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This study aims to classify plant communities by applying discriminant analysis based on principal components (DAPC) on near-infrared spectra (FT-NIRS) starting from fresh herbage samples. Grassland samples (n~156) belonged to (i) recent alfalfa pure crops (CAA), (ii) recent grass–legume mixtures (GLM), (iii) permanent meadows derived from old alfalfa stands that were re-colonized (PMA), and iv) permanent meadows originated from old grass–legume mixtures (PLM). Samples were scanned using FT-NIRS, and a multivariate exploration of the original spectra was performed using DAPC. The following two scenarios were proposed: (i) cross-validation, where all data were used for model training, and (ii) semi-external validation, where the group assignment was performed without samples of the training set. The first two components explained 98% of the total variability. The DAPC model resulted in an overall assignment success rate of 77%, and, from cross-validation, it emerged that it was possible to assign the CAA and PMA to their group with more than of 80% of success, which were different in botanical and chemical composition. In comparison, GLM and PLM obtained lower success of assignment (~52%). External validation suggested similarity between PLM and GLM groups (93%) and between GLM and PLM (77%). However, a dataset increase could improve group differentiation.

Crossbreeding might be a valid strategy to valorize local pig breeds. Crossbreeding should reduce homozygosity and, as a consequence, yield hybrid vigor for fitness and production traits. This study aimed to quantify the persistence of autozygosity in terminal crossbred pigs compared with purebreds and, in turn, identify genomic regions where autozygosity’s persistence would not be found. The study was based on genotyping data from 20 European local pig breeds and three cosmopolitan pig breeds used to simulate crossbred offspring. This study consisted of two steps. First, one hundred matings were simulated for each pairwise combination of the 23 considered breeds (for a total of 276 combinations), ignoring the sex of the parent individuals in order to generate purebred and crossbred matings leveraging all the germplasm available. Second, a few preselected terminal-maternal breed pairs were used to mimic a realistic terminal crossbreeding system: (i) Mora Romagnola (boars) or Cinta Senese (boars) crossed with Large White (sows) or Landrace (sows); (ii) Duroc (boars) crossed with Mora Romagnola (sows) or Cinta Senese (sows). Runs of homozygosity was used to estimate genome-wide autozygosity (FROH). Observed FROH was higher in purebreds than in crossbreds, although some crossbred combinations showed higher FROH than other purebred combinations. Among the purebreds, the highest FROH values were observed in Mora Romagnola and Turopolje (0.50 and 0.46, respectively). FROH ranged from 0.04 to 0.16 in the crossbreds Alentejana × Large White and Alentejana × Iberian, respectively. Persistence of autozygosity was found in several genomic segments harboring regions where quantitative trait loci (QTLs) were found in the literature. The regions were enriched in QTLs involved in fatty acid metabolism and associated with performance traits. This simulation shows that autozygosity persists in most breed combinations of terminal crosses. Results suggest that a strategy for crossbreeding is implemented when leveraging autochthonous and cosmopolitan breeds to obtain most of the hybrid vigor.

Abstract The fatty acids profile has been playing a decisive role in recent years, thanks to technological, sensory and health demands from producers and consumers. The application of NIRS technique on fat tissues, could lead to more efficient, practical, and economical in the quality control. The study aim was to assess the accuracy of Fourier Transformed Near Infrared Spectroscopy technique to determine fatty acids composition in fat of 12 European local pig breeds. A total of 439 spectra of backfat were collected both in intact and minced tissue and then were analyzed using gas chromatographic analysis. Predictive equations were developed using the 80% of samples for the calibration, followed by full cross validation, and the remaining 20% for the external validation test. NIRS analysis of minced samples allowed a better response for fatty acid families, n6 PUFA, it is promising both for n3 PUFA quantification and for the screening (high, low value) of the major fatty acids. Intact fat prediction, although with a lower predictive ability, seems suitable for PUFA and n6 PUFA while for other families allows only a discrimination between high and low values.

Abstract Preserving diversity of indigenous pig (Sus scrofa) breeds is a key factor to (i) sustain the pork chain (both at local and global scales) including the production of high-quality branded products, (ii) enrich the animal biobanking and (iii) progress conservation policies. Single nucleotide polymorphism (SNP) chips offer the opportunity for whole-genome comparisons among individuals and breeds. Animals from twenty European local pigs breeds, reared in nine countries (Croatia: Black Slavonian, Turopolje; France: Basque, Gascon; Germany: Schwabisch-Hällisches Schwein; Italy: Apulo Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda; Lithuania: Indigenous Wattle, White Old Type; Portugal: Alentejana, Bísara; Serbia: Moravka, Swallow-Bellied Mangalitsa; Slovenia: Krškopolje pig; Spain: Iberian, Majorcan Black), and three commercial breeds (Duroc, Landrace and Large White) were sampled and genotyped with the GeneSeek Genomic Profiler (GGP) 70 K HD porcine genotyping chip. A dataset of 51 Wild Boars from nine countries was also added, summing up to 1186 pigs (~ 49 pigs/breed). The aim was to: (i) investigate individual admixture ancestries and (ii) assess breed traceability via discriminant analysis on principal components (DAPC). Albeit the mosaic of shared ancestries found for Nero Siciliano, Sarda and Moravka, admixture analysis indicated independent evolvement for the rest of the breeds. High prediction accuracy of DAPC mark SNP data as a reliable solution for the traceability of breed-specific pig products.

Hay is one of the primary constituents of ruminant feed, and rapid classification systems of nutritional value are essential. A reliable approach to evaluating hay quality is a combination of visual combined inspection by NIRS analysis. The analysis was carried out on 1,639 samples of hay collected from 2016 to 2021 in northern Italy. Discriminant analysis (DAPC) on five hay types (FOM, forage mixtures; APG, first alfalfa cutting with prevalence of graminaceous >50%; PRA, prevailing alfalfa >50%; PUA, purity alfalfa >95%; and PEM, permanent meadows) was performed by ex-ante visual inspection categorization and NIRS analysis. This study aimed to provide a complementary method to differentiate hay types and classify unknown samples. Two scenarios were used: i) all data were used for model training, and the discriminant functions were extracted based on all samples; ii) the assignment of each group was assessed without samples belonging to the training set group. DAPC model resulted in an overall assignment success rate of 66%; precisely, the success was 84, 79, 69, 37, and 27% for PUA, FOM, PRA, APG, and PEM, respectively. In the second scenario, three groups showed percentages of posterior assignment probability higher than 70% to only one group: PUA with PRA (~ 99%), PRA with PUA (~71%), and PEM with FOM (~75%). Discriminant analysis can be successfully used to differentiate hay types and could also be used to assess factors related to hay quality in addition to NIRS analysis.

Background: Buffalo breeding has significantly increased in Brazil over recent years. However, few genetic evaluations have been conducted. Objective: To assess Genotype x Environment Interactions in the Mediterranean Water Buffalo in Brazil, for weight at 205 days of age, using reaction norm models via random regression. Methods: Data for buffaloes born between 1990 and 2014 were collected from five farms ascribed to the Brazilian Buffaloe Improvement Program, located in the North (1), Northeast (1), South (2) and Southeast (1) regions of Brazil. The initial database consisted of 5,280 observations at 205 days of age (W205). We assessed fit using two hierarchical reaction norm models: a two-step (HRNM2s) and a one-step (HRNM1s). Model fit was estimated using the Deviance Information Criterion, Deviance Based on Bayes Factors and Deviance based on Conditional Predictive Ordinate. The environmental descriptors were created to group individuals into common production environments based on year, season, herd and sex. Results: The best fit was obtained for the hierarchical reaction norm model with one-step (HRNM1s). Direct heritability estimates for this model ranged from 0.17 to 0.67 and the maternal heritability from 0.02 to 0.11 with increasing environmental gradient. Lower correlations among the sire classifications were obtained in comparison with HRNM1s in environments with low and high management, confirming the presence of genotype x environment interactions. Conclusion: We recommend a wider application of genetic evaluation in buffalo aimed at identifying optimal genotypes within specific environments.

Abstract Coronaviruses silently circulate in human and animal populations, causing mild to severe diseases. Therefore, livestock are important components of a “One Health” perspective aimed to control these viral infections. However, at present there is no example that considers pig genetic resources in this context. In this study, we investigated the variability of four genes (ACE2, ANPEP and DPP4 encoding for host receptors of the viral spike proteins and TMPRSS2 encoding for a host proteinase) in 23 European (19 autochthonous and three commercial breeds and one wild boar population) and two Asian Sus scrofa populations. A total of 2229 variants were identified in the four candidate genes: 26% of them were not previously described; 29 variants affected the protein sequence and might potentially interact with the infection mechanisms. The results coming from this work are a first step towards a “One Health” perspective that should consider conservation programs of pig genetic resources with twofold objectives: (i) genetic resources could be reservoirs of host gene variability useful to design selection programs to increase resistance to coronaviruses; (ii) the described variability in genes involved in coronavirus infections across many different pig populations might be part of a risk assessment including pig genetic resources.

Growth performance and meat quality traits of 24 Massese suckling lambs reared up to 69 days of age in different farming systems were evaluated. Three groups were considered: stall (S) reared indoors and fed concentrate and hay; pasture (P) reared outdoor and fed pasture and hay; semi free-range (F) reared indoors during the night and at pasture during the day, fed concentrate, hay and herbage. The lambs remained constantly with their dams for the whole period, having thus always access to mothers’ milk. Animals weights were recorded, and, after slaughtering, carcase traits were considered. Fatty acids composition and chemical/physical parameters of milk and meat were analysed. Lambs growth was similar in the first 30 days, while afterwards differences emerged: P lambs recorded the worst values reaching slaughter weight of 14.6 kg versus 22.3 and 22.7 of the S and the F group, respectively. Carcase of P lambs resulted less fat and with a lower lean/bone ratio than the other groups (1.8, 2.1 and 2.3 for P, S and F, respectively). Fatty acids composition of ewes’ milk had effect on lambs’ meat profile, probably because they continued to suck milk until slaughter. Moreover, also farming system affected fatty acids profile of lambs’ meat: grazing animals, especially P, showed the highest PUFA and the lowest SFA percentage and P meat showed the best composition for human health. As regards physical traits, F meat was more coloured than P and S meat, while P meat was less tender than others.Highlights Two-month-old Massese lamb is a marketable product. Suckled milk affected lambs’ meat composition also at later ages. Pasture in lambs’ diet increases PUFA content in the meat.

Limousine and Charolais cattle breeds are assuming increasing importance in the Italian beef cattle sector. Indeed, both breeds are involved in a national rural development project. The success of a breeding programme depends heavily not only on the defined breeding objective but also on the selected criteria used to attain it. Data from the Charolais and Limousine Italian Association (born between 1960 and 2017) were used to estimate both genetic parameters and trends for calving interval (CI) and age at first calving (AFC) and genetic diversity. Population structures were investigated through probabilities of gene origin approach whereas variance components estimation was used to obtain breeding values of reproductive parameters. Heritabilities for AFC and CI were 0.24 and 0.03 for Limousine and 0.32 and 0.02 for Charolais, respectively. An increasing genetic trend was observed for AFC. For CI, no significant gains of genetic origin have been verified. In both breeds, pedigree completeness was moderate, and the observed inbreeding coefficient was low. No herd is classified as a nucleus or isolated and they all use external bulls. Heritability for AFC in both breeds suggests possible improvements when selected. Limited improvements are expected for CI by means of a traditional genetic breeding scheme. A reduction in the generation interval might represent a cost-effective solution to increase annual genetic gain. Pedigree analysis suggests population bottleneck in both breeds.HIGHLIGHTS Limousine and Charolais breeds are involved in the national project for the genetic improvement of cattle populations raised in Italy. Genetic indexes will be developed following a genomic approach. This study is preparatory for the implementation of a selective programme of this type. The breeds presented a reduced number of animals in the genetic formation. High ‘bottleneck effect’. Moderate heritability for age at first calving.

Abstract Background Natural and artificial directional selection in cosmopolitan and autochthonous pig breeds and wild boars have shaped their genomes and resulted in a reservoir of animal genetic diversity. Signatures of selection are the result of these selection events that have contributed to the adaptation of breeds to different environments and production systems. In this study, we analysed the genome variability of 19 European autochthonous pig breeds (Alentejana, Bísara, Majorcan Black, Basque, Gascon, Apulo-Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda, Krškopolje pig, Black Slavonian, Turopolje, Moravka, Swallow-Bellied Mangalitsa, Schwäbisch-Hällisches Schwein, Lithuanian indigenous wattle and Lithuanian White old type) from nine countries, three European commercial breeds (Italian Large White, Italian Landrace and Italian Duroc), and European wild boars, by mining whole-genome sequencing data obtained by using a DNA-pool sequencing approach. Signatures of selection were identified by using a single-breed approach with two statistics [within-breed pooled heterozygosity (HP) and fixation index (FST)] and group-based FST approaches, which compare groups of breeds defined according to external traits and use/specialization/type. Results We detected more than 22 million single nucleotide polymorphisms (SNPs) across the 23 compared populations and identified 359 chromosome regions showing signatures of selection. These regions harbour genes that are already known or new genes that are under selection and relevant for the domestication process in this species, and that affect several morphological and physiological traits (e.g. coat colours and patterns, body size, number of vertebrae and teats, ear size and conformation, reproductive traits, growth and fat deposition traits). Wild boar related signatures of selection were detected across all the genome of several autochthonous breeds, which suggests that crossbreeding (accidental or deliberate) occurred with wild boars. Conclusions Our findings provide a catalogue of genetic variants of many European pig populations and identify genome regions that can explain, at least in part, the phenotypic diversity of these genetic resources.

Soybean is one of the most expensive and limiting feed ingredients in diet formulations; however, in pig farming, it represents the main source of protein. The production and supply of soybean are critical steps due to their environmental impact and feed/food competition for land use. Therefore, research is focusing on finding alternatives to replace soybean partially or totally. However, alternative ingredients should ensure similar growth performance, carcass traits, and meat quality characteristics compared to conventional soybean-based diets. The objective of this review was to evaluate the impact of different alternative protein sources to soybean in pig nutrition and their effects on growth performance, carcass, and meat quality traits. The review process was performed on Scopus®, and it considered research findings published from 2012 to the present on the Sus scrofa species. Articles without a control group fed with soybean were discarded. The main alternative protein sources identified were other legumes and distillers’ dried grain with solubles (fish and animal proteins, oilseed by- and co-products). Interesting innovative protein sources included by-products from other industries (residues), microalgae and insects. Nevertheless, in dietary formulations, close attention must be paid to address the nutritional requirements, balance the supply of amino acids, avoid anti-nutritional or toxic compounds occasionally present in alternative protein sources, as well as determine the availability of protein feed in specific geographical areas.

Fresh samples of Longissimus thoracis of Charolais (n = 12), Romagnola (n = 15), Limousine (n = 77), and crossbreed (n = 62) animals were evaluated with different storage periods (0, 4, 9, and 14 days). Proximate analysis (i.e., pH, humidity, color, free water content, and physical parameters) was performed for each sample. The data obtained were evaluated with a mixed model, setting 5 fixed effects (breed, storage time, animals age, EUROP conformation, number of animal transports) and the animal as random. The results demonstrated that meat quality was affected mainly by the wet ageing period and that the visual and tactile parameters were also found to be susceptible to the storage time. The conservation entailed a decrease in meat humidity and an increase in L* and b* traits; it also led to a decrease in the hardness of the sample, in turn affecting the other texture profile analysis parameters considered. Fixed effects affected in different ways the traits analyzed i.e., pH and humidity changed with breed, as well as with EUROP classification, animals’ age for some TPA parameters, and the number of animal transports for both visual and tactile parameters. Wet ageing influenced the meat quality, often improving it, confirming how important further research would be to identify precise storage times in relation to the parameters studied.

The selection of animals with lower production costs can be achieved by using feed efficiency and growth curve information. Kleiber ratio (KR) is an alternative option for discriminating against the animals that have the greatest weight gain about their final weight. Alternative feed efficiency and growth curves for ostriches of the African Black (AB) and Red Neck (RN) breeds and their crossbreeds (CB) were investigated using KR and Gompertz equation. Univariate and multivariate analyses were used. The highest adult weight was identified in the RN and CB. AB was more precocious than the RN and CB individuals. Only AB animals reached 75% of their mature weight at one year of age. At 180 days, AB showed better KR. AB was different from the others, mainly for KR at 90 days and 180 days. Considering multivariate analysis, AB animals were different from the others, regardless of sex, mainly for KR at 90 days and KR at 180 days. Other subgroups separated the animals by sex. In a market preferring animals of minor structure (smaller cuts) and greater precocity, it would be suitable to opt for AB. When animals with greater body structure (larger cuts) are desired, males RN and CR is the best option, however, it will be slaughtered with greater age and lower value for KR (may generate a bigger production cost ). It is possible to obtain animals with precocity and high KR, being well represented by the AB breed.

This study aimed to compare the grazing behaviour of two pig genetic types, Cinta Senese (CS) and its crossbreed with Large White (LW x CS), farmed in natural rearing system in Tuscany, as influenced by diurnal time slot and by the season of the year. In situ direct observations on two herds of grazing pigs were conducted during daylight hours for five consecutive days and repeated bimonthly for a period of one year. The observations were grouped into three diurnal time slots and the relative frequencies of the main activities were obtained. Data were subjected to ANOVA with genetic type, diurnal time slot and month as fixed effects. The results, valid for the genotypes and the specific rearing system considered, highlighted that pigs displayed species-specific foraging behaviours for a long time and showed very low levels of other behaviours as aggressive or stereotypes. Both genotypes spent about 72% of the daylight hours for feeding, mainly dedicated to grass feeding. Nevertheless, CS pigs devoted less time to grazing pasture respect to LWxCS. Throughout the months, grazing was preferred to rooting, especially when herbaceous resources were more available. The proportion of diurnal time dedicated to feeding by pigs was reduced with the hot season, but CS seems more affected compared to LWxCS.

The aim of this work was to determine the chemical, physical and sensorial characteristics of a cured product called ‘Cuore di Spalla’, resulting from two different pig genotypes (G) and two salting times (S). Fourteen Duroc × Large White (D × LW) and 14 Cinta Senese × Large White (CS × LW), reared in the same condition in outdoor and fed commercial mixture. The animals were slaughtered at 10 months of age which corresponds to an average live weight of 143 ± 15 kg for D × LW and 122 ± 15 kg for CS × LW. The right shoulders were salted for 3 days (L) and the left ones for 5 days (H). Physical (colour, texture profile analysis), chemical (moisture; crude protein; IMF; ash; salt; total lipids; fatty acids) and sensorial analyses (by panellists’ group) as well as volatile compounds profile (by SPME-GC-MS technique) were determined at the end of seasoning period. The genotype affected product’s size (1484.3 vs 1857.1 g of final weight for CS × LW and D × LW respectively), chemical characteristics and texture (cohesiveness 0.50 vs 0.53 and springiness 6.73 vs 7.12 for CS × LW and D × LW respectively). Aromatic profile was less affected by the factors considered or at least the panellists were not able to discriminate the effect. The main family of volatile compounds affected by genotype was alcohols. Salting time seemed to affect only the parameters closely related to salt (16.52 vs 15.33% of salt and 5.15 vs 4.35 for saltiness in H vs L respectively).Highlights The genotypes determined differences in size, fat quantity and physical-chemical parameters of the ‘Cuore di Spalla’ product. Very limited differences in the aromatic profile were found. Both salting times led to high salt content in the product. It seems feasible to produce the ‘Cuore di Spalla’ with further reduction of salting times.

This study evaluates the potential of Fourier-Transform Near Infrared Spectroscopy (FT-NIRS) to estimate the chemical composition of fresh natural pastures of Tuscany without previous drying and grinding. Chemical composition of herbage samples is determined by applying usual chemistry. FT-NIRS calibration and cross-validation were developed applying spectra pre-treatment and two statistical models: partial least square regression and principal component regression. The results are evaluated in terms of coefficients of determination (R2), root mean square error (RMSE) and residual prediction deviation (RPD). Calibration results, using partial least square models, obtained a R2 in calibration greater than 0.95 for dry matter and crude protein, intermediate values (>0.75) for the fibre fraction and lower results for ash and crude fat (

Aim of study: Sports involving horses have notable financial importance. Breeds are evaluated to find the best-suited ones for a specific sport category. Phenotypic diversity using biometric markers was evaluated for Quarter Horse (QH), Arabic (AR), English Thoroughbred (ET), and Brazilian Equestrian (BE) horse breeds. Area of study: Mato Grosso do Sul-Brazil. Material and methods: Lengths, widths, and circumference measures of 268 horses were collected. These measures were used to estimate conformation indexes. The size-free canonical discriminant analysis was used to remove the size effect on the animal's shape. The similarity among breeds (by sex) was evaluated employing multivariate analysis (canonical analysis, MANOVA, principal components, Euclidean distances, and grouping through complete linkage), considering all linear measures and conformation indexes (included in the analysis of principal components). Main results: Four canonical variables (CANs), each one representing an equation to interpret the morpho-functionality of breeds “sustentation”, “structure”, “frame”, and “equilibrium”, were retained. The breeds presented differences when the CANs were simultaneously considered. Differences mainly were the size and the thickness of the body as well as the ability of the animal to move. ET, QH, and BE demonstrate a well-defined biometric profile. These three breeds clustered separately from AR breed. Research highlights: Canonical variables allow to verify the functional aptitudes since the responses were close to conformation indices commonly used as horse skill estimators. The implementation of these variables as selection criteria in horse breeding programs require further studies in larger populations of horses for a confirmation of the present results.

The objective of this study was to investigate the genetic diversity of the Garfagnina (GRF) goat, a breed that currently risks extinction. For this purpose, 48 goats were genotyped with the Illumina CaprineSNP50 BeadChip and analyzed together with 214 goats belonging to 9 other Italian breeds (~25 goats/breed), whose genotypes were available from the AdaptMap project [Argentata (ARG), Bionda dell'Adamello (BIO), Ciociara Grigia (CCG), Di Teramo (DIT), Garganica (GAR), Girgentana (GGT), Orobica (ORO), Valdostana (VAL) and Valpassiria (VSS)]. Comparative analyses were conducted on i) runs of homozygosity (ROH), ii) admixture ancestries and iii) the accuracy of breed traceability via discriminant analysis on principal components (DAPC) based on cross-validation. ROH analyses was used to assess the genetic diversity of GRF, while admixture and DAPC to evaluate its relationship to the other breeds. For GRF, common ROH (more than 45% in GRF samples) was detected on CHR 12 at, roughly 50.25-50.94Mbp (ARS1 assembly), which spans the CENPJ (centromere protein) and IL17D (interleukin 17D) genes. The same area of common ROH was also present in DIT, while a broader region (~49.25-51.94Mbp) was shared among the ARG, CCG, and GGT. Admixture analysis revealed a small region of common ancestry from GRF shared by BIO, VSS, ARG and CCG breeds. The DAPC model yielded 100% assignment success for GRF. Overall, our results support the identification of GRF as a distinct native Italian goat breed. This work can contribute to planning conservation programmes to save GRF from extinction and will improve the understanding of the socio-agro-economic factors related with the farming of GRF.

In the present study, GeneSeek GGP-LDv4 33k single nucleotide polymorphism chip was used to detect runs of homozygosity (ROH) in eight Italian beef cattle breeds, six breeds with distribution limited to Tuscany (Calvana, Mucca Pisana, Pontremolese) or Sardinia (Sarda, Sardo Bruna and Sardo Modicana) and two cosmopolitan breeds (Charolais and Limousine). ROH detection analyses were used to estimate autozygosity and inbreeding and to identify genomic regions with high frequency of ROH, which might reflect selection signatures. Comparative analysis among breeds revealed differences in length and distribution of ROH and inbreeding levels. The Charolais, Limousine, Sarda, and Sardo Bruna breeds were found to have a high frequency of short ROH (~ 15.000); Calvana and Mucca Pisana presented also runs longer than 16 Mbp. The highest level of average genomic inbreeding was observed in Tuscan breeds, around 0.3, while Sardinian and cosmopolitan breeds showed values around 0.2. The population structure and genetic distances were analyzed through principal component and multidimensional scaling analyses, and resulted in a clear separation among the breeds, with clusters related to productive purposes. The frequency of ROH occurrence revealed eight breed-specific genomic regions where genes of potential selective and conservative interest are located (e.g. MYOG, CHI3L1, CHIT1 (BTA16), TIMELESS, APOF, OR10P1, OR6C4, OR2AP1, OR6C2, OR6C68, CACNG2 (BTA5), COL5A2 and COL3A1 (BTA2)). In all breeds, we found the largest proportion of homozygous by descent segments to be those that represent inbreeding events that occurred around 32 generations ago, with Tuscan breeds also having a significant proportion of segments relating to more recent inbreeding.

The study investigated the relationship between the temperature humidity index (THI) and the behaviour of 24 young fattening Limousin bulls reared in two farms in Tuscany, Italy. In each farm, six animals were undergone to ceiling fans (switched on at THI values up to 72), and six animals represented the control group. The trial lasted three days for two consecutive weeks in August 2020. Behavioural observations were conducted using scan sampling technique and eating, ruminating, drinking, resting and other social activities were registered every 5 min, from 9.30 am to 4.00 pm. Two different microclimatic conditions were evaluated to assess the effect of the ventilation system: normal (THI < 78) and alert (THI ≥ 78) conditions. Results showed that the ventilation system had significant effects increasing inactivity and lying down compared to control groups and decreasing eating and drinking activities. THI alert condition caused a significant decrease in eating and an increase in lying down behaviours. Ventilation system did not influence the animals’ cleanliness. The ceiling fans’ efficiency in changing the behaviour of young fattening bulls was demonstrated but further studies are needed to assess the ventilation system effects, especially during longer heat stress periods.

Abstract Background In the last 50 years, the diversity of cattle breeds has experienced a severe contraction. However, in spite of the growing diffusion of cosmopolite specialized breeds, several local cattle breeds are still farmed in Italy. Genetic characterization of breeds represents an essential step to guide decisions in the management of farm animal genetic resources. The aim of this work was to provide a high-resolution representation of the genome-wide diversity and population structure of Italian local cattle breeds using a medium-density single nucleotide polymorphism (SNP) array. Results After quality control filtering, the dataset included 31,013 SNPs for 800 samples from 32 breeds. Our results on the genetic diversity of these breeds agree largely with their recorded history. We observed a low level of genetic diversity, which together with the small size of the effective populations, confirmed that several breeds are threatened with extinction. According to the analysis of runs of homozygosity, evidence of recent inbreeding was strong in some local breeds, such as Garfagnina, Mucca Pisana and Pontremolese. Patterns of genetic differentiation, shared ancestry, admixture events, and the phylogenetic tree, all suggest the presence of gene flow, in particular among breeds that originate from the same geographical area, such as the Sicilian breeds. In spite of the complex admixture events that most Italian cattle breeds have experienced, they have preserved distinctive characteristics and can be clearly discriminated, which is probably due to differences in genetic origin, environment, genetic isolation and inbreeding. Conclusions This study is the first exhaustive genome-wide analysis of the diversity of Italian cattle breeds. The results are of significant importance because they will help design and implement conservation strategies. Indeed, efforts to maintain genetic diversity in these breeds are needed. Improvement of systems to record and monitor inbreeding in these breeds may contribute to their in situ conservation and, in view of this, the availability of genomic data is a fundamental resource.

This study investigated the effect of season on the endocrine and adaptive profiles of a Brazilian Creole goat population in a semi-arid region of Brazil during the dry and the rainy season. We considered physiological, morphological, biochemical, haematological, hormonal and anatomical profiles. The experiment used 80 adult goats (2- to 5-year-old) and lactating (160 ± 14 days of lactation length) goats, with an average daily milk yield of 500.9 ± 13 g. Physiological parameters (rectal temperature, RT; respiratory rate, RR; heart rate, HR; skin temperature, ST) were high (p

This review aimed to present the current status of the studies about the role of physiological, hematological, biochemical and hormonal variables on the blood of goats raised in adverse environments. Scientific work in recent years has allowed for the evaluation of how goats of distinct breeds react to edaphoclimatic effects to maintain homeothermy according to adaptability to the environment. The exposure of goats to heat stress causes changes in the physiological functions with impact on production and productivity of the animals. There is evidence that the central nervous system is sensitive to temperature changes, and some cells are agiler in the cold than in heat. In conclusion, we say that regardless of the breed, the raising environment and its climatic variables can trigger physiological, biochemical, hematological and hormonal alterations that result in a reduction of the heat production for maintenance of homeothermy. All these changes have a substantial impact on production and productivity.

This study evaluates the potential of Fourier transformation near-infrared reflectance spectroscopy to estimate the nutritional value and the chemical composition of natural pastures. Variability from all samples of pastures available is considered in order to assess the applicability of the calibration models in the future predictions. Chemical components (dry matter, crude protein, ash, ether extract, crude fibre, fibrous fractions) of grass samples were determined by applying official methods, and milk and meat forage units were calculated. Calibration and validation models were developed between chemical–nutritional parameters and NIRS spectral data using partial least square regression (PLS). The capacity of methods has been achieved using two validation approaches: the first using an independent dataset for prediction and the second by cross-validation process. The results are evaluated in term of coefficient of determination, root-mean-square error and residual prediction deviation. Despite the wide variability of the data set, the results of FT-NIRS have been able to estimate the chemical composition of natural and naturalised pasture with good accuracy and precision, while for nutritional value parameters, a further evaluation may be useful.

Near-infrared spectroscopy (NIRS) and closed spectroscopy methods have been applied to analyse the quality of forage and animal feed. However, grasslands are linked to variability factors (e.g., site, year, occurring species, etc.) which restrict the prediction capacity of the NIRS. The aim of this study is to test the Fourier transform NIRS application in order to determine the chemical characteristics of fresh, undried and unground samples of grassland located in north-central Apennine. The results indicated the success of FT-NIRS models for dry matter (DM), crude protein (CP), acid detergent fibre (ADF), neutral detergent fibre (NDF) and acid detergent lignin (ADL) on fresh grassland samples (R2 > 0.90, in validation). The model can be used to quantitatively determine CP and ADF (residual prediction deviation-RPD > 3 and range error ratio- RER > 10), followed by DM and NDF that maintain a RER > 10, and are sufficient for screening for the lignin fraction (RPD = 2.4 and RER = 8.8). On the contrary, models for both lipid and ash seem not to be usable at a practical level. The success of FT-NIRS quantification for the main chemical parameters is promising from the practical point of view considering both the absence of samples preparation and the importance of these parameters for diet formulation.

Soybean meal is the most important protein source in beef cattle feeding. The research of alternative protein sources to replace soy use, avoiding negative effects on in vivo performance and on the product’s quality, is an important issue. In this context, cardoon represents a non-OGM resilient crop that can be cultivated in marginal lands for extracting its seed oil (utilized for biodiesel and biodegradable bioplastic production) and whose and the residual meal from its seed oil (utilized for biodiesel and biodegradable bioplastic production) could be a suitable by-product for animal feeding, due to its fairly high protein content. The aim of this study was to evaluate the feasibility of using cardoon meal as an innovative protein source during the Limousine bulls’ fattening period. Thirty-two bulls were divided into two groups and fed with a diet containing soybean meal (SG) or partially replacing soybean meal with cardoon meal as a protein source (CG), respectively. The feeding trial lasted about 11 months. Growth performances and meat physical–chemical traits were evaluated. No statistical differences in feed efficiency, average daily gain, or in the main meat quality indicators, as well as in fatty acid profiles were found among the groups. Therefore, cardoon meal could be considered as an alternative to soybean meal in fattening Limousine bulls in order to enhance the sustainability of the farming system.

Lipoptena fortisetosa and L. cervi are hematophagous ectoparasites belonging to the Hippoboscidae family and preferentially living on cervids. In recent years, they have received specific attention due to the great increase in the abundance of their host species, and to their medical and veterinary importance as possible vectors of pathogens harmful to humans and animals. The aim of this study was to investigate the parasitism level of both of these flies on their main hosts in Italy, which are red deer, fallow deer, and roe deer, and to highlight a possible preference for a species, sex, or age class among the hosts. Deer keds were collected by examining 326 cervids hunted in the Tuscan-Emilian Apennines. Outcomes showed that L. fortisetosa has greatly spread throughout the study area, where it competes with the autochthonous L. cervi. Moreover, red deer was the favored host species of both ectoparasites, while different preferences for host sex and age classes were observed in the two hippoboscids. The regular monitoring of deer ked populations, especially the allochthonous L. fortisetosa, which is continuously spreading in Europe, is recommended to expand the knowledge on these parasitic species that are potentially dangerous to public health.

During ham processing the action of endogenous proteolytic and lipolytic enzymes leads to the development of volatile compounds (VOCs) responsible of typical aromas. Protected Designation of Origin (PDO) of Toscano ham requires at least 12 months of ripening but extended seasoning might improve flavor and economic value. This study aimed at assessing the evolution of color, fatty acids, and VOCs profile in subcutaneous fat, and, among VOCs, at identifying possible markers characterizing different seasoning length. For this purpose, a reduced pool of VOCs was selected by 3 multivariate statistical techniques (stepwise discriminant analysis, canonical discriminant analysis and discriminant analysis) to classify hams according to ripening (

The Garfagnina goat is an endangered native goat population from Italy. This study aims to give a contribution to the milk quality assessment of the native goat during the two productive seasons, spring and summer, and to verify the relationships between some meteorological data and physiological and milk quality parameters. Individual milk samples were taken in the two seasons. Physiological parameters and meteorological data were also registered. All the milk samples were measured for volume and analysed for: dry matter, total nitrogen, casein, ash, lactose, fat, milk fatty acid (FA) composition, number and diameter of the fat globules, and rheological parameters. There were not differences in the average diameter of the milk fat globules (2.27 ± 0.28 μm) and in milk gross composition between the two seasons, except for lactose which was significantly lower in summer. During summer a significant increase in some long-chain FAs such as CLA c9,t11, C18:1 t11, C18:0, C18:3 n3, C20:0, C22:0, C22:2 was observed, whereas short-chain FAs (C6:0, C8:0, C10:0), which are responsible for the development of unpleasant aromas, as well as monounsaturated C16:1, C17:1 c9, C20:1, C22:1 and polyunsaturated FAs C20:2, C20:3 n3 decreased. The average PUFA n6/PUFA n3 ratio was 1.7 and the lowest values were recorded in summer. In summer a worsening of the clot, which was less firm, was found. Environmental parameters were found to be linked to the milk FAs, while heart rate and skin temperature were negatively linked to milk yield and lactose, respectively.

Morphometric studies on European red deer (Cervus elaphus L.) living in sub-Mediterranean areas are rare. In this paper, we provide the first morphometric description of red deer from Apennine living in Prato Province, as well as a description of its skeletal growth pattern. We analysed 18 body, cranial and antler measurements from 905 deer carcasses, collected during 12 hunting seasons (2000–2012). The body size of red deer from Prato appeared comparable to that of other populations from Northern Apennine and Central Alps. A significant variation in weight during the hunting season was detected only in adult stags: they were estimated to lose 23% of their eviscerated body weight from the beginning of the rutting season until the end of winter. The relationship between eviscerated body weight (EW) and whole body weight (WW) was highly significant in both sexes within every age class (R2 always higher than 0.75), thus linear regressions were assessed in order to estimate EW from WW, allowing to complete datasets when such information is missing. Growth equations were utilised to describe the development of a subset of skeletal measures (height at shoulder, hind foot length, mandible length, head–trunk length) commonly collected on hunted cervids. Hind foot length was the measure which first ceased to grow and with the highest growth constant; although the relationship between cohort hind foot length and environmental, climatic and demographic variables has to be tested for red deer from Apennine, these bones appeared a suitable biological indicator for long-term monitoring of the species.

Autochthonous pig breeds provide products of differentiated quality, among which quality control is difficult to perform and insufficient for current market requirements. The present research evaluates the predictive ability of near-infrared (NIR) spectroscopy, combined with chemometric methods as a rapid and affordable tool to assure traceability and quality control. Thus, NIR technology was assessed for intact and minced muscle Longissimus thoracis et lumborum samples collected from 12 European autochthonous pig breeds for the quantification of lipid content and fatty acid composition. Different tests were performed using different numbers of samples for calibration and validation. The best predictive ability was found using minced presentation and set with 80% of the samples for the calibration and the remaining 20% for the external validation test for the following traits: lipid content and saturated and polyunsaturated fatty acids, which attained both the highest determination coefficients (0.89, 0.61, and 0.65, respectively) and the lowest root mean square errors in external validation (0.62, 1.82, and 1.36, respectively). Lower predictive ability was observed for intact muscles. These results could contribute to improve the management of autochthonous breeds and to ensure quality of their products by traditional meat industry chains.

The objective was to investigate the pattern of linkage disequilibrium (LD) in three local beef breeds, namely, Calvana (n = 174), Mucca Pisana (n = 270), and Pontremolese (n = 44). As a control group, samples of the Italian Limousin breed (n = 100) were used. All cattle were genotyped with the GeneSeek GGP-LDv4 33k SNP chip containing 30,111 SNPs. The genotype quality control for each breed was conducted separately, and SNPs with call rate < 0.95 and minor allele frequency (MAF) > 1% were used for the analysis. LD extent was estimated in PLINK v1.9 using the squared correlation between pairs of loci (r2) across autosomes. Moreover, r2 values were used to calculate historical and contemporary effective population size (Ne) in each breed. Average r2 was similar in Calvana and Mucca Pisana (~0.14) and higher in Pontremolese (0.17); Limousin presented the lowest LD extent (0.07). LD up to 0.11–0.15 was persistent in the local breeds up to 0.75 Mbp, while in Limousin, it showed a more rapid decay. Variation of different LD levels across autosomes was observed in all the breeds. The results demonstrated a rapid decrease in Ne across generations for local breeds, and the contemporary population size observed in the local breeds, ranging from 41.7 in Calvana to 17 in Pontremolese, underlined the demographic alarming situation.

Marker-assisted selection based on fast and accurate molecular analysis of individual genes is considered an acceptable tool in the speed-up of the genetic improvement of production performance in chickens. The objective of this study was to detect the single nucleotide polymorphisms (SNPs) in the IGF1, IGFBP2 and TGFß3 genes, and to investigate their associations with growth performance (body weight (BW) and average daily gain (ADG) at 14, 21, 28, 35 and 42 days of age) and carcass traits in broilers. Performance (carcass) data (weight before slaughter; weights of the trunk, giblets, abdominal fat, breast muscle and thigh muscle; slaughter value and slaughter percentage), as well as blood samples for DNA extraction and SNP analysis, were obtained from 97 chickens belonging to two different lines (Hubbard F15 and Cobb E) equally divided between the two sexes. The genotypes were detected using polymerase chain reaction- restriction fragment length polymorphism (PCR-RFLP) methods with specific primers and restrictase for each gene. The statistical analysis discovered significant associations (p < 0.05) between the TGFβ3 SNP and the following parameters: BW at 21, 28 and 35 days, trunk weight and slaughter value. Association analysis of BWs (at 21, 28 and 35 days) and SNPs was always significant for codominant, dominant and overdominant genetic models, showing a possible path for genomic selection in these chicken lines. Slaughter value was significant for codominant, recessive and overdominant patterns, whereas other carcass traits were not influenced by SNPs. Based on the results of this study, we suggested that the TGFβ3 gene could be used as a candidate gene marker for chicken growth traits in the Hubbard F15 and Cobb E population selection programs, whereas for carcass traits further investigation is needed.

ABSTRACT The objective of this study was to evaluate the morphology and biometrics of female Amiata donkeys reared in four different areas of southern Tuscany, Italy, to determine the differentiation degree of animals. Four southern Tuscan areas were investigated: two mountainous zones (East and West Amiata) and two flatter areas (Coastal area and Siena surrounding). Morphology and biometrics of adult female Amiata donkeys were collected to determine the homogeneity of the population. Primitive coat markings typical of the breed (shoulder and leg stripes) were found in Amiata donkey. Jennets from Siena surrounding were more dolichomorphic, while West Amiata individuals were smaller. The Principal Component Analysis and the Discriminant Analysis separated the Siena surrounding jennets from the other populations. This result was confirmed through the heatmap representation. The biometrics found in this research confirm that Amiata donkey is a small-medium sized breed suitable for different purposes.

The aim of this work was to analyse the distribution of causal and candidate mutations associated to relevant productive traits in twenty local European pig breeds. Also, the potential of the SNP panel employed for elucidating the genetic structure and relationships among breeds was evaluated. Most relevant genes and mutations associated with pig morphological, productive, meat quality, reproductive and disease resistance traits were prioritized and analyzed in a maximum of 47 blood samples from each of the breeds (Alentejana, Apulo-Calabrese, Basque, Bísara, Majorcan Black, Black Slavonian (Crna slavonska), Casertana, Cinta Senese, Gascon, Iberian, Krškopolje (Krškopoljski), Lithuanian indigenous wattle, Lithuanian White Old Type, Mora Romagnola, Moravka, Nero Siciliano, Sarda, Schwäbisch-Hällisches Schwein (Swabian Hall pig), Swallow-Bellied Mangalitsa and Turopolje). We successfully analyzed allelic variation in 39 polymorphisms, located in 33 candidate genes. Results provide relevant information regarding genetic diversity and segregation of SNPs associated to production and quality traits. Coat color and morphological trait-genes that show low level of segregation, and fixed SNPs may be useful for traceability. On the other hand, we detected SNPs which may be useful for association studies as well as breeding programs. For instance, we observed predominance of alleles that might be unfavorable for disease resistance and boar taint in most breeds and segregation of many alleles involved in meat quality, fatness and growth traits. Overall, these findings provide a detailed catalogue of segregating candidate SNPs in 20 European local pig breeds that may be useful for traceability purposes, for association studies and for breeding schemes. Population genetic analyses based on these candidate genes are able to uncover some clues regarding the hidden genetic substructure of these populations, as the extreme genetic closeness between Iberian and Alentejana breeds and an uneven admixture of the breeds studied. The results are in agreement with available knowledge regarding breed history and management, although largest panels of neutral markers should be employed to get a deeper understanding of the population's structure and relationships.

The aim was to investigate the population structure of eight beef breeds: three local Tuscan breeds under extinction, Calvana (CAL), Mucca Pisana (MUP), and Pontremolese (PON); three local unselected breeds reared in Sardinia, Sarda (SAR), Sardo Bruna (SAB), and Sardo Modicana (SAM); and two cosmopolitan breeds, Charolais (CHA) and Limousine (LIM), reared in the same regions. An effective population size ranges between 14.62 (PON) to 39.79 (SAM) in local breeds, 90.29 for CHA, and 135.65 for LIM. The average inbreeding coefficients were higher in Tuscan breeds (7.25%, 5.10%, and 3.64% for MUP, CAL, and PON, respectively) compared to the Sardinian breeds (1.23%, 1.66%, and 1.90% in SAB, SAM, and SAR, respectively), while for CHA and LIM they were

In lean genotypes, protein restriction during growing increases intramuscular fat content without affecting the overall carcass fatness. The present study aims to assess the feasibility of applying this feeding management on an obese pig, the Cinta Senese, since obese genotypes are characterized by great lipogenic potential often leading to excessively high backfat deposits. Twenty pigs of average weight 38 kg, were divided in two groups, the first group was fed a protein restricted diet (9% of crude protein), while the second one a normal diet (13.5% of crude protein). During finishing, both groups were fed the same diet (10% of crude protein). Average daily gain, protein conversion index, backfat thickness, carcass weight, and prime cuts were determined. A loin sample joint was dissected in intermuscular fat, bone, subcutaneous fat, longissimus lumborum, and psoas major. On longissimus lumborum, physical and chemical analysis was carried out. The fatty acid profile of longissimus lumborum and loin subcutaneous fat were determined. Data were analyzed by analysis of variance. Protein conversion index resulted lower in the restricted group, while backfat was slightly greater. Meat quality traits were not affected by feeding management. Slightly modifications in subcutaneous outer layer fatty acids profile were observed. The protein restriction during growing did not seem a suitable mode of feeding management for Cinta Senese pigs.

O objetivo deste trabalho foi estudar a estrutura genética populacional de bubalinos da raça Mediterrâneo, em quatros rebanhos, no Brasil. Foram utilizados dados de pedigree de 6.588 bubalinos da raça Mediterrâneo nascidos no período de 1980 a 2002. Do total de animais estudados, 60,5; 15,3 e 2,1% possuíam pedigree na primeira, segunda e terceira ascendência, respectivamente. O número efetivo de rebanhos que forneceram machos reprodutores foi de 1,60 para pais; 1,16 para avôs e 1,00 para bisavôs. O número de animais fundadores foi 923 e o número efetivo de fundadores foi apenas 71. O número efetivo de ancestrais que explicaram a variabilidade genética da população foi de 71 e somente 30 ancestrais explicaram 50% da variabilidade genética da população. Os coeficientes médios de relação (CR) entre os indivíduos da população e de endogamia (F) foram estimados em 0,37 e 0,34%, respectivamente. A estimativa média do intervalo de gerações foi de 8,71±2,85 anos. A variabilidade da população atual é fruto da contribuição de poucos ancestrais, que são, na sua maioria, também fundadores, evidenciando que a população se desenvolveu a partir de uma base genética estreita, o que caracteriza a ocorrência do efeito fundador.The objective of this research was to study the population genetic structure of four herds of Mediterranean buffaloes in Brazil. It was used pedigree data from 6,588 buffaloes of Mediterranean breed born from 1980 to 2002. Of the total number of animals studied, 60.5, 15.3 and 2.1% had a pedigree in the first, second and third ascendancy, respectively. The effective number of herds that provided breeding males was 1.60 for parents, 1.16 for grandparents and 1.00 for great-grandparents. There were 923 founder animals and only 71 effective founders. The effective number of ancestors explaining the genetic variability of the population was 71 and only 30 ancestors accounted for 50% of the genetic variability of the population. The average relatedness coefficient (AR) between individuals and inbreeding (F) of the population were estimated at 0.37 and 0.34% respectively. The average estimate of generation interval was 8.71±2.85 years. The variability of the current population is the result of a few ancestors, who are mostly also founders showing that the population was developed from a narrow genetic base which characterizes the occurrence of founder effect.

The objective of this work was to evaluate the population structure and the genetic and phenotypic progress of Nelore cattle in Northern Brazil. Pedigree information concerning animals born between 1942 and 2006 were analyzed. Population structure was performed using the Endog program. Out of the 140,628 animals studied, 67.7, 14.52 and 3.18% had complete pedigree record of the first, second and third parental generation, respectively. Inbreeding and average relatedness coefficients were low: 0.2 and 0.13%, respectively. However, these parameters may have been underestimated, since information on pedigree was incomplete. The effective number of founders was 370 and the genetic contribution of 10, 50 and 448 most influent ancestors explained 13.2, 28 and 50% of the genetic variability in the population, respectively. The genetic variability for growth traits and population structure demonstrates high probability of increasing productivity through selective breeding. Moreover, management strategies to reduce the currently observed age at first calving and generation intervals are important for Nelore cattle genetic improvement.O objetivo deste trabalho foi avaliar a estrutura populacional e o progresso genético e fenotípico da raça Nelore na Região Norte do Brasil. Informações sobre o pedigree foram analisadas em animais nascidos entre 1942 e 2006. A estrutura populacional foi estimada utilizando-se o programa Endog. Dos 140.628 animais avaliados, 67,7% dos pais, 14,52% dos avós e 3,18% dos bisavós eram conhecidos. O coeficiente de parentesco médio e a endogamia foram, em geral, baixos: 0,13 e 0,20%, respectivamente. Contudo, esses parâmetros podem ter sido subestimados, já que as informações de pedigree eram incompletas. O número efetivo de fundadores foi de 370 e a variabilidade genética na população explicada pelos 10, 50 e 448 mais influentes ancestrais foi de 13,2, 28 e 50%, respectivamente. A existência de variabilidade genética indica possibilidade de aumento na produtividade por meio da seleção. Adicionalmente, estratégias de manejo para diminuir a idade ao primeiro parto e o intervalo de gerações são importantes para o melhoramento da raça.

This paper provides an evaluation of the population structure, phenotype and genetic trends of registered Gyr herd cattle in northeast Brazil. The study provides important baseline information for the management, conservation and potential population expansion of this economically and culturally important cattle breed. Pedigree data were analyzed for individuals born between 1964 and 2006. Body weight values were adjusted to 205 and 365 days of age for animals born between 1978 and 2006. Phenotypic change of zebu Gyr in northeast Brazil is solely due to environmental improvement. However, there is potential for artificial selection for weight gain in young cattle. Effective population size decreased during the 1990s and the average inbreeding coefficient increased during the studied period. An increase of the effective population size of Gyr in northeast Brazil is strongly recommended, along with an increase in the management of the mating process to prevent inbreeding and to maintain the genetic variability of the breed.Com o intuito de fornecer subsídios para programas de conservação, seleção e expansão da raça Gir no Nordeste do Brasil, objetivou-se avaliar o histórico do rebanho Gir registrado no nordeste brasileiro, com base na sua estrutura populacional e no progresso genético e fenotípico de características de desenvolvimento ponderal. Foram utilizadas informações de pedigree de animais nascidos no período de 1964 a 2006 e dados dos pesos ajustados aos 205 e 365 dias de idade de bovinos nascidos de 1978 a 2006. O progresso genético para a raça no Nordeste foi ocasionado exclusivamente pelo melhoramento ambiental. O tamanho efetivo da população reduziu a partir da década de 90, e o coeficiente de endogamia médio aumentou durante o período estudado. É imprescindível que o tamanho efetivo da raça Gir do nordeste seja ampliado e que haja maior controle de acasalamentos entre indivíduos aparentados, para prevenção da endogamia e conservação da variabilidade genética e viabilidade da raça.

The aim of the present work was to estimate genetic variability in Chianina (CH), Marchigiana (MC) and Romagnola (RO) breeds using pedigree information. Different approaches based on probability of identity-by-descent (effective population size through an increase in inbreeding Ne) or probability of gene origin (total number of founders f, effective number of founders fe, ancestors fa and founder genomes fg) were used. Reference populations were defined using female animals born between 1996 and 2000 where both parents are known. Generation intervals were 5.35, 4.93 and 5.15 years for CH, MC and RO, respectively. The total number of founders were 7092, 11947, 3928, for CH, MC and RO, respectively. Complete generation equivalent showed the relative high quality of pedigree information: 5.66 for CH, 4.54 for MC and 4.95 for RO. For CH, MC and RO, respectively, a fe value of 152.1, 70.9 and 89.8, a fa value of 73.6, 48.0 and 59.5 and a fg value of 39.5, 25.0 and 38.5, were calculated. When inbreeding was used effective population sizes were 138, 122 and 124 for CH, MC and RO, respectively. Parameters derived from the probabilities of gene origin were variable among the investigated breeds and the results for MC demonstrate the need to pay specific attention to breeding strategies.

Longevity in beef cattle is an important economic trait. Including this trait in a breeding scheme increases profit and has a positive impact on the well-being and welfare of the animals. The aim of the present study was to evaluate the conse- quences of alternative selection strategies to include longevity in different breeding schemes using deterministic simula- tion. Different schemes were compared and economic (EcW) and empirical weights (EmW) were used to evaluate the responses. The empirical weights of average daily gain (ADG) and muscularity (MU) were identical because both traits have an identical importance for the breeders. Economic weights have been derived from profit equations. Traits used in the Basescenarios were: average daily gain pre-performance test (ADG1), average daily gain during the performance test (ADG2) and muscularity (MU); longevity (L) was included in the alternative schemes. When longevity was included both in the breeding index and in the breeding goal (scenario A-2), the total longevity response using EmW and EcW was +2.97 d/yr and +4.92 d/yr, respectively. The total economic response for scenario A-2 using EmW and EcW were 3.020 €/yr and 3.342 €/yr, respectively, and the total response in units of Bull Selection Index were +0.699 and +0.678, respectively. Longevity decreased when it was not included in either the breeding goal or in the breeding index (scenario Base), and economic response was the lowest found. The results of the current study indicate that the highest total response using either economic weights or empirical weights was found when information on longevity was included both in the breeding index and in the breeding goal (scenario A-2).

The aim of this paper was to study slaughter and carcass traits of Cinta Senese pigs, both pure and crossbred with LargeWhite, reared outdoors in woodland and indoors. Sixteen Cinta Senese (CS) and 16 Large White x Cinta Senese (LWxCS)pigs were reared outdoors (OUT) on woodland pastures with some food supplementation; 70 animals (29 CS, 29 LWxCSand 12 LW) were reared indoors (IN), allotted in pens for genetic type and sex. Pigs were slaughtered at about 140 kgof live weight and at an age greater than 8 months. After slaughter, carcass length, thorax depth, number of vertebraeand backfat thickness were measured, and carcasses were dissected into lean, fat and bone cuts. Average daily gain toslaughter differed markedly among the five GTxRS combinations (598; 512; 438; 338; 250 g/d, respectively for LW-IN;LWxCS-IN; CS-IN; LWxCS-OUT; CS-OUT). LWxCS-IN and LWxCS-OUT had respectively the highest and the lowest dressingpercentages (83.3% and 80.1%). A greater compactness of CS carcasses was evident from the length to depth ratio.In both farming systems CS pigs had the thickest backfat, and their differences with the other genetic types increasedproportionally according to a cranio-caudal gradient. Moreover, CS pigs showed lower percentage of lean cuts and a higherpercentage of fat cuts, than the other breeds. In the indoor system an additive effect was evident, with crossbred pigsshowing lean cuts yields (62.8%) of almost intermediate value with respect to the parental breeds (57.7% for CS and69.1% for LW). Some effects of the availability of woodland pastures on growth and carcass composition were alsoobserved, particularly showing CS-OUT pigs’ higher percentage of backfat and kidney fat, and lower percentage of loinand shoulder than the CS-IN ones.

This work aimed to study the digestive capacity and the nitrogen balance in Cinta Senese pigs in comparison with LargeWhite pigs, employing field bean and soybean as protein sources. Twelve 5-month old barrows, 6 Cinta Senese (CS) and6 Large White (LW), were submitted to trials in metabolism cage to determine apparent digestibility and nitrogen balanceof diets containing soybean meal (S diet) or field bean (F diet), 10% and 20% respectively, as the protein source.CS showed lower digestibility coefficients for all the nutritive fractions than LW pigs (DM: 85.33% vs. 82.87%; CP:86.38% vs. 84.17%; ADF 51.35% vs. 43.31%). Nitrogen retention, also, was less favorable in CS pigs, which showed a20% higher excretion (fecal + urinary) value of total N ingested (59.88% vs. 48.60%). Differences between the dietswere limited. Field beans, containing only 0.25% of tannin as used here, appear a valuable protein source in pig nutrition,even in local breeds such as CS.

The effects of rearing system on technological and physical-chemical traits of Cinta Senese hams were inves- tigated. Forty-three pigs were reared under two different farming conditions, outdoors and indoors, and slaughtered at 130 kg of live weight. Hams were processed according to the dry-curing method for Tuscan ham. Outdoor pigs showed higher salting losses (4.2 vs 2.0%) and lower seasoning losses (26.7 vs 29.0%). On sample-slice, pigs reared outdoors showed higher percentages of subcutaneous fat (40.5 vs 37.4%) and lower percentages of Semimembranosus(Sm) and Semitendinosus (St) muscles (23.8 vs 26.0% and 6.4 vs 7.0%, respectively).Outdoor pigs had higher values of chroma and lower values of hue in all analysed mus- cles (Biceps Femoris(BF), Sm and St) and their subcutaneous fat showed lower chroma (5.0 vs 7.0) and higher hue values (0.939 vs 0.627). BF of outdoor pigs had higher percentages of intramuscular fat (6.4 vs 4.9%) and lower percentages of crude protein (27.4 vs 30.9%). Subcutaneous fat of outdoor pigs showed lower SFA contents (32.1 vs 35.9%) and higher percentages of PUFA n-3 (1.23 vs 0.30%) and PUFA n-6 (11.8 vs 7.66%). Outdoor pigs had a higher PUFA/SFA ratio (0.41 vs 0.22).

Twenty-nine Cinta Senese (CS), 12 Large White (LW) and 29 LWxCS pigs were reared indoor and group fed on com- mercial mixtures in pens averaging 6 animals according to genetic type and sex. Seventeen CS and 16 LWxCS pigs were reared outdoor on woodland pastures (Quercus ilex, Castanea sativa) with minimum commercial mixtures supplementa- tion. Both males and females were castrated. Since the age of 100 days morphological measures were recorded bimonth- ly (height at rump, body length, chest girth, width at shoulder, width at rump). To perform a statistical analysis, factors such as regression on age and allometric relationship on weight were taken into consideration, together with the fixed effect of genetic type x rearing system. In the indoor system, CS pigs reached 140 kg of live weight 30 and 100 days later than LWxCS and LW pigs, respectively. Moreover, CS conversion index was worse than that of LW pigs (i.e. 4.54 vs. 3.77 feed/gain) and CS backfat thickness was higher. During spring and summer, the outdoor system worsened the growth of backfat in both genetic types, as a consequence of scarce feed availability. However, cross pigs showed high- er growth rate than CS breed. Allometric relationships analysis pointed out that CS pigs were taller, narrower at shoul- der and at rump and shorter than LW pigs. Moreover, CS breed had higher chest girth than LW and the difference became more evident at higher weights. Crossbred pigs showed intermediate behaviour compared to parental breeds. Outdoor reared Cinta Senese pigs differed from those indoor in the evolution of body proportion, due to older age at a given weight and to the grazing activity. No differences were found with respect to for width values at rump, but outdoor CS pigs pre- sented higher growth for width at shoulder and for chest girth. Thus, the outdoor system seems to intensify the devel- opment of the body forepart in Cinta Senese breed, already emphasised in this breed.

The Maremmana breed is characterised by rusticity, resistance to harsh environments and good growth ability and it could be considered as one of the most suited breeds for extensive rearing in Italy. Moreover, Maremmana presents high fertility and good fostering ability but, on the other hand, the age at first calving appears quite high. This could probably be due to reduced feed availability to which animals are frequently subjected. The aim of this paper was to determine the age at puberty in Maremmana heifers, the repeatability of the reproductive cycles along the seasons and to verify the possibility to anticipate the age at first service. Haematic levels of progesterone and 17-β-estradiol were determined weekly in 6 heifers raised in pens and fed with 0.70 Milk FU/kg DM and 121 g of gross protein/kg d.m, starting from 9 up to 25 months of age. Metabolic profile was determined monthly to highlight possible metabolic unbalances that could affect reproductive activity. Plasma was submitted to RIA analysis in order to measure steroidal hormones. Puberty was considered reached when two subsequent measures of progesterone resulted higher than 1 ng/ml of plasma. This happened in 5 out of 6 heifers at an average age of 17 months. The fluctuation of the hormonal levels throughout the year seems to exclude the seasonality of the oestrous cycle. The results showed that the level of the most important metabolites is within the normal range and it does not seem to interfere with the choice to anticipate the first service by one year. Possible periods of anoestrus noticed in some herds could be linked to the reduced availability of pastures in a few months of the year.

The assessment of blood reference ranges of farmed fish can be extremely useful in improving production and productquality. A first attempt to establish the normality ranges for the most important haematochemical parameters of farmedsea bass was carried out by analysing the trend of Haematocrit, Glucose, Total Protein, Albumin, Globulin, TotalCholesterol and some electrolytes in 353 sea bass farmed with two different farming systems within 1 year. A strong seasonaleffect was found with regard to each parameter; the role of some environmental conditions was evaluated; andsome reference ranges were proposed for the culturing methods considered.

The aim of this study was to investigate the effect of diets containing genetically modified organism-free legumes as a replacement of soybean on the basis of performance, carcass composition and quality of local pig meat (Cinta Senese). Twenty-four Cinta Senese barrows were divided into 3 dietary groups and were each fed with a diet containing different protein sources: soybean meal (SOY), Vicia faba (FABA) and Pisum sativum (PEA) (8 pigs for each group). The diets were isonitrogenous and isocaloric and contained approximately 14.5% crude protein and 14.8 MJ/kg of digestible energy (on dry matter). Each group was reared outdoors in a paddock of 3500 m2. In vivo performances were not different among groups. At slaughter, differences in subcutaneous fat thickness appeared only in the outer layer, at the last thoracic vertebra level, which was lowest in the PEA group. No differences were found in the sample joint composition. With regard to the chemico-physical traits of meat and fat, the FABA group had the highest values of redness in lean and backfat, while the PEA group showed higher moisture and lower fat content in meat compared to the SOY group. Differences in the fatty acid profile of backfat were found only for the C16:1 percentage that was higher in FABA than SOY pigs. In conclusion, Vicia faba and Pisum sativum could be a good alternative to soybean in the growing-fattening of Cinta Senese pigs.

Objetivou-se estimar os parâmetros genéticos e fenotípicos de características reprodutivas de fêmeas bovinas da raça Chianina criadas em diferentes rebanhos participantes da Associazione Nazionale Allevatori Bovini Italiani da Carne (ANABIC). As características estudadas foram idade ao primeiro parto (IPP), primeiro intervalo de partos (IDP1) e intervalo médio de partos (IMDP). As análises estatísticas foram realizadas pelo procedimento General Linear Model (GLM) do programa estatístico SAS (Statistical Analysis System) e os componentes de variância foram estimados pelo método de máxima verossimilhança restrita utilizando-se o software MTDFREML sob modelo animal. Os números de observações utilizados para IPP, IDP1 e IMDP foram, respectivamente, 31.023; 23.998 e 94.497 e as médias encontradas, em dias, 1.037,69 ± 186,37; 457,93 ± 96,80 e 436,26 ± 90,83 para IPP, IDP1, IDPM. Todas as características avaliadas foram influenciadas pelo rebanho. Verificou-se efeito de estação e ano de nascimento da vaca sobre a IPP. O IDP1 e o IDPM foram influenciados por rebanho, estação e ano do parto precedente, observando-se efeito também da ordem de parição sobre o IDPM. As estimativas de herdabilidade para IPP, IDP1 e IDPM foram, respectivamente de 0,36 ± 0,014; 0,13 ± 0,014 e 0,05 ± 0,004. A repetibilidade para IDPM foi de 0,075 ± 0,004. A utilização de IPP e IDP1 em programas de melhoramento genético pode resultar em maior precocidade e mais alto potencial para longevidade nestes rebanhos.ABSTRACT This study aimed to evaluate the reproductive performance of Chianina cows born from 1977 to 2002. Data was used to calculate age at first calving (AFC), first calving interval (CI1) and average calving intervals (avgCIs) for the whole lifetime of cows. After editing data, the number of records used for AFC, CI1 and avgCIs analyses were respectively 31,023; 23,998 and 94,497 respectively. Statistical analyses were done using the SAS program (Statistical Analysis System) and variance components were estimated by REML using the software MTDFREML fitting animal models. Means for AFC, CI1 and avgCIs were 1,037.69 ± 186.37, 457.93 ± 12.22 and 436,26 ± 12,17 days, respectively. Heritability estimates for AFC, CI1 and avgCIs were respectively 0.36 ± 0.014; 0.13 ± 0.014 e 0.05±0.004 and the repeatability for avgCIs was 0.075 ± 0.004. The use of AFC and CI1 in genetic improvement programs may lead to an increase in precocity and potential longevity. Changes in management of females may decrease avgCIs, leading to higher and faster improvement in reproductive efficiency.