Search

LIght Detection And Ranging (lidar) data have been widely used in the areas of ecological studies due to lidar’s ability to provide information on the vertical structure of vegetation in wildlife h...

Information on mussel reproductive life history, age, and growth is important for understanding evolutionary and ecological relationships and predicting how species will respond to conserva...

The United States Fish and Wildlife Service (USFWS) uses a Species Status Assessment (SSA) framework to inform Endangered Species Act (ESA) policy decisions. A major challenge for development of SSAs includes inconsistent or incomplete monitoring throughout a species' range, which can result from inadequate time and funding for data collection prior to final rulings. In 2014, the USFWS initiated an SSA for the Sprague's pipit (Anthus spragueii; hereafter pipit), a migratory songbird scheduled for consideration as Threatened or Endangered in fall 2015. At the time, researchers had no field data to identify the spatial distribution of habitat across the geographic extent of the pipit's wintering grounds or to forecast the species' response to probable future scenarios of environmental conditions or conservation efforts during winter. In addition, the timing of the ESA decision precluded range-wide surveys on the pipit's wintering grounds. We present an SSA case study to demonstrate how citizen science and remotely sensed data could be integrated to help inform time-sensitive policy decisions for species of conservation concern. We developed three independent estimates of potential pipit habitat, and we assumed that spatial congruence among models provided increased evidence of habitat likely to support our focal species. We do not suggest that our approach replace more robust analyses, but rather illustrate an alternative strategy to obtain baseline information for SSAs and other policy decisions when data and time are lacking.

North American porcupines (Erethizon dorsatum) have expanded their range into central Texas and are now frequent users of caves as den sites. What remains unknown is how caves affect their home range, and their local habitat preferences. This information is important for management decisions on Joint Base San Antonio – Camp Bullis where novel and abundant porcupine scat in caves could jeopardize federally endangered cave-obligate arthropods by allowing for the invasion of less specialized terrestrial species. To better understand porcupine home range and habitat use at Camp Bullis, we trapped four porcupines at cave entrances and fitted them with GPS collars. The 95% home range averaged 71.3 ha for females and measured 420.6 ha for the male. The 50% core habitat averaged 55.4 ha for females and measured 7.4 ha for the male. Porcupines typically stayed near the den-cave trap site except when visiting more diverse mixed forest patches. At the landscape and point levels, individuals selected for forested cover and avoided open areas. At the home range level, individuals selected for bare ground and roads, which were likely used to get from the cave den site to feed at mixed forest patches. Typically solitary, individuals in this study tolerated sharing a cave. Because of the small sample size and single sampling location, this study represents a pilot study and additional research is needed to establish concrete conclusions. Should cave managers need to limit the cave use by porcupines, a cave gate, exclosure, or reduction of forested cover would make caves less desirable.

Deer–vehicle collisions (DVCs) are a critical cause of mortality for the endangered Odocoileus virginianus clavium (Florida Key Deer; hereafter Key Deer). Extensive research has focused on large-scale Key Deer movements throughout their range and the corresponding relationship to DVCs (e.g., dispersal of juvenile males south across US Highway 1 [US 1]). Far less data are available about the relationships among short-term movement patterns (hourly and daily) of Key Deer, US 1 traffic patterns, and DVCs. We used global positioning system collars to track female Key Deer movements on short time scales on Big Pine Key in the Lower Florida Keys. We then cross-referenced this with US 1 traffic data and DVCs. We found a significant relationship between hourly female Key Deer movement and hourly DVCs throughout the 24-hour daily period (r = 0.505, P = 0.012). Hourly US 1 traffic patterns were significantly related to hourly DVCs only during night periods (r = 0.787, P = 0.012). This information will inform Key Deer management options such as variable timing of vehicle speed enforcement and warning lights along roadways.

Sylvilagus palustris hefneri (Lower Keys Marsh Rabbit [LKMR]) is an endangered subspecies of marsh rabbit found only in the Lower Florida Keys. In September 2017, Hurricane Irma was measured as a Category 4 storm when it passed through the center of the LKMR range causing significant damage to human infrastructure and natural habitats. To assess the impact of Hurricane Irma to LKMR and its habitat, we compared pre- and post-hurricane monitoring data. Overall, 82% of LKMR habitat patches were abandoned, the average number of pellets per sampling plot decreased 94%, and average patch pellet density decreased by 84% following Hurricane Irma. Generally, pellets were found in plots with greater open cover, an intermediate amount of herbaceous and woody cover, and areas with more standing water post-Hurricane Irma. We also observed a slight decrease in signs of Procyon lotor (Raccoon) and Didelphis virginiana (Virginia Opossum). The decrease in rabbit pellets detected after Hurricane Irma is likely attributed to both direct mortality from the storm and flooding, as well as indirect mortality from the loss of critical, salt-sensitive herbaceous cover. Because climate-change models suggest increases in future flooding and hurricane frequency, we recommend that wildlife managers continue to closely monitor the recovery of LKMR populations and their habitat to determine if more active management actions (e.g., habitat remediation, translocations, or captive breeding) are necessary.

Pituophis ruthveni (Louisiana Pinesnake) is one of the rarest snakes in the United States. Efforts to refine existing habitat models that help locate relictual populations and identify potential reintroduction sites are needed. To validate these models, more efficient methods of detection for this rare species must also be developed. Here we expand recent habitat suitability models based on edaphic factors to include mature Pinus (pine) stands that have not been cut for at least 30 years and likely have vegetation structure with the potential to support the species. Our model identified a total of 1652 patches comprising 180,050 ha of potentially suitable habitat, but only 16 (1%) of these patches were more than 1000 ha and considered worthy of conservation attention as potential reintroduction sites. We also visited potentially suitable habitat, as determined by our model, and used camera traps to survey for relictual populations at 7 areas in Texas. We observed 518 snakes of 18 species in 8,388,078 images taken from April to October 2016, but no Louisiana Pinesnakes were detected. The patchiness of the habitat model and failure to detect Louisiana Pinesnakes corroborate independent conclusions that most populations of the species are small, isolated, probably in decline, and possibly extirpated. In the context of this extreme rarity, we believe this study will help manage limited conservation resources by narrowing the search areas for relictual populations, providing a more cost-effective method of surveying those areas, and identifying the best sites for future reintroduction efforts.

The status of endangered Odocoileus virginianus clavium (Key Deer) on outer islands of Florida was unknown following several recent population declines. In response, we opportunistically monitored the western extent of the current range of Key Deer in Flordia using cameras and in-person observations to determine deer presence. We found evidence of Key Deer on islands at the far western edge of their current range such as Lower Sugarloaf Key, Saddlebunch Keys, Boca Chica Key, and the first documented occurrence of Key Deer on East Rockland Key. We recommend more intensive monitoring to determine the extent of the current range use and to calculate a range-wide abundance estimate.

Chagas disease, also known as American trypanosomiasis, is caused by the flagellate protozoan Trypanosoma cruzi. It is a significant health concern in South and Central America, where millions of people are infected or at risk of infection, and is an emerging health concern in the US. The occurrence of Chagas disease in natural environments is supported by mammal host species, but those primary species may vary based on geographic location. In South Texas, the primary host species for the disease is poorly understood, and required a field study to determine the spatial distribution of T. cruzi prevalence in free-ranging mammals. Our study objectives were to determine the spatial distribution and prevalence of T. cruzi parasites in free-ranging mammals. We compared T. cruzi prevalence among species, among vegetative communities, and among different topographies (i.e., floodplain versus upland). From December 2011 through December 2013, 450 blood and tissue samples from geolocated free-ranging wildlife mammal species were analyzed with the use of polymerase chain reaction to detect protozoan T. cruzi DNA. We also calculated mammal abundance with the use of mark-recapture methodology and recorded capture-site characteristics such as vegetation structure. We found that animals in grasslands had a significantly lower infection rate when summed across all species compared with animals in dense hardwoods and semi-improved woodlands (P=0.001). A higher percentage of infections were found in the lower-elevation floodplain-65% (28/43) of animals sampled, compared to upland areas-25% (9/36) of animals sampled. Our study suggested that common free-ranging meso-mammals supported T. cruzi in natural environments and are of public health concern in South Texas. Mitigation strategies should consider a range of management activities to include vegetation management, selective application of insecticides, and changes in human behavior in high-risk areas.

The red foxes (Vulpes vulpes) indigenous to the mountains of the western United States are high-elevation specialists that could face range reduction due to climatic warming, as well as potential encroachment, loss of adaptive alleles, and displacement by introduced nonnative red foxes. We investigated the genetic integrity of the native Rocky Mountain red fox (V. v. macroura) in Colorado through analysis of the composition, distribution, and patterns of gene flow between native and nonnative red fox populations along an elevational gradient. The study area spanned the high plains around Denver in the east to the alpine zone of the Rocky Mountains adjacent to Gunnison and Crested Butte in the west. We used microsatellites and mitochondrial DNA (mtDNA) from Colorado foxes, along with previously published reference data from other native western and nonnative populations, to evaluate the distribution of native versus nonnative ancestry and its relationship to elevation, distance, and landscape type. Nonnative red fox ancestry predominated in Denver and low-lying areas, whereas native ancestry was most prevalent at high elevations. The genetic integrity of foxes at higher elevations (i.e., within the historical native range) was greater in terms of mtDNA than nuclear DNA, consistent with higher male-mediated gene flow. Nonnative admixture was most pronounced in human-altered landscapes. Our findings provide baseline data necessary to monitor future trends of these Rocky Mountain red fox populations and highlight the potential for similar threats to affect genetic integrity of endangered montane red fox subspecies along the Pacific Crest.

Knowledge of meso-mammal cave use is essential for natural resource managers, particularly in the management of endangered cave invertebrates. Scat left by meso-mammals represents significant nutrient inputs into the oligotrophic cave environment which can disrupt the invertebrate species composition and ecology. Since little is known about what constitutes typical timing or frequency of meso-mammal visitation, current management practices are largely speculative. Central Texas caves were historically associated with raccoons Procyon lotor, but with the loss of large predators and encroachment of woody vegetation, the now naturalized North American porcupine Erethizon dorsatum has become an established part of the local ecosystems whose effect on cave biology remains unknown. Our objective with this study was to quantify meso-mammal cave use according to seasons, time of day, weather conditions, as well ecological and physical cave characteristics. We monitored 30 caves by placing trail cameras at cave entrances for one year on Joint Base San Antonio-Camp Bullis military base just north of San Antonio, Texas. North American porcupines, raccoons, and Virginia opossums Didelphis virginiana were the three most commonly photographed meso-mammals (>87%). All meso-mammal groups showed significantly different cave use according to season, weather, and cave characteristics. Data suggested most meso-mammals were using caves for denning while raccoons and Virginia opossums also were feeding on resident invertebrate and rodent populations. In particular, Virginia opossum and raccoon, both potential predators of endangered species, showed greater use of caves containing endangered species. The results from our study represent an initial step in understanding meso-mammal cave use in central Texas.

Scat of meso-mammals provides nutrients to cave-obligate species. If there are too few nutrient inputs, cave-obligate species have no resources, but too much and caves are invaded by terrestrial species. Our goal for this project was to determine what combination of variables most influence meso-mammal cave use by building a multinomial regression model using data collected from cave entrances in central Texas. Variables of importance in our model relate to cave accessibility, including the raccoons' (Procyon lotor) and Virginia opossums' (Didelphis virginiana) greater dexterity, and the added bulk from the North American porcupine's (Erethizon dorsatum) quills. Our model can be used to predict and manage meso-mammal cave use in central Texas. This will be especially useful in this region because North American porcupine have only recently expanded their range into central Texas and their prolific nutrient inputs, previously absent from the ecosystem, could endanger cave-obligate species.

Freshwater resources in arid and semi-arid regions are in extreme demand, which creates conflicts between needs of humans and aquatic ecosystems. The Rio Grande basin in the southwestern United States and northern Mexico exemplifies this issue, as much of its aquatic biodiversity is in peril as a result of human activities. Unionid mussels have been disproportionately impacted, though the specific factors responsible for their decline remain largely unknown. This is problematic because the Rio Grande basin harbors one federally endangered unionid mussel (Popenaias popeii, Texas Hornshell) plus two other mussel species (Potamilus metnecktayi, Salina Mucket; and Truncilla cognata, Mexican Fawnsfoot), which are also being considered for listing under the U.S. Endangered Species Act. To date, surveys for these species have not corrected for variability in detection so current range estimates may be inaccurate. Using single occupancy-modeling to estimate detection and occupancy at 115 sites along ~800 river kilometers of the Rio Grande in Texas, we found that detection probabilities were relatively high, indicating that our survey design was efficient. In contrast, the estimated occupancy was low, indicating that our focal species were likely rare within the Rio Grande drainage. In general, the predicted occupancy of our focal species was low throughout their respective ranges, indicating possible range declines. A comparison of currently occupied ranges to presumptive ranges underscores this point. The best-approximating models indicated that occupancy was influenced by habitat, water quantity and quality, and proximity to large-scale human activities, such as dams and major urban centers. We also discuss a series of conservation options that may not only improve the long-term prognosis of our focal species but also other aquatic taxa.