110,603 results on '"Richard, F."'
Search Results
2. Towards sub-millisecond latency real-time speech enhancement models on hearables
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Dementyev, Artem, Reddy, Chandan K. A., Wisdom, Scott, Chatlani, Navin, Hershey, John R., and Lyon, Richard F.
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Computer Science - Sound ,Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Audio and Speech Processing - Abstract
Low latency models are critical for real-time speech enhancement applications, such as hearing aids and hearables. However, the sub-millisecond latency space for resource-constrained hearables remains underexplored. We demonstrate speech enhancement using a computationally efficient minimum-phase FIR filter, enabling sample-by-sample processing to achieve mean algorithmic latency of 0.32 ms to 1.25 ms. With a single microphone, we observe a mean SI-SDRi of 4.1 dB. The approach shows generalization with a DNSMOS increase of 0.2 on unseen audio recordings. We use a lightweight LSTM-based model of 644k parameters to generate FIR taps. We benchmark that our system can run on low-power DSP with 388 MIPS and mean end-to-end latency of 3.35 ms. We provide a comparison with baseline low-latency spectral masking techniques. We hope this work will enable a better understanding of latency and can be used to improve the comfort and usability of hearables.
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- 2024
3. X-ray spectral performance of the Sony IMX290 CMOS sensor near Fano limit after a per-pixel gain calibration
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Schneider, Benjamin, Prigozhin, Gregory, Foster, Richard F., Bautz, Marshall W., Fu, Hope, Grant, Catherine E., Heine, Sarah, Juneau, Jill, LaMarr, Beverly, Limousin, Olivier, Lourie, Nathan, Malonis, Andrew, and Miller, Eric D.
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Physics - Instrumentation and Detectors ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
The advent of back-illuminated complementary metal-oxide-semiconductor (CMOS) sensors and their well-known advantages over charge-coupled devices (CCDs) make them an attractive technology for future X-ray missions. However, numerous challenges remain, including improving their depletion depth and identifying effective methods to calculate per-pixel gain conversion. We have tested a commercial Sony IMX290LLR CMOS sensor under X-ray light using an $^{55}$Fe radioactive source and collected X-ray photons for $\sim$15 consecutive days under stable conditions at regulated temperatures of 21{\deg}C and 26{\deg}C. At each temperature, the data set contained enough X-ray photons to produce one spectrum per pixel consisting only of single-pixel events. We determined the gain dispersion of its 2.1 million pixels using the peak fitting and the Energy Calibration by Correlation (ECC) methods. We measured a gain dispersion of 0.4\% at both temperatures and demonstrated the advantage of the ECC method in the case of spectra with low statistics. The energy resolution at 5.9 keV after the per-pixel gain correction is improved by $\gtrsim$10 eV for single-pixel and all event spectra, with single-pixel event energy resolution reaching $123.6\pm 0.2$ eV, close to the Fano limit of silicon sensors at room temperature. Finally, our long data acquisition demonstrated the excellent stability of the detector over more than 30 days under a flux of $10^4$ photons per second., Comment: 15 pages, 7 figures, accepted for publication in JATIS
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- 2024
4. Uniqueness for the Skorokhod problem in an orthant: critical cases
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Bass, Richard F. and Burdzy, Krzysztof
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Mathematics - Probability ,60J65 - Abstract
Consider the Skorokhod problem in the closed non-negative orthant: find a solution $(g(t),m(t))$ to \[ g(t)= f(t)+ Rm(t),\] where $f$ is a given continuous vector-valued function with $f(0)$ in the orthant, $R$ is a given $d\times d$ matrix with 1's along the diagonal, $g$ takes values in the orthant, and $m$ is a vector-valued function that starts at 0, each component of $m$ is non-decreasing and continuous, and for each $i$ the $i^{th}$ coordinate of $m$ increases only when the $i^{th}$ coordinate of $g$ is 0. The stochastic version of the Skorokhod problem replaces $f$ by the paths of Brownian motion. It is known that there exists a unique solution to the Skorokhod problem if the spectral radius of $|Q|$ is less than 1, where $Q=I-R$ and $|Q|$ is the matrix whose entries are the absolute values of the corresponding entries of $Q$. The first result of this paper shows pathwise uniqueness for the stochastic version of the Skorokhod problem holds if the spectral radius of $|Q|$ is equal to 1. The second result of this paper settles the remaining open cases for uniqueness for the deterministic version when the dimension $d$ is two.
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- 2024
5. Shower Separation in Five Dimensions for Highly Granular Calorimeters using Machine Learning
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Lai, S., Utehs, J., Wilhahn, A., Fouz, M. C., Bach, O., Brianne, E., Ebrahimi, A., Gadow, K., Göttlicher, P., Hartbrich, O., Heuchel, D., Irles, A., Krüger, K., Kvasnicka, J., Lu, S., Neubüser, C., Provenza, A., Reinecke, M., Sefkow, F., Schuwalow, S., De Silva, M., Sudo, Y., Tran, H. L., Liu, L., Masuda, R., Murata, T., Ootani, W., Seino, T., Takatsu, T., Tsuji, N., Pöschl, R., Richard, F., Zerwas, D., Hummer, F., Simon, F., Boudry, V., Brient, J-C., Nanni, J., Videau, H., Buhmann, E., Garutti, E., Huck, S., Kasieczka, G., Martens, S., Rolph, J., Wellhausen, J., Bilki, B., Northacker, D., Onel, Y., Emberger, L., and Graf, C.
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Physics - Instrumentation and Detectors - Abstract
To achieve state-of-the-art jet energy resolution for Particle Flow, sophisticated energy clustering algorithms must be developed that can fully exploit available information to separate energy deposits from charged and neutral particles. Three published neural network-based shower separation models were applied to simulation and experimental data to measure the performance of the highly granular CALICE Analogue Hadronic Calorimeter (AHCAL) technological prototype in distinguishing the energy deposited by a single charged and single neutral hadron for Particle Flow. The performance of models trained using only standard spatial and energy and charged track position information from an event was compared to models trained using timing information available from AHCAL, which is expected to improve sensitivity to shower development and, therefore, aid in clustering. Both simulation and experimental data were used to train and test the models and their performances were compared. The best-performing neural network achieved significantly superior event reconstruction when timing information was utilised in training for the case where the charged hadron had more energy than the neutral one, motivating temporally sensitive calorimeters. All models under test were observed to tend to allocate energy deposited by the more energetic of the two showers to the less energetic one. Similar shower reconstruction performance was observed for a model trained on simulation and applied to data and a model trained and applied to data.
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- 2024
6. Curved detectors for future X-ray astrophysics missions
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Miller, Eric D., Gregory, James A., Bautz, Marshall W., Clark, Harry R., Cooper, Michael, Donlon, Kevan, Foster, Richard F., Grant, Catherine E., Jensen, Mallory, LaMarr, Beverly, Lambert, Renee, Leitz, Christopher, Malonis, Andrew, Neak, Mo, Prigozhin, Gregory, Ryu, Kevin, Schneider, Benjamin, Warner, Keith, Young, Douglas J., and Zhang, William W.
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
Future X-ray astrophysics missions will survey large areas of the sky with unparalleled sensitivity, enabled by lightweight, high-resolution optics. These optics inherently produce curved focal surfaces with radii as small as 2 m, requiring a large area detector system that closely conforms to the curved focal surface. We have embarked on a project using a curved charge-coupled device (CCD) detector technology developed at MIT Lincoln Laboratory to provide large-format, curved detectors for such missions, improving performance and simplifying design. We present the current status of this work, which aims to curve back-illuminated, large-format (5 cm x 4 cm) CCDs to 2.5-m radius and confirm X-ray performance. We detail the design of fixtures and the curving process, and present intial results on curving bare silicon samples and monitor devices and characterizing the surface geometric accuracy. The tests meet our accuracy requirement of <5 $\mu$m RMS surface non-conformance for samples of similar thickness to the functional detectors. We finally show X-ray performance measurements of planar CCDs that will serve as a baseline to evaluate the curved detectors. The detectors exhibit low noise, good charge-transfer efficiency, and excellent, uniform spectroscopic performance, including in the important soft X-ray band., Comment: 18 pages, 13 figures, submitted to the Proceedings of SPIE, Astronomical Telescopes + Instrumentation 2024
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- 2024
7. $T_{cc}$ in the Diabatic Diquark Model: Effects of $D^*D$ Isospin
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Lebed, Richard F. and Martinez, Steven R.
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High Energy Physics - Phenomenology - Abstract
$T_{cc}^+$ is an isoscalar 4-quark state with mass lying barely below the $D^{*+} D^0$ threshold, and several times further below the $D^{*0} D^+$ threshold. It allows both di-meson molecular and elementary diquark-antidiquark $(cc)(\bar u \bar d)$ substructures. The diabatic generalization of the adiabatic approximation within the Born-Oppenheimer formalism rigorously incorporates the mixing of such elementary eigenstates with states corresponding to two-particle thresholds. We examine the separate influence of the two $D^* \! D$ isospin channels and find that the influence of $D^{*+} D^0$ is larger than that of $D^{*0} D^+$ but not overwhelmingly so, and that $T_{cc}^+$ contains an $O(10\%)$ $(cc)(\bar u \bar d)$ component. We then explore the variation of these results if the isospin breaking between the di-meson thresholds is varied, and also the sensitivity of our results to variation of the mixing-potential parameters., Comment: 12 pages, 4 figures
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- 2024
8. Significant challenges to the sustainability of the California coast considering climate change.
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Thorne, Karen M, MacDonald, Glen M, Chavez, Francisco P, Ambrose, Richard F, and Barnard, Patrick L
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Environmental Sciences ,Environmental Management ,Climate Action ,climate change ,coast ,management ,sea-level rise ,sustainability - Abstract
Climate change is an existential threat to the environmental and socioeconomic sustainability of the coastal zone and impacts will be complex and widespread. Evidence from California and across the United States shows that climate change is impacting coastal communities and challenging managers with a plethora of stressors already present. Widespread action could be taken that would sustain California's coastal ecosystems and communities. In this perspective, we highlight the main threat to coastal sustainability: the compound effects of episodic events amplified with ongoing climate change, which will present unprecedented challenges to the state. We present two key challenges for California's sustainability in the coastal zone: 1) accelerating sea-level rise combined with storm impacts, and 2) continued warming of the oceans and marine heatwaves. Cascading effects from these types of compounding events will occur within the context of an already stressed system that has experienced extensive alterations due to intensive development, resource extraction and harvesting, spatial containment, and other human use pressures. There are critical components that could be used to address these immediate concerns, including comanagement strategies that include diverse groups and organizations, strategic planning integrated across large areas, rapid implementation of solutions, and a cohesive and policy relevant research agenda for the California coast. Much of this has been started in the state, but the scale could be increased, and timelines accelerated. The ideas and information presented here are intended to help expand discussions to sharpen the focus on how to encourage sustainability of California's iconic coastal region.
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- 2024
9. Efficient motion of 90^{\circ} domain walls in Mn_{2}Au via pure optical torques
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Gavriloaea, Paul-Iulian, Ross, Jackson L., Freimuth, Frank, Mokrousov, Yuriy, Evans, Richard F. L., Chantrell, Roy, Chubykalo-Fesenko, Oksana, and Otxoa, Rubén M.
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Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
Discovering alternative ways to drive domain wall (DW) dynamics is crucial for advancing spintronic applications. Here we demonstrate via atomistic spin dynamics simulations that optical torques can efficiently drive 90^{\circ} DWs in the Mn2Au antiferromagnet but their spatial symmetry forbids the motion of 180^{\circ} walls. In the steady-state regime, the kinematics display special relativity signatures accessed for low laser intensities. At velocities higher than the magnonic limit, the DW enters a proliferation regime in which part of its relativistic energy is invested into the nucleation of novel magnetic textures. Our investigation contributes towards the fundamental understanding of opto-magnetic effects, supporting the development of next generation, all-optically controlled antiferromagnetic spintronics.
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- 2024
10. Pathwise non-uniqueness for Brownian motion in a quadrant with oblique reflection
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Bass, Richard F. and Burdzy, Krzysztof
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Mathematics - Probability ,60J65 - Abstract
Consider the Skorokhod equation in the closed first quadrant: \[ X_t=x_0+ B_t+\int_0^t{\bf v}(X_s)\, dL_s,\] where $B_t$ is standard 2-dimensional Brownian motion, $X_t$ takes values in the quadrant for all $t$, and $L_t$ is a process that starts at 0, is non-decreasing and continuous, and increases only at those times when $X_t$ is on the boundary of the quadrant. Suppose ${\bf v}$ equals $(-a_1,1)$ on the positive $x$ axis, equals $(1,-a_2)$ on the positive $y$ axis, and ${\bf v}(0)$ points into the closed first quadrant. Let $\theta_i=\arctan a_i$, $i=1,2$. It is known that there exists a solution to the Skorokhod equation for all $t\geq 0$ if and only if $\theta_1+\theta_2<\pi/2$ and moreover the solution is unique if $|a_1a_2|<1$. Suppose now that $\theta_1+\theta_2<\pi/2$, $\theta_2<0$, $\theta_1>-\theta_2>0$ and $|a_1a_2|>1$. We prove that for a large class of $(a_1,a_2)$, namely those for which \[\frac{\log|a_1|+\log|a_2|}{a_1+a_2}>\pi/2,\] pathwise uniqueness for the Skorokhod equation fails to hold.
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- 2024
11. The CARFAC v2 Cochlear Model in Matlab, NumPy, and JAX
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Lyon, Richard F., Schonberger, Rob, Slaney, Malcolm, Velimirović, Mihajlo, and Yu, Honglin
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Electrical Engineering and Systems Science - Audio and Speech Processing ,Computer Science - Sound ,Electrical Engineering and Systems Science - Signal Processing - Abstract
The open-source CARFAC (Cascade of Asymmetric Resonators with Fast-Acting Compression) cochlear model is upgraded to version 2, with improvements to the Matlab implementation, and with new Python/NumPy and JAX implementations -- but C++ version changes are still pending. One change addresses the DC (direct current, or zero frequency) quadratic distortion anomaly previously reported; another reduces the neural synchrony at high frequencies; the others have little or no noticeable effect in the default configuration. A new feature allows modeling a reduction of cochlear amplifier function, as a step toward a differentiable parameterized model of hearing impairment. In addition, the integration into the Auditory Model Toolbox (AMT) has been extensively improved, as the prior integration had bugs that made it unsuitable for including CARFAC in multi-model comparisons.
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- 2024
12. Diabatic Dynamical Diquark Bound States: Mass Corrections and Widths
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Lebed, Richard F. and Martinez, Steven R.
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High Energy Physics - Phenomenology - Abstract
Using the diabatic formalism, which generalizes the adiabatic approximation in the Born-Oppenheimer formalism, we apply well-known Hamiltonian methods to calculate the effect of open di-meson thresholds that lie well below the mass of elementary $c\bar c q\bar q^\prime$, $c\bar c s\bar s$, and $c \bar c q \bar s$ tetraquark bound states. We compute the resulting mass shifts for these states, as well as their decay widths to the corresponding meson pairs. Each mass eigenstate, originally produced using a bound-state approximation under the diabatic formalism, consists of an admixture of a compact diquark-antidiquark configuration (an eigenstate of the original dynamical diquark model) with an extended di-meson configuration induced by the nearest threshold. We compare our results with those from our recent work that employs a scattering formalism, and find a great deal of agreement, but also comment upon interesting discrepancies between the two approaches., Comment: 8 pages, 1 figure, 4 tables
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- 2024
13. Ultra-high spin emission from antiferromagnetic FeRh
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Hamara, Dominik, Strungaru, Mara, Massey, Jamie, Remy, Quentin, Antonio, Guillermo Nava, Santos, Obed Alves, Hehn, Michel, Evans, Richard F. L., Chantrell, Roy W., Mangin, Stéphane, Marrows, Christopher H., Barker, Joseph, and Ciccarelli, Chiara
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Condensed Matter - Materials Science - Abstract
An antiferromagnet emits spin currents when time-reversal symmetry is broken. This is typically achieved by applying an external magnetic field below and above the spin-flop transition or by optical pumping. In this work we apply optical pump-THz emission spectroscopy to study picosecond spin pumping from metallic FeRh as a function of temperature. Intriguingly we find that in the low-temperature antiferromagnetic phase the laser pulse induces a large and coherent spin pumping, while not crossing into the ferromagnetic phase. With temperature and magnetic field dependent measurements combined with atomistic spin dynamics simulations we show that the antiferromagnetic spin-lattice is destabilised by the combined action of optical pumping and picosecond spin-biasing by the conduction electron population, which results in spin accumulation. We propose that the amplitude of the effect is inherent to the nature of FeRh, particularly the Rh atoms and their high spin susceptibility. We believe that the principles shown here could be used to produce more effective spin current emitters. Our results also corroborate the work of others showing that the magnetic phase transition begins on a very fast picosecond timescale, but this timescale is often hidden by measurements which are confounded by the slower domain dynamics.
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- 2024
14. Poles and Poltergeists in $e^+ e^- \to D \bar D$ Data
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Hüsken, Nils, Lebed, Richard F., Mitchell, Ryan E., Swanson, Eric S., Wang, Ya-Qian, and Yuan, Chang-Zheng
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High Energy Physics - Phenomenology - Abstract
A recent report of $e^+ e^- \to D\bar D$ events by the BESIII Collaboration suggests the presence of a structure $R$ at 3900~MeV\@. We argue that this structure, called $G(3900)$ in the past, is not in fact due to a new $c\bar c$ resonance, but rather naturally emerges as a threshold enhancement due to the opening of the $D^*\bar D$ channel. We further find that the appearance of this structure does not require suppression because of a radial node in the $\psi(4040)$ wave function, although a node improves fit quality. The measured $e^+ e^-$ coupling of $\psi(4040)$ is found to be substantially smaller than previously estimated. In addition, we report new corrections to the measured cross section $\sigma(e^+ e^- \to D\bar D)$ at energies near $\psi(3770)$., Comment: Discussion of previous work updated. 9 pages, 8 figures
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- 2024
15. Probing gauge-Higgs Unification models at the ILC with quark-antiquark forward-backward asymmetry at center-of-mass energies above the Z mass
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Irles, A., Márquez, J. P., Pöschl, R., Richard, F., Saibel, A., Yamamoto, H., and Yamatsu, N.
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High Energy Physics - Phenomenology ,High Energy Physics - Experiment - Abstract
The International Linear Collider (ILC) will allow the precise study of $e^{-}e^{+}\rightarrow q\bar{q}$ interactions at different center-of-mass energies from the $Z$-pole to 1 TeV. In this paper, we discuss the experimental prospects for measuring differential observables in $e^{-}e^{+}\rightarrow b\bar{b}$ and $e^{-}e^{+}\rightarrow c\bar{c}$ at the ILC baseline energies, 250 and 500 GeV. The study is based on full simulation and reconstruction of the International Large Detector (ILD) concept. Two gauge-Higgs unification models predicting new high-mass resonances beyond the Standard Model are discussed. These models predict sizable deviations of the forward-backward observables at the ILC running above the $Z$ mass and with longitudinally polarized electron and positron beams. The ability of the ILC to probe these models via high-precision measurements of the forward-backward asymmetry is discussed. Alternative scenarios at other energies and beam polarization schemes are also discussed, extrapolating the estimated uncertainties from the two baseline scenarios.
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- 2024
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16. Software Compensation for Highly Granular Calorimeters using Machine Learning
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Lai, S., Utehs, J., Wilhahn, A., Bach, O., Brianne, E., Ebrahimi, A., Gadow, K., Göttlicher, P., Hartbrich, O., Heuchel, D., Irles, A., Krüger, K., Kvasnicka, J., Lu, S., Neubüser, C., Provenza, A., Reinecke, M., Sefkow, F., Schuwalow, S., De Silva, M., Sudo, Y., Tran, H. L., Buhmann, E., Garutti, E., Huck, S., Kasieczka, G., Martens, S., Rolph, J., Wellhausen, J., Blazey, G. C., Dyshkant, A., Francis, K., Zutshi, V., Bilki, B., Northacker, D., Onel, Y., Hummer, F., Simon, F., Kawagoe, K., Onoe, T., Suehara, T., Tsumura, S., Yoshioka, T., Fouz, M. C., Emberger, L., Graf, C., Wagner, M., Pöschl, R., Richard, F., Zerwas, D., Boudry, V., Brient, J-C., Nanni, J., Videau, H., Liu, L., Masuda, R., Murata, T., Ootani, W., Takatsu, T., Tsuji, N., Chadeeva, M., Danilov, M., Korpachev, S., and Rusinov, V.
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Physics - Instrumentation and Detectors - Abstract
A neural network for software compensation was developed for the highly granular CALICE Analogue Hadronic Calorimeter (AHCAL). The neural network uses spatial and temporal event information from the AHCAL and energy information, which is expected to improve sensitivity to shower development and the neutron fraction of the hadron shower. The neural network method produced a depth-dependent energy weighting and a time-dependent threshold for enhancing energy deposits consistent with the timescale of evaporation neutrons. Additionally, it was observed to learn an energy-weighting indicative of longitudinal leakage correction. In addition, the method produced a linear detector response and outperformed a published control method regarding resolution for every particle energy studied.
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- 2024
17. Editorial: Identifying Barriers for Behavior Scientists Working on Social Issues
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Cihon, Traci M., Mattaini, Mark A., Rakos, Richard F., and Rehfeldt, Ruth Anne
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- 2024
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18. A Cost-Utility Analysis of Ferric Derisomaltose Versus Ferric Carboxymaltose in Patients with Iron Deficiency Anemia in China
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Zhang, Fengkui, Shen, Aizong, Ahmed, Waqas, and Pollock, Richard F.
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- 2024
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19. The Impact of Unrelated Future Medical Costs on Economic Evaluation Outcomes for Different Models of Diabetes
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Zhao, Ting, Tew, Michelle, Feenstra, Talitha, van Baal, Pieter, Willis, Michael, Valentine, William J., Clarke, Philip M., Hunt, Barnaby, Altunkaya, James, Tran-Duy, An, Pollock, Richard F., Malkin, Samuel J. P., Nilsson, Andreas, McEwan, Phil, Foos, Volker, Leal, Jose, Huang, Elbert S., Laiteerapong, Neda, Lamotte, Mark, Smolen, Harry, Quan, Jianchao, Martins, Luís, Ramos, Mafalda, and Palmer, Andrew J.
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- 2024
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20. Evolution of Initial Treatment for Desmoid Tumors
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Bartholomew, Alex J., Rhodin, Kristen E., Noteware, Laura, Moris, Dimitrios, Kanu, Elishama, Masoud, Sabran, Howell, T. Clark, Burner, Danielle, Kim, Charles Y., Nussbaum, Daniel P., Zani, Sabino, Lidsky, Michael E., Allen, Peter J., Riedel, Richard F., and Blazer, III, Dan G.
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- 2024
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21. Association of adverse events and quality of life in patients with unresectable hepatocellular carcinoma
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Agirrezabal, Ion, Pollock, Richard F., Carion, Phuong Lien, Shergill, Suki, Brennan, Victoria K., Pereira, Helena, Chatellier, Gilles, and Vilgrain, Valérie
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- 2024
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22. The Role of Complement C1qa in Experimental Intracerebral Hemorrhage
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Fu, Xiongjie, Ye, Fenghui, Wan, Yingfeng, Xi, Guohua, Hua, Ya, and Keep, Richard F.
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- 2024
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23. Three Recent Books on Social Media Manipulation, Misunderstanding Science, and Caring about Future People: Opportunities for Behavior Analysts
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Alavosius, Mark P., Rakos, Richard F., and Krispin, Jonathan V.
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- 2024
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24. Mitochondrial DNA copy number associated dementia risk by somatic mutations and frailty
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Tian, Qu, Zweibaum, David A., Qian, Yong, Oppong, Richard F., Pilling, Luke C., Casanova, Francesco, Atkins, Janice L., Melzer, David, Ding, Jun, and Ferrucci, Luigi
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- 2024
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25. Contributions of network structure, chemoarchitecture and diagnostic categories to transitions between cognitive topographies
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Luppi, Andrea I., Singleton, S. Parker, Hansen, Justine Y., Jamison, Keith W., Bzdok, Danilo, Kuceyeski, Amy, Betzel, Richard F., and Misic, Bratislav
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- 2024
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26. Lightness constancy in reality, in virtual reality, and on flat-panel displays
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Patel, Khushbu Y., Wilcox, Laurie M., Maloney, Laurence T., Ehinger, Krista A., Patel, Jaykishan Y., Wiedenmann, Emma, and Murray, Richard F.
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- 2024
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27. A demonstration of the effect of fringe-rate filtering in the Hydrogen Epoch of Reionization Array delay power spectrum pipeline
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Garsden, Hugh, Bull, Philip, Wilensky, Mike, Abdurashidova, Zuhra, Adams, Tyrone, Aguirre, James E., Alexander, Paul, Ali, Zaki S., Baartman, Rushelle, Balfour, Yanga, Beardsley, Adam P., Berkhout, Lindsay M., Bernardi, Gianni, Billings, Tashalee S., Bowman, Judd D., Bradley, Richard F., Burba, Jacob, Carey, Steven, Carilli, Chris L., Chen, Kai-Feng, Cheng, Carina, Choudhuri, Samir, DeBoer, David R., Acedo, Eloy de Lera, Dexter, Matt, Dillon, Joshua S., Dynes, Scott, Eksteen, Nico, Ely, John, Ewall-Wice, Aaron, Fagnoni, Nicolas, Fritz, Randall, Furlanetto, Steven R., Gale-Sides, Kingsley, Gehlot, Bharat Kumar, Ghosh, Abhik, Glendenning, Brian, Gorce, Adelie, Gorthi, Deepthi, Greig, Bradley, Grobbelaar, Jasper, Halday, Ziyaad, Hazelton, Bryna J., Hewitt, Jacqueline N., Hickish, Jack, Huang, Tian, Jacobs, Daniel C., Josaitis, Alec, Julius, Austin, Kariseb, MacCalvin, Kern, Nicholas S., Kerrigan, Joshua, Kim, Honggeun, Kittiwisit, Piyanat, Kohn, Saul A., Kolopanis, Matthew, Lanman, Adam, La Plante, Paul, Liu, Adrian, Loots, Anita, Ma, Yin-Zhe, MacMahon, David H. E., Malan, Lourence, Malgas, Cresshim, Malgas, Keith, Marero, Bradley, Martinot, Zachary E., Mesinger, Andrei, Molewa, Mathakane, Morales, Miguel F., Mosiane, Tshegofalang, Murray, Steven G., Neben, Abraham R., Nikolic, Bojan, Nunhokee, Chuneeta Devi, Nuwegeld, Hans, Parsons, Aaron R., Pascua, Robert, Patra, Nipanjana, Pieterse, Samantha, Qin, Yuxiang, Rath, Eleanor, Razavi-Ghods, Nima, Riley, Daniel, Robnett, James, Rosie, Kathryn, Santos, Mario G., Sims, Peter, Singh, Saurabh, Storer, Dara, Swarts, Hilton, Tan, Jianrong, Thyagarajan, Nithyanandan, van Wyngaarden, Pieter, Williams, Peter K. G., Xu, Zhilei, and Zheng, Haoxuan
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Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Radio interferometers targeting the 21cm brightness temperature fluctuations at high redshift are subject to systematic effects that operate over a range of different timescales. These can be isolated by designing appropriate Fourier filters that operate in fringe-rate (FR) space, the Fourier pair of local sidereal time (LST). Applications of FR filtering include separating effects that are correlated with the rotating sky vs. those relative to the ground, down-weighting emission in the primary beam sidelobes, and suppressing noise. FR filtering causes the noise contributions to the visibility data to become correlated in time however, making interpretation of subsequent averaging and error estimation steps more subtle. In this paper, we describe fringe rate filters that are implemented using discrete prolate spheroidal sequences, and designed for two different purposes -- beam sidelobe/horizon suppression (the `mainlobe' filter), and ground-locked systematics removal (the `notch' filter). We apply these to simulated data, and study how their properties affect visibilities and power spectra generated from the simulations. Included is an introduction to fringe-rate filtering and a demonstration of fringe-rate filters applied to simple situations to aid understanding., Comment: 21 pages, 18 figures, submitted to Monthly Notices of the Royal Astronomical Society
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- 2024
28. Decoupled few-femtosecond phase transitions in vanadium dioxide
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Brahms, Christian, Zhang, Lin, Shen, Xiao, Bhattacharya, Utso, Recasens, Maria, Osmond, Johann, Grass, Tobias, Chhajlany, Ravindra W., Hallman, Kent A., Haglund, Richard F., Pantelides, Sokrates T., Lewenstein, Maciej, Travers, John C., and Johnson, Allan S.
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Condensed Matter - Strongly Correlated Electrons ,Physics - Optics - Abstract
The nature of the insulator-to-metal phase transition in vanadium dioxide (VO2) is one of the longest-standing problems in condensed-matter physics. Ultrafast spectroscopy has long promised to determine whether the transition is primarily driven by the electronic or structural degree of freedom, but measurements to date have been stymied by their sensitivity to only one of these components and/or their limited temporal resolution. Here we use ultra-broadband few-femtosecond pump-probe spectroscopy to resolve the electronic and structural phase transitions in VO2 at their fundamental time scales. We find that the system transforms into a bad-metallic phase within 10 fs after photoexcitation, but requires another 100 fs to complete the transition, during which we observe electronic oscillations and a partial re-opening of the bandgap, signalling a transient semi-metallic state. Comparisons with tensor-network simulations and density-functional theory calculations show these features originate from oscillations around the equilibrium high-symmetry atomic positions during an unprecedentedly fast structural transition, in which the vanadium dimers separate and untwist with two different timescales. Our results resolve the complete structural and electronic nature of the light-induced phase transition in VO2 and establish ultra-broadband few-femtosecond spectroscopy as a powerful new tool for studying quantum materials out of equilibrium., Comment: 20 pages, 12 figures
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- 2024
29. Atomistic calculation of the f0 attempt frequency in Fe3O4 magnetite nanoparticles
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Moreno, Roberto, Jenkins, Sarah, Williams, Wyn, and Evans, Richard F. L.
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Condensed Matter - Materials Science - Abstract
The Arrhenius law predicts the transition time between equilibrium states in physical systems due to thermal activation, with broad applications in material science, magnetic hyperthermia and paleomagnetism where it is used to estimate the transition time and thermal stability of assemblies of magnetic nanoparticles. Magnetite is a material of great importance in paleomagnetic studies and magnetic hyperthermia but existing estimates of the attempt frequency $f_0$ vary by several orders of magnitude in the range $10^7-10^{13}$ Hz, leading to significant uncertainty in their relaxation rate. Here we present a dynamical method enabling full parameterization of the Arrhenius-N\'eel law using atomistic spin dynamics. We determine the temperature and volume dependence of the attempt frequency of magnetite nanoparticles with cubic anisotropy and find a value of $f_0 = 0.562 \pm 0.059$ GHz at room temperature. For particles with enhanced anisotropy we find a significant increase in the attempt frequency and a strong temperature dependence suggesting an important role of anisotropy. The method is applicable to a wide range of dynamical systems where different states can be clearly identified and enables robust estimates of domain state stabilities, with particular importance in the rapidly developing field of micromagnetic analysis of paleomagnetic recordings where samples can be numerically reconstructed to provide a better understanding of geomagnetic recording fidelity over geological time scales.
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- 2024
30. Hydrogen Epoch of Reionization Array (HERA) Phase II Deployment and Commissioning
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Berkhout, Lindsay M., Jacobs, Daniel C., Abdurashidova, Zuhra, Adams, Tyrone, Aguirre, James E., Alexander, Paul, Ali, Zaki S., Baartman, Rushelle, Balfour, Yanga, Beardsley, Adam P., Bernardi, Gianni, Billings, Tashalee S., Bowman, Judd D., Bradley, Richard F., Bull, Philip, Burba, Jacob, Carey, Steven, Carilli, Chris L., Chen, Kai-Feng, Cheng, Carina, Choudhuri, Samir, DeBoer, David R., Acedo, Eloy de Lera, Dexter, Matt, Dillon, Joshua S., Dynes, Scott, Eksteen, Nico, Ely, John, Ewall-Wice, Aaron, Fagnoni, Nicolas, Fritz, Randall, Furlanetto, Steven R., Gale-Sides, Kingsley, Garsden, Hugh, Gehlot, Bharat Kumar, Ghosh, Abhik, Glendenning, Brian, Gorce, Adelie, Gorthi, Deepthi, Greig, Bradley, Grobbelaar, Jasper, Halday, Ziyaad, Hazelton, Bryna J., Hewitt, Jacqueline N., Hickish, Jack, Huang, Tian, Josaitis, Alec, Julius, Austin, Kariseb, MacCalvin, Kern, Nicholas S., Kerrigan, Joshua, Kim, Honggeun, Kittiwisit, Piyanat, Kohn, Saul A., Kolopanis, Matthew, Lanman, Adam, La Plante, Paul, Liu, Adrian, Loots, Anita, Ma, Yin-Zhe, MacMahon, David Harold Edward, Malan, Lourence, Malgas, Cresshim, Malgas, Keith, Marero, Bradley, Martinot, Zachary E., Mesinger, Andrei, Molewa, Mathakane, Morales, Miguel F., Mosiane, Tshegofalang, Murray, Steven G., Neben, Abraham R., Nikolic, Bojan, Nunhokee, Chuneeta Devi, Nuwegeld, Hans, Parsons, Aaron R., Pascua, Robert, Patra, Nipanjana, Pieterse, Samantha, Qin, Yuxiang, Rath, Eleanor, Razavi-Ghods, Nima, Riley, Daniel, Robnett, James, Rosie, Kathryn, Santos, Mario G., Sims, Peter, Singh, Saurabh, Storer, Dara, Swarts, Hilton, Tan, Jianrong, Thyagarajan, Nithyanandan, van Wyngaarden, Pieter, Williams, Peter K. G., Zheng, Haoxuan, and Xu, Zhilei
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
This paper presents the design and deployment of the Hydrogen Epoch of Reionization Array (HERA) phase II system. HERA is designed as a staged experiment targeting 21 cm emission measurements of the Epoch of Reionization. First results from the phase I array are published as of early 2022, and deployment of the phase II system is nearing completion. We describe the design of the phase II system and discuss progress on commissioning and future upgrades. As HERA is a designated Square Kilometer Array (SKA) pathfinder instrument, we also show a number of "case studies" that investigate systematics seen while commissioning the phase II system, which may be of use in the design and operation of future arrays. Common pathologies are likely to manifest in similar ways across instruments, and many of these sources of contamination can be mitigated once the source is identified.
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- 2024
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31. Climate drivers and human impacts shape 35‐year trends of coastal wetland health and composition in an urban region
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Doughty, Cheryl L, Gu, Hanfeng, Ambrose, Richard F, Stein, Eric D, Sloane, Evyan Borgnis, Martinez, Meghan, and Cavanaugh, Kyle C
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Climate Change Impacts and Adaptation ,Environmental Sciences ,Climate Action ,climate change ,coastal wetland ,Google Earth Engine ,hierarchical generalized additive models ,human impacts ,Landsat ,restoration monitoring ,salt marsh ,wetland restoration ,Ecological Applications ,Ecology ,Zoology ,Ecological applications - Abstract
Abstract: The future of coastal wetlands will depend on the combined effects of climate change and human impacts from urbanization and coastal management. Disentangling the effects of these factors is difficult, but satellite imagery archives provide a way to track biological and physical changes in wetlands over recent decades to reveal how coastal wetlands have been changing in response to climate and human drivers. In this study, we used Landsat to monitor the conditions of 32 coastal wetlands in southern California from 1984 to 2019 and identify environmental and human drivers of these trends. Wetland conditions were characterized by vegetation greenness, using the normalized difference vegetation index (NDVI), and by habitat composition, derived from areal estimates of wetland and subtidal habitats. Overall, wetlands displayed three types of long‐term response: greening and gaining wetland (10), greening and losing wetland (16), and browning and losing wetland (6). Regional environmental drivers with overall positive effects on wetland NDVI were sea level, wave height, and precipitation, whereas stream discharge, vapor pressure deficit, and air temperature had negative or nonlinear effects. Wetland area change was primarily correlated with sea level, but response was highly contextual among sites. Negative trends in wetland NDVI and area were more common in larger sites with low elevations and in sites with open inlets. Restoration had mixed effects, with only half of the restored sites showing positive changes in NDVI and wetland area post‐restoration. The important work of managing and restoring urban coastal wetlands is complicated by variability and context and requires us to account for the influence of humans and climate as we build a regional understanding of historic, present, and future wetland health.
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- 2024
32. Topological magnon gap engineering in van der Waals CrI$_3$ ferromagnets
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Brehm, Verena, Sobieszczyk, Pawel, Kløgetvedt, Jostein, Evans, Richard F. L., Santos, Elton J. G., and Qaiumzadeh, Alireza
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Condensed Matter - Materials Science - Abstract
The microscopic origin of the topological magnon band gap in CrI$_3$ ferromagnets has been a subject of controversy for years since two main models with distinct characteristics, i.e., Dzyaloshinskii-Moriya (DM) and Kitaev, provided possible explanations with different outcome implications. Here we investigate the angular magnetic field dependence of the magnon gap of CrI$_3$ by elucidating what main contributions play a major role in its generation. We implement stochastic atomistic spin dynamics simulations to compare the impact of these two spin interactions on the magnon spectra. We observe three distinct magnetic field dependencies between these two gap opening mechanisms. First, we demonstrate that the Kitaev-induced magnon gap is influenced by both the direction and amplitude of the applied magnetic field, while the DM-induced gap is solely affected by the magnetic field direction. Second, the position of the Dirac cones within the Kitaev-induced magnon gap shifts in response to changes in the magnetic field direction, whereas they remain unaffected by the magnetic field direction in the DM-induced gap scenario. Third, we find a direct-indirect magnon band-gap transition in the Kitaev model by varying the applied magnetic field direction. These differences may distinguish the origin of topological magnon gaps in CrI$_3$ and other van der Waals magnetic layers. Our findings pave the way for exploration and engineering topological gaps in van der Waals materials.
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- 2023
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33. matvis: A matrix-based visibility simulator for fast forward modelling of many-element 21 cm arrays
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Kittiwisit, Piyanat, Murray, Steven G., Garsden, Hugh, Bull, Philip, Cain, Christopher, Parsons, Aaron R., Sipple, Jackson, Abdurashidova, Zara, Adams, Tyrone, Aguirre, James E., Alexander, Paul, Ali, Zaki S., Baartman, Rushelle, Balfour, Yanga, Beardsley, Adam P., Berkhout, Lindsay M., Bernardi, Gianni, Billings, Tashalee S., Bowman, Judd D., Bradley, Richard F., Burba, Jacob, Carey, Steven, Carilli, Chris L., Chen, Kai-Feng, Cheng, Carina, Choudhuri, Samir, DeBoer, David R., Acedo, Eloy de Lera, Dexter, Matt, Dillon, Joshua S., Dynes, Scott, Eksteen, Nico, Ely, John, Ewall-Wice, Aaron, Fagnoni, Nicolas, Fritz, Randall, Furlanetto, Steven R., Gale-Sides, Kingsley, Gehlot, Bharat Kumar, Ghosh, Abhik, Glendenning, Brian, Gorce, Adelie, Gorthi, Deepthi, Greig, Bradley, Grobbelaar, Jasper, Halday, Ziyaad, Hazelton, Bryna J., Hewitt, Jacqueline N., Hickish, Jack, Huang, Tian, Jacobs, Daniel C., Josaitis, Alec, Julius, Austin, Kariseb, MacCalvin, Kern, Nicholas S., Kerrigan, Joshua, Kim, Honggeun, Kohn, Saul A., Kolopanis, Matthew, Lanman, Adam, La Plante, Paul, Liu, Adrian, Loots, Anita, Ma, Yin-Zhe, MacMahon, David H. E., Malan, Lourence, Malgas, Cresshim, Malgas, Keith, Marero, Bradley, Martinot, Zachary E., Mesinger, Andrei, Molewa, Mathakane, Morales, Miguel F., Mosiane, Tshegofalang, Neben, Abraham R., Nikolic, Bojan, Nunhokee, Chuneeta Devi, Nuwegeld, Hans, Pascua, Robert, Patra, Nipanjana, Pieterse, Samantha, Qin, Yuxiang, Rath, Eleanor, Razavi-Ghods, Nima, Riley, Daniel, Robnett, James, Rosie, Kathryn, Santos, Mario G., Sims, Peter, Singh, Saurabh, Storer, Dara, Swarts, Hilton, Tan, Jianrong, Thyagarajan, Nithyanandan, van Wyngaarden, Pieter, Williams, Peter K. G., Xu, Zhilei, and Zheng, Haoxuan
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Detection of the faint 21 cm line emission from the Cosmic Dawn and Epoch of Reionisation will require not only exquisite control over instrumental calibration and systematics to achieve the necessary dynamic range of observations but also validation of analysis techniques to demonstrate their statistical properties and signal loss characteristics. A key ingredient in achieving this is the ability to perform high-fidelity simulations of the kinds of data that are produced by the large, many-element, radio interferometric arrays that have been purpose-built for these studies. The large scale of these arrays presents a computational challenge, as one must simulate a detailed sky and instrumental model across many hundreds of frequency channels, thousands of time samples, and tens of thousands of baselines for arrays with hundreds of antennas. In this paper, we present a fast matrix-based method for simulating radio interferometric measurements (visibilities) at the necessary scale. We achieve this through judicious use of primary beam interpolation, fast approximations for coordinate transforms, and a vectorised outer product to expand per-antenna quantities to per-baseline visibilities, coupled with standard parallelisation techniques. We validate the results of this method, implemented in the publicly-available matvis code, against a high-precision reference simulator, and explore its computational scaling on a variety of problems., Comment: 25 pages, 20 figures, submitted to RAS Techniques and Instruments, matvis is publicly available at https://github.com/HERA-Team/matvis
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- 2023
34. Bayesian estimation of cross-coupling and reflection systematics in 21cm array visibility data
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Murphy, Geoff G., Bull, Philip, Santos, Mario G., Abdurashidova, Zara, Adams, Tyrone, Aguirre, James E., Alexander, Paul, Ali, Zaki S., Baartman, Rushelle, Balfour, Yanga, Beardsley, Adam P., Bernardi, Gianni, Billings, Tashalee, Bowman, Judd D., Bradley, Richard F., Burba, Jacob, Cain, Christopher, Carey, Steven, Carilli, Chris L., Cheng, Carina, DeBoer, David R., Acedo, Eloy de Lera, Dexter, Matt, Dillon, Joshua S., Eksteen, Nico, Ely, John, Ewall-Wice, Aaron, Fagnoni, Nicolas, Fritz, Randall, Furlanetto, Steven R., Gale-Sides, Kingsley, Glendenning, Brian, Gorthi, Deepthi, Greig, Bradley, Grobbelaar, Jasper, Halday, Ziyaad, Hazelton, Bryna J., Hewitt, Jacqueline N., Hickish, Jack, Jacobs, Daniel C., Julius, Austin, Kariseb, MacCalvin, Kern, Nicholas S., Kerrigan, Joshua, Kittiwisit, Piyanat, Kohn, Saul A., Kolopanis, Matthew, Lanman, Adam, La Plante, Paul, Liu, Adrian, Loots, Anita, MacMahon, David Harold Edward, Malan, Lourence, Malgas, Cresshim, Malgas, Keith, Marero, Bradley, Martinot, Zachary E., Mesinger, Andrei, Molewa, Mathakane, Morales, Miguel F., Mosiane, Tshegofalang, Murray, Steven G., Neben, Abraham R., Nikolic, Bojan, Nuwegeld, Hans, Parsons, Aaron R., Patra, Nipanjana, Pieterse, Samantha, Razavi-Ghods, Nima, Robnett, James, Rosie, Kathryn, Sims, Peter, Sipple, Jackson, Smith, Craig, Swarts, Hilton, Thyagarajan, Nithyanandan, van Wyngaarden, Pieter, Williams, Peter K. G., and Zheng, Haoxuan
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Observations with radio arrays that target the 21-cm signal originating from the early Universe suffer from a variety of systematic effects. An important class of these are reflections and spurious couplings between antennas. We apply a Hamiltonian Monte Carlo sampler to the modelling and mitigation of these systematics in simulated Hydrogen Epoch of Reionisation Array (HERA) data. This method allows us to form statistical uncertainty estimates for both our models and the recovered visibilities, which is an important ingredient in establishing robust upper limits on the Epoch of Reionisation (EoR) power spectrum. In cases where the noise is large compared to the EoR signal, this approach can constrain the systematics well enough to mitigate them down to the noise level for both systematics studied. Where the noise is smaller than the EoR, our modelling can mitigate the majority of the reflections with there being only a minor level of residual systematics, while cross-coupling sees essentially complete mitigation. Our approach performs similarly to existing filtering/fitting techniques used in the HERA pipeline, but with the added benefit of rigorously propagating uncertainties. In all cases it does not significantly attenuate the underlying signal., Comment: 19 pages, 14 figures, submitted to MNRAS
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- 2023
35. Integrin signalling in joint development, homeostasis and osteoarthritis
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Miao, Michael Z., Lee, Janice S., Yamada, Kenneth M., and Loeser, Richard F.
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- 2024
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36. Editorial: Integrating Culturo-Behavior Science and Contextual Behavior Science (CBS2)
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Cihon, Traci M., Rehfeldt, Ruth Anne, Rakos, Richard F., and Mattaini, Mark A.
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- 2024
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37. Complement Inhibition Reduces Early Erythrolysis, Attenuates Brain Injury, Hydrocephalus, and Iron Accumulation after Intraventricular Hemorrhage in Aged Rats
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Zhang, Tianjie, Xia, Fan, Wan, Yingfeng, Xi, Guohua, Ya, Hua, and Keep, Richard F.
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- 2024
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38. What makes a good modeling research contribution?
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Paige, Richard F. and Cabot, Jordi
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- 2024
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39. Long-Term Follow-Up of Cerebral Aneurysms Completely Occluded at 6 Months After Intervention with the Woven EndoBridge (WEB) Device: a Retrospective Multicenter Observational Study
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El Naamani, Kareem, Mastorakos, Panagiotis, Adeeb, Nimer, Lan, Mathews, Castiglione, James, Khanna, Omaditya, Diestro, Jose Danilo Bengzon, McLellan, Rachel M., Dibas, Mahmoud, Vranic, Justin E., Aslan, Assala, Cuellar-Saenz, Hugo H., Guenego, Adrien, Carnevale, Joseph, Saliou, Guillaume, Ulfert, Christian, Möhlenbruch, Markus, Foreman, Paul M., Vachhani, Jay A., Hafeez, Muhammad U., Waqas, Muhammad, Tutino, Vincent M., Rabinov, James D., Ren, Yifan, Michelozzi, Caterina, Spears, Julian, Panni, Pietro, Griessenauer, Christoph J., Asadi, Hamed, Regenhardt, Robert W., Stapleton, Christopher J., Ghozy, Sherief, Siddiqui, Adnan, Patel, Nirav J., Kan, Peter, Boddu, Srikanth, Knopman, Jared, Aziz-Sultan, Mohammad A., Zanaty, Mario, Ghosh, Ritam, Abbas, Rawad, Amllay, Abdelaziz, Tjoumakaris, Stavropoula I., Gooch, Michael R., Cancelliere, Nicole M., Herial, Nabeel A., Rosenwasser, Robert H., Zarzour, Hekmat, Schmidt, Richard F., Pereira, Vitor Mendes, Patel, Aman B., Jabbour, Pascal, and Dmytriw, Adam A.
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- 2024
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40. Direct Optimal Mapping Image Power Spectrum and its Window Functions
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Xu, Zhilei, Kim, Honggeun, Hewitt, Jacqueline N., Chen, Kai-Feng, Kern, Nicholas S., Rath, Eleanor, Byrne, Ruby, Gorce, Adélie, Pascua, Robert, Martinot, Zachary E., Dillon, Joshua S., Hazelton, Bryna J., Liu, Adrian, Morales, Miguel F., Abdurashidova, Zara, Adams, Tyrone, Aguirre, James E., Alexander, Paul, Ali, Zaki S., Baartman, Rushelle, Balfour, Yanga, Beardsley, Adam P., Bernardi, Gianni, Billings, Tashalee S., Bowman, Judd D., Bradley, Richard F., Bull, Philip, Burba, Jacob, Carey, Steven, Carilli, Chris L., Cheng, Carina, DeBoer, David R., Acedo, Eloy de Lera, Dexter, Matt, Eksteen, Nico, Ely, John, Ewall-Wice, Aaron, Fagnoni, Nicolas, Fritz, Randall, Furlanetto, Steven R., Gale-Sides, Kingsley, Glendenning, Brian, Gorthi, Deepthi, Greig, Bradley, Grobbelaar, Jasper, Halday, Ziyaad, Hickish, Jack, Jacobs, Daniel C., Julius, Austin, Kariseb, MacCalvin, Kerrigan, Joshua, Kittiwisit, Piyanat, Kohn, Saul A., Kolopanis, Matthew, Lanman, Adam, La Plante, Paul, Loots, Anita, MacMahon, David Harold Edward, Malan, Lourence, Malgas, Cresshim, Malgas, Keith, Marero, Bradley, Mesinger, Andrei, Molewa, Mathakane, Mosiane, Tshegofalang, Murray, Steven G., Neben, Abraham R., Nikolic, Bojan, Nuwegeld, Hans, Parsons, Aaron R., Patra, Nipanjana, Pieterse, Samantha, Razavi-Ghods, Nima, Robnett, James, Rosie, Kathryn, Sims, Peter, Smith, Craig, Swarts, Hilton, Thyagarajan, Nithyanandan, van Wyngaarden, Pieter, Williams, Peter K. G., and Zheng, Haoxuan
- Subjects
Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
The key to detecting neutral hydrogen during the epoch of reionization (EoR) is to separate the cosmological signal from the dominating foreground radiation. We developed direct optimal mapping (DOM) to map interferometric visibilities; it contains only linear operations, with full knowledge of point spread functions from visibilities to images. Here, we demonstrate a fast Fourier transform-based image power spectrum and its window functions computed from the DOM images. We use noiseless simulation, based on the Hydrogen Epoch of Reionization Array Phase I configuration, to study the image power spectrum properties. The window functions show $<10^{-11}$ of the integrated power leaks from the foreground-dominated region into the EoR window; the 2D and 1D power spectra also verify the separation between the foregrounds and the EoR., Comment: Published in ApJ
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- 2023
41. Viscoelastic mechanics of tidally induced lake drainage in the Amery grounding zone
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Zhang, Hanwen, Katz, Richard F., and Stevens, Laura A.
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Physics - Geophysics - Abstract
Drainage of supraglacial lakes to the ice-sheet bed can occur when a hydrofracture propagates downward, driven by the weight of the water in the lake. For supraglacial lakes in the grounding zones of Antarctic glaciers, the mechanics of drainage is complicated by their proximity to the grounding line. Recently, a series of supraglacial lake-drainage events through hydrofractures was observed in the Amery Ice Shelf grounding zone, East Antarctica. The lake depth at drainage varied considerably between events, raising questions about the mechanisms that induce hydrofracture, even at low lake depths. Here we use a modelling approach to investigate the contribution of tidally driven flexure to hydrofracture propagation. We model the viscoelastic response of a marine ice sheet to tides, the stresses that are induced, and the contribution of tidal stresses to hydrofracture propagation. Our results show that ocean tides and lake-water pressure together control supraglacial lake drainage through hydrofractures in the grounding zone. We give a model-based criterion that predicts supraglacial lake drainage as a function of daily maximum tidal amplitude and lake depth. Our model-based criterion agrees with remotely sensed data, indicating the importance of tidal flexure to processes associated with hydrofracturing such as supraglacial lake drainage, rifting and calving., Comment: 23 pages, 10 figures
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- 2023
42. Overview of the Advanced X-ray Imaging Satellite (AXIS)
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Reynolds, Christopher S., Kara, Erin A., Mushotzky, Richard F., Ptak, Andrew, Koss, Michael J., Williams, Brian J., Allen, Steven W., Bauer, Franz E., Bautz, Marshall, Bodaghee, Arash, Burdge, Kevin B., Cappelluti, Nico, Cenko, Brad, Chartas, George, Chan, Kai-Wing, Corrales, Lía, Daylan, Tansu, Falcone, Abraham D., Foord, Adi, Grant, Catherine E., Habouzit, Mélanie, Haggard, Daryl, Herrmann, Sven, Hodges-Kluck, Edmund, Kargaltsev, Oleg, King, George W., Kounkel, Marina, Lopez, Laura A., Marchesi, Stefano, McDonald, Michael, Meyer, Eileen, Miller, Eric D., Nynka, Melania, Okajima, Takashi, Pacucci, Fabio, Russell, Helen R., Safi-Harb, Samar, Stassun, Keivan G., Falcão, Anna Trindade, Walker, Stephen A., Wilms, Joern, Yukita, Mihoko, and Zhang, William W.
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
The Advanced X-ray Imaging Satellite (AXIS) is a Probe-class concept that will build on the legacy of the Chandra X-ray Observatory by providing low-background, arcsecond-resolution imaging in the 0.3-10 keV band across a 450 arcminute$^2$ field of view, with an order of magnitude improvement in sensitivity. AXIS utilizes breakthroughs in the construction of lightweight segmented X-ray optics using single-crystal silicon, and developments in the fabrication of large-format, small-pixel, high readout rate CCD detectors with good spectral resolution, allowing a robust and cost-effective design. Further, AXIS will be responsive to target-of-opportunity alerts and, with onboard transient detection, will be a powerful facility for studying the time-varying X-ray universe, following on from the legacy of the Neil Gehrels (Swift) X-ray observatory that revolutionized studies of the transient X-ray Universe. In this paper, we present an overview of AXIS, highlighting the prime science objectives driving the AXIS concept and how the observatory design will achieve these objectives., Comment: Published in Proceedings of SPIE Optics & Photonics 2023, San Diego
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- 2023
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43. Modular Boundaries in Recurrent Neural Networks
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Tanner, Jacob, L., Sina Mansour, Coletta, Ludovico, Gozzi, Alessandro, and Betzel, Richard F.
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Quantitative Biology - Neurons and Cognition ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
Recent theoretical and experimental work in neuroscience has focused on the representational and dynamical character of neural manifolds --subspaces in neural activity space wherein many neurons coactivate. Importantly, neural populations studied under this "neural manifold hypothesis" are continuous and not cleanly divided into separate neural populations. This perspective clashes with the "modular hypothesis" of brain organization, wherein neural elements maintain an "all-or-nothing" affiliation with modules. In line with this modular hypothesis, recent research on recurrent neural networks suggests that multi-task networks become modular across training, such that different modules specialize for task-general dynamical motifs. If the modular hypothesis is true, then it would be important to use a dimensionality reduction technique that captures modular structure. Here, we investigate the features of such a method. We leverage RNNs as a model system to study the character of modular neural populations, using a community detection method from network science known as modularity maximization to partition neurons into distinct modules. These partitions allow us to ask the following question: do these modular boundaries matter to the system? ...
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- 2023
44. Scaling slowly rotating asteroids by stellar occultations
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Marciniak, A., Ďurech, J., Choukroun, A., Hanuš, J., Ogłoza, W., Szakáts, R., Molnár, L., Pál, A., Monteiro, F., Frappa, E., Beisker, W., Pavlov, H., Moore, J., Adomavičienė, R., Aikawa, R., Andersson, S., Antonini, P., Argentin, Y., Asai, A., Assoignon, P., Barton, J., Baruffetti, P., Bath, K. L., Behrend, R., Benedyktowicz, L., Bernasconi, L., Biguet, G., Billiani, M., Błażewicz, D., Boninsegna, R., Borkowski, M., Bosch, J., Brazill, S., Bronikowska, M., Bruno, A., Bąk, M. Butkiewicz, Caron, J., Casalnuovo, G., Castellani, J. J., Ceravolo, P., Conjat, M., Delincak, P., Delpau, J., Demeautis, C., Demirkol, A., Dróżdż, M., Duffard, R., Durandet, C., Eisfeldt, D., Evangelista, M., Fauvaud, S., Fauvaud, M., Ferrais, M., Filipek, M., Fini, P., Fukui, K., Gährken, B., Geier, S., George, T., Goffin, B., Golonka, J., Goto, T., Grice, J., Guhl, K., Halíř, K., Hanna, W., Harman, M., Hashimoto, A., Hasubick, W., Higgins, D., Higuchi, M., Hirose, T., Hirsch, R., Hofschulz, O., Horaguchi, T., Horbowicz, J., Ida, M., Ignácz, B., Ishida, M., Isobe, K., Jehin, E., Joachimczyk, B., Jones, A., Juan, J., Kamiński, K., Kamińska, M. K., Kankiewicz, P., Kasebe, H., Kattentidt, B., Kim, D. -H., Kim, M. -J., Kitazaki, K., Klotz, A., Komraus, M., Konstanciak, I., Tóth, R. Könyves, Kouno, K., Kowald, E., Krajewski, J., Krannich, G., Kreutzer, A., Kryszczyńska, A., Kubánek, J., Kudak, V., Kugel, F., Kukita, R., Kulczak, P., Lazzaro, D., Licandro, J., Livet, F., Maley, P., Manago, N., Mánek, J., Manna, A., Matsushita, H., Meister, S., Mesquita, W., Messner, S., Michelet, J., Michimani, J., Mieczkowska, I., Morales, N., Motyliński, M., Murawiecka, M., Newman, J., Nikitin, V., Nishimura, M., Oey, J., Oszkiewicz, D., Owada, M., Pakštienė, E., Pawłowski, M., Pereira, W., Perig, V., Perła, J., Pilcher, F., Podlewska-Gaca, E., Polák, J., Polakis, T., Polińska, M., Popowicz, A., Richard, F., Rives, J. J., Rodrigues, T., Rogiński, Ł., Rondón, E., Rottenborn, M., Schäfer, R., Schnabel, C., Schreurs, O., Selva, A., Simon, M., Skiff, B., Skrutskie, M., Skrzypek, J., Sobkowiak, K., Sonbas, E., Sposetti, S., Stuart, P., Szyszka, K., Terakubo, K., Thomas, W., Trela, P., Uchiyama, S., Urbanik, M., Vaudescal, G., Venable, R., Watanabe, Ha., Watanabe, Hi., Winiarski, M., Wróblewski, R., Yamamura, H., Yamashita, M., Yoshihara, H., Zawilski, M., Zelený, P., Żejmo, M., Żukowski, K., and Żywica, S.
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Astrophysics - Earth and Planetary Astrophysics - Abstract
As evidenced by recent survey results, majority of asteroids are slow rotators (P>12 h), but lack spin and shape models due to selection bias. This bias is skewing our overall understanding of the spins, shapes, and sizes of asteroids, as well as of their other properties. Also, diameter determinations for large (>60km) and medium-sized asteroids (between 30 and 60 km) often vary by over 30% for multiple reasons. Our long-term project is focused on a few tens of slow rotators with periods of up to 60 hours. We aim to obtain their full light curves and reconstruct their spins and shapes. We also precisely scale the models, typically with an accuracy of a few percent. We used wide sets of dense light curves for spin and shape reconstructions via light-curve inversion. Precisely scaling them with thermal data was not possible here because of poor infrared data: large bodies are too bright for WISE mission. Therefore, we recently launched a campaign among stellar occultation observers, to scale these models and to verify the shape solutions, often allowing us to break the mirror pole ambiguity. The presented scheme resulted in shape models for 16 slow rotators, most of them for the first time. Fitting them to stellar occultations resolved previous inconsistencies in size determinations. For around half of the targets, this fitting also allowed us to identify a clearly preferred pole solution, thus removing the ambiguity inherent to light-curve inversion. We also address the influence of the uncertainty of the shape models on the derived diameters. Overall, our project has already provided reliable models for around 50 slow rotators. Such well-determined and scaled asteroid shapes will, e.g. constitute a solid basis for density determinations when coupled with mass information. Spin and shape models continue to fill the gaps caused by various biases., Comment: Accepted to Astronomy & Astrophysics. 12 pages + appendices
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- 2023
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45. Granular dilatancy and non-local fluidity of partially molten rock
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Katz, Richard F., Rudge, John F., and Hansen, Lars N.
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Physics - Fluid Dynamics ,Physics - Geophysics - Abstract
Partially molten rock is a densely packed, melt-saturated, granular medium, but it has seldom been considered in these terms. In this manuscript, we extend the continuum theory of partially molten rock to incorporate the physics of granular media. Our formulation includes dilatancy in a viscous constitutive law and introduces a non-local fluidity. We analyse the resulting poro-viscous--granular theory in terms of two modes of liquid--solid segregation that are observed in published torsion experiments: localisation of liquid into high-porosity sheets and radially inward liquid flow. We show that the newly incorporated granular physics brings the theory into agreement with experiments. We discuss these results in the context of grain-scale physics across the nominal jamming fraction at the high homologous temperatures relevant in geological systems., Comment: 31 pages, 9 figures, 4 appendicies
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- 2023
46. BASS XXXIV: A Catalog of the Nuclear Mm-wave Continuum Emission Properties of AGNs Constrained on Scales $\lesssim$ 100--200 pc
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Kawamuro, Taiki, Ricci, Claudio, Mushotzky, Richard F., Imanishi, Masatoshi, Bauer, Franz E., Ricci, Federica, Koss, Michael J., Privon, George C., Trakhtenbrot, Benny, Izumi, Takuma, Ichikawa, Kohei, Rojas, Alejandra F., Smith, Krista Lynne, Shimizu, Taro, Oh, Kyuseok, Brok, Jakob S. den, Baba, Shunsuke, Balokovic, Mislav, Chang, Chin-Shin, Kakkad, Darshan, Pfeifle, Ryan W., Temple, Matthew J., Ueda, Yoshihiro, Harrison, Fiona, Powell, Meredith C., Stern, Daniel, Urry, Meg, and Sanders, David B.
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Astrophysics - Astrophysics of Galaxies - Abstract
We present a catalog of the millimeter-wave (mm-wave) continuum properties of 98 nearby ($z <$ 0.05) active galactic nuclei (AGNs) selected from the 70-month Swift/BAT hard X-ray catalog that have precisely determined X-ray spectral properties and subarcsec-resolution ALMA Band-6 (211--275 GHz) observations as of 2021 April. Due to the hard-X-ray ($>$ 10 keV) selection, the sample is nearly unbiased for obscured systems at least up to Compton-thick-level obscuration, and provides the largest number of AGNs with high physical resolution mm-wave data ($\lesssim$ 100--200 pc). Our catalog reports emission peak coordinates, spectral indices, and peak fluxes and luminosities at 1.3 mm (230 GHz). Additionally, high-resolution mm-wave images are provided. Using the images and creating radial surface brightness profiles of mm-wave emission, we identify emission extending from the central source and isolated blob-like emission. Flags indicating the presence of these emission features are tabulated. Among 90 AGNs with significant detections of nuclear emission, 37 AGNs ($\approx$ 41%) appear to have both or one of extended or blob-like components. We, in particular, investigate AGNs that show well-resolved mm-wave components and find that these seem to have a variety of origins (i.e., a jet, radio lobes, a secondary AGN, stellar clusters, a narrow line region, galaxy disk, active star-formation regions, and AGN-driven outflows), and some components have currently unclear origins., Comment: 49 pages, 7 figures, 3 tables, accepted for publication in ApJS
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- 2023
47. The high-speed X-ray camera on AXIS
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Miller, Eric D., Bautz, Marshall W., Grant, Catherine E., Foster, Richard F., LaMarr, Beverly, Malonis, Andrew, Prigozhin, Gregory, Schneider, Benjamin, Leitz, Christopher, Herrmann, Sven, Allen, Steven W., Chattopadhyay, Tanmoy, Orel, Peter, Morris, R. Glenn, Stueber, Haley, Falcone, Abraham D., Ptak, Andrew, and Reynolds, Christopher
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
AXIS is a Probe-class mission concept that will provide high-throughput, high-spatial-resolution X-ray spectral imaging, enabling transformative studies of high-energy astrophysical phenomena. To take advantage of the advanced optics and avoid photon pile-up, the AXIS focal plane requires detectors with readout rates at least 20 times faster than previous soft X-ray imaging spectrometers flying aboard missions such as Chandra and Suzaku, while retaining the low noise, excellent spectral performance, and low power requirements of those instruments. We present the design of the AXIS high-speed X-ray camera, which baselines large-format MIT Lincoln Laboratory CCDs employing low-noise pJFET output amplifiers and a single-layer polysilicon gate structure that allows fast, low-power clocking. These detectors are combined with an integrated high-speed, low-noise ASIC readout chip from Stanford University that provides better performance than conventional discrete solutions at a fraction of their power consumption and footprint. Our complementary front-end electronics concept employs state of the art digital video waveform capture and advanced signal processing to deliver low noise at high speed. We review the current performance of this technology, highlighting recent improvements on prototype devices that achieve excellent noise characteristics at the required readout rate. We present measurements of the CCD spectral response across the AXIS energy band, augmenting lab measurements with detector simulations that help us understand sources of charge loss and evaluate the quality of the CCD backside passivation technique. We show that our technology is on a path that will meet our requirements and enable AXIS to achieve world-class science., Comment: 17 pages, 11 figures, submitted to Proceedings of SPIE Optics + Photonics 2023
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- 2023
48. Management dampens seasonal variability in soil microclimates and alters its chemical and physical properties in a semi-arid region
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Kurylo, Jessica S, Le, Jennifer T, Mehring, Andrew, and Ambrose, Richard F
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Built Environment and Design ,Biological Sciences ,Ecology ,Urban and Regional Planning ,Life on Land ,Urban and regional planning - Abstract
Abstract: The urbanization process substantially alters every aspect of the soil environment. In this study, we compared soil microclimate, chemistry, and physical characteristics of unmanaged natural soils with managed soils of three common urban land uses (stormwater natural treatment systems, ornamentally landscaped areas, and lawns) across three University of California campuses. Over the course of 1-year, average monthly soil temperatures among land uses showed fewer than expected differences. Average monthly soil moisture reflected wet and dry seasonal changes, but this pattern was muted in managed land uses compared to natural soils due to irrigation. From April through December, lawns and landscaped areas were significantly wetter than natural soils (e.g. 1.5–3 times higher in August and September). Soil organic matter, total carbon, and total nitrogen were significantly higher in lawns compared to other land uses, while their bulk density was significantly lower. Principle component analysis confirmed that natural and lawn soil properties were distinct from each other. These differences in the managed soils, particularly lawns, are attributable to typical urban land management practices such as fertilization, irrigation, and the installation of organic-rich sod. As urbanization continues to change the native landscape of semi-arid regions, these changes to soil microclimate, chemistry, and physical characteristics are important to consider for urban best practices and sustainable development.
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- 2024
49. Long-Term Results of Organ Preservation in Patients With Rectal Adenocarcinoma Treated With Total Neoadjuvant Therapy: The Randomized Phase II OPRA Trial
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Verheij, Floris S, Omer, Dana M, Williams, Hannah, Lin, Sabrina T, Qin, Li-Xuan, Buckley, James T, Thompson, Hannah M, Yuval, Jonathan B, Kim, Jin K, Dunne, Richard F, Marcet, Jorge, Cataldo, Peter, Polite, Blase, Herzig, Daniel O, Liska, David, Oommen, Samuel, Friel, Charles M, Ternent, Charles, Coveler, Andrew L, Hunt, Steven, Gregory, Anita, Varma, Madhulika G, Bello, Brian L, Carmichael, Joseph C, Krauss, John, Gleisner, Ana, Guillem, José G, Temple, Larissa, Goodman, Karyn A, Segal, Neil H, Cercek, Andrea, Yaeger, Rona, Nash, Garrett M, Widmar, Maria, Wei, Iris H, Pappou, Emmanouil P, Weiser, Martin R, Paty, Philip B, Smith, J Joshua, Wu, Abraham J, Gollub, Marc J, Saltz, Leonard B, and Garcia-Aguilar, Julio
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Cancer ,Rare Diseases ,Radiation Oncology ,Clinical Trials and Supportive Activities ,Clinical Research ,Orphan Drug ,Patient Safety ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Humans ,Adenocarcinoma ,Chemoradiotherapy ,Neoadjuvant Therapy ,Neoplasm Recurrence ,Local ,Neoplasm Staging ,Organ Preservation ,Rectal Neoplasms ,Treatment Outcome ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
Clinical trials frequently include multiple end points that mature at different times. The initial report, typically based on the primary end point, may be published when key planned co-primary or secondary analyses are not yet available. Clinical Trial Updates provide an opportunity to disseminate additional results from studies, published in JCO or elsewhere, for which the primary end point has already been reported.To assess long-term risk of local tumor regrowth, we report updated organ preservation rate and oncologic outcomes of the OPRA trial (ClinicalTrials.gov identifier: NCT02008656). Patients with stage II/III rectal cancer were randomly assigned to receive induction chemotherapy followed by chemoradiation (INCT-CRT) or chemoradiation followed by consolidation chemotherapy (CRT-CNCT). Patients who achieved a complete or near-complete response after finishing treatment were offered watch-and-wait (WW). Total mesorectal excision (TME) was recommended for those who achieved an incomplete response. The primary end point was disease-free survival (DFS). The secondary end point was TME-free survival. In total, 324 patients were randomly assigned (INCT-CRT, n = 158; CRT-CNCT, n = 166). Median follow-up was 5.1 years. The 5-year DFS rates were 71% (95% CI, 64 to 79) and 69% (95% CI, 62 to 77) for INCT-CRT and CRT-CNCT, respectively (P = .68). TME-free survival was 39% (95% CI, 32 to 48) in the INCT-CRT group and 54% (95% CI, 46 to 62) in the CRT-CNCT group (P = .012). Of 81 patients with regrowth, 94% occurred within 2 years and 99% occurred within 3 years. DFS was similar for patients who underwent TME after restaging (64% [95% CI, 53 to 78]) and patients in WW who underwent TME after regrowth (64% [95% CI, 53 to 78]; P = .94). Updated analysis continues to show long-term organ preservation in half of the patients with rectal cancer treated with total neoadjuvant therapy. In patients who enter WW, most cases of tumor regrowth occur in the first 2 years.
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- 2024
50. Pilot trial testing the effects of exercise on chemotherapy-induced peripheral neurotoxicity (CIPN) and the interoceptive brain system
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Kleckner, Ian R., Manuweera, Thushini, Lin, Po-Ju, Chung, Kaitlin H., Kleckner, Amber S., Gewandter, Jennifer S., Culakova, Eva, Tivarus, Madalina E., Dunne, Richard F., Loh, Kah Poh, Mohile, Nimish A., Kesler, Shelli R., and Mustian, Karen M.
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- 2024
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