79 results on '"Rimal S"'
Search Results
2. Effects of radiation on a chemically reacting flow with hydrolysis
- Author
-
Rimal, S., Pope, K., Naterer, G. F., Hawboldt, K., Rimal, S., Pope, K., Naterer, G. F., and Hawboldt, K.
- Abstract
This study focuses on modeling of heat and fluid flow with a chemical reaction in the hydrolysis step of the Copper-Chlorine (Cu-Cl) cycle. The thermochemical Cu-Cl cycle has been established as a promising method of sustainable hydrogen production because of its low heat requirement relative to the other hydrogen production cycles. There have been several studies on the heat and mass transfer of hydrolysis reactors to better understand their relative roles and optimize the overall cycle efficiency. Few or no past studies have examined the effect of radiation during the process. This study presents a semi-analytical model to study the effects of thermal radiation on the laminar boundary layer with a similarity solution in the presence of a chemical reaction. A similarity transformation is used to convert the governing partial differential equations to ordinary differential equations. The numerical method of solution is based on the shooting method with a Runge-Kutta iteration scheme. A Rosseland approximation is utilized to study thermal radiation and numerical simulations are conducted for cases with and without radiation. Past studies indicate that the presence of thermal radiation thickens the boundary layer and broaden the temperature distribution. This concept is studied and extended to the hydrolysis step of thermochemical hydrogen production in this paper. The model is first validated by a previously established system of equations and then extended to report the effects of radiation on the temperature gradient and concentration gradient in the boundary layer during the hydrolysis process. Sensitivity analysis is performed to report the influence of radiation and chemical reaction parameter in detail. A better understanding of the effects of thermal radiation in the flow with chemical reaction will be useful to improve the design of the hydrolysis reactor in the thermochemical cycle of hydrogen production and improve the overall cycle efficiency., Communication présentée lors du congrès international tenu conjointement par Canadian Society for Mechanical Engineering (CSME) et Computational Fluid Dynamics Society of Canada (CFD Canada), à l’Université de Sherbrooke (Québec), du 28 au 31 mai 2023.
- Published
- 2023
3. Effects of radiation on a chemically reacting flow with hydrolysis
- Author
-
Rimal, S., primary, Pope, K., additional, Naterer, G. F., additional, and Hawboldt, K., additional
- Published
- 2023
- Full Text
- View/download PDF
4. Analysis of Proton Flux with Solar Wind Parameters, Symmetric (SYM) and Asymmetric (ASY) H-indices
- Author
-
Giri, A., primary, Lama, A. D., additional, Adhikari, B., additional, Rimal, S., additional, and Khatri, S., additional
- Published
- 2022
- Full Text
- View/download PDF
5. Low yield but high levels of multidrug resistance in urinary tract infections in a tertiary hospital, Nepal
- Author
-
Baral, R., primary, Shrestha, L. B., additional, Ortuño-Gutiérrez, N., additional, Pyakure, P., additional, Rai, B., additional, Rimal, S. P., additional, Singh, S., additional, Sharma, S. K., additional, Khanal, B., additional, Selvaraj, K., additional, and Kumar, A. M. V., additional
- Published
- 2021
- Full Text
- View/download PDF
6. Traditional Agricultural and Medicinal Practices in the Kailash Sacred Landscape, Nepal; ICIMOD Working Paper 2017/12
- Author
-
Atreya, K., primary, Pyakurel, D., additional, Thagunna, K. S., additional, Bhatta, L. D., additional, Uprety, Y., additional, Kotru, R., additional, Oli, B. N., additional, and Rimal, S., additional
- Published
- 2017
- Full Text
- View/download PDF
7. Aging of HDPE geomembrane in three composite landfill liner configurations
- Author
-
Rowe, R. Kerry and Rimal, S.
- Subjects
Geomembranes -- Mechanical properties ,Sanitary landfills -- Buildings and facilities ,Building materials -- Service life ,Building materials -- Evaluation ,Earth sciences ,Engineering and manufacturing industries ,Science and technology - Abstract
Laboratory-accelerated aging experiments conducted to examine the depletion of antioxidant from a geomembrane (GM) underlain by a geosynthetic clay liner (GCL) are described. Three different 'protection' layers between the GM and overlying gravel and leachate are examined: (1) A traditional nonwoven geotextile (GT); (2) a GT-GCL; and (3) a GT-sand-GT layer. The GT-GCL protection layer gives an antioxidant depletion rate 0.59 to 0.66 times slower than the GT layer alone. The GT-sand-GT layer gives depletion rates 0.72-0.75 times that of the conventional GT alone. Based on Arrhenius modeling, the time required for depletion of antioxidants at 35[degrees]C is estimated to be 65 years for a GM with a GT-GCL protection layer, 50 years for a GT-sand-GT layer, and 40 years for a conventional GT protection layer. These times are all significantly greater than the depletion time for GM immersed in leachate (10 years) for the geomembrane tested. CE Database subject headings: Durability; Geomembranes; Landfills; Liners; Service life; Temperature.
- Published
- 2008
8. Depletion of antioxidants from an HDPE geomembrane in a composite liner
- Author
-
Rowe, R. Kerry and Rimal, S.
- Subjects
Composite materials -- Properties ,Service life (Engineering) -- Evaluation ,Sanitary landfills -- Research ,Geomembranes -- Properties ,Earth sciences ,Engineering and manufacturing industries ,Science and technology - Abstract
The results of two series of accelerated aging tests are reported. Both series of tests were conducted at temperatures of 85, 70, 55, and 26[degrees]C over a period of about 3 years. In the simulated liner series, the top of the geomembrane was covered with a geotextile (protection) layer that was exposed to simulated municipal solid waste (MSW) landfill leachate while the bottom of the geomembrane was in contact with a hydrated geosynthetic clay liner. In the immersion series, the geomembrane was immersed in the simulated MSW leachate, and hence, both sides were exposed to leachate. The results from oxidative induction time tests indicate that the antioxidant depletion is about 2.2-4.8 times faster for the leachate immersed geomembrane than for geomembrane in a composite liner. The higher rates are attributed to the higher extraction of antioxidants from two sides of the geomembrane immersed in leachate. The measured antioxidant depletion rates are extrapolated to a range of temperatures (0-60[degrees]C) using Arrhenius modeling. At a liner temperature of 35[degrees]C, the calculated time for the depletion of antioxidants is about 40 years for a geomembrane in a composite liner compared to 10 years if it is simply immersed in leachate. These tests suggest that to obtain realistic estimates of geomembrane service life one needs data from tests that simulate the expected field conditions and that prediction based on immersion tests may underestimate the service life. DOI: 10.1061/(ASCE)1090-0241(2008)134:1(68) CE Database subject headings: Geomembranes; Durability; Liners; Landfills; Service life; Temperature; Composite materials.
- Published
- 2008
9. Habitat suitability and threat analysis of Greater One-horned Rhinoceros Rhinoceros unicornis Linnaeus, 1758 (Mammalia: Perissodactyla: Rhinocerotidae) in Rautahat District, Nepal
- Author
-
Rimal, S., Adhikari, H., Tripathi, Shankar, Helsinki Institute of Sustainability Science (HELSUS), Earth Change Observation Laboratory (ECHOLAB), Department of Geosciences and Geography, and Doctoral Programme in Atmospheric Sciences
- Subjects
habitat suitability ,lcsh:QH1-199.5 ,vegetation analysis ,lcsh:QH540-549.5 ,1181 Ecology, evolutionary biology ,lcsh:Ecology ,rhinoceros ,threat analysis ,lcsh:General. Including nature conservation, geographical distribution ,114 Physical sciences ,1172 Environmental sciences - Abstract
The Greater One-horned Rhinoceros Rhinoceros unicornis has been listed as a Vulnerable species on IUCN Red List, Appendix I of CITES, and a protected animal under the National Parks and Wildlife Conservation Act 2029 B.S., 1973. In Nepal, it was found only in Chitwan, Bardia, Shuklaphanta and Parsa national parks, but it has recently been also reported from the forests of Rautahat. The main objectives of the study were to assess habitat suitability and threats for rhinoceros in Rautahat at an elevation range of approximately 300-1,000 m. Remote sensing data and geospatial modeling techniques were used to assess habitat suitability of rhinoceros. Vegetation assessment was carried out for tree, shrubs, and herbs of plot size 10m × 10m, 5m × 5m, 1m × 1m respectively for habitat suitability. Threat analysis was carried out using purposive sampling among local people and their perceptions were collected on the movement of rhinoceros and threats. The integration of nine explanatory variables showed that about 0.06%, 29.18%, 20.45%, and 50.31% of the study area was found to be most suitable, suitable, moderately suitable and unsuitable habitat respectively for rhinoceros. Out of 30 respondents, 37%, 23%, 20%, and 20% identified the main threat to rhinoceros to be unmanaged habitat, poaching, human-wildlife conflict and environmental factors, respectively. This study recommends parts of the Rautahat District to be extended as the habitat of rhinoceros and starting of immediate conservation initiatives in the area. © Rimal et al. 2018.
- Published
- 2018
10. Prevalence of Dirofilaria and Hemato-biochemical Effect in Street Dogs of Kathmandu Valley and Siddharthanagar Municipality, Bhairahawa, Nepal
- Author
-
Rimal, S., primary, Adhikari, A., primary, Khadka, K., primary, Thapa, B., primary, and Acharya, R., primary
- Published
- 2019
- Full Text
- View/download PDF
11. Seroprevalence and Risk Factors of Bovine Viral Diarrhea in Improved Cattle of Chitwan, Nawalpur and Rupandehi Districts of Nepal
- Author
-
Thapa, A., primary, Acharya, M. P., primary, Raut, R., primary, and Rimal, S., primary
- Published
- 2019
- Full Text
- View/download PDF
12. 17-year elevated temperature study of HDPE geomembrane longevity in air, water and leachate
- Author
-
Ewais, A. M. R., primary, Rowe, R. K., additional, Rimal, S., additional, and Sangam, H. P., additional
- Published
- 2018
- Full Text
- View/download PDF
13. The multidimensional ionotropic receptors ofDrosophila melanogaster
- Author
-
Rimal, S., primary and Lee, Y., additional
- Published
- 2017
- Full Text
- View/download PDF
14. An Assessment of the Energy Sector in Nepal; Implication for the Planning and Management of Rural Energy
- Author
-
Sharma, S., primary, Shakya, M, additional, Bhattarai, L, additional, and Rimal, S, additional
- Published
- 1991
- Full Text
- View/download PDF
15. Assessment of the effectiveness of a multi-district pediatric malnutrition program in Nepal
- Author
-
Levy, D., primary, Stockmann, C., additional, Wissenbach, J., additional, Poneru, S., additional, Bhattarai, M., additional, Rimal, S., additional, and Fassl, B., additional
- Published
- 2016
- Full Text
- View/download PDF
16. The multidimensional ionotropic receptors of Drosophila melanogaster.
- Author
-
Rimal, S. and Lee, Y.
- Subjects
- *
INSECT communication , *SYMPATRIC speciation , *CELL receptors , *CHEMORECEPTORS , *ION channels - Abstract
Ionotropic receptors (IRs), which form ion channels, can be categorized into conserved 'antennal IRs', which define the first olfactory receptor family of insects, and species-specific 'divergent IRs', which are expressed in gustatory receptor neurones. These receptors are located primarily in cell bodies and dendrites, and are highly enriched in the tips of the dendritic terminals that convey sensory information to higher brain centres. Antennal IRs play important roles in odour and thermosensation, whereas divergent IRs are involved in other important biological processes such as taste sensation. Some IRs are known to play specific biological roles in the perception of various molecules; however, many of their functions have not yet been defined. Although progress has been made in this field, many functions and mechanisms of these receptors remain unknown. In this review, we provide a comprehensive summary of the current state of knowledge in this field. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
17. Text Book of Pediatric Gastroenterology Hepatology and Nutrition
- Author
-
Neopane, A, primary and Rimal, S, primary
- Published
- 2015
- Full Text
- View/download PDF
18. Erratum: Evaluation of Plasma Damage to Low-k Dielectric Trench Structures by Multiple Internal Reflection Infrared Spectroscopy [ECS Solid State Lett., 3, N1 (2014)]
- Author
-
Rimal, S., primary, Mukherjee, T., additional, Abdelghani, J., additional, Goswami, A., additional, Chyan, O., additional, Stillahn, J., additional, Chiba, Y., additional, and Maekawa, K., additional
- Published
- 2014
- Full Text
- View/download PDF
19. Evaluation of Plasma Damage to Low-k Dielectric Trench Structures by Multiple Internal Reflection Infrared Spectroscopy
- Author
-
Rimal, S., primary, Mukherjee, T., additional, Abdelghani, J., additional, Goswami, A., additional, Chyan, O., additional, Stillahn, J., additional, Chiba, Y., additional, and Maekawa, K., additional
- Published
- 2013
- Full Text
- View/download PDF
20. Bonding Structure of Model Fluorocarbon Polymer Residue Determined by Functional Group Specific Chemical Derivatization
- Author
-
Mukherjee, T., primary, Rimal, S., additional, Koskey, S., additional, Chyan, O., additional, Singh, K. J., additional, and Myers, A. M., additional
- Published
- 2013
- Full Text
- View/download PDF
21. Durability of fluorinated high density polyethylene geomembrane in the Arctic
- Author
-
Rowe, R. Kerry, primary, Rimal, S., additional, Arnepalli, D.N., additional, and Bathurst, R.J., additional
- Published
- 2010
- Full Text
- View/download PDF
22. Ageing of HDPE geomembranes in jet fuel A-1
- Author
-
Rimal, S., primary and Rowe, R.K., additional
- Published
- 2009
- Full Text
- View/download PDF
23. Diffusion modelling of OIT depletion from HDPE geomembrane in landfill applications
- Author
-
Rimal, S., primary and Rowe, R. K., additional
- Published
- 2009
- Full Text
- View/download PDF
24. Ageing of HDPE geomembrane exposed to air, water and leachate at different temperatures☆
- Author
-
Rowe, R.K., primary, Rimal, S., additional, and Sangam, H., additional
- Published
- 2009
- Full Text
- View/download PDF
25. Performance of a geocomposite liner for containing Jet A-1 spill in an extreme environment
- Author
-
Rowe, R.K., primary, Mukunoki, T., additional, Bathurst, R.J., additional, Rimal, S., additional, Hurst, P., additional, and Hansen, S., additional
- Published
- 2007
- Full Text
- View/download PDF
26. The Performance of a Composite Liner for Retaining Hydrocarbons under Extreme Environmental Conditions
- Author
-
Rowe, R. K., primary, Mukunoki, T., additional, Bathurst, R. J., additional, Rimal, S., additional, Hurst, P., additional, and Hansen, S., additional
- Published
- 2005
- Full Text
- View/download PDF
27. Acute appendicitis in elderly patients: a challenge for surgeons
- Author
-
Nabin Pokharel, Sapkota P, Kc B, Rimal S, Thapa S, and Shakya R
- Subjects
Aged, 80 and over ,Male ,Chi-Square Distribution ,Postoperative Complications ,Treatment Outcome ,Nepal ,Incidence ,Humans ,Female ,Appendicitis ,Aged ,Retrospective Studies - Abstract
The classic symptoms of acute appendicitis are seldom seen in the elderly patient. More subtle symptoms and the more virulent pathologic course allow the disease to progress rapidly and insidiously. This leads to delayed hospitalization, diagnosis and treatment. The high incidence of concomitant diseases and the multiplicity of differential diagnostic possibilities in this age group are also factors. The aim of this study is to compare the results of appendicitis operated at Lumbini Medical College, Pravas, in patients younger than 60 and patient elder than 60 years of age. All patients aged 60 years and older who underwent appendectomy for appendicitis between January 2008, and December 2011, were studied and compared with the patients who were younger than 60 years of age. All the operations were performed by consultant surgeons at Lumbini Medical College, Pravas, Tansen. Preoperative USG was done in all the cases. Preoperative antibiotics were given in all the cases. All patients underwent appendectomy as an emergency basis. The results were compared with regard to age, sex, pre-operative evaluation, operative duration and findings, postoperative course, duration of hospital stay, and mortality rate. There were 50 patients in group 1 and 150 patients in group 2 who met the inclusion criteria. The mean age (64 years for group 1 and 28 years for group 2), sex, preoperative suggestion of appendicitis (group 1, 35 [70%] of 50 patients; group 2, 135 [90%] of 150 patients), and duration of the preoperative hospitalization over 24 hours (group 1, 1 patients [20%]; group 2, 30 patients [20%]) were similar in both groups. Laparoscopy was used in (group 1, 5 patients [10%]; group 2, 6 patients [4%] and associated with no significant difference in the duration of hospitalization, frequency of appendiceal perforation or abscess, occurrence of complications, or mortality. The length of operating time was more in the first group. The mean hospital stay was 5.3 in group 1 and 2.2 in group 2 (p0.05). Also duration of Hospital stay was 9.5 days for perforated appendicitis and 5.4 for non perforated appendicitis in both group (p0.05). Advanced age adversely affects clinical diagnosis, the stage of the disease and the outcomes. Late presentation, delayed diagnosis, presence of perforation and co-morbidities are associated with poor outcome from surgery.
28. Experience with common bile duct exploration at Lumbini Medical College
- Author
-
Nabin Pokharel, Sapkota P, Kc B, and Rimal S
- Subjects
Adult ,Common Bile Duct ,Operative Time ,Length of Stay ,Middle Aged ,Hospitals, University ,Young Adult ,Choledocholithiasis ,Treatment Outcome ,Humans ,Cholecystectomy ,Female ,Cholangiography ,Aged - Abstract
Common bile duct stones represent a significant danger to patients, because they can lead to biliary colic, obstructive jaundice, cholangitis, or pancreatitis. Common bile duct stones either migrate from the gallbladder or form primarily within the bile ducts themselves. Primary stones are more common in South Asia and are usually sequelae of biliary infection and stasis. In the United States and other Western countries, common bile duct stones are predominantly secondary stones, having formed in the gallbladder. In patients who have gallstones, and in whom a cholecystectomy is considered, common bile duct stones can be found preoperatively, intraoperatively, or postoperatively. Ten percent to 15% of patients undergoing a cholecystectomy will be found to have choledocholithiasis at some point during their treatment. We present our case of 16 patients of common bile duct stones with or without cholelithiasis from April 2011 to March 2012. To review the treatment and outcome of patients with common bile duct (CBD) stones who underwent cholecystecomy with open common bile exploration (CBDE). We analysed the fact that cholecystectomy with commonbile duct exploration still holds as a good modality of treatment where ERCP (Endoscopic Retrograde cholangio pancreaticogram) is not available. All 16 persons in age group of 20-65 years, all females with body weight in the range of 45-60 kgs undergoing inpatient common bile duct exploration during April 2011- March 2012 were included. Common bile duct exploration was successful in all patients. Mean operating time was 120 +/- 40 minutes and length of hospital stay was 13 +/- 3days. 3 complications (18.75%) were recorded, 2 cases of retained stone (12.5%) who underwent choledochoduodenostomy. In 16 patients undergoing common bile duct exploration, CBD stones were discovered with flexible choledochoscope and intraoperative cholangiography. None of the Gallbladder specimen revealed any feature of malignancy in final histopatholgical report. All patients are doing fine till date. Open common bile duct exploration can still be a gold standard technique in set up where ERCP is not available. The results of common bile duct exploration are good with less complications in experienced hands.
29. The p53 target DRAM1 modulates calcium homeostasis and ER stress by promoting contact between lysosomes and the ER through STIM1.
- Author
-
Wang X, Geng J, Rimal S, Sui Y, Pan J, Qin Z, and Lu B
- Subjects
- Humans, Animals, Mice, Autophagy physiology, Autophagy-Related Protein-1 Homolog metabolism, Autophagy-Related Protein-1 Homolog genetics, Neoplasm Proteins metabolism, Neoplasm Proteins genetics, Parkinson Disease metabolism, Parkinson Disease genetics, Parkinson Disease pathology, Lysosomes metabolism, Stromal Interaction Molecule 1 metabolism, Stromal Interaction Molecule 1 genetics, Calcium metabolism, Endoplasmic Reticulum metabolism, Tumor Suppressor Protein p53 metabolism, Tumor Suppressor Protein p53 genetics, Endoplasmic Reticulum Stress physiology, Homeostasis, Membrane Proteins metabolism, Membrane Proteins genetics
- Abstract
It is well established that DNA Damage Regulated Autophagy Modulator 1 (DRAM1), a lysosomal protein and a target of p53, participates in autophagy. The cellular functions of DRAM1 beyond autophagy remain elusive. Here, we show p53-dependent upregulation of DRAM1 in mitochondrial damage-induced Parkinson's disease (PD) models and exacerbation of disease phenotypes by DRAM1. We find that the lysosomal location of DRAM1 relies on its intact structure including the cytosol-facing C-terminal domain. Excess DRAM1 disrupts endoplasmic reticulum (ER) structure, triggers ER stress, and induces protective ER-phagy. Mechanistically, DRAM1 interacts with stromal interacting molecule 1 (STIM1) to tether lysosomes to the ER and perturb STIM1 function in maintaining intracellular calcium homeostasis. STIM1 overexpression promotes cellular health by restoring calcium homeostasis, ER stress response, ER-phagy, and AMP-activated protein kinase (AMPK)-Unc-51 like autophagy activating kinase 1 (ULK1) signaling in cells with excess DRAM1. Thus, by promoting organelle contact between lysosomes and the ER, DRAM1 modulates ER structure and function and cell survival under stress. Our results suggest that DRAM1 as a lysosomal protein performs diverse roles in cellular homeostasis and stress response. These findings may have significant implications for our understanding of the role of the p53/DRAM1 axis in human diseases, from cancer to neurodegenerative diseases., Competing Interests: Competing interests statement:The authors declare no competing interest.
- Published
- 2024
- Full Text
- View/download PDF
30. Translation stalling induced mitochondrial entrapment of ribosomal quality control related proteins offers cancer cell vulnerability.
- Author
-
Ojha R, Tantray I, Banerjee S, Rimal S, Thirunavukkarasu S, Srikrishna S, Chiu W, Mete U, Sharma A, Kakkar N, and Lu B
- Abstract
Ribosome-associated quality control (RQC) monitors ribosomes for aberrant translation. While the role of RQC in neurodegenerative disease is beginning to be appreciated, its involvement in cancer is understudied. Here, we show a positive correlation between RQC proteins ABCE1 and ZNF598 and high-grade muscle-invasive bladder cancer. Translational stalling by the inhibitor emetine (EME) leads to increased mitochondrial localization of RQC factors including ABCE1, ZNF598, and NEMF, which are continuously imported into mitochondria facilitated by increased mitochondrial membrane potential caused by EME. This reduces the availability of these factors in the cytosol, compromising the effectiveness of RQC in handling stalled ribosomes in the cytosol and those associated with the mitochondrial outer membrane (MOM). Imported RQC factors form aggregates inside the mitochondria in a process we term stalling-induced mitochondrial stress (SIMS). ABCE1 plays a crucial role in maintaining mitochondrial health during SIMS. Notably, cancer stem cells (CSCs) exhibit increased expression of ABCE1 and consequently are more resistant to EME-induced mitochondrial dysfunction. This points to a potential mechanism of drug resistance by CSCs. Our study highlights the significance of mitochondrial entrapment of RQC factors such as ABCE1 in determining the fate of cancer cells versus CSCs. Targeting ABCE1 or other RQC factors in translational inhibition cancer therapy may help overcome drug resistance., Competing Interests: Additional Declarations: There is NO Competing Interest. No potential confl icts of interest weredisclosed by the other authors. DISCLOSURE OF POTENTIAL CONFLICTS OF INTEREST: No potential conflicts of interest were disclosed by the other authors.
- Published
- 2024
- Full Text
- View/download PDF
31. Ribosome stalling during c-myc translation presents actionable cancer cell vulnerability.
- Author
-
Khaket TP, Rimal S, Wang X, Bhurtel S, Wu YC, and Lu B
- Abstract
Myc is a major driver of tumor initiation, progression, and maintenance. Up-regulation of Myc protein level rather than acquisition of neomorphic properties appears to underlie most Myc-driven cancers. Cellular mechanisms governing Myc expression remain incompletely defined. In this study, we show that ribosome-associated quality control (RQC) plays a critical role in maintaining Myc protein level. Ribosomes stall during the synthesis of the N-terminal portion of cMyc, generating aberrant cMyc species and necessitating deployment of the early RQC factor ZNF598 to handle translational stress and restore cMyc translation. ZNF598 expression is up-regulated in human glioblastoma (GBM), and its expression positively correlates with that of cMyc. ZNF598 knockdown inhibits human GBM neurosphere formation in cell culture and Myc-dependent tumor growth in vivo in Drosophila . Intriguingly, the SARS-COV-2-encoded translational regulator Nsp1 impinges on ZNF598 to restrain cMyc translation and consequently cMyc-dependent cancer growth. Remarkably, Nsp1 exhibits synthetic toxicity with the translation and RQC-related factor ATP-binding cassette subfamily E member 1, which, despite its normally positive correlation with cMyc in cancer cells, is co-opted by Nsp1 to down-regulate cMyc and inhibit tumor growth. Ribosome stalling during c-myc translation thus offers actionable cancer cell vulnerability., (© The Author(s) 2024. Published by Oxford University Press on behalf of National Academy of Sciences.)
- Published
- 2024
- Full Text
- View/download PDF
32. Molecular and Entomological Characterization of 2023 Dengue Outbreak in Dhading District, Central Nepal.
- Author
-
Rimal S, Shrestha S, Paudel SW, Shah Y, Bhandari G, Pandey K, Kharbuja A, Kapandji M, Gautam I, Bhujel R, Takamatsu Y, Bhandari R, Klungthong C, Shrestha SK, Fernandez S, Malavige GN, Pandey BD, Urano T, Morita K, Ngwe Tun MM, and Dumre SP
- Subjects
- Nepal epidemiology, Humans, Animals, Male, Female, Adult, Adolescent, Middle Aged, Young Adult, Child, Serotyping, Child, Preschool, Phylogeny, Dengue epidemiology, Dengue virology, Dengue Virus genetics, Dengue Virus classification, Dengue Virus isolation & purification, Disease Outbreaks, Aedes virology, Mosquito Vectors virology, Serogroup
- Abstract
In 2023, Nepal faced its second largest dengue outbreak ever, following a record-breaking number of dengue cases in 2022, characterized by the expansion of infections into areas of higher altitudes. However, the characteristics of the 2023 circulating dengue virus (DENV) and the vector density remain poorly understood. Therefore, we performed DENV serotyping, clinical and laboratory assessment, and entomological analysis of the 2023 outbreak in central Nepal. A total of 396 fever cases in Dhading hospital suspected of being DENV positive were enrolled, and blood samples were collected and tested by different techniques including PCR. Of these, 278 (70.2%) had confirmed DENV infection. Multiple serotypes (DENV-1, -2, and -3) were detected. DENV-2 (97.5%) re-emerged after six years in Dhading while DENV-3 was identified for the first time. Dengue inpatients had significantly higher frequency of anorexia, myalgia, rash, diarrhea, nausea, vomiting, abdominal pain, and thrombocytopenia ( p < 0.05). In this area, Aedes mosquitoes largely predominated (90.7%) with the majority being A. aegypti (60.7%). We also found high levels of Aedes index (20.0%) and container index (16.7%). We confirmed multiple DENV serotype circulation with serotype re-emergence and new serotype introduction, and high vector density in 2023. These findings call for the urgent initiation and scaling up of DENV molecular surveillance in human and mosquito populations for dengue control and prevention in Nepal.
- Published
- 2024
- Full Text
- View/download PDF
33. RACK1 and IRE1 participate in the translational quality control of amyloid precursor protein in Drosophila models of Alzheimer's disease.
- Author
-
Li Y, Liu D, Zhang X, Rimal S, Lu B, and Li S
- Subjects
- Animals, Amyloid beta-Peptides metabolism, Protein Serine-Threonine Kinases, Drosophila melanogaster, Disease Models, Animal, Alzheimer Disease metabolism, Amyloid beta-Protein Precursor genetics, Amyloid beta-Protein Precursor metabolism, Drosophila Proteins genetics, Drosophila Proteins metabolism, Receptors for Activated C Kinase genetics, Receptors for Activated C Kinase metabolism, Endoribonucleases genetics, Endoribonucleases metabolism
- Abstract
Alzheimer's disease (AD) is a progressive neurodegenerative disorder characterized by dysregulation of the expression and processing of the amyloid precursor protein (APP). Protein quality control systems are dedicated to remove faulty and deleterious proteins to maintain cellular protein homeostasis (proteostasis). Identidying mechanisms underlying APP protein regulation is crucial for understanding AD pathogenesis. However, the factors and associated molecular mechanisms regulating APP protein quality control remain poorly defined. In this study, we show that mutant APP with its mitochondrial-targeting sequence ablated exhibited predominant endoplasmic reticulum (ER) distribution and led to aberrant ER morphology, deficits in locomotor activity, and shortened lifespan. We searched for regulators that could counteract the toxicity caused by the ectopic expression of this mutant APP. Genetic removal of the ribosome-associated quality control (RQC) factor RACK1 resulted in reduced levels of ectopically expressed mutant APP. By contrast, gain of RACK1 function increased mutant APP level. Additionally, overexpression of the ER stress regulator (IRE1) resulted in reduced levels of ectopically expressed mutant APP. Mechanistically, the RQC related ATPase VCP/p97 and the E3 ubiquitin ligase Hrd1 were required for the reduction of mutant APP level by IRE1. These factors also regulated the expression and toxicity of ectopically expressed wild type APP, supporting their relevance to APP biology. Our results reveal functions of RACK1 and IRE1 in regulating the quality control of APP homeostasis and mitigating its pathogenic effects, with implications for the understanding and treatment of AD., Competing Interests: Conflict of interest The authors declare that they have no conflict of interest., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
34. Stalled translation by mitochondrial stress upregulates a CNOT4-ZNF598 ribosomal quality control pathway important for tissue homeostasis.
- Author
-
Geng J, Li S, Li Y, Wu Z, Bhurtel S, Rimal S, Khan D, Ohja R, Brandman O, and Lu B
- Subjects
- Animals, Humans, Carrier Proteins metabolism, Drosophila metabolism, Homeostasis, Mammals metabolism, Ribosomes metabolism, Saccharomyces cerevisiae metabolism, Transcription Factors genetics, Transcription Factors metabolism, Ubiquitin-Protein Ligases metabolism, Ubiquitination, Protein Biosynthesis, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Translational control exerts immediate effect on the composition, abundance, and integrity of the proteome. Ribosome-associated quality control (RQC) handles ribosomes stalled at the elongation and termination steps of translation, with ZNF598 in mammals and Hel2 in yeast serving as key sensors of translation stalling and coordinators of downstream resolution of collided ribosomes, termination of stalled translation, and removal of faulty translation products. The physiological regulation of RQC in general and ZNF598 in particular in multicellular settings is underexplored. Here we show that ZNF598 undergoes regulatory K63-linked ubiquitination in a CNOT4-dependent manner and is upregulated upon mitochondrial stresses in mammalian cells and Drosophila. ZNF598 promotes resolution of stalled ribosomes and protects against mitochondrial stress in a ubiquitination-dependent fashion. In Drosophila models of neurodegenerative diseases and patient cells, ZNF598 overexpression aborts stalled translation of mitochondrial outer membrane-associated mRNAs, removes faulty translation products causal of disease, and improves mitochondrial and tissue health. These results shed lights on the regulation of ZNF598 and its functional role in mitochondrial and tissue homeostasis., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
35. Role of Mentzer Index for Differential Diagnosis of Iron Deficiency Anaemia and Beta Thalassemia Trait.
- Author
-
Shah TP, Shrestha A, Agrawal JP, Rimal S, and Basnet A
- Abstract
Background: The most common differential diagnoses of microcytic hypochromic anaemia are iron deficiency anaemia and beta thalassemia. Globally, thalassemia affects approximately 4.4 out of every 10,000 live births whereas iron deficiency anaemia comprises half of all anaemia worldwide as per world health organization. The definitive diagnosis of beta thalassemia trait and iron deficiency anaemia requires haemoglobin analysis and iron studies respectively, which are not possible to perform in all suspected cases especially in resource limited settings. The study aims to evaluate the reliability of mentzer index in differentiating beta thalassemia trait from iron deficiency anaemia., Methods: This was a cross sectional, observational study done on 59 patients each of beta thalassemia trait and iron deficiency anaemia from August 2019 to July 2020. Patients who were found to be having iron deficiency anaemia diagnosed by iron studies and beta thalassemia trait diagnosed by Hb electrophoresis were enrolled in the study using simple random sampling technique., Results: Mentzer index correctly identified 95.76% of overall patients. Area under receiver operating characteristic curve was 0.993 (95% CI, 0.985-1.002, p<0.001). For beta thalassemia trait, mentzer index showed a sensitivity of 93.2%, specificity of 98.3%, positive predictive value of 98.2%, negative predictive value of 93.5%; while for iron deficiency anaemia, sensitivity of 98.3%, specificity of 93.2%, positive predictive value of 93.5% and negative predictive value of 98.2%. Youden's index was 91.5., Conclusions: The findings of the present study make mentzer index a reliable screening method, especially in a resource poor setting, like Nepal. Further confirmation by gold standard tests is recommended.
- Published
- 2023
- Full Text
- View/download PDF
36. Possible high risk of transmission of the Nipah virus in South and South East Asia: a review.
- Author
-
Joshi J, Shah Y, Pandey K, Ojha RP, Joshi CR, Bhatt LR, Dumre SP, Acharya PR, Joshi HR, Rimal S, Shahi R, Pokharel D, Khadka KS, Dahal B, Nepal S, Dhami RS, Pant KP, Basnet R, and Pandey BD
- Abstract
Nipah virus (NiV) is a zoonotic, single-stranded RNA virus from the family Paramyxoviridae, genus Henipavirus. NiV is a biosafety-level-4 pathogen that is mostly spread by Pteropus species, which serve as its natural reservoir host. NiV is one of the major public health challenges in South and South East Asia. However, few molecular studies have been conducted to characterise NiV in a specific region. The main objective of this review is to understand the epidemiology, pathogenesis, molecular surveillance, transmission dynamics, genetic diversity, reservoir host, clinical characteristics, and phylogenetics of NiV. South and South East Asian nations have experienced NiV outbreaks. Phylogenetic analysis confirmed that two primary clades of NiV are in circulation. In humans, NiV causes severe respiratory illness and/or deadly encephalitis. NiV is mainly diagnosed by ELISA along with PCR. Therefore, we recommend that the governments of the region support the One Health approach to reducing the risk of zoonotic disease transmission in their respective countries., (© 2023. Japanese Society of Tropical Medicine.)
- Published
- 2023
- Full Text
- View/download PDF
37. Prevalence and clinical impact of anemia in patients diagnosed with chronic obstructive pulmonary disease: A cross-sectional study.
- Author
-
Rimal S, Das SK, Basnet A, Rauniyar TP, Pandey KR, and Kuikel S
- Abstract
Background and Aims: Unlike classically described polycythemia, anemia is found to be more prevalent in patients with chronic obstructive pulmonary disease (COPD). Anemia increases the cost of hospital stay and causes an increased risk of adverse outcomes including death in COPD patients. This study was done to find the prevalence of anemia in COPD patients, the factors associated, and the outcomes of anemic COPD., Methods: It was a quantitative, descriptive-analytical, and cross-sectional study conducted in Tribhuvan University Teaching Hospital's medical wards and the Emergency Room from September 2019 to September 2020. A simple random sampling method was used. Clinical information was obtained, and patients were followed up 3 months after discharge to document the number of exacerbations and deaths if present., Results: The patients in our study had a mean age of 70.80 ± 11.16 years. Most were female. Most (85.5%) had a history of exposure to firewood smoke. Twenty-three percent of the patients had anemia and these patients had significantly greater mortality 3 months postdischarge. Middle-old and old were more likely to have anemia with odds ratio (OR) of 2.55 (confidence interval [CI]: 0.48-13.5) and 13.6 (CI: 1.12-24.2), respectively. Current smokers had less likelihood of having anemia (OR: 0.05, CI: 0.006-0.49). Multivariate analysis showed that age, sex, and smoking status were significant determinants of anemia in COPD. There was no association between anemia and duration of hospital stay. However, mortality was higher at 3 months in COPD patients with anemia ( p < 0.001)., Conclusion: In COPD patients, anemia is prevalent comorbidity that is significantly linked to higher mortality but not to exacerbations. It is unknown, though, if treating anemia in COPD patients will affect the patient's outcome. Additional research in this area may be possible., Competing Interests: The authors declare no conflict of interest., (© 2023 The Authors. Health Science Reports published by Wiley Periodicals LLC.)
- Published
- 2023
- Full Text
- View/download PDF
38. Chylous ascites following retroperitoneal lymphadenectomy in a patient with recurrent dysgerminoma of ovary: A case report.
- Author
-
Nepali A, Guragain A, Devkota K, Paudyal P, Prasad Rimal S, Kafle A, Jung Karki R, Kumari S, and Shrestha R
- Abstract
Chylous ascites is an uncommon condition of accumulation of milky fluid rich in lymph and chylomicrons in the peritoneal cavity. Post-surgical complications following dissection near the base of the mesentery, retroperitoneum, or near the cisterna chyli, malignancies (e.g., pancreatic adenocarcinomas, lymphoma, gastric carcinoma), cirrhosis, and trauma are the prime causes of chylous ascites. Here we report a rare case of chylous ascites following clearance of isolated paraaortic nodal recurrence in a 28-year-old female with dysgerminoma of ovary. The patient developed chylous ascites on the fifth day following surgery, which was confirmed by an increased drain fluid triglyceride level. She was managed conservatively with dietary modification including a high-protein and carbohydrate but low-fat-based diet mainly containing medium-chain fatty acids. Subsequently, she recovered from chylous ascites on the sixteenth day, completed second line chemotherapy, and is now doing well., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Authors.)
- Published
- 2023
- Full Text
- View/download PDF
39. Obturator hernia (the little old lady's hernia) diagnosed via computed tomography: a case report.
- Author
-
Bohara S, Karki S, Gautam A, Regmi BU, Rimal S, Khadka L, Pokharel A, Gurung B, and Rawal SB
- Abstract
Obturator hernia is an infrequent clinical entity of abdominal wall hernia, accounting for an incidence rate ranging from 0.073 to 2.2% of all hernias and being responsible for 0.2-1.6% of all cases of mechanical intestinal obstruction. The computed tomography (CT) scan, as an imaging modality, is critical in improving the diagnostic rate of obturator hernia., Case Presentation: The authors herein report an 87-year-old thin male patient with a known history of chronic obstructive pulmonary disease who presenting with complaints of abdominal pain for 3 days and constipation for 2 days, as well as one episode of vomiting without any features of peritoneal irritation, which was diagnosed early as a right-sided obturator hernia via CT and managed with exploratory laparotomy with hernia reduction and polypropylene mesh repair., Discussion: Obturator hernia is a rare surgical phenomenon with a varied clinical spectrum, ranging from asymptomatic to presenting as intestinal obstruction. The CT scan plays a critical role in the detection of obturator hernias, which ameliorates the possible significant postoperative morbidity and mortality., Conclusion: This report demonstrates that a high index of suspicion combined with CT imaging aids in early diagnosis and management, thus overcoming the reluctant morbidity., Competing Interests: All the authors declare that they have no conflicts of interest., (Copyright © 2023 The Author(s). Published by Wolters Kluwer Health, Inc.)
- Published
- 2023
- Full Text
- View/download PDF
40. Reverse electron transfer is activated during aging and contributes to aging and age-related disease.
- Author
-
Rimal S, Tantray I, Li Y, Pal Khaket T, Li Y, Bhurtel S, Li W, Zeng C, and Lu B
- Subjects
- Mice, Animals, Humans, NAD, Reactive Oxygen Species metabolism, Electrons, Aging genetics, Aging metabolism, Drosophila genetics, Drosophila metabolism, Induced Pluripotent Stem Cells metabolism, Alzheimer Disease genetics
- Abstract
Mechanisms underlying the depletion of NAD
+ and accumulation of reactive oxygen species (ROS) in aging and age-related disorders remain poorly defined. We show that reverse electron transfer (RET) at mitochondrial complex I, which causes increased ROS production and NAD+ to NADH conversion and thus lowered NAD+ /NADH ratio, is active during aging. Genetic or pharmacological inhibition of RET decreases ROS production and increases NAD+ /NADH ratio, extending the lifespan of normal flies. The lifespan-extending effect of RET inhibition is dependent on NAD+ -dependent Sirtuin, highlighting the importance of NAD+ /NADH rebalance, and on longevity-associated Foxo and autophagy pathways. RET and RET-induced ROS and NAD+ /NADH ratio changes are prominent in human induced pluripotent stem cell (iPSC) model and fly models of Alzheimer's disease (AD). Genetic or pharmacological inhibition of RET prevents the accumulation of faulty translation products resulting from inadequate ribosome-mediated quality control, rescues relevant disease phenotypes, and extends the lifespan of Drosophila and mouse AD models. Deregulated RET is therefore a conserved feature of aging, and inhibition of RET may open new therapeutic opportunities in the context of aging and age-related diseases including AD., (© 2023 The Authors.)- Published
- 2023
- Full Text
- View/download PDF
41. The mTORC2/AKT/VCP axis is associated with quality control of the stalled translation of poly(GR) dipeptide repeats in C9-ALS/FTD.
- Author
-
Li Y, Geng J, Rimal S, Wang H, Liu X, Lu B, and Li S
- Subjects
- Animals, C9orf72 Protein genetics, C9orf72 Protein metabolism, Dipeptides metabolism, DNA Repeat Expansion, DNA-Binding Proteins metabolism, Drosophila metabolism, Mammals metabolism, Proto-Oncogene Proteins c-akt genetics, Proto-Oncogene Proteins c-akt metabolism, Quality Control, Valosin Containing Protein metabolism, Mechanistic Target of Rapamycin Complex 2 metabolism, Amyotrophic Lateral Sclerosis metabolism, Frontotemporal Dementia pathology
- Abstract
Expansion of G4C2 hexanucleotide repeats in the chromosome 9 ORF 72 (C9ORF72) gene is the most common genetic cause of amyotrophic lateral sclerosis (ALS) with frontotemporal dementia (C9-ALS/FTD). Dipeptide repeats generated by unconventional translation, especially the R-containing poly(GR), have been implicated in C9-ALS/FTD pathogenesis. Mutations in other genes, including TAR DNA-binding protein 43 KD (TDP-43), fused in sarcoma (FUS), and valosin-containing protein, have also been linked to ALS/FTD, and upregulation of amyloid precursor protein (APP) is observed at the early stage of ALS and FTD. Fundamental questions remain as to the relationships between these ALS/FTD genes and whether they converge on similar cellular pathways. Here, using biochemical, cell biological, and genetic analyses in Drosophila disease models, patient-derived fibroblasts, and mammalian cell culture, we show that mechanistic target of rapamycin complex 2 (mTORC2)/AKT signaling is activated by APP, TDP-43, and FUS and that mTORC2/AKT and its downstream target valosin-containing protein mediate the effect of APP, TDP-43, and FUS on the quality control of C9-ALS/FTD-associated poly(GR) translation. We also find that poly(GR) expression results in reduction of global translation and that the coexpression of APP, TDP-43, and FUS results in further reduction of global translation, presumably through the GCN2/eIF2α-integrated stress response pathway. Together, our results implicate mTORC2/AKT signaling and GCN2/eIF2α-integrated stress response as common signaling pathways underlying ALS/FTD pathogenesis., Competing Interests: Conflict of interest The authors declare that they have no conflicts of interest with the contents of this article., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
42. Co-Circulation of Dengue Virus Serotypes 1, 2, and 3 during the 2022 Dengue Outbreak in Nepal: A Cross-Sectional Study.
- Author
-
Rimal S, Shrestha S, Pandey K, Nguyen TV, Bhandari P, Shah Y, Acharya D, Adhikari N, Rijal KR, Ghimire P, Takamatsu Y, Pandey BD, Fernandez S, Morita K, Ngwe Tun MM, and Dumre SP
- Subjects
- Humans, Cross-Sectional Studies, Nepal epidemiology, Serogroup, Disease Outbreaks, Dengue Virus genetics, Dengue epidemiology
- Abstract
The largest dengue outbreak in the history of Nepal occurred in 2022, with a significant number of casualties. It affected all 77 districts, with the nation's capital, Kathmandu (altitude 1300 m), being the hardest hit. However, the molecular epidemiology of this outbreak, including the dengue virus (DENV) serotype(s) responsible for this epidemic, remain unknown. Here, we report the epidemic trends, clinico-laboratory features, and virus serotypes and their viral load profiles that are associated with this outbreak in Nepal. Dengue-suspected febrile patients were investigated by routine laboratory, serological, and molecular tools, including a real-time quantitative polymerase chain reaction (qRT-PCR). Of the 538 dengue-suspected patients enrolled, 401 (74.5%) were diagnosed with dengue. Among these dengue cases, 129 (32.2%) patients who required hospital admission had significant associations with myalgia, rash, diarrhea, retro-orbital pain, bleeding, and abdominal pain. DENV-1, -2, and -3 were identified during the 2022 epidemic, with a predominance of DENV-1 (57.1%) and DENV-3 (32.1%), exhibiting a new serotype addition. We found that multiple serotypes circulated in 2022, with a higher frequency of hospitalizations, more severe dengue, and more deaths than in the past. Therefore, precise mapping of dengue and other related infections through integrated disease surveillance, evaluation of the dynamics of population-level immunity and virus evolution should be the urgent plans of action for evidence-based policy-making for dengue control and prevention in the country.
- Published
- 2023
- Full Text
- View/download PDF
43. Copper hydrophytoremediation by wetland macrophytes in semi-hydroponic and hydroponic mesocosms.
- Author
-
Rimal S, Karam A, Chen J, Parajuli A, and Khasa DP
- Subjects
- Wetlands, Copper, Ecosystem, Hydroponics, Biodegradation, Environmental, Plants, Water Pollutants, Chemical analysis, Metals, Heavy analysis
- Abstract
High levels of trace metals such as copper (Cu) can affect water quality and induce toxic effects on living organisms in aquatic ecosystems. This research assesses the potential capacity for Cu phytofiltration by three emergent macrophytes from Cu-contaminated sediments and water containing five concentrations of Cu (0, 50, 100, 150, and 200 µM). We conducted a greenhouse study using semi-hydroponic and hydroponic experimental conditions to simulate a natural wetland system. We selected three plant types that were collected in Quebec (Canada): native Typha latifolia , and native and, exotic Phragmites australis . Under semi-hydroponic, the responses indicated an almost 3-fold higher mean root Cu-accumulation from Cu-0 to Cu-Sediment (80.3-226.1 mg kg
-1 ) and an 8.6-fold increase (122.2-1045.5 mg kg-1 ) for Cu-0 to Cu-200 µM under hydroponic conditions, resulting in Cu translocation < 1 and BCF >1 under both conditions. We found an inverse correlation between increasing doses of Cu with mean aboveground and belowground biomass together with height, and root length of selected plants under hydroponic conditions. Our results indicate that these wetland macrophytes could be useful in heavy-metal removal from Cu-contaminated sediments and Cu-enriched water.- Published
- 2023
- Full Text
- View/download PDF
44. A novel TFG variant of uncertain significance in amyotrophic lateral sclerosis: A case report and review of literature.
- Author
-
Dhakal B, Sapkota S, Parajuli A, Khadka B, Subedi B, Paudel R, Thapa R, and Rimal S
- Abstract
Introduction: Amyotrophic lateral sclerosis is a neurodegenerative disease with wide variation of genetics associated with it. Among the different genes described, mutation in TFG is a rare finding in amyotrophic lateral sclerosis., Case Presentation: A 35 years old right-handed male presenting with ipsilateral weakness was diagnosed with amyotrophic lateral sclerosis. He was found to have missense variant of TFG with uncertain significance on exome sequencing., Clinical Discussion: The genetics involved in amyotrophic lateral sclerosis is ever-evolving. The identification of new TFG variant in this disease adds another evidence to the role of TFG in neurodegenerative disease., Conclusions: The finding of TFG variant of uncertain significance is a rare finding in amyotrophic lateral sclerosis. And with the identification of new TFG variant, it leads to further understanding of spectrum of TFG and its pathophysiology in amyotrophic lateral sclerosis., Competing Interests: The authors report no conflicts of interest., (© 2022 The Authors.)
- Published
- 2022
- Full Text
- View/download PDF
45. Prevention of ribosome collision-induced neuromuscular degeneration by SARS CoV-2-encoded Nsp1.
- Author
-
Wang X, Rimal S, Tantray I, Geng J, Bhurtel S, Khaket TP, Li W, Han Z, and Lu B
- Subjects
- Alzheimer Disease, Amyotrophic Lateral Sclerosis, Animals, Drosophila, Humans, Pandemics, Parkinson Disease, Proto-Oncogene Proteins c-akt, RNA, Messenger metabolism, SARS-CoV-2 genetics, COVID-19 genetics, Neurodegenerative Diseases genetics, RNA-Dependent RNA Polymerase, Ribosomes genetics, Ribosomes metabolism, Viral Nonstructural Proteins metabolism
- Abstract
An overarching goal of aging and age-related neurodegenerative disease research is to discover effective therapeutic strategies applicable to a broad spectrum of neurodegenerative diseases. Little is known about the extent to which targetable pathogenic mechanisms are shared among these seemingly diverse diseases. Translational control is critical for maintaining proteostasis during aging. Gaining control of the translation machinery is also crucial in the battle between viruses and their hosts. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent of the ongoing COVID-19 pandemic. Here, we show that overexpression of SARS-CoV-2-encoded nonstructural protein 1 (Nsp1) robustly rescued neuromuscular degeneration and behavioral phenotypes in Drosophila models of Alzheimer's disease, Parkinson's disease, and amyotrophic lateral sclerosis. These diseases share a common mechanism: the accumulation of aberrant protein species due to the stalling and collision of translating ribosomes, leading to proteostasis failure. Our genetic and biochemical analyses revealed that Nsp1 acted in a multipronged manner to resolve collided ribosomes, abort stalled translation, and remove faulty translation products causative of disease in these models, at least in part through the ribosome recycling factor ABCE1, ribosome-associated quality-control factors, autophagy, and AKT signaling. Nsp1 exhibited exquisite specificity in its action, as it did not modify other neurodegenerative conditions not known to be associated with ribosome stalling. These findings uncover a previously unrecognized mechanism of Nsp1 in manipulating host translation, which can be leveraged for combating age-related neurodegenerative diseases that are affecting millions of people worldwide and currently without effective treatment.
- Published
- 2022
- Full Text
- View/download PDF
46. Many dissimilar NusG protein domains switch between α-helix and β-sheet folds.
- Author
-
Porter LL, Kim AK, Rimal S, Looger LL, Majumdar A, Mensh BD, Starich MR, and Strub MP
- Subjects
- Amino Acid Sequence, Protein Conformation, alpha-Helical, Protein Conformation, beta-Strand, Protein Domains, Transcription Factors
- Abstract
Folded proteins are assumed to be built upon fixed scaffolds of secondary structure, α-helices and β-sheets. Experimentally determined structures of >58,000 non-redundant proteins support this assumption, though it has recently been challenged by ~100 fold-switching proteins. Though ostensibly rare, these proteins raise the question of how many uncharacterized proteins have shapeshifting-rather than fixed-secondary structures. Here, we use a comparative sequence-based approach to predict fold switching in the universally conserved NusG transcription factor family, one member of which has a 50-residue regulatory subunit experimentally shown to switch between α-helical and β-sheet folds. Our approach predicts that 24% of sequences in this family undergo similar α-helix ⇌ β-sheet transitions. While these predictions cannot be reproduced by other state-of-the-art computational methods, they are confirmed by circular dichroism and nuclear magnetic resonance spectroscopy for 10 out of 10 sequence-diverse variants. This work suggests that fold switching may be a pervasive mechanism of transcriptional regulation in all kingdoms of life., (© 2022. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
- Published
- 2022
- Full Text
- View/download PDF
47. Cushing Syndrome in a Pediatric Patient with Topical Steroid Overuse.
- Author
-
Kuikel S, Aryal S, Basnyat RS, and Rimal S
- Abstract
Cushing syndrome is a state of hypercortisolism from exogenous or endogenous exposure to glucocorticoids resulting in various clinical manifestations. In this case report, we present a case of a 15-month-old child who presented with cushingoid facies due to over-the-counter misuse of a very potent topical steroid (clobetasol 0.05%) for suspected scabies. Laboratory measurement of urinary free cortisol level was low, and 8 : 00 am basal cortisol level was measured, which was decreased, which confirmed the diagnosis of Cushing syndrome due to exogenous source. Over-the-counter topical steroids should not be used, and one should always consult a registered medical practitioner before using such products. Physicians when prescribing topical steroids should warn patients about the potential side effects of prolonged use of topical steroids., Competing Interests: The authors declare that they have no conflicts of interest., (Copyright © 2022 Sandip Kuikel et al.)
- Published
- 2022
- Full Text
- View/download PDF
48. Delayed Visual Loss in a Patient with Snake Bite: Case Report of an Unusual Neuro-Ophthalmic Presentation.
- Author
-
Kuikel S, Rimal S, Ojha R, Sitaula S, Karn R, Gajurel B, Rajbhandari R, Gautam N, Paudel S, and Shrestha A
- Abstract
Neurotoxin-related optic neuritis (ON) after snake bite is uncommon. Here, we present a case of a 70-year-old female who developed bilateral painless loss of vision after she received treatment with anti-snake venom (ASV). She had only perception of light on assessment of visual acuity on admission which then improved drastically after administration of intravenous methylprednisolone (MP) after making the provisional diagnosis of ON on the basis of history and clinical findings of the patient. Imaging and visual-evoked potential could not be done initially, and they were done after the administration of intravenous MP which had normal findings. ASV, though being a lifesaving treatment, has been sometimes associated with ON., Competing Interests: The authors have no conflicts of interest to declare., (Copyright © 2022 by S. Karger AG, Basel.)
- Published
- 2022
- Full Text
- View/download PDF
49. An Unusual Case of Eosinophilia with Systemic Lupus Erythematosus: A Case Report and Review of Literature.
- Author
-
Mishra A, Kuikel S, Rauniyar R, Poudel S, Thapa S, Pathak N, Rimal S, Pandey KR, and Jha S
- Abstract
Eosinophilia can be caused by various conditions, parasitic infection being the most common cause. Here, we present a case of a 17-year male who presented with multisystem involvement and eosinophilia. He was later diagnosed to have systemic lupus erythematosus with eosinophilia which is a rare combination. Despite being a diagnostic challenge, these patients can be well managed with immunosuppressive therapy if recognized in time., Competing Interests: The authors declare that they have no conflicts of interest., (Copyright © 2022 Aman Mishra et al.)
- Published
- 2022
- Full Text
- View/download PDF
50. Regulation of reverse electron transfer at mitochondrial complex I by unconventional Notch action in cancer stem cells.
- Author
-
Ojha R, Tantray I, Rimal S, Mitra S, Cheshier S, and Lu B
- Subjects
- Animals, Cell Line, Tumor, Cell Proliferation physiology, Cell Respiration physiology, Disease Models, Animal, Drosophila, Electron Transport physiology, Electron Transport Complex I physiology, Electrons, Glioblastoma genetics, Glioblastoma metabolism, Humans, Mice, Mice, Inbred NOD, Mitochondria metabolism, NAD metabolism, Neoplastic Stem Cells physiology, Reactive Oxygen Species metabolism, Electron Transport Complex I metabolism, Neoplastic Stem Cells metabolism, Receptors, Notch metabolism
- Abstract
Metabolic flexibility is a hallmark of many cancers where mitochondrial respiration is critically involved, but the molecular underpinning of mitochondrial control of cancer metabolic reprogramming is poorly understood. Here, we show that reverse electron transfer (RET) through respiratory chain complex I (RC-I) is particularly active in brain cancer stem cells (CSCs). Although RET generates ROS, NAD
+ /NADH ratio turns out to be key in mediating RET effect on CSC proliferation, in part through the NAD+ -dependent Sirtuin. Mechanistically, Notch acts in an unconventional manner to regulate RET by interacting with specific RC-I proteins containing electron-transporting Fe-S clusters and NAD(H)-binding sites. Genetic and pharmacological interference of Notch-mediated RET inhibited CSC growth in Drosophila brain tumor and mouse glioblastoma multiforme (GBM) models. Our results identify Notch as a regulator of RET and RET-induced NAD+ /NADH balance, a critical mechanism of metabolic reprogramming and a metabolic vulnerability of cancer that may be exploited for therapeutic purposes., Competing Interests: Declaration of interests B.L. is a scientific founder of Cerepeut, a member of Cerepeut’s scientific advisory board, and an inventor on patents related to CPT2008., (Copyright © 2021 Elsevier Inc. All rights reserved.)- Published
- 2022
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.