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Fokienia hodginsii (F. hodginsii), belonging to the genus Fokienia of the Cupressaceae. F. hodginsii has significant application value due to its wood properties and great research value in evolutionary studies as a gymnosperm. However, the genome of F. hodginsii remains unknown due to the large size of gymnosperms genome. Pacific Bioscience sequencing, Hi‐C mapping, whole‐genome Bisulfite Sequencing (BS‐Seq), long‐read isoform sequencing (Iso‐Seq), direct RNA sequencing (DRS), quantitative proteomics, and metabonomics analysis are employed to facilitate genome assembly, gene annotation, and investigation into epigenetic mechanisms. In this study, the 10G F. hodginsii genome is assembled into 11 chromosomes. Furthermore, 50 521 protein‐coding genes are annotated and determined that 65% of F. hodginsii genome comprises repetitive sequences. It is discovered that transposable element (TE)‐including introns is associated with higher expression. The DNA methylome of F. hodginsii reveals that xylem has a higher DNA methylation level compared to callus. Moreover, DRS reveals the significant alterations in RNA full‐length ratio, which potentially associated with poly(A) length (PAL) and alternative polyadenylation (APA). Finally, the morphology measurement and metabonomics analysis revealed the difference of 14 cultivars. In summary, the genomes and epigenetics datasets provide a molecular basis for callus formation in the gymnosperm family. [ABSTRACT FROM AUTHOR]

China's rare and endangered bamboo species belonging to the Indocalamus genus, specifically Indocalamus decorus Q. H. Dai, Indocalamus hirsutissimus Z. P. Wang & P. X. Zhang, and Indocalamus pedalis (Keng) P. C. Keng, possess notable value in biodiversity conservation and have significant potential for use in landscape design. Using an enhanced MaxEnt model, this study forecasted shifts in the species' potential range under four separate climate scenarios (SSP1-RCP2.6, SSP2-RCP4.5, SSP3-RCP7.0, and SSP5-RCP8.5), considering both the historical period (1970–2000, referred to as "the current period") and upcoming timeframes (2021–2040, 2041–2060, 2061–2080, and 2081–2100). The analysis disclosed that the present total potential habitat area for these species is approximately 251.79 × 104 km2, with high, medium, and low suitability areas occupying 0.15 × 104 km2, 125.39 × 104 km2, and 126.26 × 104 km2, respectively. The minimum temperature of the coldest month emerged as the critical determinant of their potential habitat distribution. Expected climate changes are likely to increase the suitable habitat for these species, although areas with low suitability might slightly diminish, with Guizhou and Chongqing showing the least impact. The distribution centers of suitable habitats for the three plant species consistently exhibit a westward shift under various climate scenarios. These results contribute valuable insights for the spatial distribution, continuous monitoring, sustainable management, and ex situ conservation in response to climate change. [ABSTRACT FROM AUTHOR]

Chamaecyparis hodginsii seedlings undergo significant changes during growth due to different nutrient environments and adjacent plant competition, which is evident in the physiological plasticity changes in their roots. Therefore, in this experiment, 20 one-year-old elite C. hodginsii family seedlings were selected as the test objects, and the different nutrient environments and adjacent plant competition environments in nature were artificially simulated. Four nutrient environments (N heterogeneous nutrient environment, P heterogeneous nutrient environment, K heterogeneous nutrient environment, and homogeneous environment) and three planting patterns (single plant, conspecific neighbor, and heterospecific neighbor) were set up to determine the differences in root physiological indexes and plasticity of different family seedlings, and the families and treatment combinations with higher comprehensive evaluation were selected. The transcriptome sequencing of fine roots of C. hodginsii under different treatments was performed to analyze the differentially expressed genes. The results showed that the root activity, antioxidant enzyme activity, and nutrient element content of C. hodginsii seedlings in the N and P heterogeneous environments were higher than those in the homogeneous nutrient environment, while there was no significant difference between the K heterogeneous nutrient environment and the homogeneous environment, but MDA content was higher than that in other nutrient environments. The root activity and antioxidant enzyme activity in the competitive patterns were generally higher than those in the single plant and reached the peak in the heterospecific neighbor. The root physiological plasticity index of line 490 was the highest, but the comprehensive evaluation of root physiological indexes of lines 539 and 535 was better. The pattern with the highest comprehensive evaluation score was P heterogeneous nutrient environment × heterospecific neighbor. The effects of the N and P heterogeneous nutrient environments on root transcriptome genes were similar, which significantly increased DNA transcription and regulatory factor activity, while K heterogeneous nutrient environment focused on the regulation of root enzyme activity. The heterogeneous nutrient environment induces the conduction of hormone signals in the roots of C. hodginsii and induces the synthesis of phenylpropanone. The biosynthesis of phenylpropanone in the roots of C. hodginsii will increase significantly under competitive patterns. In summary, the N and P heterogeneous nutrient environments and the heterospecific neighbor can improve the root physiological indexes of C. hodginsii families, and the root physiological indexes of lines 539 and 535 are the best. The nutrient environment and competition pattern mainly affect the root system to transmit hormone signals to regulate enzyme activity. [ABSTRACT FROM AUTHOR]

The growth dynamics of Ma bamboo (Dendrocalamus latiflorus Munro) are intricately linked to nitrogen availability, a pivotal nutrient. Escalating global nitrogen deposition, primarily driven by anthropogenic factors, is reshaping nutrient fluxes and productivity within forest and bamboo ecosystems. Such alterations bear significant implications for the growth equilibrium and yields of rapid-growth species such as Ma bamboo, thereby influencing their sustainable management strategies. This investigation delves into the responses of Ma bamboo under varying nitrogen deposition scenarios (0 g·clump−1, 11.2 g·clump−1, 13.5 g·clump−1, and 22.5 g·clump−1), examining stoichiometric attributes in bamboo shoots, leaves, and soil across distinct growth phases. Our empirical findings reveal that in the early growth stage, nitrogen enrichment markedly augmented N and P concentrations in the foliage and shoots, alongside a corresponding enhancement in soil P content. This was paralleled by a substantial reduction in the C:N ratio in leaves and the C:P ratio in shoots and soil, indicating an amplified uptake of P and N in both plant and soil matrices. During the middle stage, all nitrogen treatments boosted nitrogen levels across various plant tissues, while concurrently, soil C content exhibited a notable decline with increased nitrogen supplementation. In the late stage, leaf and soil N content continued to ascend; however, alterations in C content in both soil and leaves were not pronounced. Contrastingly, N and P levels in shoots showed a gradual decrement. Yield assessments disclosed that during the early stage, the N3 treatment (22.5 g·clump−1) not only delayed shoot emergence by 14 days but also surged the yield by 115.87% in comparison to the control (CK). In the late stage, the N2 treatment (13.5 g·clump−1) extended emergence duration by 10 days, with the yield apex under N3 treatment (22.5 g·clump−1) evidencing a 116.67% yield augmentation over CK. In summation, this study elucidates the stoichiometric balancing and distribution strategies within the plant–soil system of Ma bamboo, investigating its adaptability and responsive feedback to diverse nitrogen deposition gradients. This research contributes to a deeper understanding of plant nutrient adaptation mechanisms in the context of nitrogen deposition, enriches the discourse on plant population stoichiometry, and offers valuable insights and scientific underpinnings for broader-scale community or ecosystem stoichiometry studies. [ABSTRACT FROM AUTHOR]

To investigate the morphological characteristics and nutrient content of bamboo whip systems in the Wuyi Mountain Moso bamboo (Phyllostachys edulis) forest in response to enclosure succession. The mixed Moso bamboo forests in the Wuyi Mountain Nature Reserve with 0, 4, 6, 11, 16, and 41 enclosure years were taken as the object of investigation. All the bamboo whips in the 2 m × 2 m sample plots were excavated layer-by-layer according to the soil layers of 0–20 cm, 20–40 cm, and 40–60 cm, and a total of 54 plots were dug. The morphological characteristics and nutrient contents of the Moso bamboo whips in the different soil layers were analyzed and evaluated. Enclosure management measures can not only effectively improve vegetation coverage, biodiversity, and biomass, but also improve soil moisture and nutrient status, indirectly affecting the vegetation, which is of great significance for preventing soil erosion. The results showed that the whip number, whip diameter, flagella number, whip length, and whip weight in the 0–20 cm soil layer were significantly increased by 169.2%, 11.0%, 197.5%, 113.7%, and 109.0% (p < 0.05), respectively, compared with CK after 41 years of enclosure. The average internode length was significantly decreased by 27.9% (p < 0.05) compared to CK after 41 years of enclosure. In the 20–40 cm soil layer, the whip diameter increased by 9.7% after 41 years of enclosure compared with CK, but the whip number, flagella number, whip length, and whip weight were significantly reduced after 16 and 41 years of enclosure compared to CK (p < 0.05). In the 40–60 cm soil layer, the whip number, number of flagella, and whip length increased significantly after 6 and 11 years of enclosure compared with CK (p < 0.05). In the 0–20 cm soil layer, the contents of total nitrogen, total phosphorus, and total potassium in CK were higher than those in other enclosure years, and the soluble sugar content in CK was significantly higher than that in the enclosures of 4, 6, 11, and 41 years by 39.8%, 37.9%, 34.4%, and 34.0% (p < 0.05). The organic carbon content was significantly increased by 14.8%, 12.7%, 7.2%, and 7.1% (p < 0.05) after 4, 6, 11, and 41 years of enclosure compared with CK, respectively. The starch content was significantly increased by 34.1%, 23.0%, and 62.7% (p < 0.05) after 6, 16, and 41 years of enclosure compared with CK, respectively. In the 20–40 cm and 40–60 cm soil layers, the total nitrogen content and soluble sugar content in CK were significantly lower than that in the enclosures of 4 years (p < 0.05), the total phosphorus and total potassium content in CK were significantly higher than that in the enclosures of 41 years (p < 0.05), and the organic carbon content and starch content in CK were significantly higher than that in the enclosures of 6 years (p < 0.05). In summary, enclosure measures were implemented for Moso bamboo forests in the Wuyi Mountain Nature Reserve, which promote the growth of Moso bamboo whips and optimize the structure of bamboo whips. [ABSTRACT FROM AUTHOR]

Most bamboos die after flowering, and the molecular mechanisms responsible for flowering is poorly understood. The MIKCc-type MADS-box family gene is involved in the flowering process. To explore the mechanism of the MIKCc-type MADS-box gene and phytohormone regulation in the flowering of Dendrocalamus latiflorus Munro (D. latiflorus), characterized by extremely rapid growth and widely cultivated woody bamboo, we initially did a genome-wide analysis of the MIKCc-type MADS-box gene in D. latiflorus. In the meantime, transcriptome analysis was performed using the floral organs. A total of 170 MIKCc-Type MADS-Box genes were identified and divided into 15 categories. The cis-acting element analysis in promoters regions revealed that MIKC-type MADS-box family genes were associated with hormones, including auxin, abscisic acid (ABA), gibberellin (GA) and jasmonic acid (JA), which was found at 79, 476, 96, 486 sites and cover 61, 103, 73, 128 genes. Genome synteny analysis showed subgenome AA and BB were better than CC and obtained 49, 40, 39 synteny genes compared with Oryza sativa (O. sativa). In transcriptome analysis of floral organs, the enriched pathway from DEGs included circadian, vernalization and gibberellin pathways associated with the flowering process. We found that the jasmonic acid synthesis gene is highly expressed in the pistil, which may be the cause of Ma bamboo pollen abortion. The expression profile showed that most MIKC-type MADS-box genes exhibited high expression in flower organs. The consequences of this study will provide insight into the irregular flowering and low pollen counts of Ma bamboo. [ABSTRACT FROM AUTHOR]

Dendrocalamus brandisii (Munro) Kurz, D. minor var. amoenus (Q. H. Dai et C. F. Huang) Hsueh et D. Z. Li, Bambusa oldhamii Munro and B. beecheyana var. pubescens (P. F. Li) W. C. Lin were used to stud)' the effects of dosage of super absorbent polymers (SAP) on physiology resistance of bamboo leaves in order to provide a theoretical basis for the application of SAP in coastal protection bamboo forests and the introduction of dominant bamboo species. The results showed that chlorophyll content, soluble protein content, superoxide dismutase (SOD) and peroxidase (POD) activities of D. brandisii, B. oldhami and B. beecheyana increased firstly and then decreased with the increase of the amount of SAP, while D. minor showed a continuous upward trend. Soluble sugar content of D. brandisii and B. beecheyana increased firstly and then decreased with the increase of the amount of SAP, while B. oldhami and D. minor showed a continuous upward trend. The electrolyte permeability rate of D. brandisii, B. oldhami and B. beecheyana decreased firstly and then increased with the increase of the amount of SAP, while D. minor showed a continuous downtrend. Malondialdehyde (MDA) content of D. brandisii showed the same trend with its electrolyte permeability rate, while other three bamboo species showed a continuous downtrend. According to the results of principal component analysis, the optimum dosage SAP on D. brandisii, D. minor, B. beecheyana and B. oldham was 30, 90, 60 and 60 kg⋅hm-2, respectively. The best effect of using SAP was D. brandisii, and the effect on D. minor was the worst. [ABSTRACT FROM AUTHOR]

Climate change due to greenhouse gas (GHG) emissions is one of the global environmental matters of the 21st century. Biochar (BC) amendments have been proposed as a potential solution for improving soil quality and to mitigate GHGs emissions. Therefore, we evaluated the influence of different BCs on soil CO 2 and N 2 O emissions in an outdoor pot experiment. The soil was mixed with three different types of BCs; bamboo, hardwood, and rice straw BCs as BB, BH, and BR, respectively, and control as B0 with four levels (0, 5, 20, and 80 g kg -1 of soil). Gas samples were collected on a bi-monthly basis for six months. A polyvinyl chloride (PVC) static chamber was placed on each replicate to collect the gas samples at 15, 30, 45, and 60 min, respectively. Compared to B0, the lowest cumulative N 2 O emissions were observed in BH80 (11%) followed by BH20, BH5, and BR80. However, for cumulative CO 2 emissions, B0 and BC treatments showed no significant differences except for BB80 (>11%) and BB5 (<2%). BC type and level both had a significant (P < 0.001) impact on the cumulative N 2 O emissions with a significant interaction (P < 0.001). However, cumulative CO 2 emissions were unaffected by BC type but BC level showed a significant influence on cumulative CO 2 emissions (P < 0.05) and there was a significant (P < 0.001) interaction between the BC type and level on cumulative CO 2 emissions. Overall, higher doses of BR and BB showed a pronounced effect on soil pH over BH. The soil pH and moisture showed a negative correlation with N 2 O emissions whereas soil temperature showed a positive correlation with the cumulative fluxes of N 2 O. Our results demonstrate that BC incorporation to soil may help to mitigate GHGs emissions but its influence may vary with BC type and level under different conditions and soil type., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier B.V. All rights reserved.)