93 results on '"Robins, V."'
Search Results
2. Topology and Intelligent Data Analysis
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Robins, V., Abernethy, J., Rooney, N., Bradley, E., Goos, Gerhard, editor, Hartmanis, Juris, editor, van Leeuwen, Jan, editor, R. Berthold, Michael, editor, Lenz, Hans-Joachim, editor, Bradley, Elizabeth, editor, Kruse, Rudolf, editor, and Borgelt, Christian, editor
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- 2003
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3. A note on the two symmetry-preserving covering maps of the gyroid minimal surface
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Robins, V., Ramsden, S. J., and Hyde, S. T.
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- 2005
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4. 2D hyperbolic groups induce three-periodic Euclidean reticulations
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Robins, V., Ramsden, S. J., and Hyde, S. T.
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- 2004
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5. Towards enumeration of crystalline frameworks: the 2D hyperbolic approach
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Hyde, S.T., Delgado Friedrichs, O., Ramsden, S.J., and Robins, V.
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- 2006
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6. Geometrical and topological evolution of a closed-cell aluminium foam subject to drop-weight impact: An X-ray tomography study
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Kader, M.A., primary, Brown, A.D., additional, Hazell, P.J., additional, Robins, V., additional, Escobedo, J.P., additional, and Saadatfar, M., additional
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- 2020
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7. Negotiated authoritarianism: older people's associations and social governance in contemporary China
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Robins, V and Mitter, R
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This study seeks to explore the role of older people's associations (OPAs) in 'social governance' in rural China. Specifically, it examines the role OPAs play in mediating disputes and implementing contentious policy at the grassroots. Previous studies of OPAs' role in grassroots politics have provided 'top-down', state-directed accounts of their activities. Yet these approaches overemphasise the state's role in such processes and passivize the agency of societal actors. Building on Joel Migdal's State-in-Society approach, this study will provide a more dynamic prism through which to view this topic, arguing that just as the state affects society, the reverse is also true. Specifically, this study will seek to understand how OPAs respond to the kinds of authority and obligations that local states channel through them, and ask whether such interactions provide OPAs with an opportunity to negotiate with officials over the outcomes of state policy. This study hypothesises that reliance on OPAs for stability maintenance will provide elderly actors with leverage to negotiate with the state. This study is relevant for understanding authoritarian resilience at China's rural grassroots, and for addressing questions about stat-society relations in China, in particular whether the Party-state can continue to mobilise the social energy of local communities without weakening its grip on power. This study draws on over 23 months of fieldwork in Beijing, Fujian Yunnan, and Shaanxi between 2012 and 2016. It has engaged in long-term participant observation in 30 rural villages and has drawn on 176 structured interviews, 115 semi-structured interviews and 21 focus groups.
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- 2019
8. Topology and Intelligent Data Analysis
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Robins, V., primary, Abernethy, J., additional, Rooney, N., additional, and Bradley, E., additional
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- 2003
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9. Porous Media Characterization Using Minkowski Functionals: Theories, Applications and Future Directions
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Armstrong, RT, McClure, JE, Robins, V, Liu, Z, Arns, CH, Schlüter, S, Berg, S, Armstrong, RT, McClure, JE, Robins, V, Liu, Z, Arns, CH, Schlüter, S, and Berg, S
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An elementary question in porous media research is in regard to the relationship between structure and function. In most fields, the porosity and permeability of porous media are properties of key interest. There is, however, no universal relationship between porosity and permeability since not only does the fraction of void space matter for permeability but also the connectivity of the void fraction. With the evolution of modern day X-ray microcomputed tomography (micro-CT) and advanced computing, it is now possible to visualize porous media at an unprecedented level of detail. Approaches in analyzing micro-CT data of porous structures vary in the literature from phenomenological characterization to network analysis to geometrical and/or topological measurements. This leads to a question about how to consistently characterize porous media in a way that facilitates theoretical developments. In this effort, the Minkowski functionals (MF) emerge from the field of statistical physics where it is evident that many physical processes depend on the geometry and topology of bodies or multiple bodies in 3D space. Herein we review the theoretical basis of the MF, mathematical theorems and methods necessary for porous media characterization, common measurement errors when using micro-CT data and recent findings relating the MF to macroscale porous media properties. This paper is written to provide the basics necessary for porous media characterization and theoretical developments. With the wealth of information generated from 3D imaging of porous media, it is necessary to develop an understanding of the limitations and opportunities in this exciting area of research.
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- 2019
10. Computing connectedness: disconnectedness and discreteness
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Robins, V., Meiss, J.D., and Bradley, E.
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- 2000
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11. Topological Persistence for Relating Microstructure and Capillary Fluid Trapping in Sandstones
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Herring, A. L., primary, Robins, V., additional, and Sheppard, A. P., additional
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- 2019
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12. Porous media characterization using Minkowski functionals: Theories, applications and future directions
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Armstrong, R.T., McClure, J.E., Robins, V., Liu, Z., Arns, C.H., Schlüter, Steffen, Berg, S., Armstrong, R.T., McClure, J.E., Robins, V., Liu, Z., Arns, C.H., Schlüter, Steffen, and Berg, S.
- Abstract
An elementary question in porous media research is in regard to the relationship between structure and function. In most fields, the porosity and permeability of porous media are properties of key interest. There is, however, no universal relationship between porosity and permeability since not only does the fraction of void space matter for permeability but also the connectivity of the void fraction. With the evolution of modern day X-ray microcomputed tomography (micro-CT) and advanced computing, it is now possible to visualize porous media at an unprecedented level of detail. Approaches in analyzing micro-CT data of porous structures vary in the literature from phenomenological characterization to network analysis to geometrical and/or topological measurements. This leads to a question about how to consistently characterize porous media in a way that facilitates theoretical developments. In this effort, the Minkowski functionals (MF) emerge from the field of statistical physics where it is evident that many physical processes depend on the geometry and topology of bodies or multiple bodies in 3D space. Herein we review the theoretical basis of the MF, mathematical theorems and methods necessary for porous media characterization, common measurement errors when using micro-CT data and recent findings relating the MF to macroscale porous media properties. This paper is written to provide the basics necessary for porous media characterization and theoretical developments. With the wealth of information generated from 3D imaging of porous media, it is necessary to develop an understanding of the limitations and opportunities in this exciting area of research.
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- 2018
13. Pore configuration landscape of granular crystallization
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Saadatfar, M., primary, Takeuchi, H., additional, Robins, V., additional, Francois, N., additional, and Hiraoka, Y., additional
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- 2017
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14. Variable clinical presentation of an MUC1 mutation causing medullary cystic kidney disease type 1
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Bleyer, A. J., Kmoch, S., Antignac, C., Robins, V., Kidd, K., Kelsoe, J. R., Hladik, G., Klemmer, P., Knohl, S. J., Scheinman, S. J., Vo, N., Santi, A., Harris, A., Canaday, O., Weller, N., Hulick, P. J., Vogel, K., Rahbari-Oskoui, F. F., Tuazon, J., Constantinou-Deltas, Constantinos D., Somers, D., Megarbane, A., Kimmel, P. L., Sperati, C. J., Orr-Urtreger, A., Ben-Shachar, S., Waugh, D. A., Mcginn, S., Bleyer Jr., A. J., Hodaňová, K., Vyletal, P., Živná, M., Hart, T. C., Hart, P. S., and Constantinou-Deltas, Constantinos D. [0000-0001-5549-9169]
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Male ,Pathology ,glomerulus filtration rate ,Time Factors ,Epidemiology ,urinalysis ,medicine.medical_treatment ,DNA Mutational Analysis ,variable number of tandem repeat ,genetic analysis ,Critical Care and Intensive Care Medicine ,Medullary cystic kidney disease ,Kidney ,Gastroenterology ,Tamm Horsfall glycoprotein ,Risk Factors ,middle aged ,gene mutation ,Registries ,Aged, 80 and over ,adult ,article ,Age Factors ,Middle Aged ,Polycystic Kidney, Autosomal Dominant ,Pedigree ,female ,medicine.anatomical_structure ,Phenotype ,genotyping technique ,Nephrology ,Mutation (genetic algorithm) ,Disease Progression ,Female ,mutational analysis ,Adult ,medicine.medical_specialty ,Adolescent ,Risk Assessment ,Young Adult ,medullary sponge kidney ,male ,Internal medicine ,medicine ,Humans ,Genetic Predisposition to Disease ,human ,chromosome 1 ,Dialysis ,Aged ,Retrospective Studies ,Transplantation ,business.industry ,Mucin-1 ,Editorials ,Retrospective cohort study ,mucin 1 ,medicine.disease ,major clinical study ,renin ,Mutation ,Kidney Failure, Chronic ,Gene-Environment Interaction ,Age of onset ,business ,Kidney disease - Abstract
Background and objectives The genetic cause of medullary cystic kidney disease type 1 was recently identified as a cytosine insertion in the variable number of tandem repeat region of MUC1 encoding mucoprotein-1 (MUC1), a protein that is present in skin, breast, and lung tissue, the gastrointestinal tract, and the distal tubules of the kidney. The purpose of this investigationwas to analyze the clinical characteristics of families and individuals with this mutation. Design, setting, participants, & measurements Families with autosomal dominant interstitial kidney diseasewere referred for genetic analysis over a 14-year period. Families without UMOD or REN mutations prospectively underwent genotyping for the presence of the MUC1 mutation. Clinical characteristics were retrospectively evaluated in individuals with the MUC1 mutation and historically affected individuals (persons who were both related to genetically affected individuals in such a way that ensured that they could be genetically affected and had a history of CKD stage IV or kidney failure resulting in death, dialysis, or transplantation). Results Twenty-four families were identified with the MUC1 mutation. Of 186 family members undergoing MUC1 mutational analysis, the mutation was identified in 95 individuals, 91 individuals did not have the mutation, and111 individuals were identified as historically affected. Individuals with the MUC1 mutation suffered from chronic kidney failure with a widely variable age of onset of end stage kidney disease ranging from 16 to.80 years. Urinalyses revealed minimal protein and no blood. Ultrasounds of 35 individuals showed no medullary cysts. There were no clinical manifestations of the MUC1 mutation detected in the breasts, skin, respiratory system, or gastrointestinal tract. ConclusionMUC1 mutation results in progressive chronic kidney failurewith a bland urinary sediment. The age of onset of end stage kidney disease is highly variable, suggesting that gene-gene or gene-environment interactions contribute to phenotypic variability. © 2014 by the American Society of Nephrology. 9 527 535 Cited By :15
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- 2014
15. Running a hospital patient safety campaign: a qualitative study
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Ozieranski, P, Robins, V, Minion, J, Willars, J, Wright, J, Weaver, S, Martin, GP, and Woods, MD
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Executives ,Safety Management ,Patient care ,Hospital Administrators ,Quality ,Article ,Hospitals ,England ,Medical Staff, Hospital ,Humans ,Organizational Objectives ,Behaviour ,Patient Safety ,Safety ,Qualitative Research - Abstract
Purpose – Research on patient safety campaigns has mostly concentrated on large-scale multi-organisation efforts, yet locally led improvement is increasingly promoted. The purpose of this paper is to characterise the design and implementation of an internal patient safety campaign at a large acute National Health Service hospital trust with a view to understanding how to optimise such campaigns. Design/methodology/approach – The authors conducted a qualitative study of a campaign that sought to achieve 12 patient safety goals. The authors interviewed 19 managers and 45 frontline staff, supplemented by 56 hours of non-participant observation. Data analysis was based on the constant comparative method. Findings – The campaign was motivated by senior managers’ commitment to patient safety improvement, a series of serious untoward incidents, and a history of campaign-style initiatives at the trust. While the campaign succeeded in generating enthusiasm and focus among managers and some frontline staff, it encountered three challenges. First, though many staff at the sharp end were aware of the campaign, their knowledge, and acceptance of its content, rationale, and relevance for distinct clinical areas were variable. Second, the mechanisms of change, albeit effective in creating focus, may have been too limited. Third, many saw the tempo of the campaign as too rapid. Overall, the campaign enjoyed some success in raising the profile of patient safety. However, its ability to promote change was mixed, and progress was difficult to evidence because of lack of reliable measurement. Originality/value – The study shows that single-organisation campaigns may help in raising the profile of patient safety. The authors offer important lessons for the successful running of such campaigns. The Department of Health Policy Research programme as part of a wider programme of research on behavioural and cultural change to support quality and safety in the NHS. Write up of this paper was supported by a Wellcome Trust Senior Investigator award (MDW) WT097899.
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- 2014
16. Structural and mechanical features of the order-disorder transition in experimental hard-sphere packings
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Hanifpour, M., primary, Francois, N., additional, Robins, V., additional, Kingston, A., additional, Vaez Allaei, S. M., additional, and Saadatfar, M., additional
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- 2015
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17. Unification and classification of two-dimensional crystalline patterns using orbifolds
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Hyde, S. T., Ramsden, S. J., Robins, V., Hyde, S. T., Ramsden, S. J., and Robins, V.
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- 2014
18. Unification and classification of two-dimensional crystalline patterns using orbifolds
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Hyde, S. T., primary, Ramsden, S. J., additional, and Robins, V., additional
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- 2014
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19. Finite auxetic deformations of plane tessellations
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Mitschke, H., Robins, V., Mecke, K., Schröder-Turk, G.E., Mitschke, H., Robins, V., Mecke, K., and Schröder-Turk, G.E.
- Abstract
We systematically analyse the mechanical deformation behaviour, in particular Poisson's ratio, of floppy bar-and-joint frameworks based on periodic tessellations of the plane. For frameworks with more than one deformation mode, crystallographic symmetry constraints or minimization of an angular vertex energy functional are used to lift this ambiguity. Our analysis allows for systematic searches for auxetic mechanisms in archives of tessellations; applied to the class of one- or two-uniform tessellations by regular or star polygons, we find two auxetic structures of hexagonal symmetry and demonstrate that several other tessellations become auxetic when retaining symmetries during the deformation, in some cases with large negative Poisson ratios ν<−1 for a specific lattice direction. We often find a transition to negative Poisson ratios at finite deformations for several tessellations, even if the undeformed tessellation is infinitesimally non-auxetic. Our numerical scheme is based on a solution of the quadratic equations enforcing constant edge lengths by a Newton method, with periodicity enforced by boundary conditions.
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- 2012
20. Finding auxetic frameworks in periodic tessellations
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Mitschke, H., Schwerdtfeger, J., Schury, F., Stingl, M., Körner, C., Singer, R.F., Robins, V., Mecke, K., Schröder-Turk, G.E., Mitschke, H., Schwerdtfeger, J., Schury, F., Stingl, M., Körner, C., Singer, R.F., Robins, V., Mecke, K., and Schröder-Turk, G.E.
- Abstract
It appears that most models for micro-structured materials with auxetic deformations were found by clever intuition, possibly combined with optimization tools, rather than by systematic searches of existing structure archives. Here we review our recent approach of finding micro-structured materials with auxetic mechanisms within the vast repositories of planar tessellations. This approach has produced two previously unknown auxetic mechanisms, which have Poisson's ratio νss = -1 when realized as a skeletal structure of stiff incompressible struts pivoting freely at common vertices. One of these, baptized Triangle-Square Wheels, has been produced as a linear-elastic cellular structure from Ti-6Al-4V alloy by selective electron beam melting. Its linear-elastic properties were measured by tensile experiments and yield an effective Poisson's ratio νLE ≈ -0.75, also in agreement with finite element modeling. The similarity between the Poisson's ratios νSS of the skeletal structure and νLE of the linear-elastic cellular structure emphasizes the fundamental role of geometry for deformation behavior, regardless of the mechanical details of the system. The approach of exploiting structure archives as candidate geometries for auxetic materials also applies to spatial networks and tessellations and can aid the quest for inherently three-dimensional auxetic mechanisms.
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- 2011
21. Three-dimensional space groups two-dimensional hyperbolic orbifolds and 'sponge' groups
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Hyde, S. T., primary, Ramsden, S., additional, and Robins, V., additional
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- 2011
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22. Theory and Algorithms for Constructing Discrete Morse Complexes from Grayscale Digital Images
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Robins, V, primary, Wood, P J, additional, and Sheppard, A P, additional
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- 2011
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23. Three-dimensional Euclidean nets from two-dimensional hyperbolic tilings: kaleidoscopic examples
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Ramsden, S. J., primary, Robins, V., additional, and Hyde, S. T., additional
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- 2009
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24. Topology and intelligent data analysis
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Robins, V., primary, Abernethy, J., additional, Rooney, N., additional, and Bradley, E., additional
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- 2004
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25. Topology-based signal separation
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Robins, V., primary, Rooney, N., additional, and Bradley, E., additional
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- 2004
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26. Chaos in relaxed Newton’s method: the quadratic case
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Billings, L., primary, Curry, J. H., additional, and Robins, V., additional
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- 1999
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27. Computing connectedness: An exercise in computational topology
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Robins, V, primary, Meiss, J D, additional, and Bradley, E, additional
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- 1998
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28. Response of serum triglycerides of endogenous origin to the administration of triglyceride-rich lipid particles
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Robins, S. J., primary, Fasulo, J. M., additional, Robins, V. F., additional, and Patton, G. M., additional
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- 1989
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29. An international cohort study of autosomal dominant tubulointerstitial kidney disease due to REN mutations identifies distinct clinical subtypes
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Veronika Baresova, Miroslav Votruba, Kálmán Tory, Aleš Hnízda, Jakub Sikora, Matthias T.F. Wolf, Marisa Santostefano, Neila Belghith, Lídia Balogh, Jan Živný, Tal Kopel, Robert M. Haws, Bertrand Knebelmann, Andrea Wenzel, Bodo B. Beck, Lawrence R. Shoemaker, Laurent Mesnard, Anna Jakubowska, Kendrah Kidd, Charles Shaw-Smith, Christoforos Stavrou, Mayssa Abdelwahed, Constantinos Deltas, John A. Sayer, Claudio Graziano, Rhian L Clissold, Petr Vyleťal, Stanislav Kmoch, Victoria Robins, Howard Trachtman, Michael E. Bleyer, Marie Matignon, Anthony J. Bleyer, Kathleen Claes, Jana Sovová, Irene Capelli, Philippe Grimbert, Sharon M. Moe, Luca Rampoldi, Ivana Jedličková, Karsten Häeffner, Stéphane Decramer, Kateřina Hodaňová, Helena Trešlová, Matthew R. Sinclair, Raj Munshi, Gregory Papagregoriou, Hana Hartmannová, Albert C.M. Ong, Mohamad Zaidan, Agnieszka Łaszkiewicz, Amy N. Sussman, Claudia Izzi, Martina Živná, Helena Hůlková, Francesco Scolari, Živná, M, Kidd, K, Zaidan, M, Vyleťal, P, Barešová, V, Hodaňová, K, Sovová, J, Hartmannová, H, Votruba, M, Trešlová, H, Jedličková, I, Sikora, J, Hůlková, H, Robins, V, Hnízda, A, Živný, J, Papagregoriou, G, Mesnard, L, Beck, Bb, Wenzel, A, Tory, K, Häeffner, K, Wolf, Mtf, Bleyer, Me, Sayer, Ja, Ong, Acm, Balogh, L, Jakubowska, A, Łaszkiewicz, A, Clissold, R, Shaw-Smith, C, Munshi, R, Haws, Rm, Izzi, C, Capelli, I, Santostefano, M, Graziano, C, Scolari, F, Sussman, A, Trachtman, H, Decramer, S, Matignon, M, Grimbert, P, Shoemaker, Lr, Stavrou, C, Abdelwahed, M, Belghith, N, Sinclair, M, Claes, K, Kopel, T, Moe, S, Deltas, C, Knebelmann, B, Rampoldi, L, Kmoch, S, and Bleyer, Aj
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0301 basic medicine ,Signal peptide ,Adult ,Male ,medicine.medical_specialty ,Mutant ,030232 urology & nephrology ,Chromosomal translocation ,autosomal dominant tubulointerstitial kidney disease ,characterization ,mutation ,prosegment ,renin ,signal peptide ,medicine.disease_cause ,Cohort Studies ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Internal medicine ,Renin–angiotensin system ,Renin ,medicine ,Humans ,Secretion ,Child ,Mutation ,Polycystic Kidney Diseases ,business.industry ,Endoplasmic reticulum ,Anemia ,medicine.disease ,030104 developmental biology ,Endocrinology ,Nephrology ,Female ,business ,Kidney disease - Abstract
There have been few clinical or scientific reports of autosomal dominant tubulointerstitial kidney disease due to REN mutations (ADTKD-REN), limiting characterization. To further study this, we formed an international cohort characterizing 111 individuals from 30 families with both clinical and laboratory findings. Sixty-nine individuals had a REN mutation in the signal peptide region (signal group), 27 in the prosegment (prosegment group), and 15 in the mature renin peptide (mature group). Signal group patients were most severely affected, presenting at a mean age of 19.7 years, with the prosegment group presenting at 22.4 years, and the mature group at 37 years. Anemia was present in childhood in 91% in the signal group, 69% prosegment, and none of the mature group. REN signal peptide mutations reduced hydrophobicity of the signal peptide, which is necessary for recognition and translocation across the endoplasmic reticulum, leading to aberrant delivery of preprorenin into the cytoplasm. REN mutations in the prosegment led to deposition of prorenin and renin in the endoplasmic reticulum-Golgi intermediate compartment and decreased prorenin secretion. Mutations in mature renin led to deposition of the mutant prorenin in the endoplasmic reticulum, similar to patients with ADTKD-UMOD, with a rate of progression to end stage kidney disease (63.6 years) that was significantly slower vs. the signal (53.1 years) and prosegment groups (50.8 years) (significant hazard ratio 0.367). Thus, clinical and laboratory studies revealed subtypes of ADTKD-REN that are pathophysiologically, diagnostically, and clinically distinct.
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- 2020
30. Genetic and Clinical Predictors of Age of ESKD in Individuals With Autosomal Dominant Tubulointerstitial Kidney Disease Due to UMOD Mutations
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Karl Lhotta, Peter J. Conlon, Daniel P. Gale, Victoria Robins, Miroslav Votruba, Kendrah Kidd, Céline Schaeffer, Dominik Steubl, Ying Maggie Chen, Catarina Silveira, Gianluca Caridi, Lauren Martin, Claudia Izzi, Antonio Amoroso, Eric Olinger, Jorge Reis Almeida, Stanislav Kmoch, Rita Raposeiro, Daniela Gianchino, Alena Vrbacká, Hannah C. Ainsworth, Martina Živná, Gian Marco Ghiggeri, Kateřina Hodaňová, Rosa J. Torres, Christine Gast, Joaquim Calado, Abbigail Taylor, Olivier Devuyst, Katherine A. Benson, Susan L. Murray, Cintia Fernandes de Souza, Eva Gombos, Emily Johnson, Francesco Scolari, Gianpiero L. Cavalleri, Petr Vylet'al, Jasmin Divers, Anthony J. Bleyer, Luca Rampoldi, Sofia C Jorge, Nelson Weller, UCL - SSS/IREC/NEFR - Pôle de Néphrologie, UCL - (SLuc) Service de néphrologie, Centre for Toxicogenomics and Human Health (ToxOmics), NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM), Kidd, K, Vylet’Al, P, Schaeffer, C, Olinger, E, Živná, M, Hodaňová, K, Robins, V, Johnson, E, Taylor, A, Martin, L, Izzi, C, Jorge, Sc, Calado, J, Torres, Rj, Lhotta, K, Steubl, D, Gale, Dp, Gast, C, Gombos, E, Ainsworth, H, Chen, Ym, Almeida, Jr, Fernandes de Souza, C, Silveira, C, Raposeiro, R, Weller, N, Conlon, P, Murray, S, Benson, Ka, Cavalleri, G, Votruba, M, Vrbacká, A, Amoroso, A, Gianchino, D, Caridi, G, Ghiggeri, Gm, Divers, J, Scolari, F, Devuyst, O, Rampoldi, L, Kmoch, S, and Bleyer, A
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Oncology ,medicine.medical_specialty ,autosomal dominant uromodulin kidney disease ,Tamm–Horsfall protein ,phenotype ,uromodulin ,genotype ,Population ,030232 urology & nephrology ,030204 cardiovascular system & hematology ,lcsh:RC870-923 ,rs4293393 ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Genotype ,Mendelian randomization ,medicine ,Allele ,education ,Allele frequency ,education.field_of_study ,biology ,business.industry ,medicine.disease ,lcsh:Diseases of the genitourinary system. Urology ,Minor allele frequency ,Ophthalmology ,Nephrology ,biology.protein ,business ,Kidney disease - Abstract
Introduction: Autosomal dominant tubulo-interstitial kidney disease due to UMOD mutations (ADTKD-UMOD) is a rare condition associated with high variability in the age of end-stage kidney disease (ESKD). The minor allele of rs4293393, located in the promoter of the UMOD gene, is present in 19% of the population and downregulates uromodulin production by approximately 50% and might affect the age of ESKD. The goal of this study was to better understand the genetic and clinical characteristics of ADTKD-UMOD and to perform a Mendelian randomization study to determine if the minor allele of rs4293393 was associated with better kidney survival. Methods: An international group of collaborators collected clinical and genetic data on 722 affected individuals from 249 families with 125 mutations, including 28 new mutations. The median age of ESKD was 47 years. Men were at a much higher risk of progression to ESKD (hazard ratio 1.78, P < 0.001). Results: The allele frequency of the minor rs4293393 allele was only 11.6% versus the 19% expected (P < 0.01), resulting in Hardy-Weinberg disequilibrium and precluding a Mendelian randomization experiment. An in vitro score reflecting the severity of the trafficking defect of uromodulin mutants was found to be a promising predictor of the age of ESKD. Conclusion: We report the clinical characteristics associated with 125 UMOD mutations. Male gender and a new in vitro score predict age of ESKD. publishersversion published
- Published
- 2020
31. Eight-fold increased COVID-19 mortality in autosomal dominant tubulointerstitial kidney disease due to MUC1 mutations: an observational study.
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Kidd KO, Williams AH, Taylor A, Martin L, Robins V, Sayer JA, Olinger E, Mabillard HR, Papagregoriou G, Deltas C, Stavrou C, Conlon PJ, Hogan RE, Elhassan EAE, Springer D, Zima T, Izzi C, Vrbacká A, Piherová L, Pohludka M, Radina M, Vylet'al P, Hodanova K, Zivna M, Kmoch S, and Bleyer AJ Sr
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- Humans, Male, Female, Middle Aged, Adult, Nephritis, Interstitial genetics, Aged, Registries, SARS-CoV-2 genetics, Uromodulin, Mucin-1 blood, COVID-19 mortality, COVID-19 genetics, Mutation
- Abstract
Background: MUC1 and UMOD pathogenic variants cause autosomal dominant tubulointerstitial kidney disease (ADTKD). MUC1 is expressed in kidney, nasal mucosa and respiratory tract, while UMOD is expressed only in kidney. Due to haplo-insufficiency ADTKD-MUC1 patients produce approximately 50% of normal mucin-1., Methods: To determine whether decreased mucin-1 production was associated with an increased COVID-19 risk, we sent a survey to members of an ADTKD registry in September 2021, after the initial, severe wave of COVID-19. We linked results to previously obtained ADTKD genotype and plasma CA15-3 (mucin-1) levels and created a longitudinal registry of COVID-19 related deaths., Results: Surveys were emailed to 637 individuals, with responses from 89 ADTKD-MUC1 and 132 ADTKD-UMOD individuals. 19/83 (23%) ADTKD-MUC1 survey respondents reported a prior COVID-19 infection vs. 14/125 (11%) ADTKD-UMOD respondents (odds ratio (OR) 2.35 (95%CI 1.60-3.11, P = 0.0260). Including additional familial cases reported from survey respondents, 10/41 (24%) ADTKD-MUC1 individuals died of COVID-19 vs. 1/30 (3%) with ADTKD-UMOD, with OR 9.21 (95%CI 1.22-69.32), P = 0.03. The mean plasma mucin-1 level prior to infection in 14 infected and 27 uninfected ADTKD-MUC1 individuals was 7.06 ± 4.12 vs. 10.21 ± 4.02 U/mL (P = 0.035). Over three years duration, our longitudinal registry identified 19 COVID-19 deaths in 360 ADTKD-MUC1 individuals (5%) vs. 3 deaths in 478 ADTKD-UMOD individuals (0.6%) (P = 0.0007). Multivariate logistic regression revealed the following odds ratios (95% confidence interval) for COVID-19 deaths: ADTKD-MUC1 8.4 (2.9-29.5), kidney transplant 5.5 (1.6-9.1), body mass index (kg/m
2 ) 1.1 (1.0-1.2), age (y) 1.04 (1.0-1.1)., Conclusions: Individuals with ADTKD-MUC1 are at an eight-fold increased risk of COVID-19 mortality vs. ADTKD-UMOD individuals. Haplo-insufficient production of mucin-1 may be responsible., Competing Interests: Declarations. Ethics approval and consent to participate: This study was approved by the Wake Forest University Health Sciences Institutional Review Board, Winston-Salem, NC, United States, in accordance with the Declaration of Helsinki. All individuals presented in the study provided voluntary, autonomous consent to participate. Consent for publication: Not applicable. Competing interests: AJB has also received funding from the Black Brogan Foundation, The Slim Health Foundation, Soli Deo Gloria. He has received compensation as follows: advisory board, Horizon Pharma; speaker, Natera; author, UpToDate; advisor, First Faculty of Medicine, Charles University; royalty; patent for UMOD genetic diagnosis. PJC has received funding from Astra Zeneca, Bohringher, Hansa, and medical advisory board fees. KOK, AHW, AT, AK, LM, VR, APR-C, JAS, EO, HRM, GP, CD, CS, REH, EE, DS, CI, AV, LP, TZ, MP, MR, PV, KH, MZ, and SK have nothing to disclose., (© 2024. The Author(s).)- Published
- 2024
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32. The impact of age on physical functioning after treatment for breast cancer, as measured by patient-reported outcome measures: A systematic review.
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Robins VR, Gelcich S, Absolom K, and Velikova G
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- Humans, Female, Age Factors, Aged, Middle Aged, Adult, Breast Neoplasms therapy, Patient Reported Outcome Measures, Quality of Life
- Abstract
Purpose: This systematic review aims to explore the impact of age on physical functioning post-treatment for early-stage, locally advanced, or locally recurrent breast cancer, as measured by patient-reported outcome measures (PROMs), identify PROMs used and variations in physical functioning terms/labels., Methods: MEDLINE, EmBase, PsycINFO, CINAHL and AMED were searched, along with relevant key journals and reference lists. Risk of bias (quality) assessment was conducted using a Critical Appraisal Skills Programme checklist. Data was synthesised through tables and narrative., Results: 28,207 titles were extracted from electronic databases, resulting in 44 studies with age sub-groups, and 120 without age sub-groups. Of those with findings on the impact of age, there was variability in the way findings were reported and 21 % found that age did not have a significant impact. However, 66 % of the studies found that with older age, physical functioning declined post-treatment. Comorbidities were associated with physical functioning declines. However, findings from sub-groups (breast cancer stage, treatment type and time post-treatment) lacked concordance. Twenty-eight types of PROM were used: the EORTC QLQ-C30 was most common (50.6 %), followed by the SF-36 (32.3 %). There were 145 terms/labels for physical functioning: 'physical functioning/function' was used most often (82.3 %)., Conclusions: Findings point towards an older age and comorbidities being associated with more physical functioning declines. However, it was not possible to determine if stage, treatment type and time since treatment had any influence. More consistent use of the terminology 'physical functioning/function' would aid future comparisons of study results., Competing Interests: Declaration of competing interest Professor Galina Velikova has the following conflicts of interest: Honoraria: Pfizer, Novartis, Eisai. Advisory boards: Consultancy fees from AstraZeneca, Roche, Novartis, Pfizer, Seagen, Eisai, Sanofi. Institutional grant from Pfizer., (Copyright © 2024. Published by Elsevier Ltd.)
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- 2024
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33. Maternal health and pregnancy outcomes in autosomal dominant tubulointerstitial kidney disease.
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Bleyer AJ, Kidd KO, Williams AH, Johnson E, Robins V, Martin L, Taylor A, Kim A, Bowline I, Connaughton DM, Langefeld CD, Zivna M, and Kmoch S
- Abstract
Introduction: Autosomal dominant tubulointerstitial kidney disease (ADTKD) is an increasingly recognized cause of chronic kidney disease. ADTKD pregnancy outcomes have not previously been described., Methods: A cross-sectional survey was sent to women from ADTKD families., Results: Information was obtained from 85 afffected women (164 term pregnancies) and 23 controls (50 pregnancies). Only 16.5% of genetically affected women knew they had ADTKD during pregnancy. Eighteen percent of ADTKD mothers had hypertension during pregnancy versus 12% in controls ( p = 0.54) and >40% in comparative studies of chronic kidney disease in pregnancy. Eleven percent of births of ADTKD mothers were <37 weeks versus 0 in controls ( p < 0.0001). Cesarean section occurred in 19% of pregnancies in affected women versus 38% of unaffected individuals ( p = 0.06). Only 12% of babies required a neonatal intensive care unit stay., Conclusions: ADTKD pregnancies had lower rates of hypertension during pregnancy versus other forms of chronic kidney disease, which may have contributed to good maternal and fetal outcomes., Competing Interests: The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article., (© The Author(s) 2022.)
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- 2023
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34. The intrinsic group-subgroup structures of the Diamond and Gyroid minimal surfaces in their conventional unit cells.
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Pedersen MC, Robins V, and Hyde ST
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- Crystallography, Diamond
- Abstract
The intrinsic, hyperbolic crystallography of the Diamond and Gyroid minimal surfaces in their conventional unit cells is introduced and analysed. Tables are constructed of symmetry subgroups commensurate with the translational symmetries of the surfaces as well as group-subgroup lattice graphs.
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- 2022
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35. Plasma Mucin-1 (CA15-3) Levels in Autosomal Dominant Tubulointerstitial Kidney Disease due to MUC1 Mutations.
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Vylet'al P, Kidd K, Ainsworth HC, Springer D, Vrbacká A, Přistoupilová A, Hughey RP, Alper SL, Lennon N, Harrison S, Harden M, Robins V, Taylor A, Martin L, Howard K, Bitar I, Langefeld CD, Barešová V, Hartmannová H, Hodaňová K, Zima T, Živná M, Kmoch S, and Bleyer AJ
- Subjects
- Adult, Aged, Alleles, Biomarkers blood, Case-Control Studies, Cross-Sectional Studies, Female, Healthy Volunteers, Humans, Male, Middle Aged, Mucin-1 genetics, Mutation, Nephritis, Interstitial genetics, Prognosis, Mucin-1 blood, Nephritis, Interstitial blood, Uromodulin genetics
- Abstract
Introduction: Patients with ADTKD-MUC1 have one allele producing normal mucin-1 (MUC1) and one allele producing mutant MUC1, which remains intracellular. We hypothesized that ADTKD-MUC1 patients, who have only 1 secretory-competent wild-type MUC1 allele, should exhibit decreased plasma mucin-1 (MUC1) levels. To test this hypothesis, we repurposed the serum CA15-3 assay used to measure MUC1 in breast cancer to measure plasma MUC1 levels in ADTKD-MUC1., Methods: This cross-sectional study analyzed CA15-3 levels in a reference population of 6,850 individuals, in 85 individuals with ADTKD-MUC1, and in a control population including 135 individuals with ADTKD-UMOD and 114 healthy individuals., Results: Plasma CA15-3 levels (mean ± standard deviation) were 8.6 ± 4.3 U/mL in individuals with ADTKD-MUC1 and 14.6 ± 5.6 U/mL in controls (p < 0.001). While there was a significant difference in mean CA15-3 levels, there was substantial overlap between the 2 groups. Plasma CA15-3 levels were <5 U/mL in 22% of ADTKD-MUC1 patients, in 0/249 controls, and in 1% of the reference population. Plasma CA15-3 levels were >20 U/mL in 1/85 ADTKD-MUC1 patients, in 18% of control individuals, and in 25% of the reference population. Segregation of plasma CA15-3 levels by the rs4072037 genotype did not significantly improve differentiation between affected and unaffected individuals. CA15-3 levels were minimally affected by gender and estimated glomerular filtration rate., Discussion/conclusions: Plasma CA15-3 levels in ADTKD-MUC1 patients are approximately 40% lower than levels in healthy individuals, though there is significant overlap between groups. Further investigations need to be performed to see if plasma CA15-3 levels would be useful in diagnosis, prognosis, or assessing response to new therapies in this disorder., (© 2021 The Author(s) Published by S. Karger AG, Basel.)
- Published
- 2021
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36. An international cohort study of autosomal dominant tubulointerstitial kidney disease due to REN mutations identifies distinct clinical subtypes.
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Živná M, Kidd K, Zaidan M, Vyleťal P, Barešová V, Hodaňová K, Sovová J, Hartmannová H, Votruba M, Trešlová H, Jedličková I, Sikora J, Hůlková H, Robins V, Hnízda A, Živný J, Papagregoriou G, Mesnard L, Beck BB, Wenzel A, Tory K, Häeffner K, Wolf MTF, Bleyer ME, Sayer JA, Ong ACM, Balogh L, Jakubowska A, Łaszkiewicz A, Clissold R, Shaw-Smith C, Munshi R, Haws RM, Izzi C, Capelli I, Santostefano M, Graziano C, Scolari F, Sussman A, Trachtman H, Decramer S, Matignon M, Grimbert P, Shoemaker LR, Stavrou C, Abdelwahed M, Belghith N, Sinclair M, Claes K, Kopel T, Moe S, Deltas C, Knebelmann B, Rampoldi L, Kmoch S, and Bleyer AJ
- Subjects
- Adult, Child, Cohort Studies, Female, Humans, Male, Mutation, Renin genetics, Young Adult, Anemia, Polycystic Kidney Diseases genetics
- Abstract
There have been few clinical or scientific reports of autosomal dominant tubulointerstitial kidney disease due to REN mutations (ADTKD-REN), limiting characterization. To further study this, we formed an international cohort characterizing 111 individuals from 30 families with both clinical and laboratory findings. Sixty-nine individuals had a REN mutation in the signal peptide region (signal group), 27 in the prosegment (prosegment group), and 15 in the mature renin peptide (mature group). Signal group patients were most severely affected, presenting at a mean age of 19.7 years, with the prosegment group presenting at 22.4 years, and the mature group at 37 years. Anemia was present in childhood in 91% in the signal group, 69% prosegment, and none of the mature group. REN signal peptide mutations reduced hydrophobicity of the signal peptide, which is necessary for recognition and translocation across the endoplasmic reticulum, leading to aberrant delivery of preprorenin into the cytoplasm. REN mutations in the prosegment led to deposition of prorenin and renin in the endoplasmic reticulum-Golgi intermediate compartment and decreased prorenin secretion. Mutations in mature renin led to deposition of the mutant prorenin in the endoplasmic reticulum, similar to patients with ADTKD-UMOD, with a rate of progression to end stage kidney disease (63.6 years) that was significantly slower vs. the signal (53.1 years) and prosegment groups (50.8 years) (significant hazard ratio 0.367). Thus, clinical and laboratory studies revealed subtypes of ADTKD-REN that are pathophysiologically, diagnostically, and clinically distinct., (Copyright © 2020 International Society of Nephrology. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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37. Evolution of local motifs and topological proximity in self-assembled quasi-crystalline phases.
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Cramer Pedersen M, Robins V, Mortensen K, and Kirkensgaard JJK
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Using methods from the field of topological data analysis, we investigate the self-assembly and emergence of three-dimensional quasi-crystalline structures in a single-component colloidal system. Combining molecular dynamics and persistent homology, we analyse the time evolution of persistence diagrams and particular local structural motifs. Our analysis reveals the formation and dissipation of specific particle constellations in these trajectories, and shows that the persistence diagrams are sensitive to nucleation and convergence to a final structure. Identification of local motifs allows quantification of the similarities between the final structures in a topological sense. This analysis reveals a continuous variation with density between crystalline clathrate, quasi-crystalline, and disordered phases quantified by 'topological proximity', a visualization of the Wasserstein distances between persistence diagrams. From a topological perspective, there is a subtle, but direct connection between quasi-crystalline, crystalline and disordered states. Our results demonstrate that topological data analysis provides detailed insights into molecular self-assembly., Competing Interests: The authors declare no competing interests., (© 2020 The Author(s).)
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- 2020
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38. Genetic and Clinical Predictors of Age of ESKD in Individuals With Autosomal Dominant Tubulointerstitial Kidney Disease Due to UMOD Mutations.
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Kidd K, Vylet'al P, Schaeffer C, Olinger E, Živná M, Hodaňová K, Robins V, Johnson E, Taylor A, Martin L, Izzi C, Jorge SC, Calado J, Torres RJ, Lhotta K, Steubl D, Gale DP, Gast C, Gombos E, Ainsworth HC, Chen YM, Almeida JR, de Souza CF, Silveira C, Raposeiro R, Weller N, Conlon PJ, Murray SL, Benson KA, Cavalleri GL, Votruba M, Vrbacká A, Amoroso A, Gianchino D, Caridi G, Ghiggeri GM, Divers J, Scolari F, Devuyst O, Rampoldi L, Kmoch S, and Bleyer AJ
- Abstract
Introduction: Autosomal dominant tubulo-interstitial kidney disease due to UMOD mutations (ADTKD- UMOD ) is a rare condition associated with high variability in the age of end-stage kidney disease (ESKD). The minor allele of rs4293393, located in the promoter of the UMOD gene, is present in 19% of the population and downregulates uromodulin production by approximately 50% and might affect the age of ESKD. The goal of this study was to better understand the genetic and clinical characteristics of ADTKD- UMOD and to perform a Mendelian randomization study to determine if the minor allele of rs4293393 was associated with better kidney survival., Methods: An international group of collaborators collected clinical and genetic data on 722 affected individuals from 249 families with 125 mutations, including 28 new mutations. The median age of ESKD was 47 years. Men were at a much higher risk of progression to ESKD (hazard ratio 1.78, P < 0.001)., Results: The allele frequency of the minor rs4293393 allele was only 11.6% versus the 19% expected ( P < 0.01), resulting in Hardy-Weinberg disequilibrium and precluding a Mendelian randomization experiment. An in vitro score reflecting the severity of the trafficking defect of uromodulin mutants was found to be a promising predictor of the age of ESKD., Conclusion: We report the clinical characteristics associated with 125 UMOD mutations. Male gender and a new in vitro score predict age of ESKD., (© 2020 International Society of Nephrology. Published by Elsevier Inc.)
- Published
- 2020
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39. Outcomes of patient self-referral for the diagnosis of several rare inherited kidney diseases.
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Bleyer AJ, Kidd K, Robins V, Martin L, Taylor A, Santi A, Tsoumas G, Hunt A, Swain E, Abbas M, Akinbola E, Vidya S, Moossavi S, Bleyer AJ Jr, Živná M, Hartmannová H, Hodaňová K, Vyleťal P, Votruba M, Harden M, Blumenstiel B, Greka A, and Kmoch S
- Subjects
- Adult, Female, Genetic Testing, Humans, Internet, Kidney Diseases genetics, Male, Middle Aged, Rare Diseases genetics, Referral and Consultation statistics & numerical data, Retrospective Studies, Kidney Diseases diagnosis, Rare Diseases diagnosis, Referral and Consultation classification
- Abstract
Purpose: To evaluate self-referral from the Internet for genetic diagnosis of several rare inherited kidney diseases., Methods: Retrospective study from 1996 to 2017 analyzing data from an academic referral center specializing in autosomal dominant tubulointerstitial kidney disease (ADTKD). Individuals were referred by academic health-care providers (HCPs) nonacademic HCPs, or directly by patients/families., Results: Over 21 years, there were 665 referrals, with 176 (27%) directly from families, 269 (40%) from academic HCPs, and 220 (33%) from nonacademic HCPs. Forty-two (24%) direct family referrals had positive genetic testing versus 73 (27%) families from academic HCPs and 55 (25%) from nonacademic HCPs (P = 0.72). Ninety-nine percent of direct family contacts were white and resided in zip code locations with a mean median income of $77,316 ± 34,014 versus US median income $49,445., Conclusion: Undiagnosed families with Internet access bypassed their physicians and established direct contact with an academic center specializing in inherited kidney disease to achieve a diagnosis. Twenty-five percent of all families diagnosed with ADTKD were the result of direct family referral and would otherwise have been undiagnosed. If patients suspect a rare disorder that is undiagnosed by their physicians, actively pursuing self-diagnosis using the Internet can be successful. Centers interested in rare disorders should consider improving direct access to families.
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- 2020
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40. Quality of life in patients with autosomal dominant tubulointerstitial kidney disease .
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Bleyer AJ, Kidd K, Johnson E, Robins V, Martin L, Taylor A, Pinder AJ, Bowline I, Frankova V, Živná M, Taylor KB, Kim N, Baek JJ, Hartmannová H, Hodaňová K, Vyleťal P, Votruba M, and Kmoch S
- Subjects
- Adult, Aged, Cross-Sectional Studies, Female, Genetic Testing, Humans, Male, Middle Aged, Young Adult, Kidney Diseases genetics, Kidney Diseases psychology, Mucin-1 genetics, Mutation, Quality of Life, Uromodulin genetics
- Abstract
Aims: The reaction to diagnosis and quality of life (QOL) in autosomal dominant tubulointerstitial kidney disease (ADTKD) due to UMOD and MUC mutations from the time of diagnosis until treatment for end-stage kidney disease (ESKD) has not been characterized. It is unclear how asymptomatic patients react to a positive genetic test result., Materials and Methods: A cross-sectional survey concerning QOL and genetic testing was delivered to 622 individuals who had undergone genetic testing from families with known ADTKD., Results: 286 of 622 individuals completed the survey, including 61 (21%) genetically unaffected, 36 (12%) with stage 1, 2 chronic kidney disease (CKD), 51 (18%) stage 3, 41 (14%) stage 4 pre-dialysis, 50 (17%) receiving dialysis, and 47 (16%) s/p kidney transplantation. Of 55 respondents who thought they had normal kidney function at the time of testing and were found to have ADTKD, 51 (93%) were happy testing was performed, 3 (5%) neutral, and 1 (2%) neutral/unhappy. 42 of 183 (23%) affected individuals stated that ADTKD "has a substantial effect and I think about it daily," 47 (26%) think about ADTKD weekly, 48 (26%) monthly, and 48 (26%) less than monthly. The mean PROMIS anxiety score was similar between unaffected and affected individuals and the general population. Depression was present in 41% of affected vs. 23% of unaffected individuals (p = 0.01)., Conclusion: Genetic testing of presymptomatic patients for ADTKD is reasonable when requested. This study provides reassurance regarding the impact on QOL of the increased use of genetic testing to diagnose kidney disease. ADTKD has a significant impact on QOL, with depression, not anxiety, being more prevalent in affected individuals.
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- 2019
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41. Noninvasive Immunohistochemical Diagnosis and Novel MUC1 Mutations Causing Autosomal Dominant Tubulointerstitial Kidney Disease.
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Živná M, Kidd K, Přistoupilová A, Barešová V, DeFelice M, Blumenstiel B, Harden M, Conlon P, Lavin P, Connaughton DM, Hartmannová H, Hodaňová K, Stránecký V, Vrbacká A, Vyleťal P, Živný J, Votruba M, Sovová J, Hůlková H, Robins V, Perry R, Wenzel A, Beck BB, Seeman T, Viklický O, Rajnochová-Bloudíčková S, Papagregoriou G, Deltas CC, Alper SL, Greka A, Bleyer AJ, and Kmoch S
- Subjects
- Biopsy, Needle, Case-Control Studies, Female, Humans, Immunohistochemistry, Incidence, Male, Mutation genetics, Pedigree, Polycystic Kidney, Autosomal Dominant mortality, Prognosis, Registries, Retrospective Studies, Risk Assessment, Genetic Predisposition to Disease epidemiology, Mucin-1 genetics, Polycystic Kidney, Autosomal Dominant genetics, Polycystic Kidney, Autosomal Dominant pathology
- Abstract
Background: Autosomal dominant tubulointerstitial kidney disease caused by mucin-1 gene ( MUC1 ) mutations (ADTKD- MUC1 ) is characterized by progressive kidney failure. Genetic evaluation for ADTKD- MUC1 specifically tests for a cytosine duplication that creates a unique frameshift protein (MUC1fs). Our goal was to develop immunohistochemical methods to detect the MUC1fs created by the cytosine duplication and, possibly, by other similar frameshift mutations and to identify novel MUC1 mutations in individuals with positive immunohistochemical staining for the MUC1fs protein., Methods: We performed MUC1fs immunostaining on urinary cell smears and various tissues from ADTKD- MUC1- positive and -negative controls as well as in individuals from 37 ADTKD families that were negative for mutations in known ADTKD genes. We used novel analytic methods to identify MUC1 frameshift mutations., Results: After technique refinement, the sensitivity and specificity for MUC1fs immunostaining of urinary cell smears were 94.2% and 88.6%, respectively. Further genetic testing on 17 families with positive MUC1fs immunostaining revealed six families with five novel MUC1 frameshift mutations that all predict production of the identical MUC1fs protein., Conclusions: We developed a noninvasive immunohistochemical method to detect MUC1fs that, after further validation, may be useful in the future for diagnostic testing. Production of the MUC1fs protein may be central to the pathogenesis of ADTKD- MUC1 ., (Copyright © 2018 by the American Society of Nephrology.)
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- 2018
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42. Acadian variant of Fanconi syndrome is caused by mitochondrial respiratory chain complex I deficiency due to a non-coding mutation in complex I assembly factor NDUFAF6.
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Hartmannová H, Piherová L, Tauchmannová K, Kidd K, Acott PD, Crocker JF, Oussedik Y, Mallet M, Hodaňová K, Stránecký V, Přistoupilová A, Barešová V, Jedličková I, Živná M, Sovová J, Hůlková H, Robins V, Vrbacký M, Pecina P, Kaplanová V, Houštěk J, Mráček T, Thibeault Y, Bleyer AJ, and Kmoch S
- Subjects
- Adult, Alleles, Canada, Chromosome Mapping, Exome genetics, Fanconi Syndrome pathology, Female, Genetic Predisposition to Disease, Heterozygote, Homozygote, Humans, Kidney metabolism, Kidney pathology, Lung metabolism, Lung pathology, Male, Middle Aged, Mitochondria pathology, Mitochondrial Diseases metabolism, Mitochondrial Diseases pathology, Mutation, Electron Transport Complex I genetics, Fanconi Syndrome genetics, Mitochondria metabolism, Mitochondrial Diseases genetics, Mitochondrial Proteins genetics
- Abstract
The Acadian variant of Fanconi Syndrome refers to a specific condition characterized by generalized proximal tubular dysfunction from birth, slowly progressive chronic kidney disease and pulmonary interstitial fibrosis. This condition occurs only in Acadians, a founder population in Nova Scotia, Canada. The genetic and molecular basis of this disease is unknown. We carried out whole exome and genome sequencing and found that nine affected individuals were homozygous for the ultra-rare non-coding variant chr8:96046914 T > C; rs575462405, whereas 13 healthy siblings were either heterozygotes or lacked the mutant allele. This variant is located in intron 2 of NDUFAF6 (NM_152416.3; c.298-768 T > C), 37 base pairs upstream from an alternative splicing variant in NDUFAF6 chr8:96046951 A > G; rs74395342 (c.298-731 A > G). NDUFAF6 encodes NADH:ubiquinone oxidoreductase complex assembly factor 6, also known as C8ORF38. We found that rs575462405-either alone or in combination with rs74395342-affects splicing and synthesis of NDUFAF6 isoforms. Affected kidney and lung showed specific loss of the mitochondria-located NDUFAF6 isoform and ultrastructural characteristics of mitochondrial dysfunction. Accordingly, affected tissues had defects in mitochondrial respiration and complex I biogenesis that were corrected with NDUFAF6 cDNA transfection. Our results demonstrate that the Acadian variant of Fanconi Syndrome results from mitochondrial respiratory chain complex I deficiency. This information may be used in the diagnosis and prevention of this disease in individuals and families of Acadian descent and broadens the spectrum of the clinical presentation of mitochondrial diseases, respiratory chain defects and defects of complex I specifically., (© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
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- 2016
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43. Skeletonization and Partitioning of Digital Images Using Discrete Morse Theory.
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Delgado-Friedrichs O, Robins V, and Sheppard A
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We show how discrete Morse theory provides a rigorous and unifying foundation for defining skeletons and partitions of grayscale digital images. We model a grayscale image as a cubical complex with a real-valued function defined on its vertices (the voxel values). This function is extended to a discrete gradient vector field using the algorithm presented in Robins, Wood, Sheppard TPAMI 33:1646 (2011). In the current paper we define basins (the building blocks of a partition) and segments of the skeleton using the stable and unstable sets associated with critical cells. The natural connection between Morse theory and homology allows us to prove the topological validity of these constructions; for example, that the skeleton is homotopic to the initial object. We simplify the basins and skeletons via Morse-theoretic cancellation of critical cells in the discrete gradient vector field using a strategy informed by persistent homology. Simple working Python code for our algorithms for efficient vector field traversal is included. Example data are taken from micro-CT images of porous materials, an application area where accurate topological models of pore connectivity are vital for fluid-flow modelling.
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- 2015
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44. Running a hospital patient safety campaign: a qualitative study.
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Ozieranski P, Robins V, Minion J, Willars J, Wright J, Weaver S, Martin GP, and Woods MD
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- England, Hospital Administrators psychology, Hospitals, Humans, Medical Staff, Hospital psychology, Organizational Objectives, Qualitative Research, Patient Safety, Safety Management organization & administration
- Abstract
Purpose: Research on patient safety campaigns has mostly concentrated on large-scale multi-organisation efforts, yet locally led improvement is increasingly promoted. The purpose of this paper is to characterise the design and implementation of an internal patient safety campaign at a large acute National Health Service hospital trust with a view to understanding how to optimise such campaigns., Design/methodology/approach: The authors conducted a qualitative study of a campaign that sought to achieve 12 patient safety goals. The authors interviewed 19 managers and 45 frontline staff, supplemented by 56 hours of non-participant observation. Data analysis was based on the constant comparative method., Findings: The campaign was motivated by senior managers' commitment to patient safety improvement, a series of serious untoward incidents, and a history of campaign-style initiatives at the trust. While the campaign succeeded in generating enthusiasm and focus among managers and some frontline staff, it encountered three challenges. First, though many staff at the sharp end were aware of the campaign, their knowledge, and acceptance of its content, rationale, and relevance for distinct clinical areas were variable. Second, the mechanisms of change, albeit effective in creating focus, may have been too limited. Third, many saw the tempo of the campaign as too rapid. Overall, the campaign enjoyed some success in raising the profile of patient safety. However, its ability to promote change was mixed, and progress was difficult to evidence because of lack of reliable measurement., Originality/value: The study shows that single-organisation campaigns may help in raising the profile of patient safety. The authors offer important lessons for the successful running of such campaigns.
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- 2014
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45. Development and initial validation of the Influences on Patient Safety Behaviours Questionnaire.
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Taylor N, Parveen S, Robins V, Slater B, and Lawton R
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- Adult, Clinical Competence, Factor Analysis, Statistical, Hospitals, Public, Humans, Medical Staff, Hospital psychology, Safety Management methods, United Kingdom, Young Adult, Patient Safety, Risk Reduction Behavior, Surveys and Questionnaires standards
- Abstract
Background: Understanding the factors that make it more or less likely that healthcare practitioners (HCPs) will perform certain patient safety behaviors is important in developing effective intervention strategies. A questionnaire to identify determinants of HCP patient safety behaviors does not currently exist. This study reports the development and initial validation of the Influences on Patient Safety Behaviors Questionnaire (IPSBQ) based on the Theoretical Domains Framework., Methods: Two hundred and thirty-three HCPs from three acute National Health Service Hospital Trusts in the United Kingdom completed the 34-item measure focusing on one specific patient safety behavior (using pH as the first line method for checking the position of a nasogastric tube). Confirmatory factor analysis (CFA) was undertaken to generate the model of best fit., Results: The final questionnaire consisted of 11 factors and 23 items, and CFA produced a reasonable fit: χ² (175) = 345.7, p < 0.001; CMIN/DF = 1.98; GFI = 0.90 and RMSEA = 0.06, as well as adequate levels of discriminant validity, and internal consistency (r = 0.21 to 0.64)., Conclusions: A reliable and valid theoretically underpinned measure of determinants of HCP patient safety behavior has been developed. The criterion validity of the measure is still unknown and further work is necessary to confirm the reliability and validity of this measure for other patient safety behaviors.
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- 2013
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46. Trading spaces: building three-dimensional nets from two-dimensional tilings.
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Castle T, Evans ME, Hyde ST, Ramsden S, and Robins V
- Abstract
We construct some examples of finite and infinite crystalline three-dimensional nets derived from symmetric reticulations of homogeneous two-dimensional spaces: elliptic (S (2)), Euclidean (E (2)) and hyperbolic (H (2)) space. Those reticulations are edges and vertices of simple spherical, planar and hyperbolic tilings. We show that various projections of the simplest symmetric tilings of those spaces into three-dimensional Euclidean space lead to topologically and geometrically complex patterns, including multiple interwoven nets and tangled nets that are otherwise difficult to generate ab initio in three dimensions.
- Published
- 2012
- Full Text
- View/download PDF
47. Finding auxetic frameworks in periodic tessellations.
- Author
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Mitschke H, Schwerdtfeger J, Schury F, Stingl M, Körner C, Singer RF, Robins V, Mecke K, and Schröder-Turk GE
- Subjects
- Alloys chemistry, Elasticity, Models, Molecular, Stress, Mechanical, Titanium chemistry, Manufactured Materials analysis
- Abstract
It appears that most models for micro-structured materials with auxetic deformations were found by clever intuition, possibly combined with optimization tools, rather than by systematic searches of existing structure archives. Here we review our recent approach of finding micro-structured materials with auxetic mechanisms within the vast repositories of planar tessellations. This approach has produced two previously unknown auxetic mechanisms, which have Poisson's ratio νss=-1 when realized as a skeletal structure of stiff incompressible struts pivoting freely at common vertices. One of these, baptized Triangle-Square Wheels, has been produced as a linear-elastic cellular structure from Ti-6Al-4V alloy by selective electron beam melting. Its linear-elastic properties were measured by tensile experiments and yield an effective Poisson's ratio νLE≈-0.75, also in agreement with finite element modeling. The similarity between the Poisson's ratios νSS of the skeletal structure and νLE of the linear-elastic cellular structure emphasizes the fundamental role of geometry for deformation behavior, regardless of the mechanical details of the system. The approach of exploiting structure archives as candidate geometries for auxetic materials also applies to spatial networks and tessellations and can aid the quest for inherently three-dimensional auxetic mechanisms.
- Published
- 2011
- Full Text
- View/download PDF
48. Three-dimensional Euclidean nets from two-dimensional hyperbolic tilings: kaleidoscopic examples.
- Author
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Ramsden SJ, Robins V, and Hyde ST
- Abstract
We present a method for geometric construction of periodic three-dimensional Euclidean nets by projecting two-dimensional hyperbolic tilings onto a family of triply periodic minimal surfaces (TPMSs). Our techniques extend the combinatorial tiling theory of Dress, Huson & Delgado-Friedrichs to enumerate simple reticulations of these TPMSs. We include a taxonomy of all networks arising from kaleidoscopic hyperbolic tilings with up to two distinct tile types (and their duals, with two distinct vertices), mapped to three related TPMSs, namely Schwarz's primitive (P) and diamond (D) surfaces, and Schoen's gyroid (G).
- Published
- 2009
- Full Text
- View/download PDF
49. Betti number signatures of homogeneous Poisson point processes.
- Author
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Robins V
- Abstract
The Betti numbers are fundamental topological quantities that describe the k-dimensional connectivity of an object: beta{0} is the number of connected components and beta{k} effectively counts the number of k-dimensional holes. Although they are appealing natural descriptors of shape, the higher-order Betti numbers are more difficult to compute than other measures and so have not previously been studied per se in the context of stochastic geometry or statistical physics. As a mathematically tractable model, we consider the expected Betti numbers per unit volume of Poisson-centered spheres with radius alpha. We present results from simulations and derive analytic expressions for the low intensity, small radius limits of Betti numbers in one, two, and three dimensions. The algorithms and analysis depend on alpha shapes, a construction from computational geometry that deserves to be more widely known in the physics community.
- Published
- 2006
- Full Text
- View/download PDF
50. Mutations in the uromodulin gene decrease urinary excretion of Tamm-Horsfall protein.
- Author
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Bleyer AJ, Hart TC, Shihabi Z, Robins V, and Hoyer JR
- Subjects
- Adolescent, Adult, Child, Enzyme-Linked Immunosorbent Assay, Humans, Middle Aged, Point Mutation, Uromodulin, Gene Deletion, Kidney Diseases genetics, Kidney Diseases urine, Mucoproteins genetics, Mucoproteins urine
- Abstract
Background: Mutations in the uromodulin (UMOD) gene that encodes Tamm-Horsfall protein (THP) cause an autosomal-dominant form of chronic renal failure. We have now investigated effects of UMOD gene mutations on protein expression by quantitatively measuring THP excretion., Methods: THP excretion was determined by enzyme-linked immunosorbent assay (ELISA) of urine collections obtained from 16 related individuals with a 27 bp deletion in the UMOD gene and seven individuals with other UMOD mutations. THP excretion of 22 control subjects (18 genetically related individuals and four spouses in the UMOD deletion family) was also determined., Results: The 16 individuals carrying the deletion mutation excreted 5.8 +/- 6.3 mg THP/g creatinine into their urine. The 18 unaffected relatives from the same family excreted 40.8 +/- 9.7 mg THP/g creatinine (P < 0.0001) and the four spouses excreted 43.9 +/- 25.1 mg THP/g creatinine (P < 0.0001 vs. individuals with the deletion mutation). THP excretion of seven individuals with other UMOD gene mutations was also extremely low (range of 0.14 to 5.9 mg THP/g creatinine). All individuals with UMOD mutations had low THP excretion, irrespective of gender, glomerular filtration rate (GFR), or age., Conclusion: These studies quantitatively show that the autosomal-dominant gene mutations responsible for UMOD-associated kidney disease cause a profound reduction of THP excretion. We speculate that this suppression of normal THP excretion reflects deleterious effects of mutated THP within the kidney. Such effects may also play an important role in the pathogenesis of the progressive renal failure observed in patients with UMOD gene mutations.
- Published
- 2004
- Full Text
- View/download PDF
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