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3. Phylogenomics and the rise of the angiosperms

Author

Universidad de Sevilla. Departamento de Biología Vegetal y Ecología, Royal Botanic Gardens, Kew. U. K., Villum Fonden. Denmark, Aarhus University. Denmark, James Hutton Institute. U. K., National Institute of Agricultural Botany (NIAB). U. K., Zuntini, Alexandre R., Carruthers, Tom, Maurin, Olivier, Bailey, Paul C., Leempoel, Kevin, Brewer, Grace E., Arista Palmero, Montserrat, Ariza Molina, María Jesús, Arroyo Marín, Juan, De Castro Mateo, Alejandra, Escudero Lirio, Marcial, Valle García, José Carlos del, Baker, William J., Universidad de Sevilla. Departamento de Biología Vegetal y Ecología, Royal Botanic Gardens, Kew. U. K., Villum Fonden. Denmark, Aarhus University. Denmark, James Hutton Institute. U. K., National Institute of Agricultural Botany (NIAB). U. K., Zuntini, Alexandre R., Carruthers, Tom, Maurin, Olivier, Bailey, Paul C., Leempoel, Kevin, Brewer, Grace E., Arista Palmero, Montserrat, Ariza Molina, María Jesús, Arroyo Marín, Juan, De Castro Mateo, Alejandra, Escudero Lirio, Marcial, Valle García, José Carlos del, and Baker, William J.

Abstract

Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods1,2. A robust understanding of angiosperm evolution is required to explain their rise to ecological dominance. So far, the angiosperm tree of life has been determined primarily by means of analyses of the plastid genome3,4. Many studies have drawn on this foundational work, such as classification and first insights into angiosperm diversification since their Mesozoic origins5,6,7. However, the limited and biased sampling of both taxa and genomes undermines confidence in the tree and its implications. Here, we build the tree of life for almost 8,000 (about 60%) angiosperm genera using a standardized set of 353 nuclear genes8. This 15-fold increase in genus-level sampling relative to comparable nuclear studies9 provides a critical test of earlier results and brings notable change to key groups, especially in rosids, while substantiating many previously predicted relationships. Scaling this tree to time using 200 fossils, we discovered that early angiosperm evolution was characterized by high gene tree conflict and explosive diversification, giving rise to more than 80% of extant angiosperm orders. Steady diversification ensued through the remaining Mesozoic Era until rates resurged in the Cenozoic Era, concurrent with decreasing global temperatures and tightly linked with gene tree conflict. Taken together, our extensive sampling combined with advanced phylogenomic methods shows the deep history and full complexity in the evolution of a megadiverse clade.

Published
2024

4. Global Analysis of Poales Diversification – Parallel Evolution in Space and Time into Open and Closed Habitats

Author

Universidad de Sevilla. Departamento de Biología Vegetal y Ecología, UK Research & Innovation (UKRI), Biotechnology and Biological Sciences Research Council (BBSRC), Ministry of Education, Youth and Sports. Czech Republic, United States Department of Agriculture (USDA), National Science Foundation (NSF). United States, Programa de apoyo a Proyectos de Investigacion e Innovacion Tecnologica (PAPIIT) Universidad Nacional Autonoma de Mexico, Consejo Nacional de Humanidades, Ciencias y Tecnologías (CONAHCYT). México, Ministerio de Ciencia, Innovación y Universidades (MICINN). España, Universidad Nacional Autónoma de México, Royal Botanic Gardens, Kew, Elliott, Tammy L., Spalink, Daniel, Larridon, Isabel, Zuntini, Alexandre Rizzo, Escudero Lirio, Marcial, Hackel, Jan, Barrett, Russell L., Martín Bravo, Santiago, Márquez Corro, José Ignacio, Granados Mendoza, Carolina, Muasya, A. Muthama, Universidad de Sevilla. Departamento de Biología Vegetal y Ecología, UK Research & Innovation (UKRI), Biotechnology and Biological Sciences Research Council (BBSRC), Ministry of Education, Youth and Sports. Czech Republic, United States Department of Agriculture (USDA), National Science Foundation (NSF). United States, Programa de apoyo a Proyectos de Investigacion e Innovacion Tecnologica (PAPIIT) Universidad Nacional Autonoma de Mexico, Consejo Nacional de Humanidades, Ciencias y Tecnologías (CONAHCYT). México, Ministerio de Ciencia, Innovación y Universidades (MICINN). España, Universidad Nacional Autónoma de México, Royal Botanic Gardens, Kew, Elliott, Tammy L., Spalink, Daniel, Larridon, Isabel, Zuntini, Alexandre Rizzo, Escudero Lirio, Marcial, Hackel, Jan, Barrett, Russell L., Martín Bravo, Santiago, Márquez Corro, José Ignacio, Granados Mendoza, Carolina, and Muasya, A. Muthama

Abstract

Poales are one of the most species-rich, ecologically and economically important orders of plants and often characterise open habitats, enabled by unique suites of traits. We test six hypotheses regarding the evolution and assembly of Poales in open and closed habitats throughout the world, and examine whether diversification patterns demonstrate parallel evolution. We sampled 42% of Poales species and obtained taxonomic and biogeographic data from the World Checklist of Vascular Plants database, which was combined with open/closed habitat data scored by taxonomic experts. A dated supertree of Poales was constructed. We integrated spatial phylogenetics with regionalisation analyses, historical biogeography and ancestral state estimations. Diversification in Poales and assembly of open and closed habitats result from dynamic evolutionary processes that vary across lineages, time and space, most prominently in tropical and southern latitudes. Our results reveal parallel and recurrent patterns of habitat and trait transitions in the species-rich families Poaceae and Cyperaceae. Smaller families display unique and often divergent evolutionary trajectories. The Poales have achieved global dominance via parallel evolution in open habitats, with notable, spatially and phylogenetically restricted divergences into strictly closed habitats. © 2023 The Authors. New Phytologist

Published
2023

5. Index Kewensis

Author

Royal Botanic Gardens, Kew, Challis, Katherine May 1961, Davies, Rosemary Anne 1952, Royal Botanic Gardens, Kew. Herbarium, Royal Botanic Gardens Kew, Library, Art & Archives, Royal Botanic Gardens, Kew, Challis, Katherine May 1961, Davies, Rosemary Anne 1952, and Royal Botanic Gardens, Kew. Herbarium

Subjects
Nomenclature, Synonyms

6. Index Kewensis.

Author

Royal Botanic Gardens, Kew, Challis, Katherine May 1961, Davies, Rosemary Anne 1952, Royal Botanic Gardens, Kew. Herbarium, Royal Botanic Gardens Kew, Library, Art & Archives, Royal Botanic Gardens, Kew, Challis, Katherine May 1961, Davies, Rosemary Anne 1952, and Royal Botanic Gardens, Kew. Herbarium

Subjects
Nomenclature, Synonyms

9. Index Kewensis. names of seed-bearing plants at the rank of family and below published between January 1981 and the end of 1985 with some omissions from earlier years /

Author

Royal Botanic Gardens, Kew, Bence, T. A., Challis, Katherine May 1961, Davies, Rosemary Anne 1952, Pinner, J. L. M., Royal Botanic Gardens Kew, Library, Art & Archives, Royal Botanic Gardens, Kew, Bence, T. A., Challis, Katherine May 1961, Davies, Rosemary Anne 1952, and Pinner, J. L. M.

Subjects
Nomenclature, Synonyms
Published
1987

10. A synopsis of Thai Piper (Piperaceae)

Author

David Simpson, Chalermpol Suwanphakdee, Trevor R. Hodkinson, Pranom Chantaranothai, and Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey, Tw Ae, Uk.

Subjects
Piper, biology, Traditional medicine, Forestry, Plant Science, Piperaceae, biology.organism_classification, Ecology, Evolution, Behavior and Systematics
Published
2020
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11. Kew Record Book (1793-1809)

Author

Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, and Royal Botanic Gardens, Kew

Subjects
Royal Botanic Gardens, Kew
Published
1793

12. Museum of Economic Botany, Kew. Specimens distributed 1901-1990.

Author

Angel, Rosemary Constance Reeve 1925-2012, Hill, Arthur W. Sir (Arthur William), 1875-1941, Hillier, John Masters c1861-1930, Holland, John Henry 1869-1950, Howes, F. N. (Frank Norman) 1901-1973, Hutchinson, John 1884-1972, Morris, D. Sir, (Daniel), 1844-1933, Ponsonby, Laura 1935-2016, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Angel, Rosemary Constance Reeve 1925-2012, Hill, Arthur W. Sir (Arthur William), 1875-1941, Hillier, John Masters c1861-1930, Holland, John Henry 1869-1950, Howes, F. N. (Frank Norman) 1901-1973, Hutchinson, John 1884-1972, Morris, D. Sir, (Daniel), 1844-1933, Ponsonby, Laura 1935-2016, and Royal Botanic Gardens, Kew

Subjects
Economic Botany Collection, Royal Botanic Gardens, Kew
Published
1901

13. Museum of Economic Botany, Kew. Specimens distributed 1881-1901.

Author

Hillier, John Masters c1861-1930, Jackson, John Reader 1837-1920, Morris, D. Sir, (Daniel), 1844-1933, Thiselton-Dyer, William T. (William Turner), 1843-1928, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Hillier, John Masters c1861-1930, Jackson, John Reader 1837-1920, Morris, D. Sir, (Daniel), 1844-1933, Thiselton-Dyer, William T. (William Turner), 1843-1928, and Royal Botanic Gardens, Kew

Subjects
Economic Botany Collection, Royal Botanic Gardens, Kew
Published
1881

14. Index Kewensis plantarum phanerogamarum.

Author

Bence, T. A., Brenan, J. P. M., 1917-1985, Davies, R. A., Durand, Th. (Théophile), 1855-1912, Heslop-Harrison, J. (John), Hill, Arthur W. Sir, (Arthur William), 1875-1941, Lloyd, K. M., Pinner, J. L. M., Prain, D. (David), 1857, Salisbury, E. J. Sir, (Edward James), 1886, Taylor, George, 1904-1993, Thiselton-Dyer, William T. 1843-1928, Royal Botanic Gardens, Kew. Herbarium, Royal Botanic Gardens Kew, Library, Art & Archives, Bence, T. A., Brenan, J. P. M., 1917-1985, Davies, R. A., Durand, Th. (Théophile), 1855-1912, Heslop-Harrison, J. (John), Hill, Arthur W. Sir, (Arthur William), 1875-1941, Lloyd, K. M., Pinner, J. L. M., Prain, D. (David), 1857, Salisbury, E. J. Sir, (Edward James), 1886, Taylor, George, 1904-1993, Thiselton-Dyer, William T. 1843-1928, and Royal Botanic Gardens, Kew. Herbarium

Subjects
Indexes, Nomenclature, Plants, Spermatophyta
Published
1901

15. Antarctic journal 1839-43.

Author

Hooker, Joseph Dalton, Sir, 1817-1911, Ross, James Clark, Sir 1800-1862, Great Britain. Admiralty, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Hooker, Joseph Dalton, Sir, 1817-1911, Ross, James Clark, Sir 1800-1862, Great Britain. Admiralty, and Royal Botanic Gardens, Kew

Subjects
Antarctica, Campbell Island/Motu Ihupuku (N.Z.), Chatham Islands, Diaries, Expeditions, Falkland Islands, Lord Auckland Islands, New Zealand, Plant collecting, Saint Helena, Tasmania, Tierra del Fuego (Argentina and Chile)
Published
1839

18. Index Kewensis plantarum phanerogamarum. nomina et synonyma omnium generum et specierum ab initio anni MDCCCCXXXVI usque ad finem anni MDCCCCXL nonnulla etiam antea edita complectens /

Author

Hill, Arthur W. Sir (Arthur William), 1875-1941, Salisbury, E. J. Sir (Edward James), 1886, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Hill, Arthur W. Sir (Arthur William), 1875-1941, Salisbury, E. J. Sir (Edward James), 1886, and Royal Botanic Gardens, Kew

Subjects
Nomenclature, Synonyms
Published
1947

19. Index Kewensis plantarum phanerogamarum : nomina et synonym omnium generum et specierum a linnaeo usque as annum MDCCLXXXV complectans nomine recepro auctore patria unicuique planta subjectis : sumptibus beati Caroli Roberti Darwin ductu et consilio Josephi D. Hooker.

Author

Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, Sir 1817-1911, Jackson, Benjamin Daydon 1846-1927, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, Sir 1817-1911, Jackson, Benjamin Daydon 1846-1927, and Royal Botanic Gardens, Kew

Subjects
Nomenclature, Synonyms
Published
1893

24. Index Kewensis plantarum phanerogamarum : nomina et synonym omnium generum et specierum a linnaeo usque as annum MDCCLXXXV complectans nomine recepro auctore patria unicuique planta subjectis : sumptibus beati Caroli Roberti Darwin ductu et consilio Josephi D. Hooker

Author

Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, 1817-1911, Jackson, Benjamin Daydon, 1846-1927, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, 1817-1911, Jackson, Benjamin Daydon, 1846-1927, and Royal Botanic Gardens, Kew

Subjects
Nomenclature, Synonyms

25. Index Kewensis plantarum phanerogamarum : nomina et synonym omnium generum et specierum a linnaeo usque as annum MDCCLXXXV complectans nomine recepro auctore patria unicuique planta subjectis : sumptibus beati Caroli Roberti Darwin ductu et consilio Josephi D. Hooker

Author

Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, 1817-1911, Jackson, Benjamin Daydon, 1846-1927, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, 1817-1911, Jackson, Benjamin Daydon, 1846-1927, and Royal Botanic Gardens, Kew

Subjects
Nomenclature, Synonyms

29. Index Kewensis plantarum phanerogamarum : nomina et synonym omnium generum et specierum a linnaeo usque as annum MDCCLXXXV complectans nomine recepro auctore patria unicuique planta subjectis : sumptibus beati Caroli Roberti Darwin ductu et consilio Josephi D. Hooker

Author

Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, 1817-1911, Jackson, Benjamin Daydon, 1846-1927, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, 1817-1911, Jackson, Benjamin Daydon, 1846-1927, and Royal Botanic Gardens, Kew

Subjects
Nomenclature, Synonyms

39. Index Kewensis plantarum phanerogamarum. nomina et synonyma omnium generum et specierum ab initio anni MDCCCCXXXVI usque ad finem anni MDCCCCXL nonnulla etiam antea edita complectens

Author

Hill, Arthur William, (Sir) 1875-1941, Salisbury, E. J. Sir, (Edward James), 1886-1978, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Hill, Arthur William, (Sir) 1875-1941, Salisbury, E. J. Sir, (Edward James), 1886-1978, and Royal Botanic Gardens, Kew

Subjects
Nomenclature, Synonyms

40. Index Kewensis plantarum phanerogamarum : nomina et synonym omnium generum et specierum a linnaeo usque as annum MDCCLXXXV complectans nomine recepro auctore patria unicuique planta subjectis : sumptibus beati Caroli Roberti Darwin ductu et consilio Josephi D. Hooker

Author

Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, 1817-1911, Jackson, Benjamin Daydon, 1846-1927, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Darwin, Charles, 1809-1882, Hooker, Joseph Dalton, 1817-1911, Jackson, Benjamin Daydon, 1846-1927, and Royal Botanic Gardens, Kew

Subjects
Nomenclature, Synonyms

44. Kew Record Book (1793-1809)

Author

Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, and Royal Botanic Gardens, Kew

Subjects
Royal Botanic Gardens, Kew

45. Antarctic journal 1839-43.

Author

Hooker, Joseph Dalton, 1817-1911, Ross, James Clark, Sir, 1800-1862, Great Britain. Admiralty, Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, Hooker, Joseph Dalton, 1817-1911, Ross, James Clark, Sir, 1800-1862, Great Britain. Admiralty, and Royal Botanic Gardens, Kew

Subjects
Antarctica, Campbell Island/Motu Ihupuku (N.Z.), Chatham Islands, Diaries, Expeditions, Falkland Islands, Lord Auckland Islands, New Zealand, Plant collecting, Saint Helena, Tasmania, Tierra del Fuego (Argentina and Chile)

46. Museum of Economic Botany, Kew. School letters

Author

Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, and Royal Botanic Gardens, Kew

Subjects
Economic Botany Collection, Royal Botanic Gardens, Kew

47. Museum of Economic Botany, Kew. School letters

Author

Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, and Royal Botanic Gardens, Kew

Subjects
Economic Botany Collection, Royal Botanic Gardens, Kew

48. Museum of Economic Botany, Kew. School letters

Author

Royal Botanic Gardens, Kew, Royal Botanic Gardens Kew, Library, Art & Archives, and Royal Botanic Gardens, Kew

Subjects
Economic Botany Collection, Royal Botanic Gardens, Kew

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