417 results on '"Rice, Stephen P."'
Search Results
2. Labor and Culture in the New Nation
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Rice, Stephen P. (Stephen Patrick)
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- 2000
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3. Considerations for the Cure Assumption in an NICE Single Technology Appraisal of Nivolumab with Chemotherapy for Neoadjuvant Treatment of Resectable Non-Small Cell Lung Cancer: Evidence Assessment Group Perspective
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Orozco-Leal, Giovany, Johnson, Eugenie Evelynne, Hosseinijebeli, Sedighe, Robinson, Tomos, Homer, Tara, Eastaugh, Claire H., Richmond, Catherine, Tanner, Louise, Meader, Nick, Kenny, Ryan, Wallace, Sheila A., and Rice, Stephen
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- 2024
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4. Disease Severity Modifier in the NICE Single Technology Appraisal of Trastuzumab Deruxtecan: External Assessment Group Perspective
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Coughlan, Diarmuid, Arisa, Oluwatomi, Thomson, Katie, Yu, Ge, Pearson, Fiona, Kernohan, Ashleigh, Gonzalez-Moral, Sonia Garcia, Wallace, Sheila, and Rice, Stephen
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- 2024
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5. Defining the condensate landscape of fusion oncoproteins
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Tripathi, Swarnendu, Shirnekhi, Hazheen K., Gorman, Scott D., Chandra, Bappaditya, Baggett, David W., Park, Cheon-Gil, Somjee, Ramiz, Lang, Benjamin, Hosseini, Seyed Mohammad Hadi, Pioso, Brittany J., Li, Yongsheng, Iacobucci, Ilaria, Gao, Qingsong, Edmonson, Michael N., Rice, Stephen V., Zhou, Xin, Bollinger, John, Mitrea, Diana M., White, Michael R., McGrail, Daniel J., Jarosz, Daniel F., Yi, S. Stephen, Babu, M. Madan, Mullighan, Charles G., Zhang, Jinghui, Sahni, Nidhi, and Kriwacki, Richard W.
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- 2023
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6. A qualitative interview study applying the COM-B model to explore how hospital-based trainers implement antimicrobial stewardship education and training in UK hospital-based care
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Turner, Rebecca, Hart, Jo, Ashiru-Oredope, Diane, Atkins, Lou, Eades, Christopher, Felton, Tim, Howlett, Emily, Rice, Stephen, Shallcross, Laura, Lorencatto, Fabiana, and Byrne-Davis, Lucie
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- 2023
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7. Rate of Adverse Outcomes During 6-Hour Observation for Asymptomatic Patients with Select Ingestions
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Keenan, Michael, Rice, Stephen, Frawley, Emma, Jacques, Chelsie, Wojcik, Susan, and Marraffa, Jeanna
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- 2023
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8. The genomic landscape of pediatric acute lymphoblastic leukemia
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Brady, Samuel W., Roberts, Kathryn G., Gu, Zhaohui, Shi, Lei, Pounds, Stanley, Pei, Deqing, Cheng, Cheng, Dai, Yunfeng, Devidas, Meenakshi, Qu, Chunxu, Hill, Ashley N., Payne-Turner, Debbie, Ma, Xiaotu, Iacobucci, Ilaria, Baviskar, Pradyuamna, Wei, Lei, Arunachalam, Sasi, Hagiwara, Kohei, Liu, Yanling, Flasch, Diane A., Liu, Yu, Parker, Matthew, Chen, Xiaolong, Elsayed, Abdelrahman H., Pathak, Omkar, Li, Yongjin, Fan, Yiping, Michael, J. Robert, Rusch, Michael, Wilkinson, Mark R., Foy, Scott, Hedges, Dale J., Newman, Scott, Zhou, Xin, Wang, Jian, Reilly, Colleen, Sioson, Edgar, Rice, Stephen V., Pastor Loyola, Victor, Wu, Gang, Rampersaud, Evadnie, Reshmi, Shalini C., Gastier-Foster, Julie, Guidry Auvil, Jaime M., Gesuwan, Patee, Smith, Malcolm A., Winick, Naomi, Carroll, Andrew J., Heerema, Nyla A., Harvey, Richard C., Willman, Cheryl L., Larsen, Eric, Raetz, Elizabeth A., Borowitz, Michael J., Wood, Brent L., Carroll, William L., Zweidler-McKay, Patrick A., Rabin, Karen R., Mattano, Leonard A., Maloney, Kelly W., Winter, Stuart S., Burke, Michael J., Salzer, Wanda, Dunsmore, Kimberly P., Angiolillo, Anne L., Crews, Kristine R., Downing, James R., Jeha, Sima, Pui, Ching-Hon, Evans, William E., Yang, Jun J., Relling, Mary V., Gerhard, Daniela S., Loh, Mignon L., Hunger, Stephen P., Zhang, Jinghui, and Mullighan, Charles G.
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- 2022
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9. Vertical reworking of sediment by the cased caddisfly Glossosomatidae (Agapetus fuscipes) increases sand exposure and availability in armoured gravel-bed rivers
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Mason, Richard J., Johnson, Matthew F., Bailey, Lydia, Rice, Stephen P., and Wood, Paul J.
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- 2022
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10. Clinical and cost effectiveness of endoscopic bipolar radiofrequency ablation for the treatment of malignant biliary obstruction: a systematic review
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Beyer Fiona, Rice Stephen, Orozco-Leal Giovany, Still Madeleine, O’Keefe Hannah, O’Connor Nicole, Stoniute Akvile, Craig Dawn, Pereira Stephen, Carr Louise, and Leeds John
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Medical technology ,R855-855.5 - Abstract
Background Early evidence suggests that using radiofrequency ablation as an adjunct to standard care (i.e. endoscopic retrograde cholangiopancreatography with stenting) may improve outcomes in patients with malignant biliary obstruction. Objectives To assess the clinical effectiveness, cost-effectiveness and potential risks of endoscopic bipolar radiofrequency ablation for malignant biliary obstruction, and the value of future research. Data sources Seven bibliographic databases, three websites and seven trials registers were searched from 2008 until 21 January 2021. Review methods The study inclusion criteria were as follows: patients with biliary obstruction caused by any form of unresectable malignancy; the intervention was reported as an endoscopic biliary radiofrequency ablation to ablate malignant tissue that obstructs the bile or pancreatic ducts, either to fit a stent (primary radiofrequency ablation) or to clear an obstructed stent (secondary radiofrequency ablation); the primary outcomes were survival, quality of life or procedure-related adverse events; and the study design was a controlled study, an observational study or a case report. Risk of bias was assessed using Cochrane tools. The primary analysis was meta-analysis of the hazard ratio of mortality. Subgroup analyses were planned according to the type of probe, the type of stent (i.e. metal or plastic) and cancer type. A de novo Markov model was developed to model cost and quality-of-life outcomes associated with radiofrequency ablation in patients with primary advanced bile duct cancer. Insufficient data were available for pancreatic cancer and secondary bile duct cancer. An NHS and Personal Social Services perspective was adopted for the analysis. A probabilistic analysis was conducted to estimate the incremental cost-effectiveness ratio for radiofrequency ablation and the probability that radiofrequency ablation was cost-effective at different thresholds. The population expected value of perfect information was estimated in total and for the effectiveness parameters. Results Sixty-eight studies (1742 patients) were included in the systematic review. Four studies (336 participants) were combined in a meta-analysis, which showed that the pooled hazard ratio for mortality following primary radiofrequency ablation compared with a stent-only control was 0.34 (95% confidence interval 0.21 to 0.55). Little evidence relating to the impact on quality of life was found. There was no evidence to suggest an increased risk of cholangitis or pancreatitis, but radiofrequency ablation may be associated with an increase in cholecystitis. The results of the cost-effectiveness analysis were that the costs of radiofrequency ablation was £2659 and radiofrequency ablation produced 0.18 quality-adjusted life-years, which was more than no radiofrequency ablation on average. With an incremental cost-effectiveness ratio of £14,392 per quality-adjusted life-year, radiofrequency ablation was likely to be cost-effective at a threshold of £20,000 per quality-adjusted life-year across most scenario analyses, with moderate uncertainty. The source of the vast majority of decision uncertainty lay in the effect of radiofrequency ablation on stent patency. Limitations Only 6 of 18 comparative studies contributed to the survival meta-analysis, and few data were found concerning secondary radiofrequency ablation. The economic model and cost-effectiveness meta-analysis required simplification because of data limitations. Inconsistencies in standard reporting and study design were noted. Conclusions Primary radiofrequency ablation increases survival and is likely to be cost-effective. The evidence for the impact of secondary radiofrequency ablation on survival and of quality of life is limited. There was a lack of robust clinical effectiveness data and, therefore, more information is needed for this indication. Future work Future work investigating radiofrequency ablation must collect quality-of-life data. High-quality randomised controlled trials in secondary radiofrequency ablation are needed, with appropriate outcomes recorded. Study registration This study is registered as PROSPERO CRD42020170233. Funding This project was funded by the National Institute for Health and Care Research (NIHR) Health Technology Assessment programme and will be published in full in Health Technology Assessment; Vol. 27, No. 7. See the NIHR Journals Library website for further project information. Plain language summary: What was the question? The bile and pancreatic ducts transport fluids to the intestines to help people digest their food properly. Some types of cancer can cause these ducts to become totally or partially blocked. We wanted to know if endoscopic radiofrequency ablation is safe and works well to treat people who have one of these blockages that cannot be removed by surgery. Radiofrequency ablation burns away a blockage by hitting it with radio waves. Endoscopic means that the radio waves are directed to the blockage using a thin, tube-like wire with a camera at the end. During radiofrequency ablation, a person might have a small tube called a stent put into their bile or pancreatic duct to keep it open or to replace an already blocked stent. What did we do? We searched for research studies that looked at (1) whether or not radiofrequency ablation was able to remove blockages from the ducts, (2) if radiofrequency ablation allowed people to live longer, (3) if patients had a better quality of life after radiofrequency ablation, (4) if radiofrequency ablation caused any side effects and (5) how much it costs to treat people with radiofrequency ablation. What did we find? We found that treatment with radiofrequency ablation before giving a person a stent helped them to live a little longer with their cancer. We did not find any evidence that radiofrequency ablation increased pain or swelling in the bile duct or pancreatic duct. Radiofrequency ablation might cause more swelling in the gall bladder than having a stent without radiofrequency ablation, but there was not enough research available for us to be certain of this. What does this mean? Radiofrequency ablation before inserting a stent could be a safe option to add to treatment of bile and pancreatic duct blockages caused by cancer. There is limited research evidence and so we are unable to recommend radiofrequency ablation as a treatment for standard clinical practice. Scientific summary: Background The aim of this research was to establish the expected value of undertaking additional research to determine the clinical effectiveness, cost-effectiveness and safety of endoscopic bipolar radiofrequency ablation (RFA) for the treatment of malignant biliary obstruction. Objectives To carry out a systematic review to assess the clinical effectiveness and potential risks of endoscopic bipolar RFA for malignant biliary obstruction. To undertake a systematic review to assess the cost-effectiveness of endoscopic bipolar RFA for malignant biliary obstruction. To develop a decision model to estimate cost-effectiveness based on the data derived from the systematic reviews. To assess the value of further research by undertaking a value of information analysis from the data and results generated by the decision model. Methods Clinical effectiveness review The systematic review followed robust published methods, was registered on PROSPERO (reference CRD42020170233) and is reported in accordance with PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidance. Eligibility criteria Population Patients with biliary obstruction caused by any form of unresectable malignancy. Intervention Endoscopic biliary RFA used to ablate malignant tissue that obstructed the bile, either to fit a stent (primary RFA) or to clear an obstructed stent (secondary RFA). Studies that used RFA that was not endoscopic were excluded. Comparator Insertion of a stent to clear the bile or standard care where patients had an occluded stent. Primary outcomes Survival, quality of life and procedure-related adverse events (AEs). Secondary outcomes Technical success, relief of biliary obstruction, pain, nausea, resource use, number of further interventions, length of hospital stays and reintervention and re-admission rates. Study design Controlled studies, uncontrolled observational studies and case reports. Search strategy A robust search strategy was designed using a range of bibliographic databases, grey literature resources and trial registries, which were searched to January 2021 to identify eligible studies. Searches were carried out from 2008 because endoscopic biliary RFA was not available before then. References of relevant systematic reviews and included studies were checked for eligible studies. All results were downloaded to EndNote (Clarivate Analytics, Philadelphia, PA, USA) and de-duplicated. Data selection and extraction Two reviewers independently screened the titles and abstracts of the search results and two reviewers independently screened the full texts of studies that were deemed relevant. Disagreements were resolved by discussion or reference to the Clinical Advisory Board. Data were extracted by one reviewer and checked by a second reviewer. Where studies were reported in multiple publications, we checked all publications for relevant data, but considered all data as from a single study. Where data were missing or unclear, authors were contacted for clarification. The following data items were extracted: citation information, study design, participant demographic and clinical characteristics, intervention characteristics (including of the stent and the RFA procedure), comparator characteristics (including details of stent and of ‘standard care’), our primary and secondary outcomes, and details of study methods to facilitate an assessment of risk of bias. Risk-of-bias assessment Risk-of-bias assessment was conducted by two reviewers independently at a study level, using the Cochrane Risk of Bias 2.0 tool for randomised controlled trials (RCTs) and the ROBINS-I (Risk Of Bias In Non-randomized Studies – of Interventions) tool for non-RCTs. Non-comparative studies and abstracts were not formally assessed using a specific tool, but were given less weight in the synthesis. Data synthesis A summary of study characteristics, study design, risk-of-bias assessments and results was presented. The primary analysis was meta-analysis of the hazard ratio (HR) of mortality using a random-effects generic inverse variance model, with planned separate analyses for primary and secondary RFA. Meta-analyses were conducted with and without adjustment for bias. Without adjustment for bias, consideration was given to whether or not it was meaningful to combine studies of very different quality. The key confounding factor was whether or not patients received chemotherapy, as chemotherapy also affects survival. Non-randomised studies were combined with RCTs if they controlled for chemotherapy. Analyses were also carried out for time to occlusion and for AE rates using Mantel–Haenszel weighting and a random-effects model. Heterogeneity between studies was assessed by visual inspection of plots of the data, from the chi-squared test for heterogeneity and the I2-statistic. Possible reasons for heterogeneity were explored. Subgroup analyses were planned according to the type of probe, the type of stent (i.e. metal or plastic) and the type of cancer. Where studies did not provide appropriate data for the meta-analysis, we used narrative synthesis. The effectiveness estimates fed into the economic model. Cost-effectiveness review Similar methods were followed as for the clinical effectiveness review. The same search strategy was used as for the clinical effectiveness review, with the addition of the economic studies filter used to populate the NHS Economic Evaluation Database. The only difference in eligibility criteria was in study designs, as only full economic evaluations were included. However, no eligible studies were located. Development of cost-effectiveness model The primary economic objective was to evaluate the cost-effectiveness of RFA for patients with unresectable biliary malignancies, as follows: bile duct cancer patients receiving primary RFA bile duct cancer patients receiving secondary RFA pancreatic cancer patients receiving primary RFA pancreatic cancer patients receiving secondary RFA. The secondary economic objective was to estimate the population expected value of perfect information (PEVPI), which is an estimate of the maximum value that could be gained from undertaking future research on RFA from a decision-maker’s point of view regarding the adoption of RFA. There was sufficient evidence to develop only a model specifically for bile duct cancer patients receiving primary RFA. No cost-effectiveness models for RFA in these populations was found in the systematic review of cost-effectiveness studies and so a de novo economic model was developed to evaluate the cost-effectiveness of RFA with endoscopic stent insertion compared with endoscopic stent placement alone. A Markov model was developed to model the cost and quality-of-life outcomes associated with RFA over the remaining lifetimes of the patients. An NHS and Personal Social Services perspective was adopted for the analysis. Costs and benefits were discounted at an annual rate of 3.5%. The price year was 2018/19. The key effectiveness outcomes for RFA were survival and time to occlusion (blockage). It is possible that a patient may experience more than one occlusion, requiring more than one intervention. Effectiveness evidence was available for time to the first occlusion. Consequently, the model included a state for reintervention following the first occlusion, and a state for subsequent reinterventions following subsequent occlusions. Following a reintervention, patients enter a post-intervention state until another occlusion occurs or they die. The cycle length was 1 month. Effectiveness data were obtained from the meta-analyses in the systematic review of effectiveness. Plausible adjustments of the effectiveness estimates were made for bias based on clinical expert opinion and reviewer bias assessments. A probabilistic analysis was conducted to estimate the incremental cost-effectiveness ratio (ICER) for RFA and the probability that RFA was cost-effective at different cost-effectiveness thresholds. The PEVPI was also estimated in total and for the effectiveness parameters (Figure i). FIGURE iMarkov model structure. Results Clinical effectiveness review The search retrieved 4131 results after de-duplication, and update searches retrieved a further 287 de-duplicated results, giving a total of 4418 results. A total of 697 full-text results were screened in EndNote, and a total of 68 studies were included in the review. Eighteen studies were comparative studies and 50 were non-comparative studies, including a total of 1742 patients (plus one study that did not report participant numbers). A majority (53%) of results were conference abstracts with no peer-reviewed published report. Twenty-four studies were conducted in Asia, 20 in European countries, 20 in the USA, two in South American countries and two in Australia. Most patients had biliary obstruction arising from cholangiocarcinoma (where reported). The most commonly reported probe used for the ablation procedure was the Habib™ EndoHPB catheter (Boston Scientific Corporation, Marlborough, MA, USA) (n = 35), although many studies did not report the detail of the equipment used. Studies reported the insertion of a first stent (primary RFA; n = 40), the unblocking of an existing stent (secondary RFA; n = 15) or both (n = 11), but this was unclear in two studies. Risk-of-bias assessment One of the two published RCTs was judged to be at high risk of bias overall and one gave rise to ‘some concerns’. Four of the five published non-RCTs were judged to be at moderate risk of bias and one was judged to be at low risk of bias. Survival Eighteen comparative studies reported a measure of survival. Of these 18 studies, two RCTs, one retrospective case–control study and three retrospective cohort studies reported a HR of death for primary RFA compared with stent-only control. Four of these studies were for the base-case meta-analysis, which showed that RFA reduced the hazard of dying by 66% [pooled HR 0.34, 95% confidence interval (CI) 0.21 to 0.55]. There was moderate heterogeneity (I2 = 53%). The effect sizes across the studies were consistently in favour of RFA. Where survival was not reported, most studies reported mean or median survival time, and results were mixed. There was little evidence of prolonged survival in patients who received secondary RFA compared with stent only. Quality of life Two studies reported the Karnofsky Performance Score and one study described this as a quality-of-life measure, although it is designed to measure physical functional performance. Both studies reported a higher Karnofsky Performance Score (i.e. better function) in patients who received RFA than in patients who received stent only, up to 9 months after the procedure. Adverse events The most commonly reported AEs were cholangitis (i.e. an inflamed bile duct), pancreatitis (i.e. an inflamed pancreas) and cholecystitis (i.e. an inflamed gallbladder). Five of 16 comparative studies reported no evidence of differences in AEs between groups, but the studies did not specify particular AEs. Seven studies specified the number of specific AEs in both intervention and control arms, and were pooled in meta-analyses. Radiofrequency ablation appeared to carry a higher risk of cholecystitis than stent placement alone. None of the control group patients had cholecystitis in four studies that explicitly reported cholecystitis, and the remaining seven studies reported cholecystitis in the RFA group only. There was no evidence of any difference in incidence of cholangitis or pancreatitis between groups. Between 6% and 33% of patients experienced cholangitis, and between 4% and 7% of patients reportedly developed pancreatitis. Mild, self-limiting abdominal pain was reported in five studies, ranging from a small percentage to most patients. Technical success Although the majority of the included studies did not report the ‘technical success’ outcome explicitly, the inference was made if study authors reported the RFA procedure as ‘being successful’, having ‘no complications’ or ‘no technical problems’, or described other similar phrases implying technical success. The vast majority of studies reported 100% technical success. One study reported that 59% of procedures were successful, but in some of the remaining cases the procedure was not attempted. A further study reported 89% success. Occlusion In four RCTs and a cohort study, there was no evidence of improvement in stent patency from primary RFA. The reported range of time to occlusion across studies of primary RFA was 23 days to 22 months. There was limited evidence from a case–control study and a cohort study of improvement in stent patency for patients undergoing secondary RFA. The reported range of time to occlusion across studies of secondary RFA was 2–10 months. Cost-effectiveness model In the base-case analysis, the average discounted cost for the RFA intervention was £2659 more than the average discounted cost for the stent-only control. The average discounted quality-adjusted life-years (QALYs) for the RFA intervention was 0.18 more than the average discounted QALYs for the stent-only control. The ICER for RFA was £14,736 per QALY. The probability that RFA plus stent is cost-effective is 0.82 at a £20,000 per QALY cost-effectiveness threshold and is 0.92 at a £30,000 per QALY cost-effectiveness threshold. The PEVPI for the base-case analysis is £9.14M at a cost-effectiveness threshold of £20,000 per QALY and is £5.66M at a cost-effectiveness threshold of £30,000 per QALY, indicating that there may be value in undertaking further research. Radiofrequency ablation was cost-effective at a threshold of £30,000 per QALY across all scenario analyses and cost-effective at a threshold of £20,000 per QALY across almost all scenarios. Three factors significantly increased PEVPI: (1) adjusting for bias in the effectiveness estimates, (2) increasing the probability of complications and, therefore, staying overnight in hospital for several days from 10% to 20% and (3) reducing the utility of living with advanced cancer from 0.61 to 0.5. The source of the vast majority of decision uncertainty lay in the uncertainty associated with the effect of RFA on stent patency, and this is reflected in the population expected value of partial perfect information values of £8.3M at a £20,000 per QALY threshold and £4.5M at a £30,000 per QALY threshold. This is more than a clinical trial would cost. A clinical trial would not eliminate uncertainty in the effectiveness estimate. However, decision uncertainty could almost be eliminated by demonstrating RFA non-inferiority in stent patency in a quality clinical study. Conclusions Primary RFA appears to improve survival and is likely to be cost-effective; however, the evidence for this is mainly in patients with bile duct cancers rather than in patients with pancreatic cancers. Only 6 of 18 comparative studies could be included in the meta-analysis looking at survival because of the differences in outcome measures, but none reported a decrease in survival in the RFA group. There was no increased risk of cholangitis or pancreatitis following RFA, but possibly an increased risk of cholecystitis. There was a lack of high-quality data examining similar outcomes in patients undergoing secondary RFA. For both primary and secondary RFA, there were insufficient data to determine the effect of RFA on quality of life. Recommendations for further research include the following: Prospective RCTs of primary RFA should be conducted, with a specific focus on quality of life and accurate reporting of AEs in each group. Patients with pancreatic cancers should be classified separately from patients with bile duct cancers, to determine the effects of RFA in each group. The mechanism by which primary RFA has a beneficial effect on survival should be explored. Consideration should be given to whether or not a repeat application of RFA at a specified interval may further improve outcomes in patients with both pancreatic and bile duct cancers. High-quality prospective RCTs of secondary RFA should be carried out to determine whether or not there is benefit to survival and quality of life, including accurate reporting of AEs. These RCTs should also incorporate an assessment of cost-effectiveness. If benefit is shown in secondary RFA, an exploration of the mechanism should be carried out. Study registration This study is registered as PROSPERO CRD42020170233. Funding This project was funded by the National Institute for Health and Care Research (NIHR) Health Technology Assessment programme and will be published in full in Health Technology Assessment; Vol. 27, No. 7. See the NIHR Journals Library website for further project information.
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- 2023
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11. Accounting for the power of nature: Using flume and field studies to compare the capacities of bio‐energy and fluvial energy to move surficial gravels
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Johnson, Matthew F., primary, Albertson, Lindsey K., additional, Everall, Nicholas C., additional, Harvey, Gemma L., additional, Mason, Richard, additional, Pledger, Andrew, additional, Rice, Stephen P., additional, and Thorne, Colin R., additional
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- 2024
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12. Avoidance and aggregation create consistent egg distribution patterns of congeneric caddisflies across spatially variable oviposition landscapes
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Lancaster, Jill, Downes, Barbara J., Lester, Rebecca E., and Rice, Stephen P.
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- 2020
13. Factors Predicting Patients’ Willingness to Use Robotic Dental Services
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Milner, Mattie, Mehta, Rian, Winter, Scott R., Rice, Stephen, Anania, Emily, Ragbir, Nadine, and Smith, Cynthia
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- 2021
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14. Accounting for the power of nature: Using flume and field studies to compare the capacities of bio-energy and fluvial energy to move surficial gravels
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Johnson, Matthew F., Albertson, Lindsey K., Everall, Nicholas C., Harvey, Gemma L., Mason, Richard, Pledger, Andrew, Rice, Stephen P., Thorne, Colin R., Johnson, Matthew F., Albertson, Lindsey K., Everall, Nicholas C., Harvey, Gemma L., Mason, Richard, Pledger, Andrew, Rice, Stephen P., and Thorne, Colin R.
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River channels, riparian and floodplain forms and dynamics are all influenced strongly by biological processes. However, the influence of macroinvertebrates on entrainment and transport of river sediments remains poorly understood. We use an energy-based approach to explore the capacity of benthic animals to move surficial, gravel-bed particles in field and laboratory settings and use the results to assess the relative significance of biological and physical benthic processes. Our results showed that in 11 British gravel-bed rivers, the maximum energy content (i.e., calorific content) of macroinvertebrate communities generally matched the flow energy associated with median discharges and, at multiple sites, exceeded that of the 10-year return interval flood. A series of laboratory experiments used to estimate the minimum energy expended by signal crayfish (Pacifastacus leniusculus) when performing geomorphic work established that crayfish move gravel particles at energy levels below that expected of the flow, complicating direct comparisons of the capacity for macroinvertebrates and fluvial flows to influence bed mobility. Our findings suggest that the influence of macroinvertebrate communities in either promoting or suppressing, the mobilisation of the bed may be large compared to equivalent values of fluvial energy. Based on these findings, we conclude that in the gravel-bed rivers studied, the macroinvertebrate community's potential to perform geomorphic work matches or exceeds the stream power during most of the year. Although our study examined biological and fluvial energy systems separately, it is important to recognise that in nature, these systems are highly interactive. It follows that utilising the energy framework presented in this paper could lead to rapid advances in both fluvial biogeomorphology and river management and restoration.
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- 2024
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15. Building a predictive model of U.S. patient willingness to undergo robotic surgery
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Anania, Emily C., Rice, Stephen, and Winter, Scott R.
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- 2021
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16. HSV‐1 ICP27 targets the TBK1‐activated STING signalsome to inhibit virus‐induced type I IFN expression
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Christensen, Maria H, Jensen, Søren B, Miettinen, Juho J, Luecke, Stefanie, Prabakaran, Thaneas, Reinert, Line S, Mettenleiter, Thomas, Chen, Zhijian J, Knipe, David M, Sandri-Goldin, Rozanne M, Enquist, Lynn W, Hartmann, Rune, Mogensen, Trine H, Rice, Stephen A, Nyman, Tuula A, Matikainen, Sampsa, and Paludan, Søren R
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Emerging Infectious Diseases ,Sexually Transmitted Infections ,HIV/AIDS ,Infectious Diseases ,2.2 Factors relating to the physical environment ,Aetiology ,Infection ,Cells ,Cultured ,Herpesvirus 1 ,Human ,Host-Pathogen Interactions ,Humans ,Immediate-Early Proteins ,Immune Evasion ,Interferon Type I ,Macrophages ,Membrane Proteins ,Protein Interaction Mapping ,Protein Serine-Threonine Kinases ,herpes simplex virus ,immune evasion ,innate immunity ,type I IFN ,Biological Sciences ,Information and Computing Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
Herpes simplex virus (HSV) 1 stimulates type I IFN expression through the cGAS-STING-TBK1 signaling axis. Macrophages have recently been proposed to be an essential source of IFN during viral infection. However, it is not known how HSV-1 inhibits IFN expression in this cell type. Here, we show that HSV-1 inhibits type I IFN induction through the cGAS-STING-TBK1 pathway in human macrophages, in a manner dependent on the conserved herpesvirus protein ICP27. This viral protein was expressed de novo in macrophages with early nuclear localization followed by later translocation to the cytoplasm where ICP27 prevented activation of IRF3. ICP27 interacted with TBK1 and STING in a manner that was dependent on TBK1 activity and the RGG motif in ICP27. Thus, HSV-1 inhibits expression of type I IFN in human macrophages through ICP27-dependent targeting of the TBK1-activated STING signalsome.
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- 2016
17. SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data
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Davis, Eric M., Sun, Yu, Liu, Yanling, Kolekar, Pandurang, Shao, Ying, Szlachta, Karol, Mulder, Heather L., Ren, Dongren, Rice, Stephen V., Wang, Zhaoming, Nakitandwe, Joy, Gout, Alexander M., Shaner, Bridget, Hall, Salina, Robison, Leslie L., Pounds, Stanley, Klco, Jeffery M., Easton, John, and Ma, Xiaotu
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- 2021
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18. Using Potential Performance Theory to Assess Differences in Math Abilities between Citizens from India and the United States
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Rice, Stephen and Trafimow, David
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For years, researchers and academics have known that American students perform more poorly on average compared to students from some other countries, including India. The usual explanation is that some systematic factor (e.g. knowledge, skill set, test-taking ability, etc.) is responsible for the differences. The current study examines the issue from a different perspective; we assess the consistency in which participants performed in an Algebra test, and used this consistency to determine their potential performance. Participants were randomly selected from India and the United States and were given a 50-question algebra test, followed by a break, and then followed by the same test again. The data revealed that while the Indian participants scored about 8% higher on the test, the majority of their performance increase was due to being more consistent than their American counterparts.
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- 2012
19. Using Potential Performance Theory to Assess How to Increase Student Consistency in Taking Exams
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Rice, Stephen, Trafimow, David, and Kraemer, Keegan
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It has been a concern among educators and academics that U.S. students suffer from a lack of knowledge about the world around them. This is reflected in low history scores, particularly in world history. The common explanation for this is that there is some systematic deficiency in American students, in that they either do not know the material or have poor testing strategies. We offer a different way of looking at this problem using Potential Performance Theory (PPT). With PPT, we assessed the consistency with which students answered test questions and show how much performance would improve if a student were perfectly consistent. Furthermore, we show how much improvement there is in consistency over multiple sessions. Participants were given a short world history test six times in a row. The results were interesting. Consistency did improve with practice, but the systematic factors that students employed (e.g. strategies) were poor enough to counter-act the improvement due to rising consistency levels.
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- 2012
20. Our Students Suffer from Both Lack of Knowledge and Consistency: A PPT (Potential Performance Theory) Analysis of Test-Taking
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Rice, Stephen, Geels, Kasha, Trafimow, David, and Hackett, Holly
- Abstract
Test scores are used to assess one's general knowledge of a specific area. Although strategies to improve test performance have been previously identified, the consistency with which one uses these strategies has not been analyzed in such a way that allows assessment of how much consistency affects overall performance. Participants completed one of many exams over a variety of educational subjects. PPT (Potential Performance Theory) (Trafimow & Rice, 2008; 2009) was used to analyze their scores. Results indicated that consistency played a large role in affecting observed performance. Had participants been perfectly consistent, their observed performances would have been significantly higher. Analysis of sample individual data revealed that different individuals need to work specifically on either consistency, content knowledge, or both. (Contains 2 tables and 2 figures.)
- Published
- 2011
21. Male energy reserves, mate-searching activities, and reproductive success: alternative resource use strategies in a presumed capital breeder
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Glaudas, Xavier, Rice, Stephen E., Clark, Rulon W., and Alexander, Graham J.
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- 2020
- Full Text
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22. Open-source electronic data capture system offered increased accuracy and cost-effectiveness compared with paper methods in Africa.
- Author
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Dillon, David, Pirie, Fraser, Rice, Stephen, Pomilla, Cristina, Sandhu, Manjinder, Motala, Ayesha, and Young, Elizabeth
- Subjects
Data capture ,Electronic questionnaire ,Epidemiology ,Open-source ,Sub-Saharan Africa ,Survey ,Africa ,Cost-Benefit Analysis ,Data Collection ,Electronics ,Humans ,Paper ,Reproducibility of Results ,Surveys and Questionnaires - Abstract
OBJECTIVES: Existing electronic data capture options are often financially unfeasible in resource-poor settings or difficult to support technically in the field. To help facilitate large-scale multicenter studies in sub-Saharan Africa, the African Partnership for Chronic Disease Research (APCDR) has developed an open-source electronic questionnaire (EQ). STUDY DESIGN AND SETTING: To assess its relative validity, we compared the EQ against traditional pen-and-paper methods using 200 randomized interviews conducted in an ongoing type 2 diabetes case-control study in South Africa. RESULTS: During its 3-month validation, the EQ had a lower frequency of errors (EQ, 0.17 errors per 100 questions; paper, 0.73 errors per 100 questions; P-value ≤0.001), and a lower monetary cost per correctly entered question, compared with the pen-and-paper method. We found no marked difference in the average duration of the interview between methods (EQ, 5.4 minutes; paper, 5.6 minutes). CONCLUSION: This validation study suggests that the EQ may offer increased accuracy, similar interview duration, and increased cost-effectiveness compared with paper-based data collection methods. The APCDR EQ software is freely available (https://github.com/apcdr/questionnaire).
- Published
- 2014
23. The long-term dynamics of invasive signal crayfish forcing of fluvial sediment supply via riverbank burrowing
- Author
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Sanders, Catherine H., primary, Rice, Stephen P., additional, Wood, Paul J., additional, and Mathers, Kate L., additional
- Published
- 2023
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24. Beyond equilibrium: Re-evaluating physical modelling of fluvial systems to represent climate changes
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Baynes, Edwin R.C., van de Lageweg, Wietse I., McLelland, Stuart J., Parsons, Daniel R., Aberle, Jochen, Dijkstra, Jasper, Henry, Pierre-Yves, Rice, Stephen P., Thom, Moritz, and Moulin, Frederic
- Published
- 2018
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25. Tributary connectivity, confluence aggradation and network biodiversity
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Rice, Stephen P.
- Published
- 2017
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26. Are there socio-economic inequalities in utilization of predictive biomarker tests and biological and precision therapies for cancer? A systematic review and meta-analysis
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Norris, Ruth P., Dew, Rosie, Sharp, Linda, Greystoke, Alastair, Rice, Stephen, Johnell, Kristina, and Todd, Adam
- Published
- 2020
- Full Text
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27. Patient Perceptions of New Robotic Technologies in Clinical Restorative Dentistry
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Milner, Mattie N., Anania, Emily C., Candelaria-Oquendo, Karla, Rice, Stephen, Winter, Scott R., and Ragbir, Nadine K.
- Published
- 2019
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28. Does Methodological Guidance Produce Consistency? A Review of Methodological Consistency in Breast Cancer Utility Value Measurement in NICE Single Technology Appraisals
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Rose, Micah, Rice, Stephen, and Craig, Dawn
- Published
- 2018
- Full Text
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29. Temporal variability in lotic macroinvertebrate communities associated with invasive signal crayfish (Pacifastacus leniusculus) activity levels and substrate character
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Mathers, Kate L., Rice, Stephen P., and Wood, Paul J.
- Published
- 2018
- Full Text
- View/download PDF
30. The long-term dynamics of invasive signal crayfish forcing of fluvial sediment supply via riverbank burrowing
- Author
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Sanders, Catherine H., Rice, Stephen P., Wood, Paul J., Mathers, Kate L., Sanders, Catherine H., Rice, Stephen P., Wood, Paul J., and Mathers, Kate L.
- Abstract
Animals are important drivers of sediment dynamics. Invasive signal crayfish (Pacifastacus leniusculus) have been shown to supply sediment to rivers by burrowing into riverbanks. Burrowing directly transfers excavated sediment into the river and also has an additional indirect affect by promoting riverbank failure. While previous research has isolated burrow densities at a point in time, rates of burrow construction and of burrow loss due to erosion are unknown, which introduces uncertainty into estimates of how much sediment burrows contribute to rivers. Here we report results from a 5-year study that evaluated the temporal dynamics of crayfish populations, rates of burrow loss due to erosion, and the mass of sediment directly supplied to rivers by burrow excavation. At ten reaches across five lowland streams in England, we estimated the mass of sediment displaced by 1861 new and previously constructed burrows. Both crayfish and burrow densities were variable over time, suggesting that burrows contribute temporally variable amounts of fine sediment to riverine systems. 42 % of observed burrows were constructed within the previous 365 days, and individual burrows lasted on average 461 days. Applying this to comparable historical data, an average of 2.0 t km−1 a−1 of sediment was excavated to construct burrows in the study reaches, which is eight times more than estimated in previous studies. Whilst total burrow densities in each year were not consistently correlated with contemporary crayfish densities, the mass of sediment excavated over the prior year was strongly correlated with contemporary crayfish densities. Current fine sediment management practices are largely aimed at controlling fine sediment delivery, predominately from agricultural activities, but biotic burrowing into riverbanks may represent an important and overlooked source of fine sediment supply. Incorporation of biotic processes in sediment dynamics would improve the accuracy of fluvial sediment b
- Published
- 2023
31. Correction to: Male energy reserves, mate-searching activities, and reproductive success: alternative resource use strategies in a presumed capital breeder
- Author
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Glaudas, Xavier, Rice, Stephen E., Clark, Rulon W., and Alexander, Graham J.
- Published
- 2020
- Full Text
- View/download PDF
32. VCF2CNA: A tool for efficiently detecting copy-number alterations in VCF genotype data and tumor purity
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Putnam, Daniel K., Ma, Xiaotu, Rice, Stephen V., Liu, Yu, Newman, Scott, Zhang, Jinghui, and Chen, Xiang
- Published
- 2019
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33. Issues Related to the Frequency of Exploratory Analyses by Evidence Review Groups in the NICE Single Technology Appraisal Process
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Kaltenthaler, Eva, Carroll, Christopher, Hill-McManus, Daniel, Scope, Alison, Holmes, Michael, Rice, Stephen, Rose, Micah, Tappenden, Paul, and Woolacott, Nerys
- Published
- 2017
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34. Microsatellite records for volume 8, issue 2
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Almojil, Dareen, Arias, Maria Cristina, Beasley, Rochelle R., Chen, Yiyong, Clark, Rulon W., Dong, Yinghui, Dong, Zhiguo, Forsdick, Natalie, Françoso, Elaine, González-Ortegón, E., González-Tizón, A. M., Gui, Linsheng, Guo, Huayang, Guo, Hongfang, Hale, Marie L., Jiang, Shigui, Jones, Kenneth L., Lance, Stacey L., Lei, Yi, Li, Jiuxuan, Li, Xiaoyan, Li, Haotian, Li, Chuanwu, Li, Xiaoying, Li, Jiale, Lian, Zongqiang, Liang, Zhiqiang, Lindgreen, Stinus, Liu, Tiantian, Liu, Mingqiu, Liu, Zhihong, Liu, Xiaojun, Lu, Yongqiang, Lv, Tianshu, Ma, Qingzhan, Ma, Wenming, Martínez-Lage, A., Massaro, Melanie, Niu, Donghong, Perina, A., Ramalho, Mauro, Ricardo, Paulo Cseri, Rice, Stephen E., Santos, Priscila Karla Ferreira, Sha, Weilai, Silva, Maise, Song, Zhaobin, Sun, Xiujun, Vizcaíno, A., Wang, Yaning, Wang, Xiaoyu, Wang, Chongrui, Wang, Chenghe, Wei, Dawei, Wu, Xudong, Wu, Biao, Xiang, Xing, Xue, Shuyu, Yang, Aiguo, Yuan, Xiping, Zan, Linsen, Zhan, Aibin, Zhang, Nan, Zhang, Dianchang, Zhang, Huanxin, Zhang, Jiupan, Zhang, Le, Zhang, Guangming, Zhang, Honghai, Zhang, Zaiyong, Zhang, Guangming, Zhao, Chao, Zhou, Yu, Zhou, Liqing, Zhu, Kecheng, and Zhu, Wanchao
- Published
- 2016
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35. The Clinical and Cost Effectiveness of Ustekinumab for the Treatment of Psoriatic Arthritis: A Critique of the Evidence
- Author
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O’Connor, Joanne, Rice, Stephen, Smith, Alison, Rodgers, Mark, Lopez, Rocio Rodriguez, Craig, Dawn, and Woolacott, Nerys
- Published
- 2016
- Full Text
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36. How Religious Engagement Shapes the College Experience of African American Christian Males at a Predominantly White Institution: A Phenomenological Approach
- Author
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Rice, Stephen J.
- Abstract
Understanding the different aspects of the college experience of African American males in a predominantly White institution is an important topic for researchers. This focus directly responds to the despairing statistics surrounding collegiate African American males, who often show lower graduation rates compared to other racial groups. The need to refocus research is especially urgent given the significant gap between male and female African American college students. One often-overlooked issue concerns the religious engagement of African American Christian males at predominantly White institutions, and how that engagement may shape their college experience. Based on the overwhelming data received by the participants, this study, which originally set out to look at spirituality in African American males, opened up to an exploration of religious engagement. The study aimed to answer the following research question: How does religious engagement shape the college experience of African American Christian males at a predominantly White institution. The research sub question is: How do African American males define spirituality? This study's framework draws upon the research of Alexander Astin, Helen Astin, and Jennifer Lindholm (2011) on the religious life of college students. These researchers categorized how students manage their religious life into three key areas: (a) religious commitment, (b) religious engagement, and (c) religious conservatism. The present study focused mainly on religious engagement. Qualitative methods, specifically phenomenology in the form of one- on-one interviews were used to gather the data. The participants were recruited through a snowball effect, which resulted in 11 students who identified as African American or Black males having a spiritual background (however they defined it) and functioning as full-time students at the host site. The results showed evidence that religious engagement shapes the college experience of African American males at a predominantly White institution. These findings were shown through (a) the various ways that students engaged in their religion lives, (b) how the students used their religious engagement to define their purpose, (c) how the students tried to develop their own personal religious identities, and (d) the importance they granted to creating their own religious communities. New findings from the study included the recognition that students were struggling to deal with aspects of college life that were odds with their religious identities. The student-participants were trying to find ways to navigate conflicting issues in college, such as having sex, partying, and consuming alcohol. At the end of the dissertation, the researcher offers recommendations and implications for university administrators to consider. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2012
37. Effects of Response Bias and Judgment Framing on Operator Use of an Automated Aid in a Target Detection Task
- Author
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Rice, Stephen and McCarley, Jason S.
- Abstract
Automated diagnostic aids prone to false alarms often produce poorer human performance in signal detection tasks than equally reliable miss-prone aids. However, it is not yet clear whether this is attributable to differences in the perceptual salience of the automated aids' misses and false alarms or is the result of inherent differences in operators' cognitive responses to different forms of automation error. The present experiments therefore examined the effects of automation false alarms and misses on human performance under conditions in which the different forms of error were matched in their perceptual characteristics. Young adult participants performed a simulated baggage x-ray screening task while assisted by an automated diagnostic aid. Judgments from the aid were rendered as text messages presented at the onset of each trial, and every trial was followed by a second text message providing response feedback. Thus, misses and false alarms from the aid were matched for their perceptual salience. Experiment 1 found that even under these conditions, false alarms from the aid produced poorer human performance and engendered lower automation use than misses from the aid. Experiment 2, however, found that the asymmetry between misses and false alarms was reduced when the aid's false alarms were framed as neutral messages rather than explicit misjudgments. Results suggest that automation false alarms and misses differ in their inherent cognitive salience and imply that changes in diagnosis framing may allow designers to encourage better use of imperfectly reliable automated aids. (Contains 4 figures, 2 tables and 1 footnote.)
- Published
- 2011
- Full Text
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38. Stabilization of fluvial bed sediments by invasive quagga mussels (Dreissena bugensis)
- Author
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Sanders, Harry, primary, Mason, Richard J., additional, Mills, Daniel N., additional, and Rice, Stephen P., additional
- Published
- 2022
- Full Text
- View/download PDF
39. Influence of invasive crayfish on fine sediment transport, ingress and bed storage in lowland rivers
- Author
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Mathers, Kate L., primary, Rice, Stephen P., additional, Chadd, Richard, additional, and Wood, Paul J., additional
- Published
- 2022
- Full Text
- View/download PDF
40. How Often Is p[subscript rep] Close to the True Replication Probability?
- Author
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Trafimow, David, MacDonald, Justin A., and Rice, Stephen
- Abstract
Largely due to dissatisfaction with the standard null hypothesis significance testing procedure, researchers have begun to consider alternatives. For example, Killeen (2005a) has argued that researchers should calculate p[subscript rep] that is purported to indicate the probability that, if the experiment in question were replicated, the obtained finding would be in the same direction as the original finding. However, Killeen also seems to indicate that rather than being the probability of replication, p[subscript rep] is actually the probability of obtaining a finding whereby the experimental group mean exceeds the control group mean. Our goal was to determine the relative frequency with which obtained p[subscript rep] statistics are close to true replication probabilities. Regardless of which way p[subscript rep] is defined, our simulations show that it is unlikely to be close to the true value unless both the population effect magnitude and the sample size are uncommonly large. The definitional problem in combination with the inaccuracy under either interpretation, constitutes an important challenge for those who espouse the routine computation of p[subscript rep] statistics. (Contains 4 figures and 5 footnotes.)
- Published
- 2010
- Full Text
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41. Conservation Genetic Assessment of the Island Night Lizard, Xantusia riversiana, Under Contemporary and Future Environmental Conditions
- Author
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Rice, Stephen Edward
- Subjects
Biology ,Ecology ,Conservation biology ,Channel Islands ,Microsatellites ,Xantusia - Abstract
The island night lizard, Xantusia riversiana, is an endemic reptile to three California Channel Islands that was recently delisted from the Endangered Species Act. Several long-term ecological studies have characterized the species throughout its range, yet there are aspects of the ecology which remain unresolved including sensitivity to climatic change. I collected 917 lizards from the full range of the subspecies X. r. reticulata on Santa Barbara Island and San Clemente Island and genotyped all individuals at 23 microsatellite loci. I used these genetic data to determine contemporary patterns in genetic structure and landscape-level correlates with genetic divergence on each island. I found significant population structure on each island with collection sites displaying effects of fragmentation from crystalline ice plant, coastal cholla, unpaved roadways, and canyons. I used genetic and capture data to identify average parent-offspring differences of 14 m on Santa Barbara Island and 41 m on San Clemente Island. A permutation based logistic regression revealed that related individuals >0.8 years old were more likely to be captured together on both islands, suggesting the presence of cryptic sociality. Spatial autocorrelation analyses of inter-individual genetic distances revealed different scales of spatial independence on each island (102 - 169 m on SBI and 955 - 1,424 m on SCI). These results suggest scale-dependent effects of each island below which individuals are more genetically related than expected by chance and may indicate a patch size for familial territory or ranges. I leveraged capture data and historical climate data to construct species distribution models (SDMs) focused on Santa Barbara and San Clemente Islands and projected to the year 2100 under climate change. These models predicted >93% loss in suitable habitat by 2038. I used the SDM for Santa Barbara Island and the results of genetic and spatial analyses to parameterize stochastic demogenetic simulations to determine the sensitivity of island night lizards to climate change using a coupled niche-population model framework. These simulations demonstrate X. riversiana is highly vulnerable to climate change with expected minimum abundances of 0% - 1% of contemporary population size. Conservation implications and management suggestions are discussed throughout each chapter.
- Published
- 2017
42. Potential Performance Theory (PPT): A General Theory of Task Performance Applied to Morality
- Author
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Trafimow, David and Rice, Stephen
- Abstract
People can use a variety of different strategies to perform tasks and these strategies all have two characteristics in common. First, they can be evaluated in comparison with either an absolute or a relative standard. Second, they can be used at varying levels of consistency. In the present article, the authors develop a general theory of task performance called "potential performance theory" (PPT) that distinguishes between observed scores and true scores that are corrected for inconsistency (i.e., potential scores). In addition, they argue that any kind of improvement to task performance, whatever it may be, works by influencing either task strategies, which comprise all nonrandom components that are relevant to the task, or the consistency with which strategies are used. In the current study, PPT is used to demonstrate how task strategies and the consistencies with which they are used impact actual performance in the domain of morality. These conclusions are extended to other domains of task performance. (Contains 5 figures, 2 tables and 2 footnotes.)
- Published
- 2008
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- View/download PDF
43. Vertical reworking of sediment by the cased caddisfly Glossosomatidae (Agapetus fuscipes) increases sand exposure and availability in armoured gravel-bed rivers
- Author
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Mason, Richard, Johnson, Matthew F., Bailey, Lydia, Rice, Stephen P., Wood, Paul J., Mason, Richard, Johnson, Matthew F., Bailey, Lydia, Rice, Stephen P., and Wood, Paul J.
- Abstract
Landscapes and ecosystems are the result of two-way interactions between hydro-geomorphic and biological processes. Many animals, particularly those that build structures or transport sediment, are important biogeomorphic agents. Glossosomatidae caddisfly larvae (Insecta, Trichoptera) are globally widespread and abundant inhabitants of gravel-bed rivers. Glossosomatidae build mobile cases from sand that they transport over the river bed. However, there is limited understanding on how Glossosomatidae bioconstructions may influence sand distribution in rivers or how their zoogeomorphic behaviours are influenced by hydraulics or characteristics of the river bed. First, we conducted surveys to quantify the magnitude of sand incorporated into Glossosomatidae (Agapetus fuscipes) cases within a UK river. Second, we studied A. fuscipes movement behaviour and quantified the direction and magnitude of sediment reworking, in a flume, under differing flow velocity and gravel size treatments. We found that 99 % of A. fuscipes larvae transported sediment vertically upwards. This resulted in an average conveyance per larvae of 0.06 g sand upwards by 25 mm (maximum of 50 mm). In gravel beds with a coarse surface layer, this resulted in displacement of sand from sheltered interstices onto the surface of exposed gravel particles. In the flume, this behaviour was maintained even at high flows, sufficient to entrain empty cases from these locations. Whilst the mass of sediment moved by individual larvae is small, dense populations of Glossosomatidae larvae may have important consequences for the vertical distribution of sand in rivers. At our field site, A. fuscipes case density averaged 2192 cases m- 2, equivalent to 1.4 t km-1. This finding is important because in gravel-bed rivers frequented by Glossosomatidae larvae, sediment transport is typically limited by the availability of entrainable fine grain sediment at the surface. We discuss the implications of this sediment movement fo
- Published
- 2022
- Full Text
- View/download PDF
44. Stabilization of fluvial bed sediments by invasive quagga mussels (Dreissena bugensis)
- Author
-
Sanders, Harry, Mason, Richard, Mills, Daniel N., Rice, Stephen P., Sanders, Harry, Mason, Richard, Mills, Daniel N., and Rice, Stephen P.
- Abstract
River gravel mobility is an important control on river behaviour, morphology, and ecosystem processes. Gravel stability is dependent on abiotic flow and sediment properties, alongside less widely acknowledged biotic processes. The quagga mussel (Dreissena bugensis), a highly invasive bivalve, frequently occurs at high population densities in rivers and lakes. Quagga mussels attach to benthic sediments using byssal threads, which might affect sediment stability and thereby broader river geomorphology. We aimed to (1) characterize controls of quagga mussel sediment attachment by conducting a field survey in an invaded river, (2) investigate resultant changes in the critical shear stress needed to entrain fluvial bed materials via an ex situ flume experiment, for measured average (135 m−2) and potential future (270 m−2) mussel densities, and (3) model how this may affect sediment transport rates. From field surveys, mean quagga mussel density was 122 m−2, attaching to an average of 591 g m−2 of mineral bed sediments. Across the survey reach, mussels attached to all grain sizes available, with attachment driven by grain availability, rather than active selection of particular grain sizes. In the ex situ flume experiment, densities of 135 mussels m−2 did not significantly increase the critical shear stress of fluvial bed materials, but a density of 270 mussels m−2 significantly increased critical shear stress by 40%. Estimates of the proportion of time these critical stresses are exceeded at the field site indicated high densities of quagga mussels may reduce the occurrence of a geomorphically active flood event from Q30 to Q2. These results present feasible invasion scenarios, as quagga mussels frequently reach benthic densities orders of magnitude greater than observed here. This study indicates that substantial alterations to bedload sediment transport may occur following quagga mussel invasion. Future geomorphic modelling should include biology to better understand r
- Published
- 2022
- Full Text
- View/download PDF
45. Influence of invasive crayfish on fine sediment transport, ingress and bed storage in lowland rivers
- Author
-
Mathers, Kate, Rice, Stephen P., Chadd, Richard, Wood, Paul J., Mathers, Kate, Rice, Stephen P., Chadd, Richard, and Wood, Paul J.
- Abstract
Historically it has been assumed that abiotic forces dominate fluvial sediment dynamics. However, a growing body of work indicates that biological energy can also exert a significant control over sediment dynamics. The role that invasive species may play in altering fine sediment dynamics is particularly pertinent given that any influence may disrupt the natural equilibrium of the ecosystem. Here we investigated the effect of invasive signal crayfish (Pacisfastcus leniusculus) on the transport and storage of fine sediment in a densely populated river compared with a nearby control river without crayfish, over an 18-week period. We observed clear evidence of diurnal fluctuations in turbidity associated with crayfish presence including periodograms with power peaks at a period of 1 day. Fine sediment fluxes indicated that crayfish contributed on average 18.5% extra to baseflow loads than would be likely under abiotic forcing alone. Temporal variations in suspended sediment concentrations were also observed at the control site but these were different in character and exhibited no clear temporal pattern or consistency as confirmed by periodogram analysis. Crayfish did not have an effect on sediment ingress rates relative to the control site and, at the crayfish site, the reach scale sediment budget was in net equilibrium during the sampling period. Our results provide further evidence that biological energy alters riverine fine sediment dynamics and warrants consideration in sediment dynamic models.
- Published
- 2022
46. Animal perception in gravel-bed rivers: scales of sensing and environmental controls on sensory information
- Author
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Johnson, Matthew F. and Rice, Stephen P.
- Subjects
Perception in animals -- Research ,Fishes -- Physiological aspects ,Rivers -- Environmental aspects ,Earth sciences - Abstract
Animals make decisions based on the sensory information that they obtain from the environment and other organisms within that environment. In a river, this information is transported, transmitted, masked, and filtered by fluvial factors and processes, such as relative roughness and turbulent flow. By interpreting the resultant signals, animals decide on the suitability of habitat and their reaction to other organisms. While a great deal is known about the sensory biology of animals, only limited attention has been paid to the environmental controls on the propagation of sensory information within rivers. Here, the potential transport mechanisms and masking processes of the sensory information used by animals in gravel-bed rivers are assessed by considering how the physical nature of sensory signals are affected by river hydromorphology. In addition, the physical processes that animals have the potential to directly perceive are discussed. Understanding the environmental phenomena that animals directly perceive will substantially improve understanding of what controls animal distributions, shifting emphasis from identifying correlations between biotic and abiotic factors to a better appreciation of causation, with benefits for successful management. Les animaux prennent des decisions a la lumiere d'information sensorielle qu'ils obtiennent du milieu ambiant et d'autres organismes a l'interieur de ce dernier. Cette information est transportee, transmise, masquee et filtree par des facteurs et processus fluviaux comme la rugosite relative et l'ecoulement turbulent. En interpretant les signaux en resultant, les animaux decident si l'habitat est convenable et comment reagir a d'autres organismes. Si les connaissances sur la biologie sensorielle des animaux sont considerables, seule une attention limitee a ete accordee aux facteurs ambiants qui controlent la propagation de l'information sensorielle dans les rivieres. Nous evaluons les mecanismes de transport et processus de masquage potentiels de l'information sensorielle utilisee par les animaux dans des rivieres a lit de gravier en examinant l'incidence de l'hydromorphologie fluviale sur les proprietes physiques des signaux sensoriels. Nous abordons egalement les processus physiques qui pourraient etre directement percus par les animaux. La comprehension des phenomenes ambiants directement percus par les animaux ameliorera considerablement la comprehension des facteurs qui controlent la repartition des animaux, mettant ainsi l'accent sur une meilleure appreciation de la causation plutot que sur les correlations entre facteurs biotiques et abiotiques, ce qui devrait etre benefique pour une gestion efficace. [Traduit par la Redaction], Introduction to sensory perception The conservation and management of animals requires an understanding of their habitat needs. Equally, environmental processes that repulse animals need to be identified to limit potentially [...]
- Published
- 2014
- Full Text
- View/download PDF
47. The activity of signal crayfish (Pacifastacus leniusculus) in relation to thermal and hydraulic dynamics of an alluvial stream, UK
- Author
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Johnson, Matthew F., Rice, Stephen P., and Reid, Ian
- Published
- 2014
- Full Text
- View/download PDF
48. Enriched Environments, Cortical Plasticity, and Implications for the Systematic Design of Instruction.
- Author
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Rice, Stephen
- Abstract
Discussion of learning theories focuses on cortical plasticity, enriched learning environments, and the systematic design of instruction. Topics include neurophysiology; research on cortical plasticity and its implications for instructional systems design; linking theory with practice; discovery learning; and motivation and arousal, including Keller's model of motivation. (LRW)
- Published
- 1996
49. The Mechanics' Institute of the City of New-York and the Conception of Class Authority in Early Industrial America, 1830-1860
- Author
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RICE, STEPHEN P.
- Published
- 2000
50. The Boundaries of Authorship: Region and Race in the Short Stories of Maurice Thompson
- Author
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Rice, Stephen P.
- Published
- 1998
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