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The distribution and organisation of benthic organisms on tropical reefs are typically heterogenous yet display distinct zonation patterns across depth gradients. However, there are few datasets which inform our understanding of how depth zonation in benthic community composition varies spatially among and within different reef systems. Here, we assess the depth zonation in benthic forereef slope communities in the Central Indian Ocean, prior to the back-to-back bleaching events in 2014–2017. We compare benthic communities between shallow (5–10 m) and deep (20–25 m) sites, at two spatial scales: among and within 4 atolls. Our analyses showed the variation in both major functional groups and hard coral assemblages between depth varied among atolls, and within-atoll comparisons revealed distinct differences between shallow and deep forereef slope communities. Indicator taxa analyses characterising the hard coral community between depths revealed a higher number of coral genera characteristic of the deep forereef slopes (10) than the shallow forereef slopes (6). Only two coral genera consistently associated with both depths across all atolls, and these were Acropora and Porites. Our results reveal spatial variation in depth zonation of benthic communities, potentially driven by biophysical processes varying across depths and atolls, and provide a baseline to understand and measure the impacts of future global climate change on benthic communities across depths.

Understanding how Marine Protected Areas (MPAs) improve conservation outcomes across anthropogenic pressures can improve the benefits derived from them. Effects of protection for coral reefs in the western and central Indian Ocean were assessed using size-spectra analysis of fish and the relationships of trophic group biomass with human population density. Length-spectra relationships quantifying the relative abundance of small and large fish (slope) and overall productivity of the system (intercept) showed inconsistent patterns with MPA protection. The results suggest that both the slopes and intercepts were significantly higher in highly and well-protected MPAs. This indicates that effective MPAs are more productive and support higher abundances of smaller fish, relative to moderately protected MPAs. Trophic group biomass spanning piscivores and herbivores, decreased with increasing human density implying restoration of fish functional structure is needed. This would require addressing fisher needs and supporting effective MPA management to secure ecosystem benefits for coastal communities.

Understanding sequestration of carbon by coastal ecosystems is central to addressing the role they play in climate change mitigation. To quantify this process, accurate measurements of CO2 fluctuation, coupled with variations in residence time of coastal water-bodies are required. Nearshore ecosystems, including coastal lagoons, may provide an effective sink for atmospheric carbon dioxide, particularly those containing productive biota such as seagrass. However, the rate and pattern of carbon sequestration in seagrass meadows across a range of environmental settings is still poorly constrained. In this study, we utilize a robust physical tidal model, along with biogeochemical dissolved inorganic carbon (DIC) assessment, to estimate water residence time and net sequestration of atmospheric CO2 in an intertidal lagoon containing a seagrass (Zostera noltii) meadow. Total alkalinity and pH measurements taken from advected water mass exchanged with the open ocean at inlet boundaries are used to calculate DIC and pCO2. A predictive model of hydrodynamics provides good approximation of mean water residence time to within 6 h (±3 s.d). Results indicate that during the daytime study period the lagoon is a sink for carbon, having a mean net ecosystem productivity (NEP) of 3.0 ± 0.4 mmol C m−2 hr−1. An equivalent diel NEP range of between 15.23 and −9.24 mmol C m−2 d−1 is calculated based on reported shallow water pelagic respiration rates. Moreover, approximately 4% of DIC availability occurs from atmospheric CO2 transfer to lagoon water. However, a negative diel rate of −82 ± 81 mmol C m−2 d−1 is found, assuming overnight respiration ascertained from converted Zostera noltii O2 utilization. We hypothesize that analogous regional nearshore ecosystems provide baseline study sites suitable to elucidate the carbon capture potential of planned, nearby tidal range energy schemes.

Background Coral reefs are rapidly changing in response to local and global stressors. Research to better understand and inform the management of these stressors is burgeoning. However, in situ studies of coral reef ecology are constrained by complex logistics and limited resources. Many reef studies are also hampered by the scale-dependent nature of ecological patterns, and inferences made on causal relationships within coral reef systems are limited by the scales of observation. This is because most socio-ecological studies are conducted at scales relevant to the phenomenon of interest. However, management often occurs across a significantly broader, often geopolitical, range of scales. While there is a critical need for incisive coral reef management actions at relevant spatial and temporal scales, it remains unclear to what extent the scales of empirical study overlap with the scales at which management inferences and recommendations are made. This systematic map protocol will evaluate this potential scale mismatch with the goal of raising awareness about the significance of effectively addressing and reporting the scales at which researchers collect data and make assumptions. Methods We will use the Collaboration for Environmental Evidence (CEE) systematic mapping guidelines to identify relevant studies using a framework-based synthesis to summarise the spatial and temporal scales of coral reef fish ecology research and the scales at which management inferences or recommendations are made. Using tested predefined terms, we will search for relevant published academic and grey literature, including bibliographic databases, web-based search engines, and organisational websites. Inclusion criteria for the evidence map are empirical studies that focus on coral reef fish ecological organisation and processes, those informing management interventions and policy decisions, and management documents that cite coral reef research for management decision-making. Study results will be displayed graphically using data matrices and heat maps. This is the first attempt to systematically assess and compare the scales of socio-ecological research conducted on coral reef systems with their management.

Underwater visual surveys represent an essential component of coastal marine research and play a crucial role in supporting the management of marine systems. However, logistical and financial considerations can limit the availability of survey data in some systems. While biologging camera tag devices are being attached to an increasing diversity of marine animals to collect behavioral information about the focal species, the ancillary imagery collected can also be used in analytical techniques developed for diver-based surveys. We illustrate this approach by extracting ancillary data from shark-borne camera tag deployments focused on the behavior of a White shark (Carcharodon carcharias) off Gansbaai, South Africa, and a Grey Reef shark (Carcharhinus amblyrhynchos) within the Chagos Archipelago. Within the giant kelp forest environment of Gansbaai we could determine the spatial density of kelp thali and underlying substrate composition. Within the coral reef environment, the animal-borne video allowed us to determine the approximate percent and type of benthic cover, as well as growth form and genus of corals down to the upper mesophotic zone. We also enumerated fish species-level abundance over reef flat and wall environments. We used established dive-survey methods to analyze video data and found the results to be broadly comparable in the two systems studied. Our work illustrates the broad applicability of ancillary animal-borne video data, which is analogous in type and quality to diver-based video data, for analysis in established marine community survey frameworks. As camera tags and associated biologging technologies continue to develop and are adapted to new environments, utilising these data could have wide-ranging applications and could maximise the overall cost–benefit ratio within biologging deployments.

Given the recent trend towards establishing very large marine protected areas (MPAs) and the high potential of these to contribute to global conservation targets, we review outcomes of the last decade of marine conservation research in the British Indian Ocean Territory (BIOT), one of the largest MPAs in the world. The BIOT MPA consists of the atolls of the Chagos Archipelago, interspersed with and surrounded by deep oceanic waters. Islands around the atoll rims serve as nesting grounds for sea birds. Extensive and diverse shallow and mesophotic reef habitats provide essential habitat and feeding grounds for all marine life, and the absence of local human impacts may improve recovery after coral bleaching events. Census data have shown recent increases in the abundance of sea turtles, high numbers of nesting seabirds and high fish abundance, at least some of which is linked to the lack of recent harvesting. For example, across the archipelago the annual number of green turtle clutches (Chelonia mydas) is ~ 20,500 and increasing and the number of seabirds is ~ 1 million. Animal tracking studies have shown that some taxa breed and/or forage consistently within the MPA (e.g. some reef fishes, elasmobranchs and seabirds), suggesting the MPA has the potential to provide long-term protection. In contrast, post-nesting green turtles travel up to 4000 km to distant foraging sites, so the protected beaches in the Chagos Archipelago provide a nesting sanctuary for individuals that forage across an ocean basin and several geopolitical borders. Surveys using divers and underwater video systems show high habitat diversity and abundant marine life on all trophic levels. For example, coral cover can be as high as 40–50%. Ecological studies are shedding light on how remote ecosystems function, connect to each other and respond to climate-driven stressors compared to other locations that are more locally impacted. However, important threats to this MPA have been identified, particularly global heating events, and Illegal, Unreported and Unregulated (IUU) fishing activity, which considerably impact both reef and pelagic fishes.

Parrotfish provide important ecological functions on coral reefs, including the provision of new settlement space through grazing and the generation of sediment through bioerosion of reef substrate. Estimating these functions at an ecosystem level depends on accurately quantifying the functional impact of individuals, yet parrotfish feeding metrics are only available for a limited range of sites, species and size classes. We quantified bite rates, proportion of bites leaving scars and scar sizes in situ for the dominant excavator (Cetoscarus ocellatus, Chlorurus strongylocephalus, Ch. sordidus) and scraper species (Scarus rubroviolaceus, S. frenatus, S. niger, S. tricolor, S. scaber, S. psittacus) in the central Indian Ocean. This includes the first record of scar frequencies and sizes for the latter three species. Bite rates varied with species and life phase and decreased with body size. The proportion of bites leaving scars and scar sizes differed among species and increased with body size. Species-level allometric relationships between body size and each of these feeding metrics were used to parameterize annual individual grazing and bioerosion rates which increase non-linearly with body size. Large individuals of C. ocellatus, Ch. strongylocephalus and S. rubroviolaceus can graze 200&ndash, 400 m2 and erode &gt, 500 kg of reef substrate annually. Smaller species graze 1&ndash, 100 m2 yr&minus, 1 and erode 0.2&ndash, 30 kg yr&minus, 1. We used these individual functional rates to quantify community grazing and bioerosion levels at 15 sites across the Maldives and the Chagos Archipelago. Although parrotfish density was 2.6 times higher on Maldivian reefs, average grazing (3.9 &plusmn, 1.4 m2 m&minus, 2 reef yr&minus, 1) and bioerosion levels (3.1 &plusmn, 1.2 kg m&minus, 1) were about 15% lower than in the Chagos Archipelago (4.5 &plusmn, 2.3 and 3.7 &plusmn, 3.0, respectively), due to the dominance of small species and individuals in the Maldives (90% &lt, 30 cm length). This demonstrates that large-bodied species and individuals contribute disproportionally to both grazing and bioerosion. Across all sites, grazing increased by 66 &plusmn, 5 m2 ha&minus, 1 and bioerosion by 109 &plusmn, 9 kg ha&minus, 1 for every kg increase in parrotfish biomass. However, for a given level of parrotfish biomass, grazing and bioerosion levels were higher on Maldivian reefs than in the Chagos Archipelago. This suggests that small-bodied fish assemblages can maintain ecosystem functions, but only if key species are present in sufficiently high numbers.

Coral reefs are a globally threatened ecosystem due to a range of anthropogenic impacts. Increasing sea surface temperatures associated with global warming are a particular threat, as corals grow close to their upper thermal limit. When this limit is exceeded for a sufficient length of time during thermal stress events, corals lose their algal symbionts, resulting in coral bleaching and possible mortality. Coral reefs have experienced the most severe and extended global bleaching event to date from 2014 to 2017. The most recent global climate models predict that similar global bleaching events are likely to become an annual occurrence by the middle of the present century. Current understanding of coral reef recovery following disturbance events is based around decadal to sub-decadal impacts, making the adaptive capacity of corals as bleaching events approach an annual frequency unknown. However, there is considerable spatial heterogeneity in bleaching impacts across a range of scales, from global reef provinces to local reef areas and between coral species. Understanding of the mechanisms responsible for this observed coral resilience to thermal stress is increasing in a variety of disciplines, with particular recent advances at the sub-cellular level, facilitated partly by technological developments. This understanding suggests that some resilience factors have the potential to operate within the predicted annual frequency of thermal stress events, whilst others act over longer time-scales. The ability of coral reef management actions to successfully support coral resilience is a significant challenge and requires increased empirical evidence to support and refine actions. However, in addition to essential global actions to reduce carbon dioxide emissions, protective actions can be strengthened by a focus on identifying reef locations that have the potential to exhibit resilience to thermal stress events, either via resisting them or recovering quickly following impact. Here, we present a spatially explicit overview of the potential resilience factors and mechanisms that can be considered in such an approach.

The atolls and coral banks of the Chagos Archipelago (British Indian Ocean Territory) in the central Indian Ocean were badly affected by the warm water event that started in 2015 and lasted for nearly two years. On these reefs, coral mortality was very severe, reducing coral cover to

The marine renewable energy industry is expanding globally in response to increased energy demands and the desire to curtail greenhouse gas emissions. Within the UK, Wales has the potential for the development of diverse marine renewable technologies, with a strong tidal range resource, areas of high tidal current energy, and a spatially limited wave energy resource. Targets have been set by the Welsh Government to increase the contribution of marine renewable energy to Wales' electricity generation, and the recent introduction of demonstration zones for tidal and wave energy aims to facilitate developers in device deployment. However, uncertainties remain about the potential impacts of devices, particularly for array scale deployments, planned at several sites, and for the extensive structures required to capture the tidal range resource. Here we review present knowledge of potential impacts, including physical, ecological and societal dimensions, and outline research priorities to provide a scientific basis on which to base decisions influencing the trajectory of Welsh marine renewable energy development.

Understanding the drivers of variability in the composition of fish assemblages across the Indo-Pacific region is crucial to support coral reef ecosystem resilience. Whilst numerous relationships and feedback mechanisms between the functional roles of coral reef fishes and reef benthic composition have been investigated, certain key groups, such as the herbivores, are widely suggested to maintain reefs in a coral-dominated state. Examining links between fishes and reef benthos is complicated by the interactions between natural processes, disturbance events and anthropogenic impacts, particularly fishing pressure. This study examined fish assemblages and associated benthic variables across five atolls within the Chagos Archipelago, where fishing pressure is largely absent, to better understand these relationships. We found high variability in fish assemblages among atolls and sites across the archipelago, especially for key groups such as a suite of grazer-detritivore surgeonfish, and the parrotfishes which varied in density over 40-fold between sites. Differences in fish assemblages were significantly associated with variable levels of both live and recently dead coral cover and rugosity. We suggest these results reflect differing coral recovery trajectories following coral bleaching events and a strong influence of ‘bottom-up’ control mechanisms on fish assemblages. Species level analyses revealed that Scarus niger, Acanthurus nigrofuscus and Chlorurus strongylocephalos were key species driving differences in fish assemblage structure. Clarifying the trophic roles of herbivorous and detritivorous reef fishes will require species-level studies, which also examine feeding behaviour, to fully understand their contribution in maintaining reef resilience to climate change and fishing impacts.

Outbreaks of the crown-of-thorns starfish (COTS), Acanthaster planci, have occurred at many locations throughout the Indo-Pacific and are a major contributor to widespread coral loss and reef degradation. The causes of outbreaks remain controversial, but are commonly attributed to anthropogenically elevated nutrients and/or over-fishing. If so, it seems unlikely that outbreaks would occur in reef systems that are largely isolated from anthropogenic disturbances. However, high densities of COTS were recently observed on reefs in the Chagos Archipelago, a remote group of atolls and banks within the central Indian Ocean, which experience very limited anthropogenic influence. Aggregations of COTS were first noticed at Eagle Island in 2012, which, although unquantified, appeared to be at outbreak levels, and very high densities (1624 km−2) were subsequently recorded at Danger Island in 2013. While these islands are uninhabited by humans, it is possible that nutrient inputs result from upwelling zones around the Archipelago, or high densities of breeding seabirds. Among islands within the Great Chagos Bank, densities of the red-footed booby Sula sula ranged from 8 to 7888 individuals km−2, with associated guano input ranging from 96 to 25,381 kg island−1 year−1. However, Danger and Eagle Islands where high COTS densities were recorded, had both high and low levels of guano production, respectively, which suggests that outbreaks may not be directly linked to guano nutrient enrichment. Other factors which might be responsible for intermittent COTS outbreaks should be considered in isolated reef systems such as the Chagos Archipelago.

Increasing recognition of non-natives as a threat to biodiversity and the functioning of marine ecosystems has brought with it the challenge of seeking novel management solutions. Hull fouling of recreational vessels is an important non-native vector, particularly in coastal areas where it is responsible for both introduction and secondary spread. This study introduces an in-water boat encapsulation system designed to limit transfer of marine non-natives, developed in response to the introduction of the ascidian Didemnum vexillum in Wales, UK. Here we describe the “decontamination berth”, examine the chemical concentrations required to eliminate D. vexillum and review biosecurity approaches for recreational vessels. Laboratory tests of treatment chemicals showed that acetic acid and sodium hypochlorite were equally effective in reducing D. vexillum growth following exposures of

Increasing recognition of the threat which invasive non-native species present to ecological and economic assets has led to a recent surge in international, regional and national policies. Within the European Union, a draft EU Regulation on the prevention and management of invasive alien species has been developed. The draft Regulation, published in 2013, recommends the creation of a list of invasive alien species of Union concern, wherein any Member State identifying newly establishing populations of these species must implement rapid eradication measures. The first recording of the invasive non-native ascidian Didemnum vexillum in Britain in 2008 in Wales, and subsequent eradication efforts, presents a timely opportunity to evaluate the United Kingdom׳s existing capability and capacity to undertake a rapid eradication in the marine environment in light of the draft EU Regulation, as well as highlighting some of the cross-border challenges facing the EU. Although the UK is often cited within Europe as having made significant progress in the field of invasion management, the lessons learned from the eradication process in Wales highlight that the UK is inadequately prepared to undertake rapid eradication measures in the marine environment and that the lack of a coordinated approach between nations has significant potential to devalue localised eradication efforts. A number of measures are discussed to enhance future capability both in the UK and the wider European Union including enhanced alerting mechanisms, science-based monitoring programmes to enable early detection, increased commitment of resources and the need for cross-border collaboration.

Land-use changes and associated deteriorations in water quality are cited as major drivers of marine ecosystem change, and can modify community abundance and diversity on coral reefs. This study uses palaeoecological data derived from a mid-Holocene age coral reef in the Wet Tropics region of Australia's Great Barrier Reef to develop a record of coral community composition and diversity, from a period that significantly pre-dates European settlement in the region. Major changes in catchment sediment and nutrient yields since European settlement have been documented, and thus the data presented provides a baseline against which to compare contemporary ecological datasets. Natural variations in coral assemblage composition, as preserved in core records, clearly occurred in this mid-Holocene reef and were associated with the reef shallowing to sea level as it accreted vertically. Comparisons between modern and mid-Holocene coral community data from equivalent water depths did not reveal marked shifts in coral community composition and diversity, suggesting the long-term persistence of a resilient coral assemblage over these time periods.

Skeletal density and porosity characteristics are key parameters for investigations into scleractinian coral growth and for assessing the effects of a range of anthropogenic influences on coral reefs. Typically, skeletal density is measured by using planar X-rays of thin slabs cut from mound-shaped colonies or, for branching forms, by using methods based on Archimedean principles. This paper describes a novel non-destructive technique based on micro-computed tomography (micro-CT) to measure porosity of branching coral skeleton. This approach incorporates methods for segmenting internal and external portions of branch and for distinguishing between skeleton and air, whilst accounting for the effects of beam hardening. Measurements were obtained from colonies of branching Acropora pulchra collected across a reef-flat transect at King Reef, central nearshore Great Barrier Reef. The results show significant variation in porosity within and among branches sampled from individual colonies, but not within a reef-flat transect. Micro-CT techniques yield comparable results to traditional methods based on Archimedean principles, but offer advantages in their suitability for a wider range of coral specimens because of the non-destructive nature of the technique and in their more rigorous control of model parameters that can bias results.

Micro-CT scanning techniques were used to investigate fine-scale variation in porosity along branch tips of Acropora pulchra. Porosity variation is a result of progressive thickening of skeletal elements away from the apical tip of branches, rather than changes in the spacing of skeletal elements. A linear fit was found to describe the relationship between distance along the tip and both porosity and skeletal thickness. The slope of the line obtained may relate to branch extension rates and allow retrospective data to be obtained from Acropora specimens. Skeletal morphology examined by 2D and 3D imaging shows a progressive gradation in thickness occurring in the axial corallite wall and thickness changes at a site of incipient branch formation. The application of the micro-CT technique to museum and fossil specimens is illustrated.

The expansion of Personal Watercraft (PWC) usage around the UK presents unique challenges to organisations responsible for managing coastal areas. This study examines the role of PWC clubs in effecting better management of the sport. Questionnaires and personal interviews with both PWC operators and local authorities were used to gain information on the current UK situation. Within the sample group 73% of participants were also PWC club members. The study suggests changing patterns of PWC usage in the UK, based on the increasing influence of PWC clubs. Coastal managers should be aware of the potential of clubs in conflict resolution.

Recreational diving on coral reefs is an activity that has experienced rapidly growing levels of popularity and participation. Despite providing economic activity for many developing coastal communities, the potential role of dive impacts in contributing to coral reef damage is a concern at heavily dived locations. Management measures to address this issue increasingly include the introduction of programmes designed to encourage environmentally responsible practices within the dive industry. We examined diver behaviour at several important coral reef dive locations within the Philippines and assessed how diver characteristics and dive operator compliance with an environmentally responsible diving programme, known as the Green Fins approach, affected reef contacts. The role of dive supervision was assessed by recording dive guide interventions underwater, and how this was affected by dive group size. Of the 100 recreational divers followed, 88 % made contact with the reef at least once per dive, with a mean (±SE) contact rate of 0.12 ± 0.01 per min. We found evidence that the ability of dive guides to intervene and correct diver behaviour in the event of a reef contact decreases with larger diver group sizes. Divers from operators with high levels of compliance with the Green Fins programme exhibited significantly lower reef contact rates than those from dive operators with low levels of compliance. The successful implementation of environmentally responsible diving programmes, which focus on influencing dive industry operations, can contribute to the management of human impacts on coral reefs.