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Dentre as novas tecnologias, a fitorremediação é opção para a descontaminação de áreas que receberam intensas aplicações de herbicidas. Este trabalho foi desenvolvido com o objetivo de selecionar espécies com potencial para a fitorremediação de solos contaminados com o herbicida sulfentrazone. As espécies testadas foram: Calopogonium mucunoides, híbrido de sorgo (Sorghum bicolor x Sorghum sudanense), Crotalaria breviflora, Crotalaria juncea, Canavalia ensiformis, Dolichos lablab, Stizolobium deeringianum e Stizolobium aterrimum, cultivadas em cinco doses do sulfentrazone (0, 200, 400, 800 e 1.600 g ha-1). O experimento foi instalado em casa de vegetação, utilizando-se vasos com capacidade para 6 L, preenchidos com amostras de solo coletadas na profundidade de 0-20 cm. Foram avaliadas a fitotoxicidade do herbicida, a altura de plantas e a massa de matéria seca da parte aérea e de raízes. As espécies que manifestaram os menores sintomas de fitotoxicidade e os maiores índices de altura e matéria fresca e seca foram C. juncea, C. ensiformis e D. lablab, sendo selecionadas como tolerantes ao herbicida sulfentrazone e com potencial para fitorremediação.Among the new technologies, phytoremediation is considered as an option for the decontamination of areas that thave undergone intense herbicide applications. This work aimed to select species with potential to the phytoremediation of soils contaminated with the herbicide sulfentrazone. The tested species were Calopogonium mucunoides, hybrid Sorghum (Sorghum bicolor x Sorghum sudanense), Crotalaria breviflora, Crotalaria juncea, Canavalia ensiformis, Dolichos lablab, Stizolobium deeringianum e Stizolobium aterrimum. The experiment was conducted in a greenhouse, using 6 dm³ vases filled with soil samples collected at a depth of 20 cm. The experimental design was the randomized blocks in a factorial scheme of 8 x 5, with four repetitions, which were composed by the eight plant species, and five doses of sulfentrazone (0, 200, 400, 800 and 1,600g ha-1). We evaluated the phytotoxicity of the herbicide, plant height and dry weight of shoots and roots. The species showing the least symptoms of phytotoxicity and the highest rates of height and fresh and dry biomass were C. juncea, C. ensiformis and D. lablab, which were selected as tolerant to the herbicide sulfentrazone and with potential for phytoremediation.

This paper aimed to select species with potential for phytoremediation of soils contaminated with the herbicide sulfentrazone. Eight species were evaluated: Arachis pintoi, Eleusine coracana, Crotalaria spectabilis, Crotalaria ochroleuca, Cajanus cajan, Leucaena leucocephala, Stizolobium cinereum, and Raphanus sativus. The experiment was set-up inside a greenhouse, using pots with a capacity of 6dm3 filled with soil samples collected at a depth of 0-20cm. The experimental design was arranged into randomised blocks in a factorial scheme (8 × 5) with four replications, which consisted of the combination between the species and five doses of sulfentrazone (0, 200, 400, 800, and 1,600g ha-1). The herbicide phytotoxicity, plant heights, and dry masses of shoots and roots were evaluated. The species Cajanus cajan and Leucaena leucocephala had a higher tolerance to sulfentrazone up to a dose of 400g ha-1, showing minor symptoms of phytotoxicity and smaller decreases in plant heights and in dry matter accumulation, both in the shoots and roots, when compared to the control treatment, indicating, thus, the potential to be used for further studies on phytoremediation of sulfentrazone in soil. Este trabalho teve como objetivo selecionar espécies com potencial para a fitorremediação de solos contaminados com o herbicida sulfentrazone. Foram avaliadas oito espécies: Arachis pintoi, Eleusine coracana, Crotalaria spectabilis, Crotalaria ochroleuca, Cajanus cajan, Leucaena leucocephala, Stizolobium cinereum e Raphanus sativus. O experimento foi instalado em casa de vegetação, com a utilização de vasos com capacidade para 6 dm3 preenchidos com porções de solo coletadas na profundidade de 0-20 cm. O delineamento experimental foi o de blocos casualizados em esquema fatorial 8 × 5, com quatro repetições, composto pela combinação entre as espécies e cinco doses do sulfentrazone (0, 200, 400, 800 e 1.600 g ha-1). Foram avaliadas a fitotoxicidade do herbicida, a altura de plantas e a massa da matéria seca da parte aérea e de raízes. As espécies Cajanus cajan e Leucaena leucocephala apresentaram maior tolerância ao sulfentrazone até a dose de 400 g ha-1, mostrando menores sintomas de fitotoxicidade e menores reduções na altura de plantas e no acúmulo de matéria seca, tanto na parte aérea como nas raízes, em relação ao tratamento controle, indicando, com isso, potencial de utilização para posteriores estudos de fitorremediação de sulfentrazone em solo.

Abstract Background Papillomaviruses are small nonenveloped, circular double-stranded DNA viruses that belong to the Papillomaviridae family. To date, 29 Bos taurus papillomavirus (BPV) types have been described. Studies involving mixed BPV infections have rarely been reported in contrast to human papillomavirus (HPV), which is commonly described in numerous studies showing coinfections. Moreover, previous studies had shown that HPV coinfections increase the risk of carcinogenesis. In the present study, we used rolling-circle amplification followed by a high-throughput sequencing (RCA-HTS) approach in 23 teat papillomas from southern Brazil. Results Eleven well-characterized BPV types and 14 putative new BPV types were genetically characterized into the Xi, Epsilon and Dyoxipapillomavirus genera according to phylogenetic analysis of the L1 gene, which expands the previous 29 BPV types to 43. Moreover, BPV coinfections were detected in the majority (56.3%) of the papilloma lesions analyzed, suggesting a genetic diverse “papillomavirome” in bovine teat warts. Conclusions The data generated in this study support the possibility that a wide range of BPV is probably underdetected by conventional molecular detection tools, and that BPV coinfections are underestimated and probably genetic diverse. Additionally, 14 new BPV types were characterized, increasing the knowledge regarding BPV genetic diversity.

Abstract Background The absence of Argonaute genes in the fungal pathogen Cryptococcus gattii R265 and other VGII strains indicates that yeasts of this genotype cannot have a functional RNAi pathway, an evolutionarily conserved gene silencing mechanism performed by small RNAs. The success of the R265 strain as a pathogen that caused the Pacific Northwest and Vancouver Island outbreaks may imply that RNAi machinery loss could be beneficial under certain circumstances during evolution. As a result, a hypermutant phenotype would be created with high rates of genome retrotransposition, for instance. This study therefore aimed to evaluate in silicio the effect of retrotransposons and their control mechanisms by small RNAs on genomic stability and synteny loss of C. gattii R265 through retrotransposons sequence comparison and orthology analysis with other 16 C. gattii genomic sequences available. Results Retrotransposon mining identified a higher sequence count to VGI genotype compared to VGII, VGIII, and VGIV. However, despite the lower retrotransposon number, VGII exhibited increased synteny loss and genome rearrangement events. RNA-Seq analysis indicated highly expressed retrotransposons as well as sRNA production. Conclusions Genome rearrangement and synteny loss may suggest a greater retrotransposon mobilization caused by RNAi pathway absence, but the effective presence of sRNAs that matches retrotransposon sequences means that an alternative retrotransposon silencing mechanism could be active in genomic integrity maintenance of C. gattii VGII strains.

Cryptococcus gattii is a human and animal pathogen that infects healthy hosts and caused the Pacific Northwest outbreak of cryptococcosis. The inhalation of infectious propagules can lead to internalization of cryptococcal cells by alveolar macrophages, a niche in which C. gattii cells can survive and proliferate. Although the nutrient composition of macrophages is relatively unknown, the high induction of amino acid transporter genes inside the phagosome indicates a preference for amino acid uptake instead of synthesis. However, the presence of countable errors in the R265 genome annotation indicates significant inhibition of transcriptomic analysis in this hypervirulent strain. Thus, we analyzed RNA-Seq data from in vivo and in vitro cultures of C. gattii R265 to perform the reannotation of the genome. In addition, based on in vivo transcriptomic data, we identified highly expressed genes and pathways of amino acid metabolism that would enable C. gattii to survive and proliferate in vivo. Importantly, we identified high expression in three APC amino acid transporters as well as the GABA permease. The use of amino acids as carbon and nitrogen sources, releasing ammonium and generating carbohydrate metabolism intermediaries, also explains the high expression of components of several degradative pathways, since glucose starvation is an important host defense mechanism.