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2. Storing biological sequence databases in relational form

Author

Yuhong Wang, Reynold DeMarco, Guochun Xie, and Richard A. Blevins

Subjects
Statistics and Probability, Java, Databases, Factual, Computer science, computer.internet_protocol, Interface (Java), Relational database, computer.software_genre, Biochemistry, Oracle, Set (abstract data type), Relational database management system, Amino Acid Sequence, Molecular Biology, computer.programming_language, Database, Base Sequence, Database schema, InformationSystems_DATABASEMANAGEMENT, Computational Biology, Computer Science Applications, Computational Mathematics, Computational Theory and Mathematics, ComputingMethodologies_DOCUMENTANDTEXTPROCESSING, Perl, computer, XML, Software
Abstract

Summary: We have created a set of applications using Perl and Java in combination with XML technology to install biological sequence databases into an Oracle RDBMS. An easy-to-use interface using Java has been created for database query and other tools developed to integrate with our in-house bioinformatics applications. Availability: The database schema, DTD file, and source codes are available from the authors via email. Contact: guochun_xie@merck.com

Published
2000

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