitten MS, Williams S, McCabe ER, and Maddox YT
- Subjects
- Humans, United States epidemiology, Biological Specimen Banks statistics & numerical data, Biomedical Research statistics & numerical data, Databases as Topic statistics & numerical data, Down Syndrome epidemiology, Registries statistics & numerical data
- Abstract
A December 2010 meeting, "Down Syndrome: National Conference on Patient Registries, Research Databases, and Biobanks," was jointly sponsored by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) at the National Institutes of Health (NIH) in Bethesda, MD, and the Global Down Syndrome Foundation (GDSF)/Linda Crnic Institute for Down Syndrome based in Denver, CO. Approximately 70 attendees and organizers from various advocacy groups, federal agencies (Centers for Disease Control and Prevention, and various NIH Institutes, Centers, and Offices), members of industry, clinicians, and researchers from various academic institutions were greeted by Drs. Yvonne Maddox, Deputy Director of NICHD, and Edward McCabe, Executive Director of the Linda Crnic Institute for Down Syndrome. They charged the participants to focus on the separate issues of contact registries, research databases, and biobanks through both podium presentations and breakout session discussions. Among the breakout groups for each of the major sessions, participants were asked to generate responses to questions posed by the organizers concerning these three research resources as they related to Down syndrome and then to report back to the group at large with a summary of their discussions. This report represents a synthesis of the discussions and suggested approaches formulated by the group as a whole., (Copyright © 2011. Published by Elsevier Inc. All rights reserved.)
- Published
- 2011
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48. Biospecimen reporting for improved study quality (BRISQ).
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Moore HM, Kelly AB, Jewell SD, McShane LM, Clark DP, Greenspan R, Hayes DF, Hainaut P, Kim P, Mansfield E, Potapova O, Riegman P, Rubinstein Y, Seijo E, Somiari S, Watson P, Weier HU, Zhu C, and Vaught J
- Subjects
- Humans, Quality Control, Research standards, Specimen Handling
- Abstract
Human biospecimens are subject to a number of different collection, processing, and storage factors that can significantly alter their molecular composition and consistency. These biospecimen preanalytical factors, in turn, influence experimental outcomes and the ability to reproduce scientific results. Currently, the extent and type of information specific to the biospecimen preanalytical conditions reported in scientific publications and regulatory submissions varies widely. To improve the quality of research utilizing human tissues, it is critical that information regarding the handling of biospecimens be reported in a thorough, accurate, and standardized manner. The Biospecimen Reporting for Improved Study Quality (BRISQ) recommendations outlined herein are intended to apply to any study in which human biospecimens are used. The purpose of reporting these details is to supply others, from researchers to regulators, with more consistent and standardized information to better evaluate, interpret, compare, and reproduce the experimental results. The BRISQ guidelines are proposed as an important and timely resource tool to strengthen communication and publications around biospecimen-related research and help reassure patient contributors and the advocacy community that the contributions are valued and respected.
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- 2011
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49. Biospecimen Reporting for Improved Study Quality.
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Moore HM, Kelly A, Jewell SD, McShane LM, Clark DP, Greenspan R, Hainaut P, Hayes DF, Kim P, Mansfield E, Potapova O, Riegman P, Rubinstein Y, Seijo E, Somiari S, Watson P, Weier HU, Zhu C, and Vaught J
- Abstract
Human biospecimens are subject to a number of different collection, processing, and storage factors that can significantly alter their molecular composition and consistency. These biospecimen preanalytical factors, in turn, influence experimental outcomes and the ability to reproduce scientific results. Currently, the extent and type of information specific to the biospecimen preanalytical conditions reported in scientific publications and regulatory submissions varies widely. To improve the quality of research utilizing human tissues, it is critical that information regarding the handling of biospecimens be reported in a thorough, accurate, and standardized manner. The Biospecimen Reporting for Improved Study Quality recommendations outlined herein are intended to apply to any study in which human biospecimens are used. The purpose of reporting these details is to supply others, from researchers to regulators, with more consistent and standardized information to better evaluate, interpret, compare, and reproduce the experimental results. The Biospecimen Reporting for Improved Study Quality guidelines are proposed as an important and timely resource tool to strengthen communication and publications around biospecimen-related research and help reassure patient contributors and the advocacy community that the contributions are valued and respected.
- Published
- 2011
- Full Text
- View/download PDF
50. The case for a global rare-diseases registry.
- Author
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Forrest CB, Bartek RJ, Rubinstein Y, and Groft SC
- Subjects
- Cooperative Behavior, Humans, International Cooperation, Rare Diseases, Registries
- Published
- 2011
- Full Text
- View/download PDF
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