82 results on '"Rodrigues, TA"'
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2. RELATO DE EXPERIÊNCIA: ANÁLISE DA ADESÃO ÀS CONSULTAS MULTIPROFISSIONAIS NA FAIXA ETÁRIA DE 18 A 23 ANOS NA DOENÇA FALCIFORME
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Queiroz, AMM, primary, Soeiro, G, additional, Nascimento, ACD, additional, Rodrigues, TA, additional, Baima, M, additional, Bastos, JD, additional, and Netto, AR, additional
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- 2023
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3. The role of academic leagues as a strategy for pain education in Brazil
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Garcia JBS, Neto JOB, and Rodrigues TA
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Medical Education ,Pain Education ,Pain Management ,Chronic Pain ,Medicine (General) ,R5-920 - Abstract
João Batista Santos Garcia, José Osvaldo Barbosa Neto, Thiago Alves RodriguesExperimental Laboratory to the Study of Pain, Federal University of Maranhão, São Luis, Maranhão, BrazilPurpose: Chronic pain remains undertreated in both developed and developing countries. There are various factors involved in this acknowledged health problem, including lack of pain education. In Brazil, a particular approach was used to mitigate the deficit in pain education. The academic leagues of pain (ALPs) were formed as associations of health undergraduate students with the goal of encouraging students in educational activities, patient care, and pain research. The aim of this study was to evaluate how ALP works and its contribution to pain education and to the inclusion of students in practical and scientific research activities, as well as its legacy in the field of pain.Patients and methods: An electronic survey was directed to the leagues representatives to collect data referent to how the leagues operate, their individual approach towards pain education, patient care, research activities, and its impact on students after they graduate.Results: A total of 17 leagues were identified and responded to the survey. Only three of the involved universities offered study of pain as a discipline in their mandatory curriculum. Patient care activities were carried out by 59% of the leagues, 94% provided educational activities. Twelve leagues reported that students were involved in one to four research projects in pain, and 59% of those chose pain as their subject for post-graduation programs. And, 47% of the leagues had students that sought specialization or residency in pain after graduation.Conclusion: The Brazilian experience with academic leagues of pain has shown that it is possible to address curricular deficiencies in pain education through a strategy not well known in other countries.Keywords: medical education, pain education, pain management, chronic pain
- Published
- 2019
4. EMPREGO DE INTERPOLA����O PARA ESPACIALIZA����O DE DADOS PLUVIOM��TRICOS NO ESTADO DO MARANH��O
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J��nior, Admo Ramos Silva, Rodrigues, Ta��ssa Caroline Silva, Andrade, Juliane Borralho de, and Menezes, Ronaldo Haroldo Nascimento de
- Abstract
For the best management of water resources, it is necessary to conduct studies focused on meteorological variables, such as rainfall. This work aims to generate a digital model of rainfall for the climatic characterization of the State of Maranh��o. The deterministic interpolation method of the Inverse Weighted Distance - IDW was used. The interpolation was done using the QGis software, using historical averages of 34 years (1985 - 2019) of annual rainfall from 108 rainfall stations in the state and neighboring stations in other states. The results showed that the rains in the state of Maranh��o begin effectively from the month of October, evolving to a maximum peak in March, with a gradual reduction in the following months and the spatialization of data shows that the rains are concentrated in the north and northwest regions of the state, these regions have the highest rainfall indices and the driest regions are located in the south.
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- 2022
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5. Physical and Mental Aspects of Patients With Sickle Cell Disease: a Portrait of Quality of Life in a Developing Country
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Rodrigues Ta, Cartágenes MdSdS, and Rodrigues CFdA
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Gerontology ,Quality of life (healthcare) ,Portrait ,Mental aspects ,Developing country ,Disease ,Psychology - Abstract
OBJECTIVE This study aimed at analysing quality of life (QOL) indicators of patients with sickle cell disease (SCD) in treatment, investigating the epidemiological, socioeconomic and care situation provided to patients with SCD in the State of Maranhão, one of the poorest states of Brazil. METHODS: A cross-sectional study was carried out from March 2018 to February 2019, with the application of a generic quality of life questionnaire, SF-36, to patients attending a referral center for treatment of hemoglobinopathies in the State of Maranhão. 113 patients with SCD were interviewed and sociodemographic data, disease characteristics and laboratory tests (hemogram, foetal haemoglobin, DHL and reticulocytes) were collected. The SF-36 questionnaire was then applied. RESULTS: Most of the 113 patients were female, with a mean age of 26 years, declaring themselves to be of brown colour and living in the interior of the State. Most were unemployed, having low income and low schooling. About 92% were of the SS subtype, the most serious subtype. The percentage of neonatal diagnosis was only 27.4%. Regarding the SF-36 questionnaires, quality of life was classified as poor in relation to the physical component and good in the mental component. The use of hydroxyurea, the only medication approved in Brazil for the control and prevention of pain, promoted an improvement in the physical appearance of patients with SCD, howbeit, with no relation to the prevalence of clinical complications. CONCLUSIONS: The use of the SF-36 generic questionnaire showed impairment in the quality of life in the physical domains of patients with SCD, worsening in cases in which there was delayed diagnosis; in those individuals who claimed to have suffered prejudice; and in patients hospitalised for pain attacks. No deterioration of the mental components was observed. This scenario implies a need for government action sensitive to this public health problem.
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- 2019
6. Acute kidney injury according to RIFLE criteria in an ICU: incidence and mortality impact
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Santana, AR, Amorim, FF, Soares, FB, de Souza Godoy, LG, de Jesus Almeida, L, Rodrigues, TA, Menezes de Andrade Filho, G, Silva, TA, de Souza, JL, Ogliari, KCM, Ferreira, Jr, PN, Amorim, APP, de Moura, EB, de Araújo Neto, JA, and de Oliveira Maia, M
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- 2013
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7. Role of hypothermia in the immediate postoperative period on mortality in a surgical ICU
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Santana, AR, Amorim, FF, Soares, FB, de Souza Godoy, LG, de Jesus Almeida, L, Rodrigues, TA, de Andrade Filho, GM, Silva, TA, de Carvalho Santos, LC, de Araújo, MPB, Ferreira, Jr, PN, Amorim, APP, de Moura, EB, de Araújo Neto, JA, and de Oliveira Maia, M
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- 2013
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8. Comparison of CURB-65 and CRB-65 as predictors of death in community-acquired pneumonia in adults admitted to an ICU
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Santana, AR, Amorim, FF, Soares, FB, de Souza Godoy, LG, de Jesus Almeida, L, Rodrigues, TA, de Andrade Filho, GM, Silva, TA, da Silva Neto, OG, Rocha, PHG, Ferreira, Jr, PN, Amorim, APP, Bastos de Moura, E, de Araújo Neto, JA, and de Oliveira Maia, M
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- 2013
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9. Lactate clearance as a determinant of mortality in surgical patients
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Amorim, FF, Moura, EB, Santana, AR, Soares, FB, Godoy, LG, Rodrigues, TA, Almeida, LJ, FIlho, GM, Silva, TA, Amorim, AP, Neto, JA, and Maia, MO
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- 2013
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10. Impact of the time elapsed between ICU request and actual admission on mortality and length of stay
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Filho, GM, Silva, TA, Santana, AR, Soares, FB, Almeida, LJ, Godoy, LG, Rodrigues, TA, Maia, MO, Neto, JA, Amorim, AP, Moura, EB, and Amorim, FF
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- 2013
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11. A case report of an Erdheim-Chester patient focused on pain management
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Neto, JOB, primary, Garcia, JBS, additional, Rodrigues, TA, additional, and de Andrade Rodrigues, CF, additional
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- 2019
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12. Determining the topology of peroxisomal proteins using protease protection assays
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Francisco, T, Dias, AF, Pedrosa, AG, Grou, CP, Rodrigues, TA, Azevedo, JE, and Instituto de Investigação e Inovação em Saúde
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Endopeptidases/metabolism ,Peroxisomes/metabolism ,Proteolysis ,Proteins/metabolism ,Endopeptidase K/metabolism - Abstract
Protease protection assays are powerful tools to determine the topology of organelle proteins. Their simplicity, together with the fact that they are particularly suited to characterize endogenous proteins, are their major advantages and the reason why these assays have been in use for so many years. Here, we provide a detailed protocol to use with mammalian peroxisomes. Suggestions on how these assays can be controlled, and how to identify some technical pitfalls, are also presented. This work was financed by FEDER–Fundo Europeu de Desenvolvimento Regional, funds through the COMPETE 2020–Operacional Programme for Competitiveness and Internationalization (POCI), Portugal 2020, and by Portuguese funds through FCT–Fundação para a Ciência e a Tecnologia/Ministério da Ciência, Tecnologia e Inovação in the framework of the projects “Institute for Research and Innovation in Health Sciences” (POCI-01-0145-FEDER-007274) and “The molecular mechanisms of peroxisome biogenesis” (PTDC/BEX-BCM/2311/2014), and through Norte 2020—Programa Operacional Regional do Norte, under the application of the “Porto Neurosciences and Neurologic Disease Research Initiative at i3S (NORTE-01-0145-FEDER-000008)”. T.F, A.F.D., C.P.G., and T.A.R. were supported by Fundação para a Ciência e a Tecnologia, Programa Operacional Potencial Humano do QREN and Fundo Social Europeu.
- Published
- 2017
13. Factors involved in ubiquitination and deubiquitination of PEX5, the peroxisomal shuttling receptor
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Rodrigues, TA, Francisco, T, Carvalho, A, Pinto, MP, Grou, CP, Azevedo, JE, and Instituto de Investigação e Inovação em Saúde
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Polyubiquitination ,Monoubiquitination ,Protein trafficking ,Deubiquitination ,PEX5 ,Transient ubiquitination - Abstract
Peroxisomal matrix proteins are synthesized on cytosolic ribosomes and post-translationally targeted to the organelle by the soluble factor PEX5. Besides a role as a receptor, and probably as a chaperone, PEX5 also holds the key to the matrix of the organelle. Indeed, the available data suggest that PEX5 itself pushes these proteins across the peroxisomal membrane using as driving force the strong protein-protein interactions that it establishes with components of the peroxisomal membrane docking/translocation module (DTM). In recent years, much has been learned on how this transport system is reset and kept fine-tuned. Notably, this involves covalent modification of PEX5 with ubiquitin. Two types of PEX5 ubiquitination have been characterized: monoubiquitination at a conserved cysteine, a mandatory event for the extraction of PEX5 from the DTM; and polyubiquitination, probably the result of a quality control mechanism aiming at clearing the DTM from entangled PEX5 molecules. Monoubiquitination of PEX5 is transient in nature and the factors that reverse this modification have recently been identified. This work was funded by FEDER funds through the Operational Competitiveness Programme — COMPETE and by National Funds through FCT — Fundação para a Ciência e a Tecnologia under the project FCOMP-01-0124-FEDER-019731 (PTDC/BIA-BCM/118577/2010). T. A. R., T. F., M. P. P. and C. P. G. are supported by Fundação para a Ciência e a Tecnologia, Programa Operacional Potencial Humano do QREN, and Fundo Social Europeu. A. F. C. is supported by Programa Ciência, funded by Programa Operacional Potencial Humano do QREN, Tipologia 4.2, Promoção do Emprego Científico, by Fundo Social Europeu and by national funds from Ministério da Ciência, Tecnologia e Ensino Superior.
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- 2014
14. Biomechanical risk of nursing technicians in a [sic] Intensive Care Unit.
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Filho JBR, Carneiro NS, da Rocha GM, Lopes LCB, Andrade MS, de Rodrigues TA, and Lacerda EZC
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- 2010
15. COMPARISON OF DETERMINANTS OF INTRAUTERINE GROWTH-RETARDATION AND PRETERM BIRTH
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Rodrigues, Ta, Teles, Tp, and Henrique Barros
16. Noncanonical and reversible cysteine ubiquitination prevents the overubiquitination of PEX5 at the peroxisomal membrane.
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Francisco T, Pedrosa AG, Rodrigues TA, Abalkhail T, Li H, Ferreira MJ, van der Heden van Noort GJ, Fransen M, Hettema EH, and Azevedo JE
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- Animals, Rats, Carrier Proteins metabolism, Peroxisome-Targeting Signal 1 Receptor chemistry, Peroxisome-Targeting Signal 1 Receptor metabolism, Protein Transport, Ubiquitination, Cysteine metabolism, Lysine metabolism
- Abstract
PEX5, the peroxisomal protein shuttling receptor, binds newly synthesized proteins in the cytosol and transports them to the organelle. During its stay at the peroxisomal protein translocon, PEX5 is monoubiquitinated at its cysteine 11 residue, a mandatory modification for its subsequent ATP-dependent extraction back into the cytosol. The reason why a cysteine and not a lysine residue is the ubiquitin acceptor is unknown. Using an established rat liver-based cell-free in vitro system, we found that, in contrast to wild-type PEX5, a PEX5 protein possessing a lysine at position 11 is polyubiquitinated at the peroxisomal membrane, a modification that negatively interferes with the extraction process. Wild-type PEX5 cannot retain a polyubiquitin chain because ubiquitination at cysteine 11 is a reversible reaction, with the E2-mediated deubiquitination step presenting faster kinetics than PEX5 polyubiquitination. We propose that the reversible nonconventional ubiquitination of PEX5 ensures that neither the peroxisomal protein translocon becomes obstructed with polyubiquitinated PEX5 nor is PEX5 targeted for proteasomal degradation., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Francisco et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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17. Glutathione and peroxisome redox homeostasis.
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Ferreira MJ, Rodrigues TA, Pedrosa AG, Silva AR, Vilarinho BG, Francisco T, and Azevedo JE
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- Antioxidants metabolism, Oxidation-Reduction, Homeostasis, Peroxisomes metabolism, Glutathione metabolism
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Despite intensive research on peroxisome biochemistry, the role of glutathione in peroxisomal redox homeostasis has remained a matter of speculation for many years, and only recently has this issue started to be experimentally addressed. Here, we summarize and compare data from several organisms on the peroxisome-glutathione topic. It is clear from this comparison that the repertoire of glutathione-utilizing enzymes in peroxisomes of different organisms varies widely. In addition, the available data suggest that the kinetic connectivity between the cytosolic and peroxisomal pools of glutathione may also be different in different organisms, with some possessing a peroxisomal membrane that is promptly permeable to glutathione whereas in others this may not be the case. However, regardless of the differences, the picture that emerges from all these data is that glutathione is a crucial component of the antioxidative system that operates inside peroxisomes in all organisms., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2023
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18. The mammalian peroxisomal membrane is permeable to both GSH and GSSG - Implications for intraperoxisomal redox homeostasis.
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Ferreira MJ, Rodrigues TA, Pedrosa AG, Gales L, Salvador A, Francisco T, and Azevedo JE
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- Rats, Animals, Glutathione Disulfide metabolism, Cysteine metabolism, Hydrogen Peroxide metabolism, Glutathione metabolism, Oxidation-Reduction, Proteins metabolism, Mammals metabolism, Homeostasis, Peroxisomes metabolism, Protein Disulfide Reductase (Glutathione) analysis, Protein Disulfide Reductase (Glutathione) metabolism
- Abstract
Despite the large amounts of H
2 O2 generated in mammalian peroxisomes, cysteine residues of intraperoxisomal proteins are maintained in a reduced state. The biochemistry behind this phenomenon remains unexplored, and simple questions such as "is the peroxisomal membrane permeable to glutathione?" or "is there a thiol-disulfide oxidoreductase in the organelle matrix?" still have no answer. We used a cell-free in vitro system to equip rat liver peroxisomes with a glutathione redox sensor. The organelles were then incubated with glutathione solutions of different redox potentials and the oxidation/reduction kinetics of the redox sensor was monitored. The data suggest that the mammalian peroxisomal membrane is promptly permeable to both reduced and oxidized glutathione. No evidence for the presence of a robust thiol-disulfide oxidoreductase in the peroxisomal matrix could be found. Also, prolonged incubation of organelle suspensions with glutaredoxin 1 did not result in the internalization of the enzyme. To explore a potential role of glutathione in intraperoxisomal redox homeostasis we performed kinetic simulations. The results suggest that even in the absence of a glutaredoxin, glutathione is more important in protecting cysteine residues of matrix proteins from oxidation by H2 O2 than peroxisomal catalase itself., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2023
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19. Prejudice impairing quality of life in sickle cell disease patients in a developing country: faces of suffering.
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Rodrigues CFA, Rodrigues TA, de Oliveira EJSG, Garcia JBS, and Cartágenes MDSS
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Introduction: The perception of prejudice against, and stigmatization of, sickle cell disease (SCD) leads the patient to perceive a different treatment, due to the disease stigma and may be related to a worse quality of life (QoL)., Objectives: Describe and evaluate the perception of the prejudice against the disease and its impact on the quality of life of patients with sickle cell disease., Methods: This is a cross-sectional study conducted between March 2019 and February 2020, with patients diagnosed with SCD. Patients were questioned about the perception of prejudice in any kind of situation, choosing between "Yes" or "No", not differentiating situations related to prejudice. To assess the QoL and impact of the disease, the volunteers answered a version of the SF-36 questionnaire translated and validated into Brazilian Portuguese., Results: In this study, 113 patients with SCD were followed up, 92% were classified as HbSS and the rest, divided between HbSC and HbS-β-0. Regarding the SF-36, the worst scores were in the summary of the physical components (mean 48.19 ± 21.51) and the physical aspect had the lowest mean (30.75 ±€42.65). When questioned if they had already perceived any kind of prejudice, including the SCD, 32.74% answered "Yes". For this comparison, there was a significant difference in the summary of the physical and mental components, with worse QoL for those who had already suffered prejudice., Conclusion: Patients diagnosed with SCD who reported perception of prejudice had statistically significant worse QoL, revealing the negative impact, that might lead to sadness and social isolation., Competing Interests: Conflicts of interest The authors declare no conflicts of interest., (Copyright © 2021 Associação Brasileira de Hematologia, Hemoterapia e Terapia Celular. Published by Elsevier España, S.L.U. All rights reserved.)
- Published
- 2023
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20. Peroxisomes : novel findings and future directions.
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Pedrosa AG, Reglinski K, Lismont C, Kors S, Costello J, Rodrigues TA, Marques M, Linka N, Argyriou C, Weinhofer I, Kocherlakota S, Riccio V, Ferreira V, Di Cara F, Ferreira AR, Francisco T, Azevedo JE, and Ribeiro D
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- 2023
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21. Factors associated with the safety culture of patients under dialysis in the context of the COVID-19 pandemic.
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Rodrigues TA, Amaral FMA, Hoffmann MA, Azevedo C, Ribeiro HCTC, and Mata LRFD
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- Humans, Cross-Sectional Studies, Renal Dialysis, Safety Management, Surveys and Questionnaires, Patient Safety, Organizational Culture, Pandemics, COVID-19 epidemiology
- Abstract
Objectives: to assess the factors associated with the safety culture of patients under dialysis in the context of the COVID-19 pandemic., Methods: a cross-sectional and analytical study, carried out in Minas Gerais, with 134 professionals from three dialysis services. The Hospital Survey on Patient Safety Culture, adapted for Brazil, was used., Results: only variable type of management was associated with the highest percentage of positive response in public and private services. Patient safety was rated as good by 55.7% of respondents. In dimension assessment, the public service presented one strength and five weaknesses, the private service did not present weak areas, and the philanthropic service presented a weakness. The priority areas for improvement actions are represented by dimensions "Nonpunitive response to error" and "Staffing"., Conclusions: interventions should consider the type of service management, as it is a factor associated with safety culture.
- Published
- 2023
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22. The Extraction Mechanism of Monoubiquitinated PEX5 from the Peroxisomal Membrane.
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Pedrosa AG, Francisco T, Rodrigues TA, Ferreira MJ, van der Heden van Noort GJ, and Azevedo JE
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- ATPases Associated with Diverse Cellular Activities metabolism, Protein Transport, Ubiquitination, Humans, Cell-Free System, Membrane Proteins metabolism, Peroxisome-Targeting Signal 1 Receptor metabolism, Peroxisomes metabolism, Ubiquitin metabolism
- Abstract
The AAA ATPases PEX1•PEX6 extract PEX5, the peroxisomal protein shuttling receptor, from the peroxisomal membrane so that a new protein transport cycle can start. Extraction requires ubiquitination of PEX5 at residue 11 and involves a threading mechanism, but how exactly this occurs is unclear. We used a cell-free in vitro system and a variety of engineered PEX5 and ubiquitin molecules to challenge the extraction machinery. We show that PEX5 modified with a single ubiquitin is a substrate for extraction and extend previous findings proposing that neither the N- nor the C-terminus of PEX5 are required for extraction. Chimeric PEX5 molecules possessing a branched polypeptide structure at their C-terminal domains can still be extracted from the peroxisomal membrane thus suggesting that the extraction machinery can thread more than one polypeptide chain simultaneously. Importantly, we found that the PEX5-linked monoubiquitin is unfolded at a pre-extraction stage and, accordingly, an intra-molecularly cross-linked ubiquitin blocked extraction when conjugated to residue 11 of PEX5. Collectively, our data suggest that the PEX5-linked monoubiquitin is the extraction initiator and that the complete ubiquitin-PEX5 conjugate is threaded by PEX1•PEX6., (Copyright © 2022 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
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23. A Cell-Free In Vitro Import System for Peroxisomal Proteins Containing a Type 2 Targeting Signal (PTS2).
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Ferreira MJ, Rodrigues TA, Pedrosa AG, Francisco T, and Azevedo JE
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- Rats, Mice, Animals, Receptors, Cytoplasmic and Nuclear genetics, Receptors, Cytoplasmic and Nuclear metabolism, Protein Transport, Peroxisomes metabolism, Mammals metabolism, Peroxisomal Targeting Signals, Peroxisomal Disorders metabolism
- Abstract
Cell-free in vitro systems are invaluable tools to study the molecular mechanisms of protein translocation across biological membranes. We have been using such a strategy to dissect the mechanism of the mammalian peroxisomal matrix protein import machinery. Here, we provide a detailed protocol to import proteins containing a peroxisomal targeting signal type 2 (PTS2) into the organelle. The in vitro system consists of incubating a
35 S-labeled reporter protein with a post-nuclear supernatant from rat/mouse liver. At the end of the incubation, the organelle suspensions are generally treated with an aggressive protease to degrade reporter proteins that did not enter peroxisomes, and the organelles are isolated by centrifugation and analyzed by SDS-PAGE and autoradiography. This in vitro system is particularly suited to characterize the functional consequences of PEX5 and PEX7 mutations found in patients affected with a peroxisomal biogenesis disorder., (© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)- Published
- 2023
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24. In Vitro Diagnostic Assay to Detect SARS-CoV-2-Neutralizing Antibody in Patient Sera Using Engineered ACE-2 Mini-Protein.
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Pereira de Jesus BA, Gomes AA, Clark AE, Rodrigues TA, Ledgerwood-Lee M, Van Zant W, Brickner H, Wang M, Blum DL, Cassera MB, Carlin AF, Aronoff-Spencer ES, da Silva GF, Magalhães MLB, and Ray P
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- Humans, Angiotensin-Converting Enzyme 2, Antibodies, Viral, Antibodies, Neutralizing, Spike Glycoprotein, Coronavirus, SARS-CoV-2, COVID-19 diagnosis
- Abstract
The recent development and mass administration of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) vaccines allowed for disease control, reducing hospitalizations and mortality. Most of these vaccines target the SARS-CoV-2 Spike (S) protein antigens, culminating with the production of neutralizing antibodies (NAbs) that disrupt the attachment of the virus to ACE2 receptors on the host cells. However, several studies demonstrated that the NAbs typically rise within a few weeks after vaccination but quickly reduce months later. Thus, multiple booster administration is recommended, leading to vaccination hesitancy in many populations. Detecting serum anti-SARS-CoV-2 NAbs can instruct patients and healthcare providers on correct booster strategies. Several in vitro diagnostics kits are available; however, their high cost impairs the mass NAbs diagnostic testing. Recently, we engineered an ACE2 mimetic that interacts with the Receptor Binding Domain (RBD) of the SARS-2 S protein. Here we present the use of this engineered mini-protein (p-deface2 mut) to develop a detection assay to measure NAbs in patient sera using a competitive ELISA assay. Serum samples from twenty-one patients were tested. Nine samples (42.8%) tested positive, and twelve (57.1%) tested negative for neutralizing sera. The data correlated with the result from the standard commercial assay that uses human ACE2 protein. This confirmed that p-deface2 mut could replace human ACE2 in ELISA assays. Using bacterially expressed p-deface2 mut protein is cost-effective and may allow mass SARS-CoV-2 NAbs detection, especially in low-income countries where economical diagnostic testing is crucial. Such information will help providers decide when a booster is required, reducing risks of reinfection and preventing the administration before it is medically necessary.
- Published
- 2022
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25. First generation of multifunctional peptides derived from latarcin-3a from Lachesana tarabaevi spider toxin.
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de Moraes LFRN, Silva PSE, Pereira TCPL, Almeida Rodrigues TA, Farias Frihling BE, da Costa RA, Torquato HFV, Lima CS, Paredes-Gamero EJ, and Migliolo L
- Abstract
The need for discovering new compounds that can act selectively on pathogens is becoming increasingly evident, given the number of deaths worldwide due to bacterial infections or tumor cells. New multifunctional biotechnological tools are being sought, including compounds present in spider venoms, which have high biotechnological potential. The present work aims to perform the rational design and functional evaluation of synthetic peptides derived from Lachesana tarabaevi spider toxin, known as latarcin-3a. The antimicrobial activity was tested against Gram-positive and -negative bacteria, with minimum inhibitory concentrations (MIC) between 4 and 128 μg.ml
-1 . Anti-biofilm tests were then performed to obtain MICs, where the peptides demonstrated activity from 4 to 128 μg.ml-1 . In vitro cell cytotoxicity assays were carried out from tumor cell lines, lineages C1498, Kasumi-1, K-562, Jurkat, MOLT4, and Raji. Erythrocyte integrity was evaluated in the presence of synthetic peptides analog, which did not promote hemolysis at 128 μg.ml-1 . The peptide that showed the best antibacterial activity was Lt-MAP3 and the best antitumor was Lt-MAP2. In conclusion, rational design of multifunctional antimicrobial peptides may be promising alternative tools in the treatment of emerging diseases such as bacterial infections and tumor cells., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 de Moraes, Silva, Pereira, Almeida Rodrigues, Farias Frihling, da Costa, Torquato, Lima, Paredes-Gamero and Migliolo.)- Published
- 2022
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26. Cellular responses and microRNA profiling in bovine spermatozoa under heat shock.
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da Silva DF, Rodrigues TA, da Silveira JC, Gonella-Diaza AM, Binelli M, Lopes JV, Moura MT, Feitosa WB, and Paula-Lopes FF
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- Animals, Caspases, Cattle, Heat-Shock Response, Male, Reactive Oxygen Species, Semen, Sperm Motility, Spermatozoa physiology, MicroRNAs genetics, Semen Preservation
- Abstract
In Brief: Elevated temperatures disturbed sperm physiology. Bovine sperm cells exposed to heat shock led to diminished mitochondrial activity, fertilizing ability, increased oxidative stress and caspase activity concomitant with a delay in embryonic developmental kinetics and modulation of sperm-borne microRNAsmiRNAs., Abstract: Sperm function is susceptible to adverse environmental conditions. It has been demonstrated that in vivo and in vitro exposure of bovine sperm to elevated temperature reduces sperm motility and fertilizing potential. However, the cascade of functional, cellular, and molecular events triggered by elevated temperature in the mature sperm cell remains not fully understood. Therefore, the aim of this study was to determine the effect of heat shock on mature sperm cells. Frozen-thawed Holstein sperm were evaluated immediately after Percoll purification (0 h non-incubation control) or after incubation at 35, 38.5, and 41°C for 4 h. Heat shock reduced sperm motility after 3-4 h at 41°C while mitochondrial activity was reduced by 38.5 and 41°C when compared to the control. Heat shock also increased sperm reactive oxygen species production and caspase activity. Heat-shocked sperm had lower fertilizing ability, which led to diminished cleavage and blastocyst rates. Preimplantation embryo developmental kinetics was also slowed and reduced by sperm heat shock. The microRNA (miR) profiling identified >300 miRs in bovine sperm. Among these, three and seven miRs were exclusively identified in sperm cells exposed to 35 and 41°C, respectively. Moreover, miR-181d was enriched in sperm cells exposed to higher temperatures. Hence, elevated temperature altered the physiology of mature sperm cells by perturbing cellular processes and the miR profile, which collectively led to lower fertilizing ability and preimplantation development.
- Published
- 2022
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27. Drone flight data reveal energy and greenhouse gas emissions savings for very small package delivery.
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Rodrigues TA, Patrikar J, Oliveira NL, Matthews HS, Scherer S, and Samaras C
- Abstract
Uncrewed aerial vehicles (UAVs) for last-mile deliveries will affect the energy productivity of delivery and require new methods to understand energy consumption and greenhouse gas (GHG) emissions. We combine empirical testing of 188 quadcopter flights across a range of speeds with a first-principles analysis to develop a usable energy model and a machine-learning algorithm to assess energy across takeoff, cruise, and landing. Our model shows that an electric quadcopter drone with a very small package (0.5 kg) would consume approximately 0.08 MJ/km and result in 70 g of CO
2 e per package in the United States. We compare drone delivery with other vehicles and show that energy per package delivered by drones (0.33 MJ/package) can be up to 94% lower than conventional transportation modes, with only electric cargo bicycles providing lower GHGs/package. Our open model and coefficients can assist stakeholders in understanding and improving the sustainability of small package delivery., Competing Interests: The authors declare no competing interests. C.S. has a patent for a system, method, and computer program product for transporting an unmanned vehicle, US patent 11300978B1, 2022. The patent’s methods were not used this study., (© 2022 The Author(s).)- Published
- 2022
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28. Experiences of family members of children diagnosed with autism spectrum disorder.
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Magalhães JM, Rodrigues TA, Neta MMR, Damasceno CKCS, Sousa KHJF, and Arisawa EÂLS
- Subjects
- Caregivers, Emotions, Female, Humans, Mothers, Autism Spectrum Disorder, Autistic Disorder
- Abstract
Objective: To describe, in the mothers' perception, the experiences lived by families in the care of children with autism spectrum disorder., Method: Qualitative study, carried out with 20 mothers of children diagnosed with autistic disorder accompanied by an institution in Teresina-Piauí, Brazil. Semi-structured interviews were conducted between February and March 2019 and subjected to content analysis., Results: Five central ideas related to the stages experienced by family members after the diagnosis were identified, ranging from denial to acceptance. Family members and caregivers experience feelings of sadness and mourning for the discovery of the impossibility of curing the syndrome, revealing the need for care for this family. The search for help and adaptations of the routine are constant experiences., Conclusion: Caring for children who live with autistic disorder involves learning ranging from structural to emotional aspects, such as dealing with limitations and impossibility of cure, pointing out to the need for family care.
- Published
- 2021
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29. Case report: hepatitis in a child infected with SARS-CoV-2 presenting toll-like receptor 7 Gln11Leu single nucleotide polymorphism.
- Author
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Pessoa NL, Bentes AA, de Carvalho AL, de Souza Silva TB, Alves PA, de Sousa Reis EV, Rodrigues TA, Kroon EG, and Campos MA
- Subjects
- Antibodies, Viral blood, COVID-19 immunology, Child, Preschool, Epstein-Barr Virus Infections genetics, Epstein-Barr Virus Infections virology, Feces virology, Hepatitis, Viral, Human immunology, Herpesvirus 4, Human isolation & purification, Humans, Immunity, Innate, Influenza, Human, Male, Polymorphism, Single Nucleotide, SARS-CoV-2 isolation & purification, COVID-19 genetics, COVID-19 virology, Hepatitis, Viral, Human genetics, Hepatitis, Viral, Human virology, Toll-Like Receptor 7 genetics
- Abstract
Background: Covid-19 has the respiratory tract as the main target of infection, and patients present mainly dyspnea, pneumonia, dry cough, and fever. Nevertheless, organs outside the respiratory tract had been reported in recent studies, including the gastrointestinal tract and liver. The host innate immune system recognizes pathogen-associated molecular patterns (PAMPs) through their pattern recognition receptor (PRRs). Toll-like receptor 7 (TLR-7) is a pattern recognition receptor recognizing ssRNA (SARS-CoV-2 is an ssRNA). Polymorphisms are characterized by two or more alternative forms of a distinct phenotype in the same population. Polymorphisms in tlrs genes can negatively influence the immune response to infectious diseases. There are several references in the literature to non-synonymous single nucleotide (rs) polymorphisms related to several genes. Some of them are important for the innate immunity, as rs 179008 (tlr-7), rs3775291 (tlr3), rs8177374 (tir domain-containing adaptor protein, tirap), rs1024611 (monocyte chemoattractant protein-1, mcp-1) and rs61942233 (2'-5'-oligoadenylate synthase-3, oas-3)., Case Presentation: We identified a 5-year-old-male child with gastrointestinal symptoms and fever presenting acholic stool and jaundice, who was positive for SARS-CoV-2 IgM, IgA, and IgG and presenting the Gln11Leu rs 179008 in tlr-7. The child presented high levels of aspartate aminotransferase, alanine aminotransferase, bilirubin, C-reactive protein, D-dimer, gamma-glutamyl transferase, alkaline phosphatase, and was negative for serological tests for hepatitis A, B, C, E, HIV 1 and 2, herpes virus, cytomegalovirus, Epstein-Barr virus, and negative for RTqPCR for Influenza A and B, RSV and SARS-CoV-2. We also investigated other SNPs in the tlr-3 (rs3775291), tirap (rs8177374), mcp-1 (rs1024611), and oas-3 (rs61942233) genes, and no mutation was detected. After an interview with the child's caregivers, any possible accidental ingestion of drugs or hepatotoxic substances was ruled out., Conclusion: To our knowledge, this is the first report of a SARS-CoV-2 caused hepatitis in a male child that has the tlr-7 Gln11Leu rs 179008, which could impair an efficient initial immune response. The knowledge of the patient's immune deficiency could improve the treatment to correct this deficiency with specific medications., (© 2021. The Author(s).)
- Published
- 2021
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30. Benchmarking of Nondestructive Testing for Additive Manufacturing.
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Duarte VR, Rodrigues TA, Machado MA, Pragana JPM, Pombinha P, Coutinho L, Silva CMA, Miranda RM, Goodwin C, Huber DE, Oliveira JP, and Santos TG
- Abstract
Defect detection in additive manufacturing (AM) is of paramount importance to improve the reliability of products. Nondestructive testing is not yet widely used for defect detection. The main challenges are a lack of standards and methods, the types and location of defects, and the complex geometry of many parts. During selective laser melting (SLM), several types of defects can occur such as porosity, cracking, and lack of fusion. In this study, several nondestructive tests were conducted in a highly complex shaped part in AISI 316L stainless steel with real defects manufactured by SLM. Two additional artificial defects (one horizontal and one flat bottom hole) were produced and the defect detectability was evaluated. The techniques used were as follows: dye penetrant, infrared thermography, immersion ultrasonic, eddy current, and X-ray microcomputed tomography to assess different types of defects in the as-built part. We conclude that no single technique can detect every type of defect, although multiple techniques provide complementary and redundant information to critically evaluate the integrity of the parts. This approach is fundamental for improving the reliability of defect detection, which will help expand the potential for using AM to produce parts for critical structural applications., Competing Interests: No competing financial interests exist., (Copyright 2021, Mary Ann Liebert, Inc., publishers.)
- Published
- 2021
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31. In-flight positional and energy use data set of a DJI Matrice 100 quadcopter for small package delivery.
- Author
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Rodrigues TA, Patrikar J, Choudhry A, Feldgoise J, Arcot V, Gahlaut A, Lau S, Moon B, Wagner B, Matthews HS, Scherer S, and Samaras C
- Abstract
We autonomously directed a small quadcopter package delivery Uncrewed Aerial Vehicle (UAV) or "drone" to take off, fly a specified route, and land for a total of 209 flights while varying a set of operational parameters. The vehicle was equipped with onboard sensors, including GPS, IMU, voltage and current sensors, and an ultrasonic anemometer, to collect high-resolution data on the inertial states, wind speed, and power consumption. Operational parameters, such as commanded ground speed, payload, and cruise altitude, were varied for each flight. This large data set has a total flight time of 10 hours and 45 minutes and was collected from April to October of 2019 covering a total distance of approximately 65 kilometers. The data collected were validated by comparing flights with similar operational parameters. We believe these data will be of great interest to the research and industrial communities, who can use the data to improve UAV designs, safety, and energy efficiency, as well as advance the physical understanding of in-flight operations for package delivery drones.
- Published
- 2021
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32. A missense allele of PEX5 is responsible for the defective import of PTS2 cargo proteins into peroxisomes.
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Ali M, Khan SY, Rodrigues TA, Francisco T, Jiao X, Qi H, Kabir F, Irum B, Rauf B, Khan AA, Mehmood A, Naeem MA, Assir MZ, Ali MH, Shahzad M, Abu-Amero KK, Akram SJ, Akram J, Riazuddin S, Riazuddin S, Robinson ML, Baes M, Azevedo JE, Hejtmancik JF, and Riazuddin SA
- Subjects
- ATP-Binding Cassette Transporters metabolism, Animals, Biological Transport, Active, Cataract congenital, Cataract metabolism, Chromosomes, Human, Pair 12, Consanguinity, Female, Genetic Linkage, Humans, Lens, Crystalline metabolism, Male, Mice, Mice, Knockout, Peroxisome-Targeting Signal 1 Receptor metabolism, Sequestosome-1 Protein metabolism, Exome Sequencing, Cataract genetics, Mutation, Missense, Peroxisomal Targeting Signals, Peroxisome-Targeting Signal 1 Receptor genetics, Peroxisomes metabolism
- Abstract
Peroxisomes, single-membrane intracellular organelles, play an important role in various metabolic pathways. The translocation of proteins from the cytosol to peroxisomes depends on peroxisome import receptor proteins and defects in peroxisome transport result in a wide spectrum of peroxisomal disorders. Here, we report a large consanguineous family with autosomal recessive congenital cataracts and developmental defects. Genome-wide linkage analysis localized the critical interval to chromosome 12p with a maximum two-point LOD score of 4.2 (θ = 0). Next-generation exome sequencing identified a novel homozygous missense variant (c.653 T > C; p.F218S) in peroxisomal biogenesis factor 5 (PEX5), a peroxisome import receptor protein. This missense mutation was confirmed by bidirectional Sanger sequencing. It segregated with the disease phenotype in the family and was absent in ethnically matched control chromosomes. The lens-specific knockout mice of Pex5 recapitulated the cataractous phenotype. In vitro import assays revealed a normal capacity of the mutant PEX5 to enter the peroxisomal Docking/Translocation Module (DTM) in the presence of peroxisome targeting signal 1 (PTS1) cargo protein, be monoubiquitinated and exported back into the cytosol. Importantly, the mutant PEX5 protein was unable to form a stable trimeric complex with peroxisomal biogenesis factor 7 (PEX7) and a peroxisome targeting signal 2 (PTS2) cargo protein and, therefore, failed to promote the import of PTS2 cargo proteins into peroxisomes. In conclusion, we report a novel missense mutation in PEX5 responsible for the defective import of PTS2 cargo proteins into peroxisomes resulting in congenital cataracts and developmental defects.
- Published
- 2021
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33. Species identity and diversity effects on invasion resistance of tropical freshwater plant communities.
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Petruzzella A, da S S R Rodrigues TA, van Leeuwen CHA, de Assis Esteves F, Figueiredo-Barros MP, and Bakker ES
- Subjects
- Biochemical Phenomena genetics, Biodiversity, Biomass, Ecosystem, Fresh Water, Hydrocharitaceae genetics, Introduced Species, Phylogeny, Population Dynamics, Hydrocharitaceae physiology
- Abstract
Biotic resistance mediated by native plant diversity has long been hypothesized to reduce the success of invading plant species in terrestrial systems in temperate regions. However, still little is known about the mechanisms driving invasion patterns in other biomes or latitudes. We help to fill this gap by investigating how native plant community presence and diversity, and the presence of native phylogenetically closely related species to an invader, would affect invader Hydrilla verticillata establishment success in tropical freshwater submerged plant communities. The presence of a native community suppressed the growth of H. verticillata, but did not prevent its colonisation. Invader growth was negatively affected by native plant productivity, but independent of native species richness and phylogenetic relatedness to the invader. Native plant production was not related to native species richness in our study. We show that resistance in these tropical aquatic submerged plant communities is mainly driven by the presence and biomass of a native community independent of native species diversity. Our study illustrates that resistance provided by these tropical freshwater submerged plant communities to invasive species contrasts to resistance described for other ecosystems. This emphasizes the need to include understudied systems when predicting patterns of species invasiveness and ecosystem invasibility across biomes.
- Published
- 2020
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34. CLASP2 binding to curved microtubule tips promotes flux and stabilizes kinetochore attachments.
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Girão H, Okada N, Rodrigues TA, Silva AO, Figueiredo AC, Garcia Z, Moutinho-Santos T, Hayashi I, Azevedo JE, Macedo-Ribeiro S, and Maiato H
- Subjects
- Chromosome Segregation genetics, HeLa Cells, Humans, Microtubules genetics, Mitosis genetics, Protein Binding genetics, Protein Domains, Spindle Apparatus genetics, Kinetochores metabolism, M Phase Cell Cycle Checkpoints genetics, Microtubule-Associated Proteins genetics
- Abstract
CLASPs are conserved microtubule plus-end-tracking proteins that suppress microtubule catastrophes and independently localize to kinetochores during mitosis. Thus, CLASPs are ideally positioned to regulate kinetochore-microtubule dynamics required for chromosome segregation fidelity, but the underlying mechanism remains unknown. Here, we found that human CLASP2 exists predominantly as a monomer in solution, but it can self-associate through its C-terminal kinetochore-binding domain. Kinetochore localization was independent of self-association, and driving monomeric CLASP2 to kinetochores fully rescued normal kinetochore-microtubule dynamics, while partially sustaining mitosis. CLASP2 kinetochore localization, recognition of growing microtubule plus-ends through EB-protein interaction, and the ability to associate with curved microtubule protofilaments through TOG2 and TOG3 domains independently sustained normal spindle length, timely spindle assembly checkpoint satisfaction, chromosome congression, and faithful segregation. Measurements of kinetochore-microtubule half-life and poleward flux revealed that CLASP2 regulates kinetochore-microtubule dynamics by integrating distinctive microtubule-binding properties at the kinetochore-microtubule interface. We propose that kinetochore CLASP2 suppresses microtubule depolymerization and detachment by binding to curved protofilaments at microtubule plus-ends., (© 2019 Girão et al.)
- Published
- 2020
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35. A Mechanistic Perspective on PEX1 and PEX6, Two AAA+ Proteins of the Peroxisomal Protein Import Machinery.
- Author
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Pedrosa AG, Francisco T, Ferreira MJ, Rodrigues TA, Barros-Barbosa A, and Azevedo JE
- Subjects
- ATPases Associated with Diverse Cellular Activities chemistry, Animals, Humans, Peroxisome-Targeting Signal 1 Receptor chemistry, Protein Transport, ATPases Associated with Diverse Cellular Activities metabolism, Peroxisome-Targeting Signal 1 Receptor metabolism, Peroxisomes metabolism
- Abstract
In contrast to many protein translocases that use ATP or GTP hydrolysis as the driving force to transport proteins across biological membranes, the peroxisomal matrix protein import machinery relies on a regulated self-assembly mechanism for this purpose and uses ATP hydrolysis only to reset its components. The ATP-dependent protein complex in charge of resetting this machinery-the Receptor Export Module (REM)-comprises two members of the "ATPases Associated with diverse cellular Activities" (AAA+) family, PEX1 and PEX6, and a membrane protein that anchors the ATPases to the organelle membrane. In recent years, a large amount of data on the structure/function of the REM complex has become available. Here, we discuss the main findings and their mechanistic implications.
- Published
- 2019
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36. Current Status and Perspectives on Wire and Arc Additive Manufacturing (WAAM).
- Author
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Rodrigues TA, Duarte V, Miranda RM, Santos TG, and Oliveira JP
- Abstract
Additive manufacturing has revolutionized the manufacturing paradigm in recent years due to the possibility of creating complex shaped three-dimensional parts which can be difficult or impossible to obtain by conventional manufacturing processes. Among the different additive manufacturing techniques, wire and arc additive manufacturing (WAAM) is suitable to produce large metallic parts owing to the high deposition rates achieved, which are significantly larger than powder-bed techniques, for example. The interest in WAAM is steadily increasing, and consequently, significant research efforts are underway. This review paper aims to provide an overview of the most significant achievements in WAAM, highlighting process developments and variants to control the microstructure, mechanical properties, and defect generation in the as-built parts; the most relevant engineering materials used; the main deposition strategies adopted to minimize residual stresses and the effect of post-processing heat treatments to improve the mechanical properties of the parts. An important aspect that still hinders this technology is certification and nondestructive testing of the parts, and this is discussed. Finally, a general perspective of future advancements is presented.
- Published
- 2019
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37. Follicular fluid exosomes act on the bovine oocyte to improve oocyte competence to support development and survival to heat shock.
- Author
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Rodrigues TA, Tuna KM, Alli AA, Tribulo P, Hansen PJ, Koh J, and Paula-Lopes FF
- Subjects
- Animals, Cattle, Embryonic Development physiology, Female, In Vitro Oocyte Maturation Techniques, Exosomes metabolism, Follicular Fluid metabolism, Heat-Shock Response physiology, Oocytes metabolism
- Abstract
Addition of follicular fluid to oocyte maturation medium can affect cumulus cell function, increase competence of the oocytes to be fertilised and develop to the blastocyst stage and protect the oocyte from heat shock. Here, it was tested whether exosomes in follicular fluid are responsible for the effects of follicular fluid on the function of the cumulus-oocyte complex (COC). This was accomplished by culturing COCs during oocyte maturation at 38.5°C (body temperature of the cow) or 41°C (heat shock) with follicular fluid or exosomes derived from follicular fluid and evaluating various aspects of function of the oocyte and the embryo derived from it. Negative effects of heat shock on cleavage and blastocyst development, but not cumulus expansion, were reduced by follicular fluid and exosomes. The results support the idea that exosomes in follicular fluid play important roles during oocyte maturation to enhance oocyte function and protect it from stress.
- Published
- 2019
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38. The intrinsically disordered nature of the peroxisomal protein translocation machinery.
- Author
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Barros-Barbosa A, Rodrigues TA, Ferreira MJ, Pedrosa AG, Teixeira NR, Francisco T, and Azevedo JE
- Subjects
- Humans, Protein Domains, Protein Transport, Signal Transduction, Intrinsically Disordered Proteins metabolism, Peroxisomes metabolism, Protein Interaction Domains and Motifs
- Abstract
Despite having a membrane that is impermeable to all but the smallest of metabolites, peroxisomes acquire their newly synthesized (cytosolic) matrix proteins in an already folded conformation. In some cases, even oligomeric proteins have been reported to translocate the organelle membrane. The protein sorting machinery that accomplishes this feat must be rather flexible and, unsurprisingly, several of its key components have large intrinsically disordered domains. Here, we provide an overview on these domains and their interactions trying to infer their functional roles in this protein sorting pathway., (© 2018 Federation of European Biochemical Societies.)
- Published
- 2019
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39. Membrane topologies of PEX13 and PEX14 provide new insights on the mechanism of protein import into peroxisomes.
- Author
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Barros-Barbosa A, Ferreira MJ, Rodrigues TA, Pedrosa AG, Grou CP, Pinto MP, Fransen M, Francisco T, and Azevedo JE
- Subjects
- Animals, Liposomes metabolism, Male, Membrane Proteins genetics, Protein Transport, Rats, Rats, Wistar, Recombinant Proteins genetics, Repressor Proteins genetics, Cell Membrane metabolism, Membrane Proteins metabolism, Peroxisomes metabolism, Recombinant Proteins metabolism, Repressor Proteins metabolism
- Abstract
PEX13 and PEX14 are two core components of the so-called peroxisomal docking/translocation module, the transmembrane hydrophilic channel through which newly synthesized peroxisomal proteins are translocated into the organelle matrix. The two proteins interact with each other and with PEX5, the peroxisomal matrix protein shuttling receptor, through relatively well characterized domains. However, the topologies of these membrane proteins are still poorly defined. Here, we subjected proteoliposomes containing PEX13 or PEX14 and purified rat liver peroxisomes to protease-protection assays and analyzed the protected protein fragments by mass spectrometry, Edman degradation and western blotting using antibodies directed to specific domains of the proteins. Our results indicate that PEX14 is a bona fide intrinsic membrane protein with a N
in -Cout topology, and that PEX13 adopts a Nout -Cin topology, thus exposing its carboxy-terminal Src homology 3 [SH3] domain into the organelle matrix. These results reconcile several enigmatic findings previously reported on PEX13 and PEX14 and provide new insights into the organization of the peroxisomal protein import machinery. ENZYMES: Trypsin, EC3.4.21.4; Proteinase K, EC3.4.21.64; Tobacco etch virus protease, EC3.4.22.44., (© 2018 Federation of European Biochemical Societies.)- Published
- 2019
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40. The impact of rapid on-site evaluation on thyroid fine-needle aspiration biopsy: A 2-year cancer center institutional experience.
- Author
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Pastorello RG, Destefani C, Pinto PH, Credidio CH, Reis RX, Rodrigues TA, Toledo MC, De Brot L, Costa FA, do Nascimento AG, Pinto CAL, and Saieg MA
- Subjects
- Biopsy, Fine-Needle, Evaluation Studies as Topic, Female, Follow-Up Studies, Humans, Male, Middle Aged, Prognosis, Retrospective Studies, Thyroid Gland diagnostic imaging, Thyroid Gland surgery, Thyroid Neoplasms diagnostic imaging, Thyroid Neoplasms surgery, Thyroid Nodule diagnostic imaging, Thyroid Nodule surgery, Ultrasonography, Cytodiagnosis methods, Image-Guided Biopsy methods, Thyroid Gland pathology, Thyroid Neoplasms pathology, Thyroid Nodule pathology
- Abstract
Background: The impact of rapid on-site evaluation (ROSE) on thyroid aspirates has been a matter of extensive debate. In the current study, the authors reviewed all thyroid fine-needle aspiration biopsies (FNABs) performed in their service in recent years to evaluate the impact of ROSE on final adequacy and diagnostic rates., Methods: All ultrasound-guided FNABs of the thyroid performed between July 2015 and July 2017 were included retrospectively. ROSE was performed by experienced cytopathologists, with production of Romanowsky-stained slides for immediate evaluation. When ROSE was not performed, a total of 3 needle passes were performed as the default. Final specimen adequacy and the risk of malignancy (ROM) of each The Bethesda System for Reporting Thyroid Cytopathology (TBSRTC) category were calculated in the 2 groups (ROSE and non-ROSE) and compared using the chi-square test., Results: An initial search obtained 4649 cytology specimens, 3469 of which (74.6%) underwent ROSE and 1180 of which (25.4%) did not. Patients were predominantly female (85.4%), with a mean age of 53 years. Specimen adequacy was found to be significantly higher in the ROSE group (93.4% vs 69.4%; P<.0001), with a mean number of needle passes necessary for an adequate diagnosis of 1.48 ± 0.71 (median, 1.0 needle passes; range, 1-5 needle passes). No statistical difference was observed with regard to the ROM for each TBSRTC category when the 2 groups (ROSE and non-ROSE) were compared., Conclusions: The current study data support ROSE as a valuable technique in thyroid FNAB. It was proven to significantly improve specimen adequacy with a decreased mean number of needle passes necessary to achieve an adequate cytological diagnosis and no impact on the ROM for any TBSRTC category., (© 2018 American Cancer Society.)
- Published
- 2018
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41. Prophylactic and Therapeutic Use of Strontium Ranelate Reduces the Progression of Experimental Osteoarthritis.
- Author
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Rodrigues TA, de Oliveira Freire A, Carvalho HCO, Silva GEB, Vasconcelos JW, Guerra RNM, de Sousa Cartágenes MDS, and Garcia JBS
- Abstract
Introduction: Strontium ranelate (SrRan) has the potential to interfere in the progression of osteoarthritis (OA), multifactorial disease associated with mechanical problems and articular inflammatory changes. Objectives: This study aimed to test the effects of prophylactic and therapeutic use of SrRan on clinical parameters of pain, the inflammatory process, and degradation of the articular cartilage. Methods: This was an experimental study, using a model of knee OA induced by intra-articular injection of monoiodoacetate. Thirty Wistar rats were divided into five groups and treated as indicated: control, without intervention; prophylactic, received SrRan at a daily oral dose of 250 mg/kg for 28 days before OA induction; SrRan treatments, administered 250 or 500 mg/kg/day for 28 days after the induction; and model control, received saline solution after the induction. Behavioral tests (joint incapacity, mechanical hyperalgesia, tactile sensitivity, and forced ambulation), histological evaluation of articular cartilage, and determination of inflammatory cytokines in the synovial fluid (interleukin [IL]-6, IL-10, tumor necrosis factor [TNF]-α, and interferon [INF]-γ) were performed. Results: Both prophylactic and therapeutic treatments improved the articular discomfort. A prophylactic dose of 500 mg/kg/day also improved mechanical hyperalgesia and the same dose was beneficial on tactile sensitivity. SrRan did not improve ambulation. Levels of IL-6, IL-10, TNF-α, and IFN-γ in SrRan-treated groups with OA were not significantly different compared with those in the normal control animals. The histopathological evaluation showed less articular damage in the SrRan-treated and control groups compared to the saline-treated group. Conclusion: The prophylactic and therapeutic administration of SrRan was associated with improved behavioral patterns of pain, especially joint discomfort. SrRan administration mitigated histological changes in the articular cartilage and reduced the inflammatory process, which beneficially reduced the progression of OA in the experimental model studied.
- Published
- 2018
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42. Astaxanthin counteracts the effects of heat shock on the maturation of bovine oocytes.
- Author
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Ispada J, Rodrigues TA, Risolia PHB, Lima RS, Gonçalves DR, Rettori D, Nichi M, Feitosa WB, and Paula-Lopes FF
- Subjects
- Animals, Catalase metabolism, Cattle, Female, Glutathione Peroxidase metabolism, Heat-Shock Response physiology, In Vitro Oocyte Maturation Techniques, Oocytes growth & development, Oocytes metabolism, Oxidative Stress physiology, Reactive Oxygen Species metabolism, Superoxide Dismutase metabolism, Xanthophylls pharmacology, Antioxidants pharmacology, Heat-Shock Response drug effects, Oocytes drug effects, Oxidative Stress drug effects
- Abstract
The cellular mechanisms induced by elevated temperature on oocytes are not fully understood. However, there is evidence that some of the deleterious effects of heat shock are mediated by a heat-induced increase in reactive oxygen species (ROS). In this context, carotenoid antioxidants might have a thermoprotective effect. Therefore, the objective of this study was to determine the role of astaxanthin (AST) on oocyte ROS production and on the redox profile and developmental competency of cumulus-oocyte complexes (COCs) after 14h heat shock (41°C) during in vitro maturation (IVM). Exposure of oocytes to heat shock during IVM increased ROS and reduced the ability of the oocyte to cleave and develop to the blastocyst stage. However, 12.5 and 25nM astaxanthin rescued these negative effects of heat shock; astaxanthin counteracted the heat shock-induced increase in ROS and restored oocyte developmental competency. There was no effect of astaxanthin on maturation medium lipid peroxidation or on glutathione peroxidase and catalase activity in oocytes and cumulus cells. However, astaxanthin stimulated superoxide dismutase (SOD) activity in heat-shocked cumulus cells. In conclusion, direct heat shock reduced oocyte competence, which was restored by astaxanthin, possibly through regulation of ROS and SOD activity in oocytes and COCs.
- Published
- 2018
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43. Peroxisomal monoubiquitinated PEX5 interacts with the AAA ATPases PEX1 and PEX6 and is unfolded during its dislocation into the cytosol.
- Author
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Pedrosa AG, Francisco T, Bicho D, Dias AF, Barros-Barbosa A, Hagmann V, Dodt G, Rodrigues TA, and Azevedo JE
- Subjects
- Humans, Models, Molecular, Peroxisome-Targeting Signal 1 Receptor chemistry, Peroxisomes metabolism, Protein Transport, Protein Unfolding, Ubiquitin metabolism, Ubiquitination, ATPases Associated with Diverse Cellular Activities metabolism, Cytosol metabolism, Membrane Proteins metabolism, Peroxisome-Targeting Signal 1 Receptor metabolism, Protein Interaction Maps
- Abstract
PEX1 and PEX6 are two members of the A TPases a ssociated with diverse cellular a ctivities (AAA) family and the core components of the receptor export module of the peroxisomal matrix protein import machinery. Their role is to extract monoubiquitinated PEX5, the peroxisomal protein-shuttling receptor, from the peroxisomal membrane docking/translocation module (DTM), so that a new cycle of protein transportation can start. Recent data have shown that PEX1 and PEX6 form a heterohexameric complex that unfolds substrates by processive threading. However, whether the natural substrate of the PEX1-PEX6 complex is monoubiquitinated PEX5 (Ub-PEX5) itself or some Ub-PEX5-interacting component(s) of the DTM remains unknown. In this work, we used an established cell-free in vitro system coupled with photoaffinity cross-linking and protein PEGylation assays to address this problem. We provide evidence suggesting that DTM-embedded Ub-PEX5 interacts directly with both PEX1 and PEX6 through its ubiquitin moiety and that the PEX5 polypeptide chain is globally unfolded during the ATP-dependent extraction event. These findings strongly suggest that DTM-embedded Ub-PEX5 is a bona fide substrate of the PEX1-PEX6 complex., (© 2018 Pedrosa et al.)
- Published
- 2018
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44. PEX13 Enters the RING, Lives Fast, Dies Young.
- Author
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Rodrigues TA, Francisco T, and Azevedo JE
- Subjects
- Saccharomyces cerevisiae, Ubiquitination, Peroxisomes, Pichia
- Published
- 2018
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- View/download PDF
45. Strontium ranelate as a possible disease-modifying osteoarthritis drug: a systematic review.
- Author
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Rodrigues TA, Freire AO, Bonfim BF, Cartágenes MSS, and Garcia JBS
- Subjects
- Animals, Arthralgia drug therapy, Bone Density Conservation Agents pharmacology, Bone Remodeling drug effects, Bone Resorption drug therapy, Cartilage, Articular drug effects, Disease Progression, Humans, Thiophenes pharmacology, Bone Density Conservation Agents therapeutic use, Osteoarthritis drug therapy, Thiophenes therapeutic use
- Abstract
Considering that osteoarthritis (OA) is the most prevalent joint disease worldwide, multiple pharmacological treatments have been proposed to alter the articular structure with potential benefit in the progression of the disease. The so-called disease-modifying OA drugs have been frequently investigated but conclusive findings are rare. Strontium ranelate (SrRan) is a drug usually prescribed to treat osteoporosis, with proven effects in decreasing the risk of fractures and possible effect in reducing the progression of OA. The objective of this review was to demonstrate the current panorama of knowledge on the use of SrRan in clinical and experimental models, clarifying its mechanisms of action and describing possible anti-nociceptive and anti-inflammatory effects. The systematic review was based on the PRISMA statement and included articles that are indexed in scientific databases. Fifteen studies were included: seven pre-clinical and eight clinical studies. Despite the limited number of studies, the results suggest a positive effect of SrRan in patients with OA, through changes in functional capacity and reduction of progression of morphological parameters and joint degradation, with moderate quality of evidence for those clinical outcomes. Novel studies are necessary to elucidate the molecular targets of SrRan, focusing on anti-inflammatory effects and histological changes promoted by SrRan, which seemed to reduce the progression of OA in the experimental and clinical studies.
- Published
- 2018
- Full Text
- View/download PDF
46. Protein transport into peroxisomes: Knowns and unknowns.
- Author
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Francisco T, Rodrigues TA, Dias AF, Barros-Barbosa A, Bicho D, and Azevedo JE
- Subjects
- Animals, Humans, Peroxisomal Targeting Signal 2 Receptor metabolism, Peroxisome-Targeting Signal 1 Receptor metabolism, Signal Transduction physiology, Ubiquitination physiology, Peroxisomes metabolism, Protein Transport physiology
- Abstract
Peroxisomal matrix proteins are synthesized on cytosolic ribosomes and rapidly transported into the organelle by a complex machinery. The data gathered in recent years suggest that this machinery operates through a syringe-like mechanism, in which the shuttling receptor PEX5 - the "plunger" - pushes a newly synthesized protein all the way through a peroxisomal transmembrane protein complex - the "barrel" - into the matrix of the organelle. Notably, insertion of cargo-loaded receptor into the "barrel" is an ATP-independent process, whereas extraction of the receptor back into the cytosol requires its monoubiquitination and the action of ATP-dependent mechanoenzymes. Here, we review the main data behind this model., (© 2017 WILEY Periodicals, Inc.)
- Published
- 2017
- Full Text
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47. Slow Versus Fast Robot-Assisted Locomotor Training After Severe Stroke: A Randomized Controlled Trial.
- Author
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Rodrigues TA, Goroso DG, Westgate PM, Carrico C, Batistella LR, and Sawaki L
- Subjects
- Aged, Double-Blind Method, Exercise Test methods, Exercise Therapy instrumentation, Female, Humans, Male, Middle Aged, Recovery of Function, Stroke Rehabilitation instrumentation, Treatment Outcome, Walking physiology, Exercise Therapy methods, Locomotion physiology, Robotics methods, Stroke physiopathology, Stroke Rehabilitation methods
- Abstract
Background and Purpose: Robot-assisted locomotor training on a bodyweight-supported treadmill is a rehabilitation intervention that compels repetitive practice of gait movements. Standard treadmill speed may elicit rhythmic movements generated primarily by spinal circuits. Slower-than-standard treadmill speed may elicit discrete movements, which are more complex than rhythmic movements and involve cortical areas., Objective: Compare effects of fast (i.e., rhythmic) versus slow (i.e., discrete) robot-assisted locomotor training on a bodyweight-supported treadmill in subjects with chronic, severe gait deficit after stroke., Methods: Subjects (N = 18) were randomized to receive 30 sessions (5 d/wk) of either fast or slow robot-assisted locomotor training on a bodyweight-supported treadmill in an inpatient setting. Functional ambulation category, time up and go, 6-min walk test, 10-m walk test, Berg Balance Scale, and Fugl-Meyer Assessment were administered at baseline and postintervention., Results: The slow group had statistically significant improvement on functional ambulation category (first quartile-third quartile, P = 0.004), 6-min walk test (95% confidence interval [CI] = 1.8 to 49.0, P = 0.040), Berg Balance Scale (95% CI = 7.4 to 14.8, P < 0.0001), time up and go (95% CI = -79.1 to 5.0, P < 0.0030), and Fugl-Meyer Assessment (95% CI = 24.1 to 45.1, P < 0.0001). The fast group had statistically significant improvement on Berg Balance Scale (95% CI = 1.5 to 10.5, P = 0.02)., Conclusions: In initial stages of robot-assisted locomotor training on a bodyweight-supported treadmill after severe stroke, slow training targeting discrete movement may yield greater benefit than fast training.
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- 2017
- Full Text
- View/download PDF
48. The peroxisomal matrix protein translocon is a large cavity-forming protein assembly into which PEX5 protein enters to release its cargo.
- Author
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Dias AF, Rodrigues TA, Pedrosa AG, Barros-Barbosa A, Francisco T, and Azevedo JE
- Subjects
- Amino Acid Motifs, Amino Acid Substitution, Biological Transport, Endopeptidase K metabolism, Gene Deletion, Humans, Hydrogen-Ion Concentration, Membrane Proteins chemistry, Membrane Proteins genetics, Mutagenesis, Site-Directed, Mutation, Mutation, Missense, Peptide Fragments chemistry, Peptide Fragments genetics, Peptide Fragments metabolism, Peroxisome-Targeting Signal 1 Receptor, Protein Interaction Domains and Motifs, Protein Multimerization, Receptors, Cytoplasmic and Nuclear chemistry, Receptors, Cytoplasmic and Nuclear genetics, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Recombinant Proteins chemistry, Recombinant Proteins metabolism, Repressor Proteins chemistry, Repressor Proteins genetics, Solubility, Intracellular Membranes metabolism, Membrane Proteins metabolism, Models, Biological, Peroxisomes metabolism, Receptors, Cytoplasmic and Nuclear metabolism, Repressor Proteins metabolism
- Abstract
A remarkable property of the machinery for import of peroxisomal matrix proteins is that it can accept already folded proteins as substrates. This import involves binding of newly synthesized proteins by cytosolic peroxisomal biogenesis factor 5 (PEX5) followed by insertion of the PEX5-cargo complex into the peroxisomal membrane at the docking/translocation module (DTM). However, how these processes occur remains largely unknown. Here, we used truncated PEX5 molecules to probe the DTM architecture. We found that the DTM can accommodate a larger number of truncated PEX5 molecules comprising amino acid residues 1-197 than full-length PEX5 molecules. A shorter PEX5 version (PEX5(1-125)) still interacted correctly with the DTM; however, this species was largely accessible to exogenously added proteinase K, suggesting that this protease can access the DTM occupied by a small PEX5 protein. Interestingly, the PEX5(1-125)-DTM interaction was inhibited by a polypeptide comprising PEX5 residues 138-639. Apparently, the DTM can recruit soluble PEX5 through interactions with different PEX5 domains, suggesting that the PEX5-DTM interactions are to some degree fuzzy. Finally, we found that the interaction between PEX5 and PEX14, a major DTM component, is stable at pH 11.5. Thus, there is no reason to assume that the hitherto intriguing resistance of DTM-bound PEX5 to alkaline extraction reflects its direct contact with the peroxisomal lipid bilayer. Collectively, these results suggest that the DTM is best described as a large cavity-forming protein assembly into which cytosolic PEX5 can enter to release its cargo., (© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2017
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49. Effect of strontium ranelate on pain behavior in an experimental model of osteoarthritis.
- Author
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Rodrigues TA, Sampaio AJB Junior, Nunes IDP, Cartágenes MSS, and Garcia JBS
- Subjects
- Animals, Disease Models, Animal, Male, Rats, Rats, Wistar, Bone Density Conservation Agents therapeutic use, Hyperalgesia drug therapy, Osteoarthritis, Knee drug therapy, Thiophenes therapeutic use
- Abstract
Strontium ranelate (SrRan) is a drug usually prescribed to treat osteoporosis, with proven effects of decreasing the risk of fractures and an indication of reducing the progression of osteoarthritis (OA). This study aimed to investigate the effects of SrRan as either a prophylactic or a treatment drug, using an OA rat model to assess pain behavior. A monoiodoacetate (MIA)-induced knee joint OA model in Wistar rats was used. Thirty Wistar rats (both sexes, 60 days old) were distributed in five groups of 6 rats each: the control group, that received no intervention; a prophylactic group, that received oral administration of 25 mg·kg-1·day-1 of SrRan for 28 days before induction of OA; a group treated with 25 mg·kg-1·day-1 of SrRan for 28 days after OA induction; a group treated with 50 mg·kg-1·day-1 during 28 days after OA induction; and a group that received oral saline for 28 days after induction. The assessment of pain behavior was performed considering articular incapacitation (weight-bearing test), mechanical hyperalgesia (Randall Selitto test) and motor activity (rotarod test), on days 0, 7, 14, 21, and 28. This experiment did not yield a significant difference when comparing the group that received SrRan prophylactically with the groups treated with 25 or 50 mg·kg-1·day-1 and the group that received oral saline. Thus, SrRan did not provide analgesia in either treated rats or as a prophylactic drug with the tested doses. Higher doses should be tested further to achieve possible significant results.
- Published
- 2017
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50. Determining the Topology of Peroxisomal Proteins Using Protease Protection Assays.
- Author
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Francisco T, Dias AF, Pedrosa AG, Grou CP, Rodrigues TA, and Azevedo JE
- Subjects
- Endopeptidase K metabolism, Proteolysis, Endopeptidases metabolism, Peroxisomes metabolism, Proteins metabolism
- Abstract
Protease protection assays are powerful tools to determine the topology of organelle proteins. Their simplicity, together with the fact that they are particularly suited to characterize endogenous proteins, are their major advantages and the reason why these assays have been in use for so many years. Here, we provide a detailed protocol to use with mammalian peroxisomes. Suggestions on how these assays can be controlled, and how to identify some technical pitfalls, are also presented.
- Published
- 2017
- Full Text
- View/download PDF
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