300 results on '"Reproductive Genetics"'
Search Results
2. Evaluation of an Updated Gene Panel as a Diagnostic Tool for Both Male and Female Infertility.
- Author
-
Okutman, Özlem, Gürbüz, Ali Sami, Salvarci, Ahmet, Büyük, Umut, Ruso, Halil, Gürgan, Timur, Tarabeux, Julien, Leuvrey, Anne-Sophie, Nourisson, Elsa, Lang, Cécile, Muller, Jean, and Viville, Stephane
- Abstract
In recent years, an increasing number of genes associated with male and female infertility have been identified. The genetics of infertility is no longer limited to the analysis of karyotypes or specific genes, and it is now possible to analyse several dozen infertility genes simultaneously. Here, we present the diagnostic activity over the past two years including 140 patients (63 women and 77 men). Targeted sequencing revealed causative variants in 17 patients, representing an overall diagnostic rate of 12.1%, with prevalence rates in females and males of 11% and 13%, respectively. The gene-disease relationship (GDR) was re-evaluated for genes due to the addition of new patients and/or variants in the actual study. Five genes changed categories: two female genes (MEIOB and TBPL2) moved from limited to moderate; two male genes (SOHLH1 and GALNTL5) moved from no evidence to strong and from limited to moderate; and SEPTIN12, which was unable to classify male infertility, was reclassified as limited. Many infertility genes have yet to be identified. With the increasing integration of genetics in reproductive medicine, the scope of intervention extends to include other family members, in addition to individual patients or couples. Genetic counselling consultations and appropriate staffing will need to be established in fertility centres. Trial registration number: Not applicable. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Circulating anti-Müllerian hormone levels in pre-menopausal women: novel genetic insights from a genome-wide association meta-analysis.
- Author
-
Pujol-Gualdo, Natàlia, Karjalainen, Minna K, Võsa, Urmo, Arffman, Riikka K, Mägi, Reedik, Ronkainen, Justiina, Laisk, Triin, and Piltonen, Terhi T
- Subjects
- *
ANTI-Mullerian hormone , *OVARIAN reserve , *GENETIC correlations , *GENOME-wide association studies , *GENETIC variation , *REGIONAL development , *OVARIAN follicle - Abstract
STUDY QUESTION Can a genome-wide association study (GWAS) meta-analysis, including a large sample of young premenopausal women from a founder population from Northern Finland, identify novel genetic variants for circulating anti-Müllerian hormone (AMH) levels and provide insights into single-nucleotide polymorphism enrichment in different biological pathways and tissues involved in AMH regulation? SUMMARY ANSWER The meta-analysis identified a total of six loci associated with AMH levels at P < 5 × 10−8, three of which were novel in or near CHEK2 , BMP4 , and EIF4EBP1 , as well as highlighted significant enrichment in renal system vasculature morphogenesis, and the pituitary gland as the top associated tissue in tissue enrichment analysis. WHAT IS KNOWN ALREADY AMH is expressed by preantral and small antral stage ovarian follicles in women, and variation in age-specific circulating AMH levels has been associated with several health conditions. However, the biological mechanisms underlying the association between health conditions and AMH levels are not yet fully understood. Previous GWAS have identified loci associated with AMH levels in pre-menopausal women, in or near MCM8 , AMH , TEX41 , and CDCA7. STUDY DESIGN, SIZE, DURATION We performed a GWAS meta-analysis for circulating AMH level measurements in 9668 pre-menopausal women. PARTICIPANTS/MATERIALS, SETTING, METHODS We performed a GWAS meta-analysis in which we combined 2619 AMH measurements (at age 31 years) from a prospective founder population cohort (Northern Finland Birth Cohort 1966, NFBC1966) with a previous GWAS meta-analysis that included 7049 pre-menopausal women (age range 15–48 years) (N = 9668). NFBC1966 AMH measurements were quantified using an automated assay. We annotated the genetic variants, combined different data layers to prioritize potential candidate genes, described significant pathways and tissues enriched by the GWAS signals, identified plausible regulatory roles using colocalization analysis, and leveraged publicly available summary statistics to assess genetic and phenotypic correlations with multiple traits. MAIN RESULTS AND THE ROLE OF CHANCE Three novel genome-wide significant loci were identified. One of these is in complete linkage disequilibrium with c.1100delC in CHEK2 , which is found to be 4-fold enriched in the Finnish population compared to other European populations. We propose a plausible regulatory effect of some of the GWAS variants linked to AMH, as they colocalize with GWAS signals associated with gene expression levels of BMP4 , TEX41 , and EIFBP41. Gene set analysis highlighted significant enrichment in renal system vasculature morphogenesis, and tissue enrichment analysis ranked the pituitary gland as the top association. LARGE SCALE DATA The GWAS meta-analysis summary statistics are available for download from the GWAS Catalogue with accession number GCST90428625. LIMITATIONS, REASONS FOR CAUTION This study only included women of European ancestry and the lack of sufficiently sized relevant tissue data in gene expression datasets hinders the assessment of potential regulatory effects in reproductive tissues. WIDER IMPLICATIONS OF THE FINDINGS Our results highlight the increased power of founder populations and larger sample sizes to boost the discovery of novel trait-associated variants underlying variation in AMH levels, which aided the characterization of GWAS signals enrichment in different biological pathways and plausible genetic regulatory effects linked with AMH level variation for the first time. STUDY FUNDING/COMPETING INTEREST(S) This work has received funding from the European Union's Horizon 2020 Research and Innovation Programme under the MATER Marie Sklodowska-Curie Grant Agreement No. 813707 and Oulu University Scholarship Foundation and Paulon Säätiö Foundation. (N.P.-G.), Academy of Finland, Sigrid Jusélius Foundation, Novo Nordisk, University of Oulu, Roche Diagnostics (T.T.P.). This work was supported by the Estonian Research Council Grant 1911 (R.M.). J.R. was supported by the European Union's Horizon 2020 Research and Innovation Program under Grant Agreements No. 874739 (LongITools), 824989 (EUCAN-Connect), 848158 (EarlyCause), and 733206 (LifeCycle). U.V. was supported by the Estonian Research Council grant PRG (PRG1291). The NFBC1966 received financial support from University of Oulu Grant No. 24000692, Oulu University Hospital Grant No. 24301140, and ERDF European Regional Development Fund Grant No. 539/2010 A31592. T.T.P. has received grants from Roche, Perkin Elmer, and honoraria for scientific presentations from Gedeon Richter, Exeltis, Astellas, Roche, Stragen, Astra Zeneca, Merck, MSD, Ferring, Duodecim, and Ajaton Terveys. For all other authors, there are no competing interests. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
4. Preimplantation Genetic Testing
- Author
-
Singh, Sarabpreet, D’Souza, Fiona Olvitta, and Singh, Rajender, editor
- Published
- 2023
- Full Text
- View/download PDF
5. More than sample providers: how genetic researchers in Pakistan mobilized a prenatal diagnostic service for thalassemia.
- Author
-
Sheikh, Zainab Afshan and Wahlberg, Ayo
- Subjects
- *
DIAGNOSTIC services , *MEDICAL genetics , *THALASSEMIA , *MEDICAL genomics , *GLOBIN genes ,DEVELOPING countries - Abstract
While unequally resourced partners from the so-called global South are often considered 'mere sample providers' in larger international genomics collaborations, in this paper, we show how they strategically work to mobilize their role in a global system of tissue exchange to deliver services for local communities. We unpack how a prenatal diagnostic service for thalassemia in Pakistan emerged out of the maneuvering efforts of internationally connected Pakistani researchers. By tracing the distributed capacities that emerged and circulated as they set about improving medical genetics in Pakistan, we outline some key conditions that led to the establishment of the service: first, the scale of unmet needs that geneticists faced when collecting data as part of their research that made medical genomics a relevant field; secondly, joint efforts between researchers and physicians that were engaged with the challenge of decreasing disease prevalence through diagnostics and abortion; and finally, the ways in which international research collaborations helped generate resources to improve medical genetics in Pakistan. To understand how genetic research and medicine is currently being developed in Pakistan, we need to ethnographically re-center our analyses in ways that allow us to identify the resourceful ways in which researchers maneuvre to secure locally relevant outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
6. A systematic review and evidence assessment of monogenic gene–disease relationships in human female infertility and differences in sex development.
- Author
-
Kelen, Annelore Van Der, Okutman, Özlem, Javey, Elodie, Serdarogullari, Münevver, Janssens, Charlotte, Ghosh, Manjusha S, Dequeker, Bart J H, Perold, Florence, Kastner, Claire, Kieffer, Emmanuelle, Segers, Ingrid, Gheldof, Alexander, Hes, Frederik J, Sermon, Karen, Verpoest, Willem, and Viville, Stéphane
- Subjects
- *
FEMALE infertility , *MALE infertility , *GENITALIA , *GENETIC variation , *HUMAN genetics , *GENETIC counseling - Abstract
BACKGROUND As in other domains of medicine, high-throughput sequencing methods have led to the identification of an ever-increasing number of gene variants in the fields of both male and female infertility. The increasing number of recently identified genes allows an accurate diagnosis for previously idiopathic cases of female infertility and more appropriate patient care. However, robust evidence of the gene–disease relationships (GDR) allowing the proper translation to clinical application is still missing in many cases. OBJECTIVE AND RATIONALE An evidence-based curation of currently identified genes involved in female infertility and differences in sex development (DSD) would significantly improve both diagnostic performance and genetic research. We therefore performed a systematic review to summarize current knowledge and assess the available GDR. SEARCH METHODS PRISMA guidelines were applied to curate all available information from PubMed and Web of Science on genetics of human female infertility and DSD leading to infertility, from 1 January 1988 to 1 November 2021. The reviewed pathologies include non-syndromic as well as syndromic female infertility, and endocrine and reproductive system disorders. The evidence that an identified phenotype is caused by pathogenic variants in a specific gene was assessed according to a standardized scoring system. A final score (no evidence, limited, moderate, strong, or definitive) was assigned to every GDR. OUTCOMES A total of 45 271 publications were identified and screened for inclusion of which 1078 were selected for gene and variant extraction. We have identified 395 genes and validated 466 GDRs covering all reported monogenic causes of female infertility and DSD. Furthermore, we present a genetic diagnostic flowchart including 105 genes with at least moderate evidence for female infertility and suggest recommendations for future research. The study did not take into account associated genetic risk factor(s) or oligogenic/polygenic causes of female infertility. WIDER IMPLICATIONS We have comprehensively reviewed the existing research on the genetics of female infertility and DSD, which will enable the development of diagnostic panels using validated genes. Whole genome analysis is shifting from predominantly research to clinical application, increasing its diagnostic potential. These new diagnostic possibilities will not only decrease the number of idiopathic cases but will also render genetic counselling more effective for infertile patients and their families. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
7. The effects of an online decision aid to support the reproductive decision‐making process of genetically at risk couples—A pilot study.
- Author
-
Severijns, Yil, Heijmans, Maartje W. F., de Die‐Smulders, Christine E. M., Bijlsma, Emilia K., Corsten‐Janssen, Nicole, Joosten, Sara J. R., van Kuijk, Sander M. J., Lichtenbelt, Klaske D., Ottenheim, Cecile P. E., Stuurman, Kyra E., Tan‐Sindhunata, Gita M. B., de Vries, Hein, and van Osch, Liesbeth A. D. M.
- Abstract
Couples at risk of transmitting a genetic disease to their offspring may experience doubts about their reproductive options. This study examines the effects of an online decision aid (DA) on the (joint) reproductive decision‐making process of couples (not pregnant at time of inclusion) at risk of transmitting a genetic disease to their offspring. The primary outcome is decisional conflict, and secondary outcomes are knowledge, realistic expectations, deliberation, joint informed decision‐making, and decisional self‐efficacy. These outcomes were measured with a pretest–posttest design: before use (T0), after use (T1), and 2 weeks after use (T2) of the decision aid (DA). Usability of the DA was assessed at T1. Paired sample t‐tests were used to compute differences between baseline and subsequent measurements. The comparisons of T0‐T1 and T0‐T2 indicate a significant reduction in mean decisional conflict scores with stronger effects for participants with high baseline decisional conflict scores. Furthermore, use of the DA led to increased knowledge, improved realistic expectations, and increased levels of deliberation, with higher increase in participants with low baseline scores. Decision self‐efficacy only improved for participants with lower baseline scores. Participants indicated that the information in the DA was comprehensible and clearly organized. These first results indicate that this online DA is an appropriate tool to support couples at risk of transmitting a genetic disease and a desire to have (a) child(ren) in their reproductive decision‐making process. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
8. Disparities in access to reproductive genetic services associated with geographic location of residence and maternal race and ethnicity.
- Author
-
Talati AN, Mallampati DP, Hardisty EE, Gilmore KL, and Vora NL
- Subjects
- Humans, Female, Adult, Pregnancy, Retrospective Studies, Healthcare Disparities ethnology, Rural Population, Genetic Counseling statistics & numerical data, Genetic Services statistics & numerical data, Genetic Testing statistics & numerical data, Racial Groups genetics, Aneuploidy, Prenatal Diagnosis statistics & numerical data, Health Services Accessibility statistics & numerical data, Ethnicity genetics
- Abstract
Purpose: To describe the association between geographic location of residence and use of aneuploidy screening or prenatal genetic counseling and how it is modified by maternal race and ethnicity., Methods: Retrospective cohort of individuals at a tertiary care center between 2017-2019. County of residence was classified as rural or metropolitan based in US Office of Management and Budget 2019 definitions. Maternal race and ethnicity were self-identified. Our composite outcome was defined as use of aneuploidy screening or genetic counseling visit. The composite outcome was compared by geographic location and ethnicity. Logistic regression was used to model the relationship between geographic location and the composite outcome., Results: A total of 8774 pregnancies were included. Of these, 4770 (54%) had genetic screening, and 3781 (43%) had at least 1 genetic counseling visit. Rural patients were significantly less likely to have the composite outcome compared with metropolitan peers (37.1% vs 47.2%, P < .001). In addition, we identified differences in the composite outcome between White rural patients and LatinX rural patients (37.7% vs 35.6%, P < .001) and between Asian rural patients and LatinX and Black rural patients (41.0% vs 35.6%, P < .001; 41.0% vs 36.8%, P < .001). Logistic regression demonstrated that rural patients were significantly less likely to have the composite outcome compared with metropolitan peers, after adjusting for LatinX ethnicity and gestational age at first prenatal visit (OR 0.72, [0.55, 0.95], P = .002)., Conclusion: Rural, minority patients were significantly less likely to receive reproductive genetic services compared with metropolitan peers extending our knowledge of disparities in maternity care., Competing Interests: Conflict of Interest Asha N. Talati receives research support from the National Institutes of Health, Billion to One, and The Greenwall Foundation. Divya P. Mallampati receives salary support from the Department of Health and Human Services. Neeta L. Vora receives research support from National Institutes of Health and received supplies in kind from Illumina unrelated to this research., (Copyright © 2024. Published by Elsevier Inc.)
- Published
- 2024
- Full Text
- View/download PDF
9. Genetics in reproductive medicine.
- Author
-
Ochando I, Urbano A, and Rueda J
- Abstract
Thanks to advances in technology, genetic testing is now available to explore the causes of infertility and to assess the risk of a given couple passing on a genetic disorder to their offspring. This allows at-risk couples to make an informed decision when opting for assisted reproduction and allows professionals to offer pre-implantation diagnosis when appropriate. Genetic screening of an infertile couple has thus become standard practice for an appropriate diagnosis, treatment, and prognostic assessment. This review aims to highlight the conditions under which genetic screening plays a role in improving reproductive outcomes for infertile couples., Competing Interests: Conflict of Interest The authors declare no competing interests., (Copyright © 2024 Instituto Mexicano del Seguro Social (IMSS). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
10. Editorial: Reproductive genomics.
- Author
-
Rong Liu, Yan Yun, Wenjie Shu, Xi Wang, and Mengcheng Luo
- Subjects
GENOMICS ,GENETIC testing ,REPRODUCTIVE health - Published
- 2022
- Full Text
- View/download PDF
11. Machine learning based prediction models in male reproductive health: Development of a proof‐of‐concept model for Klinefelter Syndrome in azoospermic patients.
- Author
-
Krenz, Henrike, Sansone, Andrea, Fujarski, Michael, Krallmann, Claudia, Zitzmann, Michael, Dugas, Martin, Kliesch, Sabine, Varghese, Julian, Tüttelmann, Frank, and Gromoll, Jörg
- Subjects
- *
KLINEFELTER'S syndrome , *MALE reproductive health , *SUPERVISED learning , *MALE models , *MACHINE learning - Abstract
Background: Due to the highly variable clinical phenotype, Klinefelter Syndrome is underdiagnosed. Objective: Assessment of supervised machine learning based prediction models for identification of Klinefelter Syndrome among azoospermic patients, and comparison to expert clinical evaluation. Materials and methods: Retrospective patient data (karyotype, age, height, weight, testis volume, follicle‐stimulating hormone, luteinizing hormone, testosterone, estradiol, prolactin, semen pH and semen volume) collected between January 2005 and June 2019 were retrieved from a patient data bank of a University Centre. Models were trained, validated and benchmarked based on different supervised machine learning algorithms. Models were then tested on an independent, prospectively acquired set of patient data (between July 2019 and July 2020). Benchmarking against physicians was performed in addition. Results: Based on average performance, support vector machines and CatBoost were particularly well‐suited models, with 100% sensitivity and >93% specificity on the test dataset. Compared to a group of 18 expert clinicians, the machine learning models had significantly better median sensitivity (100% vs. 87.5%, p = 0.0455) and fared comparably with regards to specificity (90% vs. 89.9%, p = 0.4795), thereby possibly improving diagnosis rate. A Klinefelter Syndrome Score Calculator based on the prediction models is available on http://klinefelter‐score‐calculator.uni‐muenster.de. Discussion: Differentiating Klinefelter Syndrome patients from azoospermic patients with normal karyotype (46,XY) is a problem that can be solved with supervised machine learning techniques, improving patient care. Conclusions: Machine learning could improve the diagnostic rate of Klinefelter Syndrome among azoospermic patients, even more for less‐experienced physicians. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
12. The Future of IVF: The New Normal in Human Reproduction.
- Author
-
Kushnir, Vitaly A., Smith, Gary D., and Adashi, Eli Y.
- Abstract
Increased demand for in vitro fertilization (IVF) due to socio-demographic trends, and supply facilitated by new technologies, converged to transform the way a substantial proportion of humans reproduce. The purpose of this article is to describe the societal and demographic trends driving increased worldwide demand for IVF, as well as to provide an overview of emerging technologies that promise to greatly expand IVF utilization and lower its cost. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
13. Comparing Germany and Israel regarding debates on policy-making at the beginning of life: PGD, NIPT and their paths of routinization.
- Author
-
Raz, Aviad E., Nov-Klaiman, Tamar, Hashiloni-Dolev, Yael, Foth, Hannes, Schües, Christina, and Rehmann-Sutter, Christoph
- Abstract
Copyright of Ethik in der Medizin is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2022
- Full Text
- View/download PDF
14. Editorial: Emerging New Tests and Their Impact Upon the Practice of Reproductive Genetics
- Author
-
Kwok-yin Leung, Antoni Borrell, Mark I. Evans, and Ming Chen
- Subjects
reproductive genetics ,aneuploidy screening ,expanded carrier screening ,chromosomal microarray analysis ,whole-exome sequencing ,balanced chromosomal abnormalities ,Genetics ,QH426-470 - Published
- 2021
- Full Text
- View/download PDF
15. Not just carriers: experiences of X-linked female heterozygotes.
- Author
-
Choi, Jennifer, Kane, Taylor, Propst, Lauren, Spencer, Sara, Kostialik, Jamie, and Arjunan, Aishwarya
- Subjects
- *
MEDICAL personnel , *GENETIC carriers , *NONPROFIT organizations , *SYMPTOMS , *FEMALES , *X chromosome - Abstract
Purpose: To better understand the needs and experiences of the X-linked carrier community to improve future recognition, diagnosis, and treatment by bringing X-linked carrier voices together. Methods: An anonymous survey link was distributed to members of Remember the Girls, a non-profit organization for female (XX) carriers of X-linked conditions, through its website, Facebook group, Instagram, and Twitter. The survey was developed to gather data on XX carriers of numerous X-linked conditions. Results: One hundred and fifty individuals participated in the study. The majority (81/150) of individuals learned about their carrier status by giving birth to a son diagnosed with an X-linked condition. However, over 80% (120/145) believed that they should learn this information before the age of 18. Over 80% of participants (124/148) felt that they either have or may have symptoms attributable to their X-linked condition. Yet, only 10.1% (15/148) felt that they had sufficient access to knowledgeable healthcare providers and/or medical information. Additionally, 46.7% (70/150) of participants reported that healthcare providers did not discuss reproductive options with them. Improving carrier access to medical information, research studies, new treatments, and reproductive methods was found to be the top priority. Conclusion: Limited information exists on X-linked carriers' risk for symptoms and there is a lack of available treatments. This study demonstrates the need for more knowledgeable healthcare providers and medical information within the X-linked carrier community. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
16. Expanded carrier screening in Flanders (Belgium): an online survey on the perspectives of nonpregnant reproductive-aged women.
- Author
-
Steijvoort, Eva Van, Devolder, Heleen, Geysen, Inne, Epperzeel, Silke Van, Peeters, Hilde, Peeraer, Karen, Matthijs, Gert, and Borry, Pascal
- Abstract
Aim: Despite a considerable interest in expanded carrier screening (ECS) in the general population, actual uptake of ECS remains low. More insights are needed to better understand the perspectives of reproductive-aged individuals. Materials & methods: Nonpregnant women of reproductive age recruited through public pharmacies throughout Flanders (Belgium) were invited to participate in an online survey. Results: Most participants (63.6%) indicated they would consider ECS for themselves in the future. About one in two participants showed a positive attitude toward ECS. Conclusion: This study reports valuable insights in the perspectives of nonpregnant reproductive-aged women in Flanders (Belgium) regarding ECS that can be used in the ongoing debate on the responsible implementation of ECS. Previous studies have reported a considerable interest in carrier screening for hereditary conditions among individuals in the general population, but actual uptake remains low. This study examines the perspectives of nonpregnant reproductive-aged women in Flanders (Belgium) regarding expanded carrier screening (ECS) for hereditary conditions to gain more insights in factors that possibly influence the opinions of reproductive-aged women. These insights are crucial to ensure a responsible implementation of ECS within healthcare services and to make sure that future parents are making informed choices when they are presented with the choice to accept or decline ECS. The results of this study can be used by healthcare providers interacting with couples planning a pregnancy to improve pre-/post-test counseling services. Which in turn can help to manage expectations and reduce misconceptions among potential users of ECS. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
17. Expanded carrier screening for recessively inherited disorders: economic burden and factors in decision-making when one individual in a couple is identified as a carrier.
- Author
-
Shapiro, Alice J., Kroener, Lindsay, and Quinn, Molly M.
- Subjects
- *
ECONOMIC impact , *ENDOCRINOLOGY of human reproduction , *DECISION making , *GENETIC disorders , *GENETIC counseling - Abstract
Purpose: When undergoing expanded carrier screening (ECS), couples are often screened sequentially to reduce need for a second individual's test. It is unknown how often partners of individuals found to be carriers complete the recommended testing with a sequential approach and what factors contribute to decision-making regarding partner testing. Additionally, the economic burden placed on individuals by ECS testing and its effect on partner testing has not been evaluated. Methods: In part 1, all individuals at a university-affiliated reproductive endocrinology and infertility practice identified to be carriers of a recessively inherited mutation using the Counsyl/Foresight ECS were included. Conditions were categorized by severity according to a previously described classification system. In part 2, all individuals who underwent ECS with a single test provider between September 1, 2013 and February 1, 2020 were contacted via email to complete a confidential and anonymized online survey. Results: In part 1, a total of 2061 patients were screened. 36.9% were carriers of one or more recessively inherited disorders. Twenty-seven percent of positively screened individuals did not have their partner screened. Carriers of a moderate condition had a trend towards a reduced odds for having their partner screened compared to a profound condition (OR 0.36, 95% CI 0.12–1.05, p = 0.06). Number of conditions was not predictive of subsequent partner screening (OR 0.95, 95% CI 0.72–1.25, p = 0.72). In part 2, the cost of ECS was not covered by insurance for 54.5% (103/189) and most paid over $300 out-of-pocket for testing (47.6%). The most common reason for not completing partner testing was that the results would not alter their course when seeking conception (33.3%). 73.5% of patients knew that the largest benefit of ECS comes from knowing a partner's results as well as their own. Conclusions: Not all carriers of recessively inherited disorders choose to undergo partner screening. Patients found to be carrier of more debilitating genetic disorders may be more likely to screen their reproductive partners. For many, ECS testing is not covered by insurance, and this test may impose a significant economic burden. For some patients, the results of ECS would not change what they would do when seeking conception. Providers should evaluate whether a patient's ECS result would change their treatment course prior to testing. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
18. Preconception genome medicine: current state and future perspectives to improve infertility diagnosis and reproductive and health outcomes based on individual genomic data.
- Author
-
Capalbo, Antonio, Poli, Maurizio, Riera-Escamilla, Antoni, Shukla, Vallari, Høffding, Miya Kudo, Krausz, Csilla, Hoffmann, Eva R, Simon, Carlos, and Kudo Høffding, Miya
- Subjects
- *
INFERTILITY , *REPRODUCTIVE health , *EMBRYOLOGY , *DIAGNOSIS , *FERTILIZATION (Biology) , *GENOMICS , *NUCLEOTIDE sequencing , *INFERTILITY treatment , *RESEARCH , *SEQUENCE analysis , *RESEARCH methodology , *EVALUATION research , *COMPARATIVE studies , *LONGITUDINAL method - Abstract
Background: Our genetic code is now readable, writable and hackable. The recent escalation of genome-wide sequencing (GS) applications in population diagnostics will not only enable the assessment of risks of transmitting well-defined monogenic disorders at preconceptional stages (i.e. carrier screening), but also facilitate identification of multifactorial genetic predispositions to sub-lethal pathologies, including those affecting reproductive fitness. Through GS, the acquisition and curation of reproductive-related findings will warrant the expansion of genetic assessment to new areas of genomic prediction of reproductive phenotypes, pharmacogenomics and molecular embryology, further boosting our knowledge and therapeutic tools for treating infertility and improving women's health.Objective and Rationale: In this article, we review current knowledge and potential development of preconception genome analysis aimed at detecting reproductive and individual health risks (recessive genetic disease and medically actionable secondary findings) as well as anticipating specific reproductive outcomes, particularly in the context of IVF. The extension of reproductive genetic risk assessment to the general population and IVF couples will lead to the identification of couples who carry recessive mutations, as well as sub-lethal conditions prior to conception. This approach will provide increased reproductive autonomy to couples, particularly in those cases where preimplantation genetic testing is an available option to avoid the transmission of undesirable conditions. In addition, GS on prospective infertility patients will enable genome-wide association studies specific for infertility phenotypes such as predisposition to premature ovarian failure, increased risk of aneuploidies, complete oocyte immaturity or blastocyst development failure, thus empowering the development of true reproductive precision medicine.Search Methods: Searches of the literature on PubMed Central included combinations of the following MeSH terms: human, genetics, genomics, variants, male, female, fertility, next generation sequencing, genome exome sequencing, expanded carrier screening, secondary findings, pharmacogenomics, controlled ovarian stimulation, preconception, genetics, genome-wide association studies, GWAS.Outcomes: Through PubMed Central queries, we identified a total of 1409 articles. The full list of articles was assessed for date of publication, limiting the search to studies published within the last 15 years (2004 onwards due to escalating research output of next-generation sequencing studies from that date). The remaining articles' titles were assessed for pertinence to the topic, leaving a total of 644 articles. The use of preconception GS has the potential to identify inheritable genetic conditions concealed in the genome of around 4% of couples looking to conceive. Genomic information during reproductive age will also be useful to anticipate late-onset medically actionable conditions with strong genetic background in around 2-4% of all individuals. Genetic variants correlated with differential response to pharmaceutical treatment in IVF, and clear genotype-phenotype associations are found for aberrant sperm types, oocyte maturation, fertilization or pre- and post-implantation embryonic development. All currently known capabilities of GS at the preconception stage are reviewed along with persisting and forthcoming barriers for the implementation of precise reproductive medicine.Wider Implications: The expansion of sequencing analysis to additional monogenic and polygenic traits may enable the development of cost-effective preconception tests capable of identifying underlying genetic causes of infertility, which have been defined as 'unexplained' until now, thus leading to the development of a true personalized genomic medicine framework in reproductive health. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
19. Female and male perspectives on male partner roles in expanded carrier screening.
- Author
-
Jurgensmeyer, Sarah, Walterman, Sarah, Wagner, Andrew, Wong, Kenny, Bao, Annie, Stueber, Sarah, and Spencer, Sara
- Subjects
- *
MALES , *FEMALES , *GENETIC counseling - Abstract
Purpose: To explore facilitators and barriers for male partner follow through carrier screening (CS) after their female partners were identified as carriers, from both male and female perspectives. Methods: Participants were either females identified as a carrier through CS (512 participants) or males who had CS (125 participants). Participants were recruited via e-mails with survey links. The survey explored factors surrounding decisions to pursue CS or not. Results: Males who attended the females' CS appointment were more likely to have CS (OR: 2.07). More male partners of females identified as carriers of severe or profound conditions pursued CS (82.0%) than male partners of females who were carriers for moderate conditions (50.0%). Logistic factors were more impactful for males who pursued CS. Females whose male partners did not test endorsed personal belief factors as most impactful, reporting the perceived low risk (75.0%) and his low concern for the specific condition (65.5%) were the top reasons their partners did not test. Conclusion: Many factors impact how male partners appraise reproductive risk from CS and make decisions regarding their own screening. Advising that male partners attend CS appointments may increase the likelihood of follow through CS. Thorough and repeated risk counseling is indicated. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
20. Legal challenges in reproductive genetics.
- Author
-
Suter, Sonia M
- Subjects
- *
GENETIC testing , *GENETICS , *GENETIC techniques , *PREIMPLANTATION genetic diagnosis , *HUMAN chromosome abnormality diagnosis - Abstract
Recent advancements in reproductive genetics have resulted in the availability of an extraordinary amount of new and detailed information for patients and providers. Whereas this information can inform many who are facing difficult clinical decisions, it can also introduce complex and uncertain choices. Expanded carrier screening and preimplantation genetic diagnosis for aneuploidy are important examples of new genetic techniques that are now widely used in reproductive medicine. This paper will explore these techniques through a medical-legal prism to better understand the opportunities and obligations incumbent on both patients and providers in this new age of genetic diagnosis. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
21. The History and Future Trends of ART Medicine and Law.
- Author
-
Crockin, Susan L., Altman, Amy B., and Edmonds, Meagan A.
- Subjects
- *
HUMAN reproductive technology , *LAW , *DOMESTIC relations , *ESTATE planning , *MEDICAL technology , *REPRODUCTIVE health - Abstract
The Assisted Reproductive Technologies ("ART") have resulted in over eight million births to date, heralding remarkable advances in reproductive medicine with a transformational impact on both medicine and law. The effects have been acutely felt on the modern family, as well as on a myriad of areas of legal practice—including Family Law, Estate Planning, Contract, Health, Constitutional, Criminal, Discrimination, Tort Law and, for international arrangements, Immigration and Citizenship laws. This article examines the historical context, present impact, and future trends of ART and the Law. Its purpose is to help better understand these unique developments in order to help law and policy makers harness and craft the policies and frameworks that will be needed to monitor, shape and guide these remarkable possibilities for participants, professionals, law and society. Practitioner's Key Points: Medical Advances in ART have transformed parentage laws.Third‐party ART introduces unique legal issues and challenges for estate planners and family lawyers.Cryopreserved IVF embryos can trigger Tort, Contract, Family Law, Negligence and Professional Liability Litigation.Dramatic changes in current trends in gamete donation and surrogacy have direct implications for lawyers representing intended parents and ART professionals. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
22. Reprogramming the future: Capitalizing on in vitro embryo culture by advancing stem cell technologies in the fight against rare genetic disorders.
- Author
-
Li L, Zhang T, Hua Z, Wang J, Sun H, Chen Q, Zhou Y, and Wang L
- Abstract
Capitalizing on breakthroughs in reproductive genetics, the utilization of in vitro embryo culture and stem cell technologies heralds a transformative era in addressing global challenges posed by rare genetic diseases. These cutting-edge practices illuminate the intricacies of early human development, elucidate the mechanisms behind rare diseases, and guide the development of potential therapies. Balancing this remarkable innovation with necessary ethical considerations, these technologies have the potential to revolutionize the trajectory of rare genetic disorders, transforming the landscape of diagnosis, treatment, and genetic counseling while offering renewed hope for affected individuals and families worldwide., Competing Interests: This work was supported by four projects of the National Natural Science Foundation of China (grant no. 82374243 to L Wang, grant no. 82304906 to LL Li, grant no. 82060881 to TW Zhang, grant no. 82260950 to YY Zhou).The authors have no conflicts of interest to disclose., (2024, International Research and Cooperation Association for Bio & Socio - Sciences Advancement.)
- Published
- 2024
- Full Text
- View/download PDF
23. Editorial: Emerging New Tests and Their Impact Upon the Practice of Reproductive Genetics.
- Author
-
Leung, Kwok-yin, Borrell, Antoni, Evans, Mark I., and Chen, Ming
- Subjects
GENETIC testing ,MOSAICISM ,CHROMOSOME analysis ,CHORIONIC villus sampling ,MEDICAL genetics ,GENETICS ,MISSENSE mutation - Abstract
Keywords: reproductive genetics; aneuploidy screening; expanded carrier screening; chromosomal microarray analysis; whole-exome sequencing; balanced chromosomal abnormalities; early pregnancy loss; preimplantation genetic testing EN reproductive genetics aneuploidy screening expanded carrier screening chromosomal microarray analysis whole-exome sequencing balanced chromosomal abnormalities early pregnancy loss preimplantation genetic testing 1 3 3 12/22/21 20211217 NES 211217 There has been a geometric explosion in genetic capabilities such that currently a wide variety of prenatal screening and diagnostic testing for fetal chromosomal abnormalities are available. Chromosomal microarray analysis, reproductive genetics, aneuploidy screening, expanded carrier screening, whole-exome sequencing, balanced chromosomal abnormalities, early pregnancy loss, preimplantation genetic testing Next-generation sequencing (NGS) allows identification of sequence variants across many genes and hence screening for multiple genetic conditions at the same time. [Extracted from the article]
- Published
- 2021
- Full Text
- View/download PDF
24. Oocyte maturation arrest produced by TUBB8 mutations: impact of genetic disorders in infertility treatment.
- Author
-
Lanuza-López, María C., Martínez-Garza, Sandra G., Solórzano-Vázquez, Jesús F., Paz-Cervantes, Daniela, González-Ortega, Claudia, Maldonado-Rosas, Israel, Villegas-Moreno, Gerardo, Villar-Muñoz, Lina G., Arroyo-Méndez, Francisco A., Gutiérrez-Gutiérrez, Antonio M., and Piña-Aguilar, Raul E.
- Subjects
- *
OVUM , *GENETIC disorders , *INDUCED ovulation , *INFERTILITY , *HUMAN chromosome abnormality diagnosis , *OOGENESIS , *MOLECULAR diagnosis - Abstract
Oocyte maturation defect is a challenging situation in the management of infertility, the etiology may be related to endocrine causes, protocols used in ovarian stimulation, oocyte intrinsic defects or procedures in embryology laboratory. We report three Mexican females in treatment for primary infertility with non-mature oocytes after ovary stimulation and oocyte capture in whom a genetic diagnosis of TUBB8-oocyte maturation defect was revealed by exome sequencing. Two couples achieved pregnancies though oocyte donation after establishing the genetic etiology. Our results expand the role of TUBB8-disorders in patients of non-Asian ethnicity. Oocyte maturation defects of monogenic origin are a growing group of disorders that endocrinologists and reproductive medicine specialists should be aware in order to provide referral to genetics for establish a correct and opportune diagnosis. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
25. Interest in expanded carrier screening among individuals and couples in the general population: systematic review of the literature.
- Author
-
Steijvoort, Eva Van, Chokoshvili, Davit, Cannon, Jeffrey W, Peeters, Hilde, Peeraer, Karen, Matthijs, Gert, Borry, Pascal, Van Steijvoort, Eva, and W Cannon, Jeffrey
- Subjects
- *
META-analysis , *MEDICAL personnel , *COUNSELING , *PRIMARY care - Abstract
Background: Through carrier screening, prospective parents can acquire information about whether they have an increased risk of conceiving a child affected with an autosomal recessive or X-linked condition. Within the last decade, advances in genomic technologies have facilitated a shift from condition-directed carrier screening to expanded carrier screening (ECS). Following the introduction of ECS, several studies have been performed to gauge the interest in this new technology among individuals and couples in the general population.Objective and Rationale: The aim of this systematic review was to synthesize evidence from empirical studies that assess the interest in ECS among individuals and couples in the general population. As the availability and accessibility of ECS grow, more couples who are a priori not at risk based on their personal or family history will be presented with the choice to accept or decline such an offer. Their attitudes and beliefs, as well as the perceived usefulness of this screening modality, will likely determine whether ECS is to become a widespread reproductive genetic test.Search Methods: Four databases (Pubmed, Web of Science, CINAHL, Cochrane Library) were systematically searched to identify English language studies performed between January 2009 and January 2019 using the following search terms: carrier screening, carrier testing, attitudes, intention, interest, views, opinions, perspectives and uptake. Studies were eligible for inclusion if they reported on intentions to undergo a (hypothetical) ECS test, uptake of an actual ECS offer or both. Two researchers performed a multistep selection process independently for validation purposes.Outcomes: Twelve empirical studies performed between 2015 and 2019 were included for analysis. The studies originated from the USA (n = 6), the Netherlands (n = 3), Belgium (n = 1), Sweden (n = 1) and Australia (n = 1). The sample size of the studies varied from 80 to 1669. In the included studies, 32%-76% of respondents were interested in a (hypothetical) ECS test, while uptake rates for actual ECS offers ranged from 8% to 50%. The highest overall uptake was observed when ECS was offered to pregnant women (50%). By contrast, studies focusing on the preconception population reported lower overall uptake rates (8-34%) with the exception of one study where women were counseled preconception in preparation for IVF (68.7%).Wider Implications: Our findings suggest that there may be discrepancies between prospective parents' reported intentions to undergo ECS and their actual uptake, particularly during the preconception period. As ECS is a new and relatively unknown test for most future parents, the awareness and comprehension within the general population could be rather limited. Adequate pre- and post-test counseling services should be made available to couples offered ECS to ensure informed reproductive decision-making, together with guidelines for primary health care professionals. Due to restricted nature of the samples and methods of the underlying primary studies, some of the reported results might not be transferable to a broader population. More research is needed to see if the observed trends also apply to a broader and more diverse population. [ABSTRACT FROM AUTHOR]- Published
- 2020
- Full Text
- View/download PDF
26. The status of preimplantation genetic testing in the UK and USA.
- Author
-
Theobald, Rachel, SenGupta, Sioban, and Harper, Joyce
- Subjects
- *
GENETIC testing , *HUMAN embryology , *CHILDBIRTH , *REPRODUCTIVE technology , *BIRTH rate , *MATERNAL age , *AMNIOCENTESIS , *FERTILIZATION in vitro , *CROSS-sectional method , *PREIMPLANTATION genetic diagnosis , *HUMAN reproductive technology - Abstract
Study Question: Has the number of preimplantation genetic testing (PGT) cycles in the UK and USA changed between 2014 and 2016?Summary Answer: From 2014 to 2016, the number of PGT cycles in the UK has remained the same at just under 2% but in the USA has increased from 13% to 27%.What Is Known Already: PGT was introduced as a treatment option for couples at risk of transmitting a known genetic or chromosomal abnormality to their child. This technology has also been applied as an embryo selection tool in the hope of increasing live birth rates per transfer. ART cycles are monitored in the UK by the Human Fertilisation and Embryology Authority (HFEA) and in the USA by the Society for Assisted Reproductive Technology (SART). Globally, data are monitored via the ESHRE PGT Consortium.Study Design, Size, Duration: This cross-sectional study used the HFEA and SART databases to analyse PGT cycle data and make comparisons with IVF data to examine the success of and changes in patient treatment pathways. Both data sets were analysed from 2014 to 2016. The UK data included 3385 PGT cycles and the USA data included 94 935 PGT cycles.Participants/materials, Setting, Methods: Following an extensive review of both databases, filters were applied to analyse the data. An assessment of limitations of each database was also undertaken, taking into account data collection by the ESHRE PGT Consortium. In the UK and USA, the publicly available information from these datasets cannot be separated into different indications.Main Results and the Role Of Chance: The proportion of PGT cycles as a total of ART procedures has remained the same in the UK but increased annually in the USA from 13% to 27%. Between 2014 and 2016 inclusive, 3385 PGT cycles have been performed in the UK, resulting in 1074 PGT babies being born. In the USA 94 935 PGT cycles have been performed, resulting in 26 822 babies being born. This gave a success rate per egg collection for PGT of 32% for the UK and 28% for the USA. Analysis of the data by maternal age shows very different patient populations between the UK and USA. These differences may be related to the way PGT is funded in the UK and USA and the lack of HFEA support for PGT for aneuploidy.Limitations, Reasons For Caution: Data reported by the HFEA and SART have different limitations. As undertaken by the ESHRE PGT Consortium, both data sets should separate PGT data by indication. Although the HFEA collects data from all IVF clinics in the UK, SART data only represent 83% of clinics in the USA.Wider Implications Of the Findings: Worldwide, a consistent reporting scheme is required in which success rates can convey the effectiveness of PGT approaches for all indications.Study Funding/competing Interest(s): No specific funding was obtained and there are no competing interests to declare that are directly related to this project. Joyce Harper is the director of the Embryology and PGD Academy, which offers education in these fields. [ABSTRACT FROM AUTHOR]- Published
- 2020
- Full Text
- View/download PDF
27. SYCP2 Translocation-Mediated Dysregulation and Frameshift Variants Cause Human Male Infertility.
- Author
-
Schilit, Samantha L.P., Menon, Shreya, Friedrich, Corinna, Kammin, Tammy, Wilch, Ellen, Hanscom, Carrie, Jiang, Sizun, Kliesch, Sabine, Talkowski, Michael E., Tüttelmann, Frank, MacQueen, Amy J., and Morton, Cynthia C.
- Subjects
- *
CHROMOSOMAL rearrangement , *GAMETES , *MALE infertility , *OLIGOSPERMIA , *CHROMOSOME abnormalities , *INFERTILITY , *EXOMES , *CYTOGENETICS - Abstract
Unexplained infertility affects 2%–3% of reproductive-aged couples. One approach to identifying genes involved in infertility is to study subjects with this clinical phenotype and a de novo balanced chromosomal aberration (BCA). While BCAs may reduce fertility by production of unbalanced gametes, a chromosomal rearrangement may also disrupt or dysregulate genes important in fertility. One such subject, DGAP230, has severe oligozoospermia and 46,XY,t(20;22)(q13.3;q11.2). We identified exclusive overexpression of SYCP2 from the der(20) allele that is hypothesized to result from enhancer adoption. Modeling the dysregulation in budding yeast resulted in disrupted structural integrity of the synaptonemal complex, a common cause of defective spermatogenesis in mammals. Exome sequencing of infertile males revealed three heterozygous SYCP2 frameshift variants in additional subjects with cryptozoospermia and azoospermia. In sum, this investigation illustrates the power of precision cytogenetics for annotation of the infertile genome, suggests that these mechanisms should be considered as an alternative etiology to that of segregation of unbalanced gametes in infertile men harboring a BCA, and provides evidence of SYCP2- mediated male infertility in humans. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
28. "Are we not going too far?": Socio-ethical considerations of preimplantation genetic testing using polygenic risk scores according to healthcare professionals.
- Author
-
Siermann, Maria, Valcke, Ophelia, Vermeesch, Joris Robert, Raivio, Taneli, Tšuiko, Olga, and Borry, Pascal
- Subjects
- *
SOCIOLOGY , *ATTITUDES of medical personnel , *RESEARCH methodology , *DISCRIMINATION (Sociology) , *GENETIC testing , *PREIMPLANTATION genetic diagnosis , *GENETIC disorders , *INTERVIEWING , *SOCIAL stigma , *RISK assessment , *QUALITATIVE research , *MEDICAL ethics , *REPRODUCTIVE health , *DISEASE risk factors - Abstract
The recent introduction of polygenic risk scores within preimplantation genetic testing (PGT-P) has been met with many concerns. To get more insights into the perspectives of relevant stakeholders on the socio-ethical aspects of PGT-P, an interview study with 31 healthcare professionals involved in reproductive medicine and genetics in Europe and North-America was performed. Healthcare professionals in our study were concerned that PGT-P was going too far in terms of selection, with regards to both medical conditions and non-medical traits. Healthcare professionals were worried about the ethical 'slippery slope' of PGT-P, the increasing medicalization of reproductive health, the commercial context of PGT-P, and potential stigmatization and discrimination. There were also concerns that the availability and the 'technological imperative' of PGT-P could lead to pressure and a sense of responsibility for parents to use PGT-P. Additionally, it could cause new anxieties about the child's health before the child has even been born. Since PGT-P provides polygenic risk scores before birth, the autonomy of the child has to be considered. These socio-ethical concerns heighten existing debates regarding reproductive genetic technologies and show that the specifics of PGT-P make this screening option especially ethically controversial. • Introduction of polygenic risk scores in preimplantation genetic testing. • Healthcare professionals concerned about socio-ethical implications. • Associated with 'slippery slope', going too far, discrimination and stigmatization. • Increased sense of medicalization and commercialization of reproduction and health. • Worries about effects on prospective parents and on the future child's autonomy. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
29. Australian stakeholder views regarding the inclusion of genes associated with non-syndromic hearing loss in reproductive genetic carrier screening
- Author
-
Freeman, Lucinda ; https://orcid.org/0000-0002-5814-3894
- Subjects
- Deafness, Reproductive genetics, Population screening, Genetic Counselling, anzsrc-for: 320213 Medical genetics (excl. cancer genetics), anzsrc-for: 3215 Reproductive medicine
- Abstract
The purpose of reproductive genetic carrier screening (RGCS) is to inform prospective parents of their chances of having a child with the conditions being screened so they can consider their reproductive decision making. Genes associated with non-syndromic hearing loss (NSHL) are often included in RGCS panels, which are now routinely offered in preconception and prenatal care in many countries. This is despite a lack of evidence of acceptability by stakeholders. There is considerable debate about whether hearing loss should be considered a medical condition that is appropriate for screening, given the lack of consensus on whether deafness is a disabling condition. Although some couples wish to avoid having a deaf child, there are effective interventions and supports available. This research explores stakeholder views regarding the inclusion of genes associated with NSHL in RGCS. Firstly, a systematic review identified the various attitudes regarding genetic testing for deafness in the reproductive setting and highlighted a lack of data on RGCS and the reproductive option of pre-implantation genetic testing (PGT-M). My research then involved surveying two stakeholder groups on their views on including genes for NSHL in RGCS: (i) Australian healthcare professionals; and (ii) individuals in the general public who participated in RGCS through an Australian government funded pilot study exploring the acceptability of RGCS (called Mackenzie’s Mission). I also interviewed 27 people who are deaf themselves or are parents of a deaf child to explore their views on this topic. There was support across all stakeholder groups for including genes associated with NSHL in RGCS as they viewed inclusion of these genes would uphold prospective parents’ reproductive autonomy and provides information to couples planning pregnancy. However, all stakeholder groups expressed significant concerns about the harms that could come from including these genes in a government-funded population-wide carrier screening program. Results also highlighted the minimal support for using reproductive options to avoid having a child born deaf. These findings underline the complexity of arguments on the inclusion of deafness in RGCS, and how different reproductive options are viewed from different perspectives. For deafness to be included in RGCS, ideally there should be a consensus from stakeholders that the benefits outweigh the harms, and this was not clearly demonstrated in this thesis. What was clearly demonstrated is that there continue to be divided views on whether deafness is a disability. If policy makers consider that inclusion of deafness in a population wide offer of RGCS has utility to society, then they should consider how to do this responsibly, preventing potential harms to the Deaf community and broader society.
- Published
- 2024
30. The effects of an online decision aid to support the reproductive decision‐making process of genetically at risk couples—A pilot study
- Author
-
Yil Severijns, Maartje W. F. Heijmans, Christine E. M. de Die‐Smulders, Emilia K. Bijlsma, Nicole Corsten‐Janssen, Sara J. R. Joosten, Sander M. J. van Kuijk, Klaske D. Lichtenbelt, Cecile P. E. Ottenheim, Kyra E. Stuurman, Gita M. B. Tan‐Sindhunata, Hein de Vries, Liesbeth A. D. M. van Osch, Clinical Genetics, Human genetics, Amsterdam Reproduction & Development (AR&D), Health promotion, RS: GROW - R4 - Reproductive and Perinatal Medicine, Genetica & Celbiologie, MUMC+: DA KG Polikliniek (9), Epidemiologie, MUMC+: KIO Kemta (9), RS: CAPHRI - R2 - Creating Value-Based Health Care, and RS: CAPHRI - R6 - Promoting Health & Personalised Care
- Subjects
HEREDITARY BREAST ,PARTNERS ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,genetic counseling ,INFORMATION ,decision aid ,DIAGNOSIS ,CANCER ,decisional conflict ,OPTIONS ,reproductive genetics ,(joint informed) decision-making ,PREGNANT-WOMEN ,preimplantation genetic testing (PGT) ,Genetics (clinical) - Abstract
Couples at risk of transmitting a genetic disease to their offspring may experience doubts about their reproductive options. This study examines the effects of an online decision aid (DA) on the (joint) reproductive decision-making process of couples (not pregnant at time of inclusion) at risk of transmitting a genetic disease to their offspring. The primary outcome is decisional conflict, and secondary outcomes are knowledge, realistic expectations, deliberation, joint informed decision-making, and decisional self-efficacy. These outcomes were measured with a pretest-posttest design: before use (T0), after use (T1), and 2 weeks after use (T2) of the decision aid (DA). Usability of the DA was assessed at T1. Paired sample t-tests were used to compute differences between baseline and subsequent measurements. The comparisons of T0-T1 and T0-T2 indicate a significant reduction in mean decisional conflict scores with stronger effects for participants with high baseline decisional conflict scores. Furthermore, use of the DA led to increased knowledge, improved realistic expectations, and increased levels of deliberation, with higher increase in participants with low baseline scores. Decision self-efficacy only improved for participants with lower baseline scores. Participants indicated that the information in the DA was comprehensible and clearly organized. These first results indicate that this online DA is an appropriate tool to support couples at risk of transmitting a genetic disease and a desire to have (a) child(ren) in their reproductive decision-making process.
- Published
- 2022
31. Expanded genetic carrier screening in clinical practice: a current survey of patient impressions and attitudes.
- Author
-
Pereira, Nigel, Wood, Michelle, Luong, Emerly, Briggs, Allison, Galloway, Michael, Maxwell, Rose A., and Lindheim, Steven R.
- Subjects
- *
GENETIC carriers , *GENETIC testing , *PATIENTS' attitudes , *PATIENT surveys , *PRECONCEPTION care , *FERTILITY preservation - Abstract
Purpose: Expanded genetic carrier screening (ECS) is an important part of gynecological practice and preconception planning. We evaluated the awareness and attitudes among women regarding ECS and factors that may influence decision-making in a family planning context. Methods: A 32-question survey in an academic university practice was given to 521 women who were either currently pregnant (n = 108), undergoing gynecologic care who were considering future fertility (n = 308), and considering or receiving fertility treatment (n = 105). Data are reported descriptively. Results: Forty-seven percent (n = 246) of patients were aware of ECS. Though most reported feeling positive or neutral towards ECS, 51% (n = 263) reported no desire for testing. Fifty-eight percent (n = 303) felt it beneficial to know their carrier status, and 55% (n = 257) said it was their responsibility to undergo testing. Those considering future fertility were found to have a more positive attitude towards ECS (51.4%) than those considering or receiving fertility treatment (34%). For positive carriers of a genetic disorder, 228 (49%) of patients would proceed with having their partner screened, 58 (13%) would undergo prenatal screening only and 12 (2.6%) would continue with vitro fertilization (IVF). Related to cost for ECS, 53.5% (n = 191) would be willing to pay at least $50–100 for testing, while 29% (n = 146) would not pay anything out of pocket. Conclusions: Despite patients' beliefs that it would be beneficial and their responsibility to undergo carrier status testing, the majority reported no desire for ECS and many were unwilling to pay out of pocket. Further education is necessary to reconcile the gap between technology and patient decision-making. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
32. The model of "genetic compartments": a new insight into reproductive genetics.
- Author
-
Vendrell, X. and Escribà, M. J.
- Subjects
- *
GENETICS , *GENETIC translation , *GENETIC counseling , *GENITALIA , *HUMAN body , *SOMATIC mutation - Abstract
Currently, we are witnessing revolutionary advances in the analytical power of genetic tools. An enormous quantity of data can now be obtained from samples; however, the translation of genetic findings to the general status of individuals, or their offspring, should be done with caution. This is especially relevant in the reproductive context, where the concepts of "transmission" and "inheritability" of a trait are crucial. Against this background, we offer new insight based on a systemic view of genetic constitution in the compartmentalized organism, that is, the human body. This model considers the coexistence of "different" genomes in the same individual and the repercussion of this on reproductive efficacy and offspring. Herein, we review the major differences between somatic, germinal, embryonic, and fetal/placental genomes and their contribution to the next generation and its reproductive efficacy. The major novelty of our approach is the holistic interaction between microsystems within a macrosystem (i.e., the reproductive system). This panoramic model allows us to sketch the future implications of genetic results in function of the origin (compartment) of the sample: peripheral blood or other somatic tissues, gametes, zygotes, preimplantation embryos, fetus, or placenta. We believe this perspective can be of great use in the context of reproductive genetic counseling. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
33. Machine learning based prediction models in male reproductive health: Development of a proof‐of‐concept model for Klinefelter Syndrome in azoospermic patients
- Author
-
Henrike Krenz, Andrea Sansone, Michael Fujarski, Claudia Krallmann, Michael Zitzmann, Martin Dugas, Sabine Kliesch, Julian Varghese, Frank Tüttelmann, and Jörg Gromoll
- Subjects
Male ,azoospermia ,Urology ,Endocrinology, Diabetes and Metabolism ,prediction models ,Klinefelter Syndrome ,machine learning ,Settore MED/13 ,Endocrinology ,Reproductive Medicine ,reproductive genetics ,Humans ,reproductive health ,Retrospective Studies - Abstract
Due to the highly variable clinical phenotype, Klinefelter Syndrome is underdiagnosed.Assessment of supervised machine learning based prediction models for identification of Klinefelter Syndrome among azoospermic patients, and comparison to expert clinical evaluation.Retrospective patient data (karyotype, age, height, weight, testis volume, follicle-stimulating hormone, luteinizing hormone, testosterone, estradiol, prolactin, semen pH and semen volume) collected between January 2005 and June 2019 were retrieved from a patient data bank of a University Centre. Models were trained, validated and benchmarked based on different supervised machine learning algorithms. Models were then tested on an independent, prospectively acquired set of patient data (between July 2019 and July 2020). Benchmarking against physicians was performed in addition.Based on average performance, support vector machines and CatBoost were particularly well-suited models, with 100% sensitivity and93% specificity on the test dataset. Compared to a group of 18 expert clinicians, the machine learning models had significantly better median sensitivity (100% vs. 87.5%, p = 0.0455) and fared comparably with regards to specificity (90% vs. 89.9%, p = 0.4795), thereby possibly improving diagnosis rate. A Klinefelter Syndrome Score Calculator based on the prediction models is available on http://klinefelter-score-calculator.uni-muenster.de.Differentiating Klinefelter Syndrome patients from azoospermic patients with normal karyotype (46,XY) is a problem that can be solved with supervised machine learning techniques, improving patient care.Machine learning could improve the diagnostic rate of Klinefelter Syndrome among azoospermic patients, even more for less-experienced physicians.
- Published
- 2022
34. Genes Are Not the Whole Story: Retrotransposons as New Determinants of Male Fertility
- Author
-
Déborah Bourc'his and Patricia Fauque
- Subjects
Genetics ,medicine.medical_specialty ,Reproductive medicine ,medicine ,Epigenetics ,Biology ,Gene ,Reproductive genetics - Published
- 2023
35. A systematic review and evidence assessment of monogenic gene-disease relationships in human female infertility and differences in sex development
- Author
-
Annelore Van Der Kelen, Özlem Okutman, Elodie Javey, Münevver Serdarogullari, Charlotte Janssens, Manjusha S Ghosh, Bart J H Dequeker, Florence Perold, Claire Kastner, Emmanuelle Kieffer, Ingrid Segers, Alexander Gheldof, Frederik J Hes, Karen Sermon, Willem Verpoest, Stéphane Viville, Clinical sciences, Centre for Medical Genetics, Brussels Heritage Lab, Medical Genetics, Faculty of Medicine and Pharmacy, Basic (bio-) Medical Sciences, UZB Other, Reproduction and Genetics, and Centre for Reproductive Medicine - Gynaecology
- Subjects
systematic review ,Reproductive Medicine ,female infertility ,reproductive genetics ,medically assisted reproduction ,monogenic ,Obstetrics and Gynecology ,Genetics(clinical) ,gene–disease relationship ,clinical validation ,Art ,differences in sex development - Abstract
BACKGROUND As in other domains of medicine, high-throughput sequencing methods have led to the identification of an ever-increasing number of gene variants in the fields of both male and female infertility. The increasing number of recently identified genes allows an accurate diagnosis for previously idiopathic cases of female infertility and more appropriate patient care. However, robust evidence of the gene–disease relationships (GDR) allowing the proper translation to clinical application is still missing in many cases. OBJECTIVE AND RATIONALE An evidence-based curation of currently identified genes involved in female infertility and differences in sex development (DSD) would significantly improve both diagnostic performance and genetic research. We therefore performed a systematic review to summarize current knowledge and assess the available GDR. SEARCH METHODS PRISMA guidelines were applied to curate all available information from PubMed and Web of Science on genetics of human female infertility and DSD leading to infertility, from 1 January 1988 to 1 November 2021. The reviewed pathologies include non-syndromic as well as syndromic female infertility, and endocrine and reproductive system disorders. The evidence that an identified phenotype is caused by pathogenic variants in a specific gene was assessed according to a standardized scoring system. A final score (no evidence, limited, moderate, strong, or definitive) was assigned to every GDR. OUTCOMES A total of 45 271 publications were identified and screened for inclusion of which 1078 were selected for gene and variant extraction. We have identified 395 genes and validated 466 GDRs covering all reported monogenic causes of female infertility and DSD. Furthermore, we present a genetic diagnostic flowchart including 105 genes with at least moderate evidence for female infertility and suggest recommendations for future research. The study did not take into account associated genetic risk factor(s) or oligogenic/polygenic causes of female infertility. WIDER IMPLICATIONS We have comprehensively reviewed the existing research on the genetics of female infertility and DSD, which will enable the development of diagnostic panels using validated genes. Whole genome analysis is shifting from predominantly research to clinical application, increasing its diagnostic potential. These new diagnostic possibilities will not only decrease the number of idiopathic cases but will also render genetic counselling more effective for infertile patients and their families.
- Published
- 2022
36. Expanded carrier screening: a current survey of physician utilization and attitudes.
- Author
-
Briggs, Allison, Nouri, Parvaneh K., Galloway, Michael, O’Leary, Kathleen, Pereira, Nigel, and Lindheim, Steven R.
- Subjects
- *
PRENATAL care , *PRECONCEPTION care , *ENDOCRINOLOGY of human reproduction , *INFERTILITY , *FOLLOW-up studies (Medicine) - Abstract
Purpose: Expanded carrier screening (ECS) is an available component of preconception and prenatal care. There is complexity around offering, administering, and following-up test results. The goal of this study is to evaluate current physicians’ utilization and attitudes towards ECS in current practice.Methods: This was a prospective qualitative survey study. A 32-question electronic survey was distributed during a 1-year period to obstetricians-gynecologists who were identified using a Qualtrics listserv database.Results: While more than 90% of physicians offered ethnic-based carrier screening (CS), ECS was offered significantly less (2010, 20.6%, and 2016, 27.1%). Physicians who were not fellowship-trained in reproductive endocrinology and infertility (REI) preferred ethnic-based carrier screening (95.9 vs 16.8%; P < 0.001). REI subspecialists were more likely to offer ECS (80%) compared to 70% of maternal fetal medicine physicians (MFM). Physicians were comfortable discussing negative results (53.6%) compared to positive results (48.4%). Most physicians (56%) believed that ECS should not be offered until the significance of each disease is understood; 52% believed that testing should be restricted to those conditions important to couples; while 26% felt that testing should be done regardless of the clinical significance.Conclusions: Discussion and application of ECS has increased in clinical practice. However, lack of comfort with counseling and varying beliefs surrounding ECS continue to hinder its utilization. Further education and training programs, and subsequent evaluation are warranted. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
37. Preimplantation genetic testing is not a preferred recommendation for patients with X chromosome abnormalities
- Author
-
Yueting Zhu, Yingying Qin, Hongchang Li, Chenxi Li, Jing Li, and Yujie Dang
- Subjects
Abortion, Habitual ,medicine.medical_specialty ,X Chromosome ,Pregnancy Rate ,pregnancy outcomes ,Aneuploidy ,Fertilization in Vitro ,X chromosome abnormalities ,Miscarriage ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,Turner syndrome ,Recurrent miscarriage ,medicine ,Humans ,Genetic Testing ,Retrospective Studies ,Gynecology ,030219 obstetrics & reproductive medicine ,business.industry ,IVF/ICSI ,Rehabilitation ,Obstetrics and Gynecology ,Original Articles ,Reproductive Genetics ,medicine.disease ,AcademicSubjects/MED00905 ,Embryo transfer ,Reproductive Medicine ,030220 oncology & carcinogenesis ,Chromosome abnormality ,Female ,Klinefelter syndrome ,preimplantation genetic testing ,business ,Infertility, Female ,Live Birth - Abstract
STUDY QUESTION Should women with X chromosome abnormalities (XCAs) be recommended to have embryos selected by both morphological and cytogenetic assessment through preimplantation genetic testing (PGT) rather than morphological assessment only in conventional IVF/ICSI treatment? SUMMARY ANSWER PGT is not a preferred recommendation for women with XCAs in the absence of other PGT indications. WHAT IS KNOWN ALREADY XCAs are the most frequent sort of chromosomal aberrations in infertile women. Patients with a complete or partial absence of one X chromosome, diagnosed as Turner Syndrome (TS), demonstrate low spontaneous pregnancy rates (5–7%) and high miscarriage rates (22.8–30.8%), as well as high chances of birth defects (20%). PGT is known to improve pregnancy rates and decrease the incidence of miscarriage in couples with chromosomal aberrations such as Robertsonian and reciprocal translocations and Klinefelter Syndrome. STUDY DESIGN, SIZE, DURATION A retrospective cohort study was conducted with 394 women with XCAs and undergoing their first oocyte retrieval and first embryo transfer cycle from June 2011 to August 2019 in the Reproductive Hospital Affiliated to Shandong University. PARTICIPANTS/MATERIALS, SETTING, METHODS Pregnancy outcomes were compared between the conventional IVF/ICSI group (n = 284) and the PGT group (n = 110) in the first fresh or frozen embryo transfer cycle for each woman with XCAs. Three platforms were applied in PGT: fluorescence in situ hybridisation (FISH, n = 34), array comparative genomic hybridisation (aCGH, n = 24) and next-generation sequencing (NGS, n = 51). The embryo aneuploidy rate and distribution of embryonic chromosomal aberrations revealed by aCGH or NGS were analysed and stratified by maternal age and type of XCAs to assess the effect of maternal XCAs on embryo karyotypes. MAIN RESULT AND THE ROLE OF CHANCE The live birth rate (LBR) per embryo transfer was similar between the PGT group and IVF/ICSI group both in the first cycle of fresh or frozen embryo transfer respectively (39.13% in PGTFISH vs 42.58% in IVF/ICSI, Padj=0.558; 66.67% in PGTFISH vs 52.08% in PGTaCGH/NGS vs 53.06% in IVF/ICSI, Padj=0.756), as was the clinical pregnancy rate (60.87% in PGTFISH vs 50.97% in IVF/ICSI, Padj =0.672; 88.89% in PGTFISH vs 58.33% in PGTaCGH/NGS vs 69.39% in IVF/ICSI, Padj =0.480) and the pregnancy loss rate (35.71% in PGTFISH vs 16.46% in IVF/ICSI, Padj =0.136; 12.50% in PGTFISH vs 10.71% in PGTaCGH/NGS vs 23.53% in IVF/ICSI, Padj =0.352). The rates of maternal and neonatal complications were also comparable between the PGT and IVF/ICSI groups with fresh and frozen transfers respectively (10.00% vs 8.85%, P = 1.000; 21.74% vs 14.55%, P = 0.272). Intriguingly, the distribution of embryonic chromosome abnormalities was more frequent on autosomes 22 (20.39%), 21 (18.45%) and 16 (17.47%), compared with the X chromosome (8.73%). LIMITATIONS, REASONS FOR CAUTION Selection bias is an inherent drawback of a retrospective study. First, our participants hosted 4.84% X chromosome mosaicism with few typical somatic anomalies of TS. Second, the incidences of history of recurrent miscarriage and abnormal offspring in the PGT group were higher than in IVF/ICSI group although binary logistic regression analysis was performed to attenuate the modifying effect of confounding factors. Third, FISH performed in this study only used X/Y probes and lacked the reference of autosome, which might have resulted in misdiagnosis and bias. Finally, intrinsic disadvantages could not be totally avoided due to the retrospective nature of this study. WIDER IMPLICATION OF THE FINDINGS In the current study, comparable pregnancy outcomes were revealed among a large cohort of women with XCAs undergoing their first cycles of PGT or conventional IVF/ICSI treatment. Moreover, the X chromosome abnormality was illustrated to cause no higher frequency of aberrations in embryos. Our data provided perspectives for genetic and reproductive counselling to XCAs individuals and their families. STUDY FUNDING/COMPETING INTEREST(S) This work was supported by National Research and Development Plan (2016YFC1000604 and 2017YFC1001100), the National Natural Science Foundation of China (81701406), Shandong Science Fund for Distinguished Young Scholars (JQ201720), Taishan Scholars Program for Young Experts of Shandong Province (tsqn20161069) and Projects of Medical and Health Technology Development Program in Shandong Province (202005010520, 202005010523 and 2016WS0368). There is no conflict of interest to declare. TRIAL REGISTRATION NUMBER N/A.
- Published
- 2021
38. Association of medically assisted reproduction with offspring cord blood DNA methylation across cohorts
- Author
-
James Jungius, Caroline L Relton, Boris Novakovic, Jane Halliday, Christian M. Page, Maria C. Magnus, Hannah R Elliott, Richard Saffery, Doretta Caramaschi, Siri E. Håberg, Stephanie J. London, Debbie A Lawlor, and Sharon Lewis
- Subjects
0301 basic medicine ,Longitudinal study ,medicine.medical_treatment ,HIV Infections ,Reproductive technology ,Cohort Studies ,0302 clinical medicine ,assisted reproductive technology ,Medicine ,Longitudinal Studies ,MoBa ,Child ,media_common ,030219 obstetrics & reproductive medicine ,DNA methylation ,Reproduction ,Rehabilitation ,Obstetrics and Gynecology ,ALSPAC ,Fetal Blood ,Biobank ,IVF ,Cohort ,Female ,Bristol Population Health Science Institute ,Cohort study ,medically assisted reproduction ,Adult ,medicine.medical_specialty ,03 medical and health sciences ,CHART ,media_common.cataloged_instance ,Humans ,European union ,Assisted reproductive technology ,epigenetics ,business.industry ,Australia ,Infant, Newborn ,Infant ,Original Articles ,Reproductive Genetics ,AcademicSubjects/MED00905 ,030104 developmental biology ,Reproductive Medicine ,Family medicine ,Case-Control Studies ,business - Abstract
STUDY QUESTION Is cord blood DNA methylation associated with having been conceived by medically assisted reproduction? SUMMARY ANSWER This study does not provide strong evidence of an association of conception by medically assisted reproduction with variation in infant blood cell DNA methylation. WHAT IS KNOWN ALREADY Medically assisted reproduction consists of procedures used to help infertile/subfertile couples conceive, including ART. Due to its importance in gene regulation during early development programming, DNA methylation and its perturbations associated with medically assisted reproduction could reveal new insights into the biological effects of assisted reproductive technologies and potential adverse offspring outcomes. STUDY DESIGN, SIZE, DURATION We investigated the association of DNA methylation and medically assisted reproduction using a case–control study design (N = 205 medically assisted reproduction cases and N = 2439 naturally conceived controls in discovery cohorts; N = 149 ART cases and N = 58 non-ART controls in replication cohort). PARTICIPANTS/MATERIALS, SETTINGS, METHODS We assessed the association between medically assisted reproduction and DNA methylation at birth in cord blood (205 medically assisted conceptions and 2439 naturally conceived controls) at >450 000 CpG sites across the genome in two sub-samples of the UK Avon Longitudinal Study of Parents and Children (ALSPAC) and two sub-samples of the Norwegian Mother, Father and Child Cohort Study (MoBa) by meta-analysis. We explored replication of findings in the Australian Clinical review of the Health of adults conceived following Assisted Reproductive Technologies (CHART) study (N = 149 ART conceptions and N = 58 controls). MAIN RESULTS AND THE ROLE OF CHANCE The ALSPAC and MoBa meta-analysis revealed evidence of association between conception by medically assisted reproduction and DNA methylation (false-discovery-rate-corrected P-value < 0.05) at five CpG sites which are annotated to two genes (percentage difference in methylation per CpG, cg24051276: Beta = 0.23 (95% CI 0.15,0.31); cg00012522: Beta = 0.47 (95% CI 0.31, 0.63); cg17855264: Beta = 0.31 (95% CI 0.20, 0.43); cg17132421: Beta = 0.30 (95% CI 0.18, 0.42); cg18529845: Beta = 0.41 (95% CI 0.25, 0.57)). Methylation at three of these sites has been previously linked to cancer, aging, HIV infection and neurological diseases. None of these associations replicated in the CHART cohort. There was evidence of a functional role of medically assisted reproduction-induced hypermethylation at CpG sites located within regulatory regions as shown by putative transcription factor binding and chromatin remodelling. LIMITATIONS, REASONS FOR CAUTIONS While insufficient power is likely, heterogeneity in types of medically assisted reproduction procedures and between populations may also contribute. Larger studies might identify replicable variation in DNA methylation at birth due to medically assisted reproduction. WIDER IMPLICATIONS OF THE FINDINGS Newborns conceived with medically assisted procedures present with divergent DNA methylation in cord blood white cells. If these associations are true and causal, they might have long-term consequences for offspring health. STUDY FUNDING/COMPETING INTERESTS(S) This study has been supported by the US National Institute of Health (R01 DK10324), the European Research Council under the European Union’s Seventh Framework Programme (FP7/2007-2013)/ERC Grant agreement no. 669545, European Union’s Horizon 2020 research and innovation programme under Grant agreement no. 733206 (LifeCycle) and the NIHR Biomedical Centre at the University Hospitals Bristol NHS Foundation Trust and the University of Bristol. The UK Medical Research Council and Wellcome (Grant ref: 102215/2/13/2) and the University of Bristol provide core support for ALSPAC. Methylation data in the ALSPAC cohort were generated as part of the UK BBSRC funded (BB/I025751/1 and BB/I025263/1) Accessible Resource for Integrated Epigenomic Studies (ARIES, http://www.ariesepigenomics.org.uk). D.C., J.J., C.L.R. D.A.L and H.R.E. work in a Unit that is supported by the University of Bristol and the UK Medical Research Council (Grant nos. MC_UU_00011/1, MC_UU_00011/5 and MC_UU_00011/6). B.N. is supported by an NHMRC (Australia) Investigator Grant (1173314). ALSPAC GWAS data were generated by Sample Logistics and Genotyping Facilities at Wellcome Sanger Institute and LabCorp (Laboratory Corporation of America) using support from 23andMe. The Norwegian Mother, Father and Child Cohort Study is supported by the Norwegian Ministry of Health and Care Services and the Ministry of Education and Research, NIH/NIEHS (Contract no. N01-ES-75558), NIH/NINDS (Grant nos. (i) UO1 NS 047537-01 and (ii) UO1 NS 047537-06A1). For this work, MoBa 1 and 2 were supported by the Intramural Research Program of the NIH, National Institute of Environmental Health Sciences (Z01-ES-49019) and the Norwegian Research Council/BIOBANK (Grant no. 221097). This work was partly supported by the Research Council of Norway through its Centres of Excellence funding scheme, Project no. 262700. D.A.L. has received support from national and international government and charity funders, as well as from Roche Diagnostics and Medtronic for research unrelated to this study. The other authors declare no conflicts of interest. TRIAL REGISTRATION NUMBER N/A.
- Published
- 2021
39. Asian Pacific Journal of Reproduction
- Subjects
reproductive sciences ,gynecologic and reproductive oncology ,embryology ,reproductive endocrinology ,reproductive immunology ,reproductive genetics ,Medicine - Published
- 2017
40. The use of expanded carrier screening of gamete donors
- Author
-
Molly R Payne, Joyce C. Harper, and Anne-Bine Skytte
- Subjects
Male ,medicine.medical_specialty ,Sperm donation ,egg donation ,medicine.medical_treatment ,expanded carrier screening ,Disease ,film.subject ,genetic testing ,03 medical and health sciences ,Egg donation ,0302 clinical medicine ,Medicine ,Humans ,Trial registration ,donor ,Genetic testing ,0303 health sciences ,030219 obstetrics & reproductive medicine ,Assisted reproductive technology ,medicine.diagnostic_test ,business.industry ,Research ,030305 genetics & heredity ,Rehabilitation ,Obstetrics and Gynecology ,Original Articles ,Reproductive Genetics ,sperm donation ,AcademicSubjects/MED00905 ,Spermatozoa ,Tissue Donors ,Germ Cells ,Reproductive Medicine ,film ,Family medicine ,Carrier status ,Female ,business ,Carrier screening - Abstract
STUDY QUESTION What are the sperm and egg donor rejection rates after expanded carrier screening (ECS)? SUMMARY ANSWER Using an ECS panel looking at 46/47 genes, 17.6% of donors were rejected. WHAT IS KNOWN ALREADY The use of ECS is becoming commonplace in assisted reproductive technology, including testing of egg and sperm donors. Most national guidelines recommend rejection of donors if they are carriers of a genetic disease. If the use of ECS increases, there will be a decline in the number of donors available. STUDY DESIGN, SIZE, DURATION A review of the current preconception ECS panels available to donors was carried out through an online search. The genetic testing results of donors from Cryos International were analysed to determine how many were rejected on the basis of the ECS. PARTICIPANTS/MATERIALS, SETTING, METHODS Data on gamete donors and their carrier status was provided by Cryos International, who screen donors using their own bespoke ECS panel. The ECS panels identified through the review were compared to the Cryos International panel and data. MAIN RESULTS AND THE ROLE OF CHANCE A total of 16 companies and 42 associated ECS panels were reviewed. There were a total of 2673 unique disorders covered by the panels examined, with a mean of 329 disorders screened. None of these disorders were common to all panels. Cryos International screen 46 disorders in males and 47 in females. From 883 candidate donors, 17.6% (155/883) were rejected based on their ECS result. Carriers of alpha-thalassaemia represented the largest proportion of those rejected (19.4%, 30/155), then spinal muscular atrophy (15.5%, 24/155) and cystic fibrosis (14.8%, 23/155). LIMITATIONS, REASONS FOR CAUTION Panel information was found on company websites and may not have been accurate. WIDER IMPLICATIONS OF THE FINDINGS This study highlights the need for consistent EU regulations and guidelines that allow genetic matching of gamete donors to their recipients, preventing the need to reject donors who are known carriers. A larger ECS panel would be most beneficial; however, this would not be viable without matching of donors and recipients. STUDY FUNDING/COMPETING INTEREST(S) No specific funding was obtained. J.C.H. is the founder of Global Women Connected, a platform to discuss women’s health issues and the Embryology and PGD Academy, who deliver education in clinical embryology. She has been paid to give a lecture by Cryos in 2019. A-B.S. is an employee of Cryos International. TRIAL REGISTRATION NUMBER N/A
- Published
- 2021
41. Female and male perspectives on male partner roles in expanded carrier screening
- Author
-
Annie Bao, Sarah Walterman, Sarah Jurgensmeyer, Sara Spencer, Kenny K. Wong, Sarah Stueber, and Andrew Wagner
- Subjects
Adult ,Male ,Heterozygote ,medicine.medical_specialty ,Genetic counseling ,Reproductive medicine ,Genetic Counseling ,Reproductive risk ,Surveys and Questionnaires ,Personal belief ,Genetics ,medicine ,Humans ,Genetic Testing ,Genetics (clinical) ,business.industry ,Genetic Carrier Screening ,Reproduction ,Obstetrics and Gynecology ,General Medicine ,Reproductive genetics ,Test (assessment) ,Reproductive Medicine ,Female ,Carrier screening ,business ,Developmental Biology ,Demography - Abstract
PURPOSE: To explore facilitators and barriers for male partner follow through carrier screening (CS) after their female partners were identified as carriers, from both male and female perspectives. METHODS: Participants were either females identified as a carrier through CS (512 participants) or males who had CS (125 participants). Participants were recruited via e-mails with survey links. The survey explored factors surrounding decisions to pursue CS or not. RESULTS: Males who attended the females’ CS appointment were more likely to have CS (OR: 2.07). More male partners of females identified as carriers of severe or profound conditions pursued CS (82.0%) than male partners of females who were carriers for moderate conditions (50.0%). Logistic factors were more impactful for males who pursued CS. Females whose male partners did not test endorsed personal belief factors as most impactful, reporting the perceived low risk (75.0%) and his low concern for the specific condition (65.5%) were the top reasons their partners did not test. CONCLUSION: Many factors impact how male partners appraise reproductive risk from CS and make decisions regarding their own screening. Advising that male partners attend CS appointments may increase the likelihood of follow through CS. Thorough and repeated risk counseling is indicated. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10815-020-02029-5.
- Published
- 2021
42. DNA methylation differences at birth after conception through ART
- Author
-
Ellika Andolf, Anna Hedman, Anastasia Iliadou, Göran Pershagen, Catarina Almqvist, Jan I. Olofsson, Margaretha Wramsby, Elmar W. Tobi, Håkan Wramsby, Bastiaan T. Heijmans, Jan Holte, and Obstetrics & Gynecology
- Subjects
0301 basic medicine ,0302 clinical medicine ,Pregnancy ,Medicine ,reproductive and urinary physiology ,media_common ,Netherlands ,DNA methylation ,Obstetrics ,Rehabilitation ,Obstetrics and Gynecology ,epigenome-wide association study ,CpG site ,IVF ,030220 oncology & carcinogenesis ,Cord blood ,Cohort ,embryonic structures ,cord blood ,Female ,Medical Genetics ,ART ,Adult ,medicine.medical_specialty ,media_common.quotation_subject ,Reproduktionsmedicin och gynekologi ,Fertility ,Fertilization in Vitro ,ICSI ,03 medical and health sciences ,Group differences ,Obstetrics, Gynecology and Reproductive Medicine ,Humans ,Epigenetics ,Sperm Injections, Intracytoplasmic ,Medicinsk genetik ,Sweden ,epigenetics ,business.industry ,Infant, Newborn ,dNaM ,Infant ,Original Articles ,Reproductive Genetics ,AcademicSubjects/MED00905 ,030104 developmental biology ,Cross-Sectional Studies ,Reproductive Medicine ,Obstetrics, Gynaecology and Reproductive Medicine ,business - Abstract
STUDY QUESTION Is there a relation between ART and DNA methylation (DNAm) patterns in cord blood, including any differences between IVF and ICSI? SUMMARY ANSWER DNAm at 19 CpGs was associated with conception via ART, with no difference found between IVF and ICSI. WHAT IS KNOWN ALREADY Prior studies on either IVF or ICSI show conflicting outcomes, as both widespread effects on DNAm and highly localized associations have been reported. No study on both IVF and ICSI and genome-wide neonatal DNAm has been performed. STUDY DESIGN, SIZE, DURATION This was a cross-sectional study comprising 87 infants conceived with IVF or ICSI and 70 conceived following medically unassisted conception. The requirement for inclusion in the study was an understanding of the Swedish language and exclusion was the use of donor gametes. PARTICIPANTS/MATERIALS, SETTING, METHODS Participants were from the UppstART study, which was recruited from fertility and reproductive health clinics, and the Born into Life cohort, which is recruited from the larger LifeGene study. We measured DNAm from DNA extracted from cord blood collected at birth using a micro-array (450k array). Group differences in DNAm at individual CpG dinucleotides (CpGs) were determined using robust linear models and post-hoc Tukey’s tests. MAIN RESULTS AND THE ROLE OF CHANCE We found no association of ART conception with global methylation levels, imprinted loci and meta-stable epialleles. In contrast, we identify 19 CpGs at which DNAm was associated with being conceived via ART (effect estimates: 0.5–4.9%, PFDR < 0.05), but no difference was found between IVF and ICSI. The associated CpGs map to genes related to brain function/development or genes connected to the plethora of conditions linked to subfertility, but functional annotation did not point to any likely functional consequences. LIMITATIONS, REASONS FOR CAUTION We measured DNAm in cord blood and not at later ages or in other tissues. Given the number of tests performed, our study power is limited and the findings need to be replicated in an independent study. WIDER IMPLICATIONS OF THE FINDINGS We find that ART is associated with DNAm differences in cord blood when compared to non-ART samples, but these differences are limited in number and effect size and have unknown functional consequences in adult blood. We did not find indications of differences between IVF and ICSI. STUDY FUNDING/COMPETING INTEREST(S) E.W.T. was supported by a VENI grant from the Netherlands Organization for Scientific Research (91617128) and JPI-H2020 Joint Programming Initiative a Healthy Diet for a Healthy Life (JPI HDHL) under proposal number 655 (PREcisE Project) through ZonMw (529051023). Financial support was provided from the European Union’s Seventh Framework Program IDEAL (259679), the Swedish Research Council (K2011-69X-21871-01-6, 2011-3060, 2015-02434 and 2018-02640) and the Strategic Research Program in Epidemiology Young Scholar Awards, Karolinska Institute (to A.N.I.) and through the Swedish Initiative for Research on Microdata in the Social And Medical Sciences (SIMSAM) framework grant no 340-2013-5867, grants provided by the Stockholm County Council (ALF-projects), the Strategic Research Program in Epidemiology at Karolinska Institutet and the Swedish Heart-Lung Foundation and Danderyd University Hospital (Stockholm, Sweden). The funders had no role in study design, data collection, analysis, decision to publish or preparation of the manuscript. The authors declare no competing interests. TRIAL REGISTRATION NUMBER N/A.
- Published
- 2021
43. The History and Future Trends of <scp>ART</scp> Medicine and Law
- Author
-
Amy B. Altman, Meagan A. Edmonds, and Susan L. Crockin
- Subjects
Assisted reproductive technology ,Gamete donation ,medicine.medical_treatment ,Reproductive rights ,medicine ,Environmental ethics ,Posthumous Reproduction ,Fertility preservation ,Biology ,Law ,Reproductive genetics - Published
- 2021
44. Precision reproductive medicine: multigene panel testing for infertility risk assessment.
- Author
-
Collins, Stephen
- Subjects
- *
REPRODUCTIVE health , *INDIVIDUALIZED medicine , *GENETIC testing , *MEDICAL genetics ,RISK factors in infertility - Abstract
The concept of precision medicine relies on a thorough understanding of the consequences of unique features of individual patients, such as environmental exposures and genetic profiles. A key component of implementing individualized care in this paradigm will be improved assessment of genetic risk. Compared with single gene tests, multigene panel testing-which has recently become commercially available for female infertility-offers the possibility of a more comprehensive and efficient risk evaluation. However, as the use of multigene panel testing for breast cancer risk has shown, this approach must be used judiciously to ensure its usefulness in a clinical setting. Key challenges which have been encountered in oncology include the interpretation of gene variants of questionable clinical effect and a lack of evidence to guide management after variants are identified. In this review, the core concepts of multigene panel testing for risk assessment are discussed, with careful attention to both its shortcomings as well as its potential for benefit in reproductive medicine. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
45. A Pilot Study of Fragile X Syndrome Screening in Pregnant Women and Women Planning Pregnancy: Implementation, Acceptance, Awareness, and Geographic Factors.
- Author
-
Alfaro Arenas, Ramona, Rosell Andreo, Jordi, and Heine Suñer, Damián
- Abstract
We report herein results of a study performed in the Balearic Islands which had the following goals: 1) Determine the proportion of pregnant or non-pregnant women planning pregnancy, who would choose to undergo a screening test for Fragile X Syndrome (FXS), if it is accompanied by the appropriate information; 2) Assess satisfaction and any increase in stress among women who participate in screening; 3) Collect epidemiological information about the incidence of the disease in our population; and 4) Collect demographic and health history data and assess participants' awareness of the disease. Screening was performed on 3,731 pregnant and non-pregnant women of childbearing age and the results indicate: a very high voluntary rate of participation; a high level of self-reported satisfaction and low levels of stress because of the test; a very high incidence of premutation (1/106) in our population; and a low level of awareness about the existence of FXS (25 %). Additional findings indicate no significant correlation between self-reported health history and premutation detection, and the high premutation incidence does not seem to be specific to the indigenous Balearic population. Based on these results, we discuss the pros and cons of an implementation of preconception and pregnant women screening for FXS within a public health screening program. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
46. Pathogenic variant in NLRP7 (19q13.42) associated with recurrent gestational trophoblastic disease: Data from early embryo development observed during in vitro fertilization.
- Author
-
Sills, E. Scott, Obregon-Tito, Alexandra J., Gao, Harry, McWilliams, Thomas K., Gordon, Anthony T., Adams, Catharine A., and Slim, Rima
- Subjects
- *
GESTATIONAL trophoblastic disease , *DISEASE relapse , *HUMAN in vitro fertilization , *HUMAN embryology , *HOMOZYGOSITY - Abstract
Objective: To describe in vitro development of human embryos derived from an individual with a homozygous pathogenic variant in NLRP7 (19q13.42) and recurrent hydatidiform mole (HM), an autosomal recessive condition thought to occur secondary to an oocyte defect. Methods: A patient with five consecutive HM pregnancies was genomically evaluated via next generation sequencing followed by controlled ovarian hyperstimulation, in vitro fertilization (IVF) with intracytoplasmic sperm injection, embryo culture, and preimplantation genetic screening. Findings in NLRP7 were recorded and embryo culture and biopsy data were tabulated as a function of parental origin for any identified ploidy error. Results: The patient was found to have a pathogenic variant in NLRP7 (c.2810+2T>G) in a homozygous state. Fifteen oocytes were retrieved and 10 embryos were available after fertilization via intracytoplasmic sperm injection. Developmental arrest was noted for all 10 embryos after 144 hours in culture, thus no transfer was possible. These non-viable embryos were evaluated by karyomapping and all were diploid biparental; two were euploid and eight had various aneuploidies all of maternal origin. Conclusion: This is the first report of early human embryo development from a patient with any NLRP7 mutation. The pathogenic variant identified here resulted in global developmental arrest at or before blastocyst stage. Standard IVF should therefore be discouraged for such patients, who instead need to consider oocyte (or embryo) donation with IVF as preferred clinical methods to treat infertility. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
47. Barriers to completion of expanded carrier screening in an inner city population.
- Author
-
Strauss TS, Schneider E, Boniferro E, Brockhoff E, Johnson A, Stoffels G, Feldman K, Grubman O, Cole D, Hussain F, Ashmead G, Al-Ibraheemi Z, and Brustman L
- Subjects
- Pregnancy, Humans, Female, Genetic Carrier Screening methods, Retrospective Studies, Heterozygote, Genetic Counseling methods, Genetic Testing methods
- Abstract
Purpose: The American College of Medical Genetics and Genomics emphasizes a "consistent and equitable approach for offering carrier screening." At our academic center, publicly insured prenatal patients underwent universal expanded carrier screening (ECS) to promote equitable care. The aim of the study was to evaluate rates, time, and barriers to complete ECS. This was defined as post-test counseling and partner testing after a patient was found heterozygous for a pathogenic variant., Methods: In this descriptive retrospective cohort study from 2018 to 2021, patients were offered ECS, consisting of 283 recessive and X-linked genes. Heterozygotes were contacted by genetic counselors (≤5 attempts) for education and partner testing. Rates of counseling, partner testing, diagnostic procedures, follow-up times, and barriers to completion were assessed., Results: During this time, 643 women underwent ECS. Of these 643 women, 462 were heterozygotes and 326 of 462 had undergone counseling. Two hundred twenty-two of 462 partners obtained testing, with a median of 32 days from patient to partner result. Approximately 21 couples were heterozygous for the same pathogenic variant. One patient pursued diagnostic testing., Conclusion: ECS offers useful information; however, this study highlights significant barriers to completion. There was suboptimal patient follow-up and low partner screening, perhaps from insufficient time to educate and counsel. Future directions include implementing quality measures to ensure optimal completion., Competing Interests: Conflict of Interest The authors declare no conflicts of interest., (Copyright © 2023 American College of Medical Genetics and Genomics. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
48. Preconception genome medicine: current state and future perspectives to improve infertility diagnosis and reproductive and health outcomes based on individual genomic data
- Author
-
Vallari Shukla, Eva Hoffmann, Csilla Krausz, Antoni Riera-Escamilla, Carlos Simón, Miya Kudo Høffding, Antonio Capalbo, and Maurizio Poli
- Subjects
Male ,Infertility ,medicine.medical_specialty ,Population ,Reproductive medicine ,Genome-wide association study ,Bioinformatics ,polygenic medicine ,genetic diagnosis ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,reproductive genetics ,Outcome Assessment, Health Care ,medicine ,Genetic predisposition ,Humans ,whole-exome sequencing ,Prospective Studies ,education ,IVF/ICSI outcomes ,Exome sequencing ,030304 developmental biology ,Reproductive health ,Genetic testing ,0303 health sciences ,education.field_of_study ,030219 obstetrics & reproductive medicine ,medicine.diagnostic_test ,oocyte and embryo genetic defects ,business.industry ,Obstetrics and Gynecology ,Genomics ,medicine.disease ,3. Good health ,Reproductive Medicine ,whole-genome sequencing ,genomic sequencing ,preconception carrier screening ,Female ,infertility ,business ,Genome-Wide Association Study - Abstract
BACKGROUND Our genetic code is now readable, writable and hackable. The recent escalation of genome-wide sequencing (GS) applications in population diagnostics will not only enable the assessment of risks of transmitting well-defined monogenic disorders at preconceptional stages (i.e. carrier screening), but also facilitate identification of multifactorial genetic predispositions to sub-lethal pathologies, including those affecting reproductive fitness. Through GS, the acquisition and curation of reproductive-related findings will warrant the expansion of genetic assessment to new areas of genomic prediction of reproductive phenotypes, pharmacogenomics and molecular embryology, further boosting our knowledge and therapeutic tools for treating infertility and improving women’s health. OBJECTIVE AND RATIONALE In this article, we review current knowledge and potential development of preconception genome analysis aimed at detecting reproductive and individual health risks (recessive genetic disease and medically actionable secondary findings) as well as anticipating specific reproductive outcomes, particularly in the context of IVF. The extension of reproductive genetic risk assessment to the general population and IVF couples will lead to the identification of couples who carry recessive mutations, as well as sub-lethal conditions prior to conception. This approach will provide increased reproductive autonomy to couples, particularly in those cases where preimplantation genetic testing is an available option to avoid the transmission of undesirable conditions. In addition, GS on prospective infertility patients will enable genome-wide association studies specific for infertility phenotypes such as predisposition to premature ovarian failure, increased risk of aneuploidies, complete oocyte immaturity or blastocyst development failure, thus empowering the development of true reproductive precision medicine. SEARCH METHODS Searches of the literature on PubMed Central included combinations of the following MeSH terms: human, genetics, genomics, variants, male, female, fertility, next generation sequencing, genome exome sequencing, expanded carrier screening, secondary findings, pharmacogenomics, controlled ovarian stimulation, preconception, genetics, genome-wide association studies, GWAS. OUTCOMES Through PubMed Central queries, we identified a total of 1409 articles. The full list of articles was assessed for date of publication, limiting the search to studies published within the last 15 years (2004 onwards due to escalating research output of next-generation sequencing studies from that date). The remaining articles’ titles were assessed for pertinence to the topic, leaving a total of 644 articles. The use of preconception GS has the potential to identify inheritable genetic conditions concealed in the genome of around 4% of couples looking to conceive. Genomic information during reproductive age will also be useful to anticipate late-onset medically actionable conditions with strong genetic background in around 2–4% of all individuals. Genetic variants correlated with differential response to pharmaceutical treatment in IVF, and clear genotype–phenotype associations are found for aberrant sperm types, oocyte maturation, fertilization or pre- and post-implantation embryonic development. All currently known capabilities of GS at the preconception stage are reviewed along with persisting and forthcoming barriers for the implementation of precise reproductive medicine. WIDER IMPLICATIONS The expansion of sequencing analysis to additional monogenic and polygenic traits may enable the development of cost-effective preconception tests capable of identifying underlying genetic causes of infertility, which have been defined as ‘unexplained’ until now, thus leading to the development of a true personalized genomic medicine framework in reproductive health.
- Published
- 2020
49. IUI and uterine lavage of in vivo–produced blastocysts for PGT purposes: is it a technically and ethically reasonable perspective? Is it actually needed?
- Author
-
Daniela Zuccarello, Emanuele Licata, Catello Scarica, Danilo Cimadomo, Lucia De Santis, Laura Sosa Fernandez, Cinzia Di Pietro, Francesca Gioia Klinger, Antonio Capalbo, and Attilio Anastasi
- Subjects
0301 basic medicine ,Value (ethics) ,Opinion ,medicine.medical_specialty ,Reproductive medicine ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,medicine ,Genetics (clinical) ,Genetic testing ,Ethics ,Medical education ,Settore BIO/17 ,030219 obstetrics & reproductive medicine ,Ethical issues ,medicine.diagnostic_test ,Settore BIO/13 ,Perspective (graphical) ,Obstetrics and Gynecology ,General Medicine ,Special Interest Group ,Reproductive genetics ,PGT ,Preimplantation development ,Settore MED/46 ,Blastocyst ,Uterine lavage ,030104 developmental biology ,Settore MED/03 ,Reproductive Medicine ,Psychology ,Developmental Biology - Abstract
A recent study by Munné et al. portrayed a protocol to retrieve in vivo produced blastocysts after IUI and uterine lavage for preimplantation genetic testing (PGT) purposes. The authors claimed this protocol might represent a reasonable future perspective for patients who do not want to undergo IVF, but still want to be informed about their embryos’ genetic/chromosomal defects. Although the intent of making PGT available also to patients who cannot or do not need to undergo IVF is respectable, the value of this study is undermined by severe technical and ethical issues. Munné and colleagues’ paper was discussed within the executive committee (i.e., president and vice-president of the society, director and vice-director of the scientific committee, secretariat, and counselors), the special interest group in reproductive genetics, the scientific committee, and the collegio dei probiviri of the Italian Society of Embryology, Reproduction and Research (SIERR). The points raised from this discussion are summarized in this opinion paper.
- Published
- 2020
50. Maternal plasma genome-wide cell-free DNA can detect fetal aneuploidy in early and recurrent pregnancy loss and can be used to direct further workup
- Author
-
Yuval Yaron, Virginia Borobio, Montse Pauta, Antoni Borrell, Raigam Jafet Martinez-Portilla, Celia Badenas, Anna Soler, Carmen Illanes, and Fernanda Paz-y-Miño
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Early Pregnancy Loss ,Aneuploidy ,Chromosome Disorders ,cell-free DNA ,03 medical and health sciences ,Plasma ,0302 clinical medicine ,chromosome anomalies ,Pregnancy ,noninvasive ,medicine ,Humans ,Prospective Studies ,aneuploidy ,Fetus ,030219 obstetrics & reproductive medicine ,recurrent pregnancy loss ,business.industry ,Obstetrics ,Rehabilitation ,Obstetrics and Gynecology ,General Medicine ,Reproductive Genetics ,medicine.disease ,030104 developmental biology ,Reproductive Medicine ,Cell-free fetal DNA ,Products of conception ,Cohort ,Chromosome abnormality ,Gestation ,Female ,Original Article ,business ,Cell-Free Nucleic Acids - Abstract
STUDY QUESTION Can maternal plasma cell-free DNA (cfDNA) detect chromosomal anomalies in early pregnancy loss (EPL) and recurrent pregnancy loss (RPL)? SUMMARY ANSWER Genome-wide cfDNA testing can serve as an alternative to cytogenetic analysis in products of conception (POCs) in RPLs and can guide further management. WHAT IS KNOWN ALREADY Random chromosomal anomalies are the single most common cause for EPL and RPL. Cytogenetic analysis in POCs may be used to direct management in RPL because the detection of random chromosomal anomalies can eliminate further unwarranted testing. STUDY DESIGN, SIZE, DURATION This was a prospective diagnostic test study from March 2018 to January 2019 of 109 patients experiencing pregnancy loss before 14 weeks gestation at a tertiary-care academic medical center. PARTICIPANTS/MATERIALS, SETTING, METHODS Blood samples were drawn for genome-wide cfDNA testing prior to chorionic villous sampling for cytogenetic analysis of POCs with both short-term cultures (STCs) and long-term cultures (LTCs). Final analysis included 86 patients with non-mosaic cytogenetic results in POCs and available cfDNA results. Aneuploidy detection rates by cfDNA testing and POC cytogenetic analysis were compared. The first 50 samples served as the Training Set to establish pregnancy loss-specific log-likelihood ratio (LLR) thresholds using receiver-operator characteristic (ROC)-like analyses. These were then used for the entire cohort. MAIN RESULTS AND THE ROLE OF CHANCE Seventy-eight samples (71.5%) had results available from both STC and LTC; 12 samples (11%) had a result from STC only, and 7 samples (6.4%) had a result from LTC only. A chromosomal anomaly was detected in 55/86 (64%). The rates of chromosomal anomalies were 61, 72, 73 and 44% in patients undergoing their first, second, third and ≥4th pregnancy losses, respectively. The median cfDNA fetal fraction was 5%. With standard LLR thresholds used for noninvasive prenatal screening, the sensitivity of cfDNA in detecting aneuploidy was 55% (30/55) and with a specificity of 100% (31/31). Using pregnancy loss-specific LLR thresholds, the sensitivity of cfDNA in detecting aneuploidy was 82% (45/55), with a specificity of 90% (28/31). The positive and negative likelihood ratios were 8.46 and 0.20, respectively. Fetal sex was correctly assigned in all cases. LIMITATIONS, REASONS FOR CAUTION Cases with a false-positive result by cfDNA analysis would not receive the indicated RPL workup. Specificity could be improved by using a fetal fraction (FF) cutoff of 4%, but this would result in exclusion of more than a quarter of cases. WIDER IMPLICATIONS OF THE FINDINGS cfDNA-based testing can serve as an alternative to POC cytogenetic analysis and can guide further RPL management: if cfDNA demonstrates aneuploidy, no further action is taken and if no abnormality is detected, the recommended RPL workup is performed. STUDY FUNDING/COMPETING INTEREST(S) Cell-free DNA testing was funded by Illumina, Inc., San Diego, CA. Y.Y. is a member of Illumina’s Clinical Expert Panel and has received travel grants. A.B. has received travel grants from Illumina. All authors have no competing interest to declare.
- Published
- 2020
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.