432 results on '"Retinoid receptor"'
Search Results
2. A multidisciplinary approach disclosing unexplored Aflatoxin B1 roles in severe impairment of vitamin D mechanisms of action
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Marco Persico, Raffaele Sessa, Elena Cesaro, Irene Dini, Paola Costanzo, Alberto Ritieni, Caterina Fattorusso, Michela Grosso, Persico, Marco, Sessa, Raffaele, Cesaro, Elena, Dini, Irene, Costanzo, Paola, Ritieni, Alberto, Fattorusso, Caterina, and Grosso, Michela
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Aflatoxin B1 ,Transcriptional regulation ,Vitamin D receptor ,Docking studie ,Health, Toxicology and Mutagenesis ,Retinoid receptor ,Gene expression ,Cell Biology ,Toxicology - Abstract
Aflatoxin B1 (AFB1), produced by fungi of the genus Aspergillus, is the most toxic and carcinogenic mycotoxin among the classes of aflatoxins. Previous research showed that AFB1 affects vitamin D receptor (VDR) expression. In the present study, integrated computational and experimental studies were carried out to investigate how AFB1 can interfere with Vitamin D signalling. A competitive antagonism of AFB1 toward RXRα and VDR was hypothesized by comparing the docked complex of AFB1/RXRα and AFB1/VDR ligand-binding domain (LBD) with the X-ray structures of RXRα and VDR bound to known ligands. Accordingly, we demonstrated that AFB1 can affect vitamin D-mediated transcriptional activation of VDR by impairing the formation of protein complexes containing both VDR-RXRα and RXRα/RAR and affecting the subcellular localization of VDR and RXRα. As a whole, our data indicate that AFB1 can interfere with different molecular pathways triggered by vitamin D with an antagonistic mechanism of action.
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- 2022
3. Chemoprevention
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Lombari, Pietro, Aurilio, Gaetano, De Vita, Fernando, Catalano, Giuseppe, and Renda, Andrea
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- 2009
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4. Retinoids and Breast Cancer Prevention
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Bonanni, Bernardo, Lazzeroni, Matteo, Senn, Hans-Jörg, editor, Kapp, Ursula, editor, and Otto, Florian, editor
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- 2009
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5. Skin Cancer: Antioxidants and Diet
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Göppner, Daniela, Gollnick, Harald, Jemec, Gregor B. E., editor, Kemeny, Lajos, editor, and Miech, Donald, editor
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- 2009
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6. Transcriptional-regulatory convergence across functional MDD risk variants identified by massively parallel reporter assays
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Joseph D. Dougherty and Bernard Mulvey
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Quantitative Trait Loci ,Population ,Retinoid receptor ,Single-nucleotide polymorphism ,Genome-wide association study ,Neurosciences. Biological psychiatry. Neuropsychiatry ,Computational biology ,Biology ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Humans ,Genetic Predisposition to Disease ,Epigenetics in the nervous system ,Enhancer ,education ,Biological Psychiatry ,030304 developmental biology ,Genetic association ,Genetics ,Depressive Disorder, Major ,0303 health sciences ,education.field_of_study ,Depression ,Promoter ,Genomics ,Psychiatry and Mental health ,Expression quantitative trait loci ,030217 neurology & neurosurgery ,Genome-Wide Association Study ,RC321-571 - Abstract
Family and population studies indicate clear heritability of major depressive disorder (MDD), though its underlying biology remains unclear. The majority of single-nucleotide polymorphism (SNP) linkage blocks associated with MDD by genome-wide association studies (GWASes) are believed to alter transcriptional regulators (e.g., enhancers, promoters), based on enrichment of marks correlated with these functions. A key to understanding MDD pathophysiology will be elucidation of which SNPs are functional and how such functional variants biologically converge to elicit the disease. Furthermore, retinoids can elicit MDD in patients, and promote depressive behaviors in rodent models, acting via a regulatory system of retinoid receptor transcription factors (TFs). We therefore sought to simultaneously identify functional genetic variants and assess retinoid pathway regulation of MDD risk loci. Using Massively Parallel Reporter Assays (MPRAs), we functionally screened over 1 000 SNPs prioritized from 39 neuropsychiatric trait/disease GWAS loci, with SNPs selected based on overlap with predicted regulatory features—including expression quantitative trait loci (eQTL) and histone marks—from human brains and cell cultures. We identified >100 SNPs with allelic effects on expression in a retinoid-responsive model system. Further, functional SNPs were enriched for binding sequences of retinoic acid-receptive transcription factors (TFs); with additional allelic differences unmasked by treatment with all-trans retinoic acid (ATRA). Finally, motifs overrepresented across functional SNPs corresponded to TFs highly specific to serotonergic neurons, suggesting an in vivo site of action. Our application of MPRAs to screen MDD-associated SNPs suggests a shared transcriptional regulatory program across loci, a subset of which are unmasked by retinoids.
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- 2021
7. Concomitant inhibition of hedgehog signalling and activation of retinoid receptors abolishes bleomycin‐induced lung fibrosis
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Gouda K. Helal, Ahmed Fawzy Eleraky, Raed S. Ismail, and Mohamed F. ElShafie
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0301 basic medicine ,Receptors, Retinoic Acid ,Physiology ,medicine.drug_class ,Pulmonary Fibrosis ,Retinoic acid ,Retinoid receptor ,Retinoid X receptor ,Bleomycin ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Physiology (medical) ,Pulmonary fibrosis ,medicine ,Animals ,Retinoid ,Receptor ,Pharmacology ,Chemistry ,medicine.disease ,Hedgehog signaling pathway ,Rats ,Oxidative Stress ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cancer research ,Signal Transduction - Abstract
Pulmonary fibrosis is a devastating disease with unknown treatment. All-trans retinoic acid (ATRA) attenuates bleomycin-induced lung fibrosis by different mechanistic pathways. However, the role of retinoid receptors in lung fibrosis is still unclear. Forskolin (FSK), a potent inhibitor for the revolutionary hedgehog (Hh) signalling pathway, has a promising antifibrotic effect on other organs such as the liver. This study investigates the interplay between the retinoid receptors modulation and the Hh signalling pathway in bleomycin (BLM)-induced pulmonary fibrosis. Rats were randomised and administrated a single dose of 7.5 mg/kg of BLM alone and with ATRA, FSK and both of them. The effects of FSK and ATRA on lung functions, oxidative stress markers (malondialdehyde [MDA], glutathione [GSH], superoxide dismutase [SOD] and catalase [CAT]), retinoid markers (retinoic acid receptors [RAR] and rexinoid X receptors [RXR]) and Hh signalling markers (patched homolog 1 [Ptch-1], Smoothened [Smo] and glioblastoma-2 [Gli-2]) were assessed. In single therapies, ATRA and FSK ameliorated BLM-induced lung fibrosis. On the contrary, a combination of both drugs synergistically reversed the effect of BLM-induced lung fibrosis, as indicated by the enhancement of lung functions and the decrease of the α-smooth muscle actin (α-SMA) expression and collagen deposition. Additionally, FSK and ATRA ameliorated oxidative stress and inflammation, reduced transforming growth factor β1 (TGF-β1) levels and reversed the effect of BLM on the mRNA expression of Ptch-1, Smo and Gli-2. FSK inhibited the Hh pathway and also activated protein kinase A (PKA) that is, in part, involved in phosphorylation of RAR/RXR heterodimer (a key step in retinoid receptor activation). The present results suggest that a combination of FSK and ATRA has a promising therapeutic value for lung fibrosis management.
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- 2021
8. Retinoid-Induced Apoptosis in Hepatocellular Carcinoma: A Molecular Basis for 'Clonal Deletion' Therapy
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Okuno, Masataka, Moriwaki, Hisataka, Matsushima-Nishiwaki, Rie, Sano, Tetsuro, Adachi, Seiji, Akita, Kuniharu, Kojima, Soichi, and Okita, Kiwamu, editor
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- 2002
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9. Molecular Bases of Bud Development in Ascidians
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Fujiwara, Shigeki, Kamimura, Mika, Ohashi, Mitsuko, Kawamura, Kazuo, Sawada, Hitoshi, editor, Yokosawa, Hideyoshi, editor, and Lambert, Charles C., editor
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- 2001
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10. Synthetic retinoids and their usefulness in biology and medicine
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Dawson, M. I., Zhang, X., Hobbs, P. D., Jong, L., Azzi, Angelo, editor, Packer, Lester, editor, and Livrea, Maria A., editor
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- 2000
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11. Pharmacology and molecular mechanisms of retinoid action in skin
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Kang, S., Fisher, G. J., Voorhees, J. J., Azzi, Angelo, editor, Packer, Lester, editor, and Livrea, Maria A., editor
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- 2000
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12. Modulation of nuclear vitamin D signalling by retinoids
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Carlberg, C., Polly, P., Azzi, Angelo, editor, Packer, Lester, editor, and Livrea, Maria A., editor
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- 2000
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13. The Role of Retinoids in Vertebrate Limb Morphogenesis: Integration of Retinoid- and Cytokine-Mediated Signal Transduction
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Lu, H.-C., Thaller, C., Eichele, G., Nau, Heinz, editor, and Blaner, William S., editor
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- 1999
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14. Avian Embryo as Model for Retinoid Function in Early Development
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Zile, M. H., Nau, Heinz, editor, and Blaner, William S., editor
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- 1999
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15. Retinoid Receptors, Their Ligands, and Teratogenesis: Synergy and Specificity of Effects
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Nau, H., Elmazar, M. M. A., Nau, Heinz, editor, and Blaner, William S., editor
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- 1999
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16. Growth Control by Retinoids: Regulation of Cell Cycle Progression and Apoptosis
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Harvat, B., Jetten, A. M., Nau, Heinz, editor, and Blaner, William S., editor
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- 1999
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17. Aberrant Expression and Function of Retinoid Receptors in Cancer
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Xu, X.-C., Lotan, R., Nau, Heinz, editor, and Blaner, William S., editor
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- 1999
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18. The Retinoids: Cancer Therapy and Prevention Mechanisms
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Nason-Burchenal, K., Dmitrovsky, E., Nau, Heinz, editor, and Blaner, William S., editor
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- 1999
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19. RAR-Selective Ligands: Receptor Subtype and Function Selectivity
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Beard, R. L., Chandraratna, R. A. S., Nau, Heinz, editor, and Blaner, William S., editor
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- 1999
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20. Nuclear Retinoid Receptors and Mechanisms of Action
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Piedrafita, F. Javier, Pfahl, M., Nau, Heinz, editor, and Blaner, William S., editor
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- 1999
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21. Activator of thyroid and retinoid receptor increases sorafenib resistance in hepatocellular carcinoma by facilitating the Warburg effect
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Caiyan Zhao, Ying Liu, Tao Wang, Yadong Wang, An Xu, Wenpeng Liu, Yanhong Tai, Yongfu Ma, Luyuan Ma, Juqiang Han, Quanbo Ji, and Chuan Shen
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0301 basic medicine ,Sorafenib ,Male ,Cancer Research ,Carcinoma, Hepatocellular ,Carcinogenesis ,Retinoid receptor ,Mice, Nude ,Antineoplastic Agents ,Biology ,Nuclear Receptor Coactivator 3 ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Downregulation and upregulation ,medicine ,Animals ,Humans ,Glycolysis ,neoplasms ,aerobic glycolysis ,Gene knockdown ,treatment ,Liver Neoplasms ,sorafenib resistance ,General Medicine ,Original Articles ,Hep G2 Cells ,medicine.disease ,Warburg effect ,Xenograft Model Antitumor Assays ,digestive system diseases ,030104 developmental biology ,Oncology ,Anaerobic glycolysis ,hepatocarcinoma ,Drug Resistance, Neoplasm ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Cancer research ,Original Article ,medicine.drug ,activator of thyroid and retinoid receptor - Abstract
Sorafenib resistance is a major challenge in the therapy for advanced hepatocellular carcinoma (HCC). However, the underlying molecular mechanisms of HCC resistance to sorafenib remain unclear. Activator of thyroid and retinoid receptor (ACTR, also known as SRC‐3), overexpressed in HCC patients, plays an important oncogenic role in HCC; however, the link between ACTR and sorafenib resistance in HCC is unknown. Our study demonstrated that ACTR was one of the most upregulated genes in sorafenib‐resistant HCC xenografts. ACTR increases sorafenib resistance through regulation of the Warburg effect. ACTR promotes glycolysis through upregulation of glucose uptake, ATP and lactate production, and reduction of the extracellular acidification and the oxygen consumption rates. Glycolysis regulated by ACTR is vital for the susceptibility of HCC to sorafenib in vitro and in vivo. Mechanistically, ACTR knockout or knockdown decreases the expression of glycolytic enzymes. In HCC patients, ACTR expression is positively correlated with glycolytic gene expression and is associated with poorer outcome. Furthermore, ACTR interacts with the central regulator of the Warburg effect, c‐Myc, and promotes its recruitment to glycolytic gene promoters. Our findings provide new clues regarding the role of ACTR as a prospective sensitizing target for sorafenib therapy in HCC., Sorafenib resistance is a major challenge in the therapy for advanced hepatocellular carcinoma (HCC). However, the underlying molecular mechanisms of HCC resistance to sorafenib remain unclear. Here, the authors find that ACTR increases the sorafenib resistance phenotype and suppresses sorafenib‐induced apoptosis through upregulation of the Warburg effect, providing new clues regarding ACTR as a prospective sensitizing target in sorafenib therapy.
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- 2020
22. Expression of retinoid receptors in hand eczema
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Dina Elantably, Hanan Nada, Laila A. Rashed, and Dina Ahmed El Sharkawy
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Receptors, Retinoic Acid ,medicine.drug_class ,Eczema ,Down-Regulation ,Retinoid receptor ,Dermatology ,Retinoid X receptor ,Severity of Illness Index ,Pathogenesis ,Retinoids ,Young Adult ,030207 dermatology & venereal diseases ,03 medical and health sciences ,Alitretinoin ,0302 clinical medicine ,Internal medicine ,Humans ,Medicine ,Retinoid ,Receptor ,Aged ,Skin ,business.industry ,Middle Aged ,Hand ,medicine.disease ,Healthy Volunteers ,Retinoic acid receptor ,Retinoid X Receptors ,Endocrinology ,Dermatitis, Occupational ,Hand eczema ,Case-Control Studies ,030220 oncology & carcinogenesis ,embryonic structures ,Female ,business ,medicine.drug - Abstract
BACKGROUND Hand eczema is the most common occupational skin disease. The etiology is multifactorial. Systemic alitretinoin, a pan-retinoic receptor agonist, has proven efficacy in the treatment of recalcitrant chronic hand eczema; however, its precise mechanism of action in hand eczema is not fully understood. AIMS Assessment of the level of expression of retinoid receptors (RAR and RXR) in the skin of patients with hand eczema in an attempt to explain their possible role in the pathogenesis of the disease. METHODS Thirty patients with hand eczema and 30 age- and sex-matched healthy controls were included. Full clinical examination was done, and tissue levels of retinoic acid receptor (RAR) and retinoid x receptor (RXR) were measured by quantitative real-time PCR (qRT-PCR). RESULTS The levels of RAR and RXR expression were significantly downregulated in the patient group compared to the control group; (P
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- 2020
23. The Roles of GSK-3β in Regulation of Retinoid Signaling and Sorafenib Treatment Response in Hepatocellular Carcinoma
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Jie Liu, Kun Chen, Sally K. Y. To, Jin-Zhang Zeng, Wengang Li, Juan Tang, Xiao-kun Zhang, Alice S.T. Wong, Shuaishuai Zhang, Yuqi Zhou, Weiwei Gao, Fangzhou Liu, Huaifang Zhang, and Hu Zhou
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0301 basic medicine ,Male ,Receptors, Retinoic Acid ,medicine.medical_treatment ,Cell ,Medicine (miscellaneous) ,Retinoid receptor ,Targeted therapy ,Mice ,0302 clinical medicine ,Liver Neoplasms, Experimental ,Retinoid ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Retinoid X Receptor beta ,Mice, Inbred BALB C ,Kinase ,Retinoic Acid Receptor alpha ,Hep G2 Cells ,Sorafenib ,medicine.anatomical_structure ,Hepatocellular carcinoma ,030220 oncology & carcinogenesis ,Sample collection ,medicine.drug ,Research Paper ,Carcinoma, Hepatocellular ,medicine.drug_class ,Cell Survival ,Antineoplastic Agents ,Tretinoin ,macromolecular substances ,Retinoid X receptor ,Biology ,03 medical and health sciences ,medicine ,Animals ,Humans ,neoplasms ,Glycogen Synthase Kinase 3 beta ,business.industry ,GSK-3β ,Target Therapy ,Hepatocellular Carcinoma ,medicine.disease ,digestive system diseases ,Retinoic acid receptor ,030104 developmental biology ,HEK293 Cells ,Cancer research ,business ,Chromatin immunoprecipitation ,Retinoid Receptor ,Neoplasm Transplantation - Abstract
Background: Glycogen synthase kinase-3β (GSK-3β) is recently demonstrated to be a tumor promoter and a potential drug target in several tumors. However, the implication and mechanism of GSK-3β in hepatocellular carcinoma (HCC) remain unexplored. Methods: We firstly clarified the expression of GSK-3β in human HCC samples. Given that deviated retinoid signalling is critical for HCC development, we investigated where GSK-3β could be involved in the regulation. Since sorafenib is currently used to treat HCC, the involvement of GSK-3β in sorafenib treatment response was determined. Coimmunoprecipitation, GST pull down, in vitro kinase assay, luciferase reporter and chromatin immunoprecipitation were used to study the molecular mechanism. The biological readouts were examined with MTT, flow cytometry and animal experiments. Findings: We demonstrated that GSK-3β is highly expressed in HCC and associated with shorter overall survival (OS). Tumor-associated GSK-3β is correlated with reduced expression of retinoic acid receptor-β (RARβ), which is caused by GSK-3β-mediated phosphorylation and heterodimerization abrogation of retinoid X receptor (RXRα) with RARα on RARβ promoter. Overexpression of functional GSK-3β impairs retinoid response and represses sorafenib anti-HCC effect. Inactivation of GSK-3β by tideglusib can potentiate 9-cis-RA enhancement of sorafenib sensitivity (tumor inhibition: from 48.3% to 93.4%). Efficient induction of RARβ by tideglusib/9-cis-RA is required for enhanced therapeutic outcome of sorafenib, which effect is greatly inhibited by knocking down RARβ. Interpretation: Our findings suggest that overexpression of GSK-3β may confer HCC growth through interfering retinoid signalling. Targeting GSK3β can be a promising strategy for designing improved treatment of sorafenib in HCC. Funding Statement: This work is supported by grants from Natural Science Foundation of China (No. 81673467, 31471273, 31461163002/RGC N_HKU 740/14), the 10th Singapore-China Joint Research Program (S2014GR0448), Natural Science Foundation of Fujian Province (2019I0002) and Leading Talents in Scientific and Technological Innovation, Double Hundred Talents Program of Fujian Province. Declaration of Interests: The authors declare no competing interests. Ethics Approval Statement: All the use of human samples and study protocols were approved by the Hospital Ethics Committee. All patients signed an informed consent form in prior to sample collection.
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- 2020
24. Control of Retinoid Nuclear Receptor Function and Expression
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Niles, Richard M., Harris, J. Robin, editor, Quinn, Peter J., editor, and Kagan, Valerian E., editor
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- 1998
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25. A Structural View of the Retinoid Nuclear Receptors
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Klaholz, B. P., Moras, D., Stock, G., editor, Habenicht, U.-F., editor, Gronemeyer, H., editor, Fuhrmann, U., editor, and Parczyk, K., editor
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- 1998
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26. Retinoids
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Kochhar, D. M., Kavlock, Robert J., editor, and Daston, George P., editor
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- 1997
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27. Regulation of E6 and E7 Oncogene Transcription
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Rösl, Frank, Schwarz, Elisabeth, and Tommasino, Massimo
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- 1997
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28. Retinoids: Concepts for Separation of Desirable and Undesirable Effects in the Treatment or Prevention of Cancer
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Pfahl, Magnus, Moudgil, V. K., editor, and Vedeckis, Wayne V., editor
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- 1996
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29. Retinoids and Axial Patterning in the Early Vertebrate Embryo
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Durston, A. J., van der Wees, J., Pijnappel, W. W. M., Schilthuis, J. G., Godsave, S. F., Zagris, Nikolas, editor, Duprat, Anne Marie, editor, and Durston, Antony, editor
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- 1995
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30. Induction and the Generation of Regional and Cellular Diversity in the Developing Mammalian Brain
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LaMantia, Anthony-Samuel, Colbert, Melissa C., Linney, Elwood, Fedoroff, Sergey, editor, Burkholder, Gary D., editor, Juurlink, Bernhard H. J., editor, Krone, Patrick H., editor, Kulyk, William M., editor, Verge, Valerie M. K., editor, and Doucette, J. Ronald, editor
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- 1995
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31. Retinoic Acid Receptors
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Keaveney, Marie, Stunnenberg, Hendrik G., Karin, Michael, editor, and Baeuerle, P. A., editor
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- 1995
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32. Molecular Mechanisms of Retinoid Action
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Zelent, Arthur, Degos, Laurent, editor, and Parkinson, David R., editor
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- 1995
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33. Differential Enhancement of Monoclonal Antibody Production by Retinoids in Human Hybridomas
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Inoue, Yuichi, Shirahata, Sanetaka, Lindner-Olsson, Elisabeth, editor, Chatzissavidou, Nathalie, editor, and Lüllau, Elke, editor
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- 2001
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34. The Induction of Apoptosis in Human Malignant Keratinocytes by Antisense DNA to Retinoid Receptors: Keys to the Function of Apoptosis and Vitamin A
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Cope, F. O., Wille, J. J., Tomei, L. D., Columbano, Amedeo, editor, Feo, Francesco, editor, Pascale, Rosa, editor, and Pani, Paolo, editor
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- 1991
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35. Retinoid receptor turnover mediated by sumoylation, ubiquitination and the valosin-containing protein is disrupted in glioblastoma
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Mark R. Gilbert, Mioara Larion, Rolanda Bailey, and Virginia Rodriguez
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Proteasome Endopeptidase Complex ,Receptors, Retinoic Acid ,medicine.drug_class ,Valosin-containing protein ,Retinoic acid ,SUMO protein ,Retinoid receptor ,lcsh:Medicine ,Article ,Mice ,chemistry.chemical_compound ,Neural Stem Cells ,Ubiquitin ,Valosin Containing Protein ,medicine ,Animals ,Humans ,Retinoid ,Receptor ,lcsh:Science ,Feedback, Physiological ,Multidisciplinary ,biology ,lcsh:R ,Ubiquitination ,Sumoylation ,Cell biology ,CNS cancer ,HEK293 Cells ,chemistry ,Proteasome ,Proteolysis ,biology.protein ,lcsh:Q ,Glioblastoma ,Post-translational modifications - Abstract
Resistance to therapeutic use of retinoids in glioma has been observed for over 20 years; however, the exact mechanism of resistance remains unknown. To understand retinoic acid resistance in glioma, we studied the turnover mechanism of retinoid receptor proteins in neural stem cells and glioma stem-like cells. Here, we show that in normal neural stem cells, proteasomal degradation of retinoid receptors involves sumoylation, ubiquitination and recognition by the valosin-containing protein (VCP/p97/Cdc48). We find that Sumo1 modification has a dual role to stabilize the retinoid receptor from unwanted degradation and signal additional modification via ubiquitination. Subsequently, the modified receptor binds to the VCP chaperone and both proteins are degraded by the proteasome. Additionally, we reveal that all trans retinoic acid (ATRA) induces VCP expression, creating a positive feedback loop that enhances degradation. In contrast, the pathway is impaired in the glioma stem-like cells resulting in the accumulation of sumoylated and high molecular weight forms of retinoid receptors that lack transcriptional activity and fail to be recognized by the proteasome. Moreover, modified receptor accumulation occurs before ATRA treatment; therefore, the transcritptional defect in glioma is due to a block in the proteasomal degradation pathway that occurs after the sumo modification step.
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- 2019
36. Organotin compound DBDCT induces CYP3A suppression through NF-κB-mediated repression of PXR activity
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Jiaqi Mai, Yunlan Li, Xiaoqing Ji, Qingshan Li, and Niu Lin
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0301 basic medicine ,Biophysics ,Receptors, Cytoplasmic and Nuclear ,Retinoid receptor ,Retinoid X receptor ,Models, Biological ,digestive system ,Biochemistry ,Gene Expression Regulation, Enzymologic ,Biomaterials ,03 medical and health sciences ,chemistry.chemical_compound ,RNA interference ,Organotin Compounds ,Animals ,Cytochrome P-450 CYP3A ,Humans ,RNA, Messenger ,RNA, Small Interfering ,Constitutive Androstane Receptor ,Cell Nucleus ,Regulation of gene expression ,Pregnane X receptor ,Base Sequence ,030102 biochemistry & molecular biology ,Tumor Necrosis Factor-alpha ,NF-kappa B ,Pregnane X Receptor ,Metals and Alloys ,NF-κB ,Hep G2 Cells ,digestive system diseases ,Rats ,Cell biology ,Protein Transport ,030104 developmental biology ,chemistry ,Nuclear receptor ,Chemistry (miscellaneous) ,Androstane ,Signal Transduction - Abstract
Organotin anticancer agent di-n-butyl-di-(4-chlorobenzohydroxamato)tin(iv) (DBDCT) exerted an inhibitory effect on its major metabolic enzyme cytochrome CYP3A. But whether hepatic drug-metabolizing enzymes and their regulatory nuclear receptors including pregnane PXR and constitutive androstane CAR binding with retinoid receptor RXR as a heterodimer are involved in the DBDCT-mediated regulation of CYP3A remains unclear. This study was undertaken to determine the mechanisms responsible for the effects of DBDCT on CYP3A suppression, focusing on the PXR-mediated and NF-κB pathways. The results indicated DBDCT suppressed CYP3A expression by inhibiting CAR expression. But what's interesting is, both protein and mRNA of PXR increased with increasing DBDCT. A further exploration, dual luciferase reporter gene analysis, clarified that DBDCT induced CYP3A expression elevation via the PXR-mediated pathway and this induction was countered by activation of NF-κB, which played a pivotal role in suppression of CYP3A through disrupting the association of the PXR–RXRα complex with DNA sequences by EMSA. PXR-mediated CYP3A expression was similarly demonstrated by RNAi. As expected, expression of CYP3A and its mRNA levels were reduced by DBDCT only in NF-κB(+/+) but not in NF-κB(−/−) cells. The inductive effect of DBDCT on CYP3A4 mRNA was enhanced in PXR shRNA-transfected cells but weakened in the ip65 group, which showed both PXR up-regulated CYP3A expression and NF-κB p65 activation directly contributed to CYP3A inhibition. In conclusion, activated NF-κB by DBDCT interacts directly with the DNA-binding domain of PXR, and disrupts the binding between the PXR–RXR dimer, thereby affecting the regulatory process for CYP3A transcription and, therefore, leading to a decrease of the expression of the PXR-regulated CYP3A.
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- 2019
37. Vitamin A Update: Forms, Sources, Kinetics, Detection, Function, Deficiency, Therapeutic Use and Toxicity
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Kateřina Matoušová, Lenka Kujovská Krčmová, Alejandro Carazo, Kateřina Macáková, Michele Protti, Přemysl Mladěnka, Carazo A., Macakova K., Matousova K., Krcmova L.K., Protti M., and Mladenka P.
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0301 basic medicine ,Vitamin ,vision ,Retinoic acid ,Review ,Biology ,03 medical and health sciences ,chemistry.chemical_compound ,hypovitaminosis ,medicine ,retinoic acid ,Humans ,cancer ,TX341-641 ,Nutritional Physiological Phenomena ,Vitamin A ,Carotenoid ,retinoid receptor ,chemistry.chemical_classification ,030109 nutrition & dietetics ,Nutrition and Dietetics ,Hypovitaminosi ,Nutrition. Foods and food supply ,Vitamin A Deficiency ,Provitamin ,Retinol ,toxicity ,Retinal ,medicine.disease ,Micronutrient ,Vitamin A deficiency ,030104 developmental biology ,Biochemistry ,chemistry ,gene regulation ,Food Science ,Human ,retinol - Abstract
Vitamin A is a group of vital micronutrients widely present in the human diet. Animal-based products are a rich source of the retinyl ester form of the vitamin, while vegetables and fruits contain carotenoids, most of which are provitamin A. Vitamin A plays a key role in the correct functioning of multiple physiological functions. The human organism can metabolize natural forms of vitamin A and provitamin A into biologically active forms (retinol, retinal, retinoic acid), which interact with multiple molecular targets, including nuclear receptors, opsin in the retina and, according to the latest research, also some enzymes. In this review, we aim to provide a complex view on the present knowledge about vitamin A ranging from its sources through its physiological functions to consequences of its deficiency and metabolic fate up to possible pharmacological administration and potential toxicity. Current analytical methods used for its detection in real samples are included as well.
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- 2021
38. Retinoids Decrease Soluble MICA Concentration by Inhibiting the Enzymatic Activity of ADAM9 and ADAM10
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Hitoshi Yoshida, Masayuki Tojo, Yoko Nakajima, Yuu Shimozuma, Masashi Sakaki, Ikuya Sugiura, Naoya Kato, Manabu Uchikoshi, Ryo Nakagawa, Shojiro Uozumi, Yuki Ichikawa, Yumi Otoyama, Jun Arai, Ryosuke Muroyama, Hisako Nozawa, Atsushi Kajiwara, and Kaku Goto
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Cancer Research ,medicine.drug_class ,Cell Survival ,Pyridines ,Retinoic acid ,Retinoid receptor ,chemistry.chemical_compound ,ADAM10 Protein ,Retinoids ,Cell Line, Tumor ,MHC class I ,medicine ,Humans ,Retinoid ,Cytotoxicity ,Receptor ,biology ,Molecular Structure ,Chemistry ,Phenylurea Compounds ,Histocompatibility Antigens Class I ,Membrane Proteins ,Drug Synergism ,General Medicine ,Hep G2 Cells ,Sheddase ,digestive system diseases ,ADAM Proteins ,Retinoid X Receptors ,Oncology ,Solubility ,Cell culture ,biology.protein ,Cancer research ,Biocatalysis ,RNA Interference - Abstract
Background/aim The association between MHC class I polypeptide-related sequence A (MICA) and hepatocellular carcinoma (HCC) development was identified in our previous genome-wide association study. Decreasing soluble MICA (sMICA) through MICA sheddases suppression facilitates natural killer (NK) cell-mediated cytotoxicity. The expression of ADAM9 in HCC has been correlated with poor prognosis, and our recent study showed that its suppression contributes to cancer elimination by decreasing sMICA. Materials and methods Human HCC cell line PLC/PRF/5 and HepG2 cells were used. sMICA levels were measured by ELISA. Expression of retinoid X receptors (RXRs) and retinoic acid receptors (RARs) was knocked down by siRNA. Results In our screening of FDA-approved drugs in vitro, retinoids were found to be efficient ADAM9 and ADAM10 inhibitors. Treatment with retinoids reduced sMICA levels in human HCC cells. Interestingly, the effects were abrogated by depletion of the retinoid receptor RXRα. Conclusion Retinoids can be potential novel agents for HCC treatment.
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- 2021
39. Retinoids in Oncology: Conclusions and Future Directions
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Degos, Laurent, Parkinson, David R., Degos, Laurent, editor, and Parkinson, David R., editor
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- 1995
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40. Activated retinoid receptors are required for the migration and fate maintenance of subsets of cortical neurons.
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Jeonghoon Choi, Sungjin Park, and Sockanathan, Shanthini
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NEURONS , *HIGHER nervous activity , *RETINOIC acid receptors , *MICRODIALYSIS , *ANIMAL models in research - Abstract
Layer-specific cortical neurons are essential components of local, intracortical and subcortical circuits and are specified by complex signaling pathways acting on cortical progenitors. However, whether extrinsic signals contribute to postmitotic cortical neuronal development is unclear. Here we show in mice that retinoic acid (RA) receptors are activated in newly born migrating cortical neurons indicative of endogenous RA in the cortex. Disruption of RA signaling in postmitotic neurons by dominant-negative retinoid receptor RAR403 expression specifically delays late-born cortical neuron migration in vivo. Moreover, prospective layer V-III neurons that express RAR403 fail to maintain their fates and instead acquire characteristics of layer II neurons. This latter phenotype is rescued by active forms of β-catenin at central and caudal but not rostral cortical regions. Taken together, these observations suggest that RA signaling pathways operate postmitotically to regulate the onset of radial migration and to consolidate regional differences in cortical neuronal identity. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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41. Activation of retinoid receptor-mediated signaling ameliorates diabetes-induced cardiac dysfunction in Zucker diabetic rats
- Author
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Guleria, Rakeshwar S., Singh, Amar B., Nizamutdinova, Irina T., Souslova, Tatiana, Mohammad, Amin A., Kendall, Jonathan A., Baker, Kenneth M., and Pan, Jing
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RETINOID X receptors , *CELLULAR signal transduction , *GENETICS of diabetes , *HEART diseases , *ZUCKER rats , *HOMEOSTASIS , *OXIDATIVE stress - Abstract
Abstract: Diabetic cardiomyopathy (DCM) is a significant contributor to the morbidity and mortality associated with diabetes and metabolic syndrome. Retinoids, through activation of retinoic acid receptor (RAR) and retinoid x receptor (RXR), have been linked to control glucose and lipid homeostasis, with effects on obesity and diabetes. However, the functional role of RAR and RXR in the development of DCM remains unclear. Zucker diabetic fatty (ZDF) and lean rats were treated with Am580 (RARα agonist) or LGD1069 (RXR agonist) for 16 weeks, and cardiac function and metabolic alterations were determined. Hyperglycemia, hyperlipidemia and insulin resistance were observed in ZDF rats. Diabetic cardiomyopathy was characterized in ZDF rats by increased oxidative stress, apoptosis, fibrosis, inflammation, activation of MAP kinases and NF-κB signaling and diminished Akt phosphorylation, along with decreased glucose transport and increased cardiac lipid accumulation, and ultimately diastolic dysfunction. Am580 and LGD1069 attenuated diabetes-induced cardiac dysfunction and the pathological alterations, by improving glucose tolerance and insulin resistance; facilitating Akt activation and glucose utilization, and attenuating oxidative stress and interrelated MAP kinase and NF-κB signaling pathways. Am580 inhibited body weight gain, attenuated the increased cardiac fatty acid uptake, β-oxidation and lipid accumulation in the hearts of ZDF rats. However, LGD1069 promoted body weight gain, hyperlipidemia and cardiac lipid accumulation. In conclusion, our data suggest that activation of RAR and RXR may have therapeutic potential in the treatment of diabetic cardiomyopathy. However, further studies are necessary to clarify the role of RAR and RXR in the regulation of lipid metabolism and homeostasis. [Copyright &y& Elsevier]
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- 2013
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42. RXRα deletion and E6E7 oncogene expression are sufficient to induce cervical malignant lesions in vivo
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Ocadiz-Delgado, Rodolfo, Castañeda-Saucedo, Eduardo, Indra, Arup K., Hernandez-Pando, Rogelio, Flores-Guizar, Pedro, Cruz-Colin, Jose Luis, Recillas-Targa, Felix, Perez-Ishiwara, Guillermo, Covarrubias, Luis, and Gariglio, Patricio
- Subjects
- *
CERVICAL cancer , *ONCOGENES , *GENE expression , *DELETION mutation , *TUMOR growth , *HOMEOSTASIS , *NUCLEAR receptors (Biochemistry) , *CELL differentiation , *APOPTOSIS , *PAPILLOMAVIRUS diseases , *DISEASE risk factors - Abstract
Abstract: Cervical cancer is the second leading cause of cancer deaths among women worldwide. High-Risk-Human Papillomaviruses (HR-HPVs) play an important etiologic role in the development of carcinoma of the uterine cervix. However, host factors are important in determining the outcome of genital HPV infection as most cervical precancerous lesions containing HR-HPVs do not progress to invasive carcinomas. Retinoids, acting through nuclear receptors (RARs, RXRs), play a crucial role in cervix development and homeostasis regulating growth and differentiation of a wide variety of cell types; indeed, they can inhibit cell proliferation, and induce cell differentiation or apoptotic cell death. Here we introduce a mouse model that develops spontaneously malignant cervical lesions allowing the study of the cooperative effect between HPV16E6E7 expression and the lack of RXRα in cervical cancer development. This model could be useful to study multistep carcinogenesis of uterine cervix tissue and might improve chemopreventive and chemotherapeutic strategies for this neoplasia. [Copyright &y& Elsevier]
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- 2012
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43. Keratinocyte differentiation induced by calcium, phorbol ester or interferon-γ elicits distinct changes in the retinoid signalling pathways
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Karlsson, Teresa, Vahlquist, Anders, and Törmä, Hans
- Subjects
- *
PHYSIOLOGICAL effects of calcium , *PHORBOL esters , *INTERFERONS , *RETINOIDS , *CELLULAR signal transduction , *TRETINOIN , *POLYMERASE chain reaction ,KERATINOCYTE differentiation - Abstract
Abstract: Background: Retinoids influence keratinocyte proliferation and differentiation via binding to nuclear retinoic acid receptors (RARα, -γ) and retinoid X receptor α (RXRα). The effect of keratinocyte differentiation on expression of nuclear retinoid receptors and on the conversion of retinol into retinoic acid has not been examined earlier in depth. Objectives: Our aim was to examine the expression of retinoid receptors and a retinoid-regulated gene CRABPII, as well as the metabolism of exogenous [3H]retinol in cultured human keratinocytes induced to differentiate by exposure to either calcium, phorbol 12-myristate 13-acetate (PMA), or interferon-γ (IFNγ). Methods: Normal human keratinocytes were cultured and exposed to differentiation-inducing agents. The mRNA and protein expression of retinoid receptors were examined using real-time PCR and Western blot. [3H]Retinol uptake and metabolism was monitored by HPLC with on-line radioactivity detection. Results: In calcium-exposed cells, increased expression of RARγ and RXRα, enhanced metabolism of [3H]retinol to 3,4-didehydro-RA (ddRA), and an induction of CRABPII mRNA and protein was noted. In contrast, treatment with PMA and IFNγ reduced the RARγ and RXRα protein expression (preventable by the proteasome inhibitor MG132), increased the accumulation of [3H]RA and/or [3H]ddRA in the cells, and changed the CRABPII transcription. Conclusions: Retinoid signalling is profoundly altered upon differentiation of keratinocytes and the effects depend on how cellular differentiation is initiated. [Copyright &y& Elsevier]
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- 2010
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44. Vitamin A/retinoids signalling in the human lung
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Poulain, Stéphane, Evenou, Fanny, Carré, Marie-Christiane, Corbel, Serge, Vignaud, Jean-Michel, and Martinet, Nadine
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VITAMIN A , *CELLULAR signal transduction , *LUNG cancer risk factors , *CANCER chemoprevention , *CLINICAL trials , *ALDEHYDE dehydrogenase , *CARRIER proteins - Abstract
Abstract: Vitamin A is used as a generic term for all vitamin A derivatives with retinol-like biological activity. Retinol is the main parent compound for vitamin A. It derives from carotenoids (provitamin A) and also directly from the pre-formed vitamin A contained in the diet. The term “retinoid” is a generic descriptor of compounds structurally related to vitamin A and the synthetic analogues of retinol with or without biological activity. Retinoic acid is the active cellular catabolite. Vitamin A/retinoids have been given cancer-preventive functions and subsequently used in clinical trials to reduce lung cancer incidence in high-risk individuals. The results obtained have been in contradiction with both in vivo and in vitro promising studies. It seems therefore necessary to develop a better understanding of the vitamin A/retinoids signalling pathways in the lung. With this aim, we summarise the relevant knowledge focussed on the lung. [Copyright &y& Elsevier]
- Published
- 2009
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45. Distribution of the cellular retinoic acid binding protein CRABP-I in the developing chick optic tectum
- Author
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Propping, Corinna, Mönig, Benedikt, Luksch, Harald, and Mey, Jörg
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TRETINOIN , *CARRIER proteins , *FAT-soluble vitamins , *DEVELOPMENTAL biology - Abstract
Abstract: Vitamin A is a major morphogen for the visual system. Most of its effects are mediated by retinoic acid (RA), whose developmental functions include pattern formation, neuronal differentiation and possibly axonal guidance. Although RA has been suggested to regulate development of the retina and its central projection, little is known about the distribution of retinoid receptors and binding proteins in the optic tectum, which in birds is the direct target of most retinofugal axons. We investigated the spatial and temporal distribution of the cellular retinoic acid binding protein-I (CRABP-I) in the chick midbrain. While the precise role of CRABP-I is still unknown, this is an intracellular transport protein for RA, which tends to be expressed in cells that are responsive to retinoic acid. Our data show immunoreactivity of CRABP-I in the tectal anlage at E2.5 and during the entire period of embryonic development. It was found in differentiating neurons of the generative zone, in migrating cells of the prospective stratum griseum et fibrosum superficiale and in mature neurons in this layer. In addition, we detected retinoid receptors RARα, RARβ, RXRα, RXRβ and RXRγ in the developing tectum. Cell culture experiments demonstrate CRABP-I expression in a subpopulation of tectal neurons as they differentiate in vitro. These results are consistent with a regulatory role of RA in tectal neurogenesis and physiology. [Copyright &y& Elsevier]
- Published
- 2007
- Full Text
- View/download PDF
46. MiRNAs are Unlikely to be Involved in Retinoid Receptor Gene Regulation in Pancreatic Cancer Cells
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Tim Bleul, Shuai Yin, Alexandr V. Bazhin, Orkhan Isayev, Jens Werner, and Yifan Zhu
- Subjects
0301 basic medicine ,Physiology ,medicine.drug_class ,Blotting, Western ,Retinoic acid ,Retinoid receptor ,Biology ,Retinoid X receptor ,Real-Time Polymerase Chain Reaction ,lcsh:Physiology ,lcsh:Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Line, Tumor ,Pancreatic cancer ,microRNA ,medicine ,Humans ,lcsh:QD415-436 ,Retinoid ,Receptor ,3' Untranslated Regions ,Regulation of gene expression ,Base Sequence ,lcsh:QP1-981 ,Retinoid receptors ,Antagomirs ,Proto-Oncogene Proteins c-met ,medicine.disease ,Pancreatic Neoplasms ,MicroRNAs ,Retinoid X Receptors ,030104 developmental biology ,chemistry ,Cancer research ,MiRNA ,Sequence Alignment - Abstract
Background/Aims: Retinoid receptors and retinoic acid were reported to be down-regulated in pancreatic duct adenocarcinoma (PDAC) compared to normal pancreas. Yet the mechanism of the down-regulation of retinoid receptors is not well defined. The aim of this study was to find out whether selected dysregulated miRNAs in PDAC are responsible for the decreased level of retinoid receptors. Methods: Bioinformatics, real-time PCR, western blot analysis as well as molecular manipulation with miRNA in cells of PDAC were carried out. Results: We first performed bioinformatics research to identify conserved target sequences for deregulated miRNAs within the 3' UTR region of retinoid receptor mRNA. This research revealed binding sites for miR-138, -27a, -27b, -206, -613, -9-5p, -27a/b-3p and -27a. Next, we investigated the expression of selected retinoid receptors and miRNAs in PDAC cell lines and in the Human Pancreatic Duct Epithelial (HPDE) cell line. Further, we investigated the effects of modifying expression levels of selected miRNAs using miRNA inhibitors or mimics. We demonstrated that none of these miRNAs can target the selected retinoid receptors in vitro. Conclusions: miR-27a, miR-27b, miR-9, miR10a and miR-10b were up-regulated in PDAC cells compared to HPDE cells. The up-regulation of these miRNAs was not responsible for the down-regulation of RARa, RAR beta, RXRa and RXR beta in PDAC cells. (C) 2017 The Author(s) Published by S. Karger AG, Basel
- Published
- 2017
47. Expression of retinoid receptors in multiple cell lineages in the gastric mucosae of mice and humans.
- Author
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Karam, Sherif M., Hassan, Wail M., and John, Rony
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RETINOIDS , *GASTRIC mucosa , *CELL differentiation , *VITAMIN A , *GASTROINTESTINAL mucosa , *CELL growth , *IMMUNOHISTOCHEMISTRY , *GASTROENTEROLOGY - Abstract
Background and Aim: In mice and humans, the gastric epithelial progenitors undergo proliferation and bipolar migration from the isthmus associated with their differentiation into mucus-, acid- and pepsinogen-secreting cell lineages. Little is known about factors that control the dynamics of these isthmal progenitor cells. Retinoids have long been known as chemopreventive agents against gastric mucosal damage and carcinogenesis. The aim of the present study was to examine the cellular localization of the various retinoid receptors proteins (RAR and RXR) in the gastric epithelium of mice and humans. Methods: Gastric antral biopsies of normal individuals and the oxyntic and antral regions of the mouse stomach were processed for immunohistochemistry using anti-RAR and anti-RXR antibodies. To label the progenitor cell zone, some sections were also probed with antibodies specific for proliferating cell nuclear antigen. Results: The immunoprobed oxyntic mucosal sections of the mice showed that RXRβ protein was present in the epithelial isthmal cells, neck cells, zymogenic cells and some pit and parietal cells. In addition, RARβ was found in isthmal and neck cells, and RARγ was mainly found in neck cells. In the mouse antrum, only RXRβ was detected in the isthmal cells and their pit and gland cell descendents. In humans, immunoprobed antral sections showed that RARβ, RARγ, RXRα and RXRγ proteins are expressed in the isthmal, pit and gland cells. Conclusions: Retinoid receptors are expressed in multiple cell lineages of the mouse and human gastric epithelium and may, therefore, account for the possible effects of retinoids on gastric epithelial cell proliferation and differentiation. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
48. Retinoid-induced mu opioid receptor expression by phytohemagglutinin-stimulated U937 cells.
- Author
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Royal III, Walter, Leander, Michelle V., and Bissonnette, Reid
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OPIOIDS , *HIV infections , *IMMUNITY , *CELL physiology , *IMMUNOLOGY , *CELL lines - Abstract
Opioid use may be associated with an increased risk of neurological disease in human immunodeficiency virus (HIV) infection through effects on immune cell function. Studies were performed to examine the effects of specific retinoid receptor activation on mu opioid receptor (MOR) production by phytohemagglutinin (PHA)-stimulated U937 cells, a mononuclear cell line. PHA stimulation increased activation of the MOR promoter as well as levels of MOR mRNA, total receptor protein in cell lysates, and surface and cytoplasmic receptor expression. Retinoid X receptor (RXR) agonist and retinoic acid receptor (RAR) antagonist further increased MOR expression by the PHA-stimulated cells. In contrast, MOR expression was suppressed by RAR agonist and by RXR antagonist. Finally, opioid receptor binding was also increased by RXR agonist and RXR antagonist; no increase in binding occurred in the presence of RAR agonists and RXR antagonist. All together, these studies suggest that MOR expression in U937 cells can be differentially regulated by specific retinoid receptor activation. Such effects may have important clinical relevance for opioid users with HIV infection, including individuals with neurological disease. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
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49. Immunofluorescence Localization of Nuclear Retinoid Receptors in Psoriasis Versus Normal Human Skin.
- Author
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Karlsson, Teresa, Rollman, Ola, Vahlquist, Anders, and Törmä, Hans
- Subjects
- *
IMMUNOFLUORESCENCE , *RETINOIDS , *PSORIASIS , *SKIN diseases , *SKIN , *DERMATOLOGY - Abstract
Psoriasis responds favourably to treatment with retinoids but the cellular pathways mediating these effects are poorly understood. Retinoids regulate keratinocyte proliferation and maturation via binding to nuclear retinoic acid receptors (mainly RARα and RARγ) which form heterodimers with the 9-cis-RA receptor, RXRα. We have previously shown that mRNA expression of RARα and RXRα is down-regulated in psoriatic lesions as compared with non-lesional human skin. In the present study, we investigated the protein expression of RARα, RARγ and RXRα in normal and psoriatic skin using indirect immunofluorescence analysis. Epidermal keratinocytes of normal and non-lesional psoriatic skin displayed similar nuclear localization of all three receptors; RARα was detected with decreasing intensity from basal to suprabasal layers, RARγ showed the opposite trend, whereas RXRα was evenly expressed throughout the epidermis. In lesional psoriatic skin, however, all three receptor proteins showed a much higher staining intensity in the lower half of the epidermis; in particular, RARα immunoreactivity was low or even absent in the upper layers of epidermis. The results support the idea that psoriasis is associated with abnormal retinoid signalling in lesional epidermis. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
50. Global analysis of three-state protein unfolding data.
- Author
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Harder, Mark E., Deinzer, Max L., Leid, Mark E., and Schimerlik, Michael I.
- Abstract
A new method for analyzing three-state protein unfolding equilibria is described that overcomes the difficulties created by direct effects of denaturants on circular dichroism (CD) and fluorescence spectra of the intermediate state. The procedure begins with a singular value analysis of the data matrix to determine the number of contributing species and perturbations. This result is used to choose a fitting model and remove all spectra from the fitting equation. Because the fitting model is a product of a matrix function which is nonlinear in the thermodynamic parameters and a matrix that is linear in the parameters that specify component spectra, the problem is solved with a variable projection algorithm. Advantages of this procedure are perturbation spectra do not have to be estimated before fitting, arbitrary assumptions about magnitudes of parameters that describe the intermediate state are not required, and multiple experiments involving different spectroscopic techniques can be simultaneously analyzed. Two tests of this method were performed: First, simulated three-state data were analyzed, and the original and recovered thermodynamic parameters agreed within one standard error, whereas recovered and original component spectra agreed within 0.5%. Second, guanidine-induced unfolding titrations of the human retinoid-X-receptor ligand-binding domain were analyzed according to a three-state model. The standard unfolding free energy changes in the absence of guanidine and the guanidine concentrations at zero free-energy change for both transitions were determined from a joint analysis of fluorescence and CD spectra. Realistic spectra of the three protein states were also obtained. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
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