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9. Contributors

Author

Antunes, André, primary, Bhoi, Renupama, additional, Chandra Mondal, Keshab, additional, Chattopadhyay, Indranil, additional, Chattopadhyay, Jayeeta, additional, Choudhury, Yashmin, additional, Costa, Ângela M.A., additional, Das, Saurav, additional, Dey, Satarupa, additional, Ghosh, Sougata, additional, Gudiña, Eduardo J., additional, Hazarika, Parijat, additional, Kumar, Ashutosh, additional, Kumar, Santosh, additional, Makampara, Riddhi A., additional, Mitra, Sayak, additional, Mondal, Krishnendu, additional, Najar, Ishfaq Nabi, additional, Pael, Hiren K., additional, Priyanka, Prachi, additional, Rodrigues, Joana L., additional, Rodrigues, Lígia R., additional, Roy, Shubhangi, additional, Santos-Pereira, Cátia, additional, Santos, Andréia O., additional, Sarkar, Angana, additional, Sen, Shampa, additional, Sharma, Indu, additional, Shrivastava, Archita, additional, Silvério, Sara C., additional, Simões, Marta Filipa, additional, Singh, Ashish Kumar, additional, Sousa, Joana, additional, Srivastava, Nimmy, additional, Thakur, Nagendra, additional, and Umpo, Mika, additional

Published
2024
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13. Plastic Litter in SE Spain Beaches: Characterization and Metal Content

Author

Patrício Rodrigues, Joana, Rivera-Hernández, José Roberto, Bernárdez, Patrícia, Rocha-Santos, Teresa, Costa Duarte, Armando, Santos-Echeandía, Juan, Carpenter, Angela, Editorial Board Member, Kostianoy, Andrey, Series Editor, Younos, Tamim, Editorial Board Member, Scozzari, Andrea, Editorial Board Member, Vignudelli, Stefano, Editorial Board Member, Kouraev, Alexei, Editorial Board Member, Cocca, Mariacristina, editor, Ambrogi, Veronica, editor, Avolio, Roberto, editor, Castaldo, Rachele, editor, Errico, Maria Emanuela, editor, and Gentile, Gennaro, editor

Published
2023
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19. Data Management Research: an approach according to GDPR

Author

Nunes, Maria, Rodrigues, Joana, and Teixeira Lopes, Carla

Subjects
IZ. None of these, but in this section.
Abstract

The research data ara designed like factual data which include numbers, symbols, text, images and sounds, also defined as primary sources in scientific research. Subsequently, they are subject to manipulations, refinements, processes and various practices around them. Therefore, the recognition of the enormous growth of research data drives the creation of tools that allows its management and subsequent use. Thus, Data Management Research stems from the evolution of scientific objects as well as the progress of research metodologies and tools, since they support the collection, production, analysis, processing and storage of data. The treatment of data inserts into several categories and there is, inevitably, a connection with the new General Data Protection Regulation (GDPR), which is currently in an emerging stage and is receiving a lot of attention. To the GDPR concerns the protection of natural persons with egard to the processing of personal data and the free movement of such data. The rules are designed to ensure compliance with it (European Parliament, 2016). Defends the rights and freedoms of individuals and in particular their right to the protection of personal data (Cap. I, Art. 1.º, Nr. 1, 2 - European Parliament, 2016). Attached to personal data (Table 1) are the special categories of data, more properly referred as sensitive data.

Published
2019

20. Contributors

Author

Ajayeoba, Titilayo Adenike, primary, Alexandri, Maria, additional, Alimpoumpa, Dimitra, additional, Américo, Monique Ferrary, additional, Arana-Agudelo, Pedro, additional, Athès, Violaine, additional, Awasthi, Surabhi, additional, Azevedo, Vasco Ariston de Carvalho, additional, Barroso, Fernanda Alvarenga Lima, additional, Béal, Catherine, additional, Behera, Sudhanshu S., additional, Cachon, Rémy, additional, Campos, Gabriela Munis, additional, Carvalho, Rodrigo Dias de Oliveira, additional, Compaoré-Sérémé, Diarra, additional, da Silva, Tales Fernando, additional, de Jesus, Luís Cláudio Lima, additional, Dey, Gargi, additional, Didier, Montet, additional, Djè, Marcellin Koffi, additional, Donia, Wafaa, additional, Farel, Tahmineh, additional, Fernandes, Lucas Jorge da Silva, additional, Freitas, Andria dos Santos, additional, Gloria, Rafael de Assis, additional, Gupta, Reena, additional, Hossain, Mohammad Towsif, additional, Ijabadeniyi, Oluwatosin Ademola, additional, Kachrimanidou, Vasiliki, additional, Kerketta, Ankush, additional, Kopsahelis, Nikolaos, additional, Kouakou-Kouamé, Amenan Clémentine, additional, Laguna, Juliana Guimarães, additional, Lappa, Iliada K., additional, Mahajan, Gaytri, additional, Maïworé, Justine, additional, Moez, Elsaadani, additional, Montet, Didier, additional, Moussa, Marwen, additional, N’guessan, Florent Kouadio, additional, Ngang, Jean-Justin Essia, additional, Olagunju, Omotola Folake, additional, Panda, Tarak C., additional, Papadaki, Aikaterini, additional, Paramithiotis, Spiros, additional, Patel, Vishwas, additional, Pateraki, Chrysanthi, additional, Polanowska, Katarzyna, additional, Ray, Ramesh C., additional, Rodrigues, Joana L., additional, Rodrigues, Lígia R., additional, Sahar, Tarek, additional, Samandoulougou, Serge, additional, Santos, Túlio Marcos, additional, Sawadogo-Lingani, Hagrétou, additional, Sharma, Neha, additional, Sharma, Vibhuti, additional, Sundaramanickam, Arumugam, additional, Tapsoba, Fidèle Wend-Bénédo, additional, and Waré, Larissa Yacine, additional

Published
2023
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21. RISCOS E IMPACTOS DO BISFENOL A PARA A SAÚDE HUMANA

Author

FERREIRA, WELLINGTON CLAUDINO, primary, TURRA, BÁRBARA OSMARIN, additional, BONOTTO, NATHÁLIA CARDOSO DE AFONSO, additional, FLORES, THAMARA GRAZIELA, additional, MASTELLA, MOISÉS HENRIQUE, additional, RODRIGUES, JOANA ROSA, additional, AZZOLIN, VERÔNICA FARINA, additional, CRUZ, IVANA BEATRICE MÂNICA DA, additional, and BARBISAN, FERNANDA, additional

Published
2023
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23. Solutions for Data Sharing and Storage: A Comparative Analysis of Data Repositories

Author

Rodrigues, Joana, Lopes, Carla Teixeira, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Silvello, Gianmaria, editor, Corcho, Oscar, editor, Manghi, Paolo, editor, Di Nunzio, Giorgio Maria, editor, Golub, Koraljka, editor, Ferro, Nicola, editor, and Poggi, Antonella, editor

Published
2022
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30. Research Image Management Practices Reported by Scientific Literature: An Analysis by Research Domain

Author

Rodrigues Joana and Lopes Carla Teixeira

Subjects
research data management, image management, systematic review, image as data, image as metadata, Bibliography. Library science. Information resources
Abstract

Research data management is essential for safeguarding and prospecting data generated in a scientific context. Specific issues arise regarding data in image format, as this data typology poses particular challenges and opportunities; however, not much attention has been given to data as images. We reviewed 109 articles from several research domains where images were used either as data or metadata to understand how researchers specifically deal with this data format, and what are your habits and behaviors. We use the Web of Science (WoS), considering its five main areas of research. We included in the initial corpus the most relevant articles by research domain, selecting the ten most cited articles in WoS, by year, between 2010 and 2021. The selected articles should be in English and in open access. The results found that images have been used in scientific works numerous times, but, unfortunately, few are those in which they are the central element of the study. Photography is the type of image most used in most domains. In terms of the instruments used, the Technology and Life Sciences and Biomedicine domains use the microscope more, while the Arts and Humanities and Physical Sciences domains use the camera more. We found that the images are mostly produced in the context of the project, rather than reused by third parties. As for their collection scenario, these are mostly produced/used in a laboratory context. The overwhelming majority of the images present in the articles are digital, and only a small part is analog. We verify that Arts and Humanities are more likely to perform qualitative types of analyses, while Life Sciences and Biomedicine overwhelmingly use quantitative analyses. As for the issues of sharing and depositing, Life Sciences and Biomedicine is the domain that stands out the most in the tasks of depositing and sharing images. It was found that the licenses of a project are intrinsically related to the motivations for sharing results with third parties. Description, a fundamental step in the data management process, is neglected by a large number of researchers. The images are mostly not described or annotated and when this happens, researchers don’t provide much detail about this.

Published
2023
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40. Step-by-step optimization of a heterologous pathway for de novo naringenin production in Escherichia coli.

Author

Gomes, Daniela, Rodrigues, Joana L., and Rodrigues, Ligia R.

Subjects
*ESCHERICHIA coli, *CHALCONE synthase, *ALFALFA, *SYNTHETIC biology, *ARABIDOPSIS thaliana
Abstract

Naringenin is a plant polyphenol, widely explored due to its interesting biological activities, namely anticancer, antioxidant, and anti-inflammatory. Due to its potential applications and attempt to overcome the industrial demand, there has been an increased interest in its heterologous production. The microbial biosynthetic pathway to produce naringenin is composed of tyrosine ammonia-lyase (TAL), 4-coumarate-CoA ligase (4CL), chalcone synthase (CHS), and chalcone isomerase (CHI). Herein, we targeted the efficient de novo production of naringenin in Escherichia coli by performing a step-by-step validation and optimization of the pathway. For that purpose, we first started by expressing two TAL genes from different sources in three different E. coli strains. The highest p-coumaric acid production (2.54 g/L) was obtained in the tyrosine-overproducing M-PAR-121 strain carrying TAL from Flavobacterium johnsoniae (FjTAL). Afterwards, this platform strain was used to express different combinations of 4CL and CHS genes from different sources. The highest naringenin chalcone production (560.2 mg/L) was achieved by expressing FjTAL combined with 4CL from Arabidopsis thaliana (At4CL) and CHS from Cucurbita maxima (CmCHS). Finally, different CHIs were tested and validated, and 765.9 mg/L of naringenin was produced by expressing CHI from Medicago sativa (MsCHI) combined with the other previously chosen genes. To our knowledge, this titer corresponds to the highest de novo production of naringenin reported so far in E. coli. Key points: • Best enzyme and strain combination were selected for de novo naringenin production. • After genetic and operational optimizations, 765.9 mg/L of naringenin was produced. • This de novo production is the highest reported so far in E. coli. [ABSTRACT FROM AUTHOR]

Published
2024
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41. Groundwater Vulnerability Assessment in the Naturtejo UNESCO Global Geopark, Portugal

Author

Albuquerque, Teresa, Roque, Natália, Rodrigues, Joana, Antunes, Isabel Margarida, Silva, Catarina, Pisello, Anna Laura, Editorial Board Member, Hawkes, Dean, Editorial Board Member, Bougdah, Hocine, Editorial Board Member, Rosso, Federica, Editorial Board Member, Abdalla, Hassan, Editorial Board Member, Boemi, Sofia-Natalia, Editorial Board Member, Mohareb, Nabil, Editorial Board Member, Mesbah Elkaffas, Saleh, Editorial Board Member, Bozonnet, Emmanuel, Editorial Board Member, Pignatta, Gloria, Editorial Board Member, Mahgoub, Yasser, Editorial Board Member, De Bonis, Luciano, Editorial Board Member, Kostopoulou, Stella, Editorial Board Member, Pradhan, Biswajeet, Editorial Board Member, Abdul Mannan, Md., Editorial Board Member, Alalouch, Chaham, Editorial Board Member, O. Gawad, Iman, Editorial Board Member, Nayyar, Anand, Editorial Board Member, Amer, Mourad, Series Editor, Abrunhosa, Manuel, editor, Chambel, António, editor, Peppoloni, Silvia, editor, and Chaminé, Helder I., editor

Published
2021
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49. Management of Research Data in Image Format: An Exploratory Study on Current Practices

Author

Fernandes, Miguel, Rodrigues, Joana, Lopes, Carla Teixeira, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Hall, Mark, editor, Merčun, Tanja, editor, Risse, Thomas, editor, and Duchateau, Fabien, editor

Published
2020
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