10 results on '"Renfro, D."'
Search Results
2. The Gene Ontology in 2010: extensions and refinements
- Author
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Berardini, Tz, Li, D, Huala, E, Bridges, S, Burgess, S, Mccarthy, F, Carbon, S, Lewis, Se, Mungall, Cj, Abdulla, A, Wood, V, Feltrin, E, Valle, Giorgio, Chisholm, Rl, Fey, P, Gaudet, P, Kibbe, W, Basu, S, Bushmanova, Y, Eilbeck, K, Siegele, Da, Mcintosh, B, Renfro, D, Zweifel, A, Hu, Jc, Ashburner, M, Tweedie, S, ALAM FARUQUE, Y, Apweiler, R, Auchinchloss, A, Bairoch, A, Barrell, D, Binns, D, Blatter, Mc, Bougueleret, L, Boutet, E, Breuza, L, Bridge, A, Browne, P, Chan, Wm, Coudert, E, Daugherty, L, Dimmer, E, Eberhardt, R, Estreicher, A, Famiglietti, L, FERRO ROJAS, S, Feuermann, M, Foulger, R, GRUAZ GUMOWSKI, N, Hinz, U, Huntley, R, Jimenez, S, Jungo, F, Keller, G, Laiho, K, Legge, D, Lemercier, P, Lieberherr, D, Magrane, M, O'Donovan, C, Pedruzzi, I, Poux, S, Rivoire, C, Roechert, B, Sawford, T, Schneider, M, Stanley, E, Stutz, A, Sundaram, S, Tognolli, M, Xenarios, I, Harris, Ma, Deegan, Ji, Ireland, A, Lomax, J, Jaiswal, P, Chibucos, M, Giglio, Mg, Wortman, J, Hannick, L, Madupu, R, Botstein, D, Dolinski, K, Livstone, Ms, Oughtred, R, Blake, Ja, Bult, C, Diehl, Ad, Dolan, M, Drabkin, H, Eppig, Jt, Hill, Dp, Ni, L, Ringwald, M, Sitnikov, D, Collmer, C, TORTO ALALIBO, T, Laulederkind, S, Shimoyama, M, Twigger, S, D'Eustachio, P, Matthews, L, Balakrishnan, R, Binkley, G, Cherry, Jm, Christie, Kr, Costanzo, Mc, Engel, Sr, Fisk, Dg, Hirschman, Je, Hitz, Bc, Hong, El, Krieger, Cj, Miyasato, Sr, Nash, Rs, Park, J, Skrzypek, Ms, Weng, S, Wong, Ed, Aslett, M, Chan, J, Kishore, R, Sternberg, P, VAN AUKE, K, Khodiyar, Vk, Lovering, Rc, Talmud, Pj, Howe, D, Westerfield, M., Gene Ontology Consortium, Berardini, TZ., Li, D., Huala, E., Bridges, S., Burgess, S., McCarthy, F., Carbon, S., Lewis, SE., Mungall, CJ., Abdulla, A., Wood, V., Feltrin, E., Valle, G., Chisholm, RL., Fey, P., Gaudet, P., Kibbe, W., Basu, S., Bushmanova, Y., Eilbeck, K., Siegele, DA., McIntosh, B., Renfro, D., Zweifel, A., Hu, JC., Ashburner, M., Tweedie, S., Alam-Faruque, Y., Apweiler, R., Auchinchloss, A., Bairoch, A., Barrell, D., Binns, D., Blatter, MC., Bougueleret, L., Boutet, E., Breuza, L., Bridge, A., Browne, P., Chan, WM., Coudert, E., Daugherty, L., Dimmer, E., Eberhardt, R., Estreicher, A., Famiglietti, L., Ferro-Rojas, S., Feuermann, M., Foulger, R., Gruaz-Gumowski, N., Hinz, U., Huntley, R., Jimenez, S., Jungo, F., Keller, G., Laiho, K., Legge, D., Lemercier, P., Lieberherr, D., Magrane, M., O'Donovan, C., Pedruzzi, I., Poux, S., Rivoire, C., Roechert, B., Sawford, T., Schneider, M., Stanley, E., Stutz, A., Sundaram, S., Tognolli, M., Xenarios, I., Harris, MA., Deegan, JI., Ireland, A., Lomax, J., Jaiswal, P., Chibucos, M., Giglio, MG., Wortman, J., Hannick, L., Madupu, R., Botstein, D., Dolinski, K., Livstone, MS., Oughtred, R., Blake, JA., Bult, C., Diehl, AD., Dolan, M., Drabkin, H., Eppig, JT., Hill, DP., Ni, L., Ringwald, M., Sitnikov, D., Collmer, C., Torto-Alalibo, T., Laulederkind, S., Shimoyama, M., Twigger, S., D'Eustachio, P., Matthews, L., Balakrishnan, R., Binkley, G., Cherry, JM., Christie, KR., Costanzo, MC., Engel, SR., Fisk, DG., Hirschman, JE., Hitz, BC., Hong, EL., Krieger, CJ., Miyasato, SR., Nash, RS., Park, J., Skrzypek, MS., Weng, S., Wong, ED., Aslett, M., Chan, J., Kishore, R., Sternberg, P., Van Auke, K., Khodiyar, VK., Lovering, RC., Talmud, PJ., Howe, D., and Westerfield, M.
- Subjects
Information Storage and Retrieval ,Ontology (information science) ,Biology ,Bioinformatics ,World Wide Web ,Set (abstract data type) ,03 medical and health sciences ,Annotation ,User-Computer Interface ,0302 clinical medicine ,Controlled vocabulary ,Databases, Genetic ,Genetics ,Animals ,Humans ,Databases, Protein ,Computational Biology/methods ,Computational Biology/trends ,Databases, Nucleic Acid ,Genomics ,Information Storage and Retrieval/methods ,Internet ,Software ,Vocabulary, Controlled ,030304 developmental biology ,Structure (mathematical logic) ,0303 health sciences ,Gene ontology ,business.industry ,Computational Biology ,Usability ,Articles ,ComputingMethodologies_GENERAL ,business ,030217 neurology & neurosurgery - Abstract
The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with existing relationships, to create links between and within the GO domains. These improve the representation of biology, facilitate querying, and allow GO developers to systematically check for and correct inconsistencies within the GO. Gene product annotation using GO continues to increase both in the number of total annotations and in species coverage. GO tools, such as OBO-Edit, an ontology-editing tool, and AmiGO, the GOC ontology browser, have seen major improvements in functionality, speed and ease of use.
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- 2010
3. On unions of porous sets
- Author
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Marek Balcerzak, Wojdowski, W., and Renfro, D. L.
- Subjects
Mathematics::Logic ,04A15 ,Mathematics::General Topology ,ideal of sets ,porous set ,Cantor-Bendixson rank ,26A21 ,countable compact set ,28A05 ,Physics::Geophysics - Abstract
Some results about finite and countable unions of porous sets are established.
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- 1995
4. MetaBase--the wiki-database of biological databases
- Author
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Bolser, D. M., primary, Chibon, P.-Y., additional, Palopoli, N., additional, Gong, S., additional, Jacob, D., additional, Angel, V. D. D., additional, Swan, D., additional, Bassi, S., additional, Gonzalez, V., additional, Suravajhala, P., additional, Hwang, S., additional, Romano, P., additional, Edwards, R., additional, Bishop, B., additional, Eargle, J., additional, Shtatland, T., additional, Provart, N. J., additional, Clements, D., additional, Renfro, D. P., additional, Bhak, D., additional, and Bhak, J., additional
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- 2011
- Full Text
- View/download PDF
5. Evaluation of a Demountable Tangential Flow Torch for Microwave-Induced Plasma Atomic Emission Spectrometry
- Author
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McCleary, K. A., primary, Ducatte, G. R., additional, Renfro, D. H., additional, and Long, G. L., additional
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- 1993
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6. Improving the Discharge Process at the VA Palo Alto Through Change Management and Implementation of Project Re-Engineered Discharge.
- Author
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Arredondo K, Renfro DR, Naungayan A, Renfro D, Burgos S, Yarlagadda S, Horstman MJ, Naik AD, and Godwin KM
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- Humans, Rehabilitation Nursing methods, Rehabilitation Nursing standards, Change Management, United States, Hospitals, Veterans standards, United States Department of Veterans Affairs organization & administration, Patient Discharge standards, Quality Improvement
- Abstract
Abstract: This quality improvement project demonstrates that nursing leadership with Project Re-Engineered Discharge can effect change in the discharge process and improve patient outcomes., (Copyright © 2024 Association of Rehabilitation Nurses.)
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- 2024
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7. Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).
- Author
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Ramsey J, McIntosh B, Renfro D, Aleksander SA, LaBonte S, Ross C, Zweifel AE, Liles N, Farrar S, Gill JJ, Erill I, Ades S, Berardini TZ, Bennett JA, Brady S, Britton R, Carbon S, Caruso SM, Clements D, Dalia R, Defelice M, Doyle EL, Friedberg I, Gurney SMR, Hughes L, Johnson A, Kowalski JM, Li D, Lovering RC, Mans TL, McCarthy F, Moore SD, Murphy R, Paustian TD, Perdue S, Peterson CN, Prüß BM, Saha MS, Sheehy RR, Tansey JT, Temple L, Thorman AW, Trevino S, Vollmer AC, Walbot V, Willey J, Siegele DA, and Hu JC
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- Computational Biology, Databases, Genetic, Humans, Proteins genetics, Proteins physiology, Crowdsourcing methods, Gene Ontology, Molecular Sequence Annotation methods
- Abstract
Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying gene function, especially within model organisms. Unprecedented expansion of the scientific literature and validation of the predicted proteins have increased both data value and the challenges of keeping pace. Capturing literature-based functional annotations is limited by the ability of biocurators to handle the massive and rapidly growing scientific literature. Within the community-oriented wiki framework for GO annotation called the Gene Ontology Normal Usage Tracking System (GONUTS), we describe an approach to expand biocuration through crowdsourcing with undergraduates. This multiplies the number of high-quality annotations in international databases, enriches our coverage of the literature on normal gene function, and pushes the field in new directions. From an intercollegiate competition judged by experienced biocurators, Community Assessment of Community Annotation with Ontologies (CACAO), we have contributed nearly 5,000 literature-based annotations. Many of those annotations are to organisms not currently well-represented within GO. Over a 10-year history, our community contributors have spurred changes to the ontology not traditionally covered by professional biocurators. The CACAO principle of relying on community members to participate in and shape the future of biocuration in GO is a powerful and scalable model used to promote the scientific enterprise. It also provides undergraduate students with a unique and enriching introduction to critical reading of primary literature and acquisition of marketable skills., Competing Interests: The authors have declared that no competing interests exist.
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- 2021
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8. Implementing a Perioperative RN Training Program for Recent Graduates.
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Byrd D, Mullen L, Renfro D, and Harris TA
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- Curriculum, Personnel Staffing and Scheduling, Education, Nursing, Graduate organization & administration, Perioperative Nursing education
- Abstract
In 2010, nurse educators at one health care facility implemented a new program that emphasized placing new graduates in specialty areas, including the hemodialysis unit, the gastroenterology unit, and the OR. Managers in the OR faced staffing challenges because of the difficulty in recruiting and retaining experienced perioperative nurses and the expected retirement of a significant number of staff members. Surgical services managers agreed to participate in the new graduate program and decided to use AORN's Periop 101™ course and a series of monthly simulation training sessions to supplement the program and provide recently graduated nurses with a strong perioperative nursing foundation. In three years, a total of nine newly graduated RNs successfully completed the program. The three-year retention rate was 78%., (Copyright © 2015 AORN, Inc. Published by Elsevier Inc. All rights reserved.)
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- 2015
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9. A home telehealth heart failure management program for veterans through care transitions.
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Baldonado A, Rodriguez L, Renfro D, Sheridan SB, McElrath M, and Chardos J
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- Chronic Disease, Disease Management, Humans, Models, Nursing, Palliative Care, Patient Readmission statistics & numerical data, United States, Heart Failure therapy, Home Care Services organization & administration, Patient Handoff, Telemedicine organization & administration, Veterans
- Abstract
Heart failure (HF) is a new epidemic in the United States. Advanced HF is a fatal illness affecting our veterans and causing frequent hospital readmissions in both the Veterans Affairs hospital and throughout the nation's healthcare system. The clinician's obligation is to offer the best alternatives in the care of chronic illness. The Veterans Affairs healthcare system has a comprehensive approach to treating HF. The comprehensive implementation of home telehealth, clinical informatics, and disease management supports the care of patients with advanced HF.
- Published
- 2013
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10. Gene Ontology annotations and resources.
- Author
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Blake JA, Dolan M, Drabkin H, Hill DP, Li N, Sitnikov D, Bridges S, Burgess S, Buza T, McCarthy F, Peddinti D, Pillai L, Carbon S, Dietze H, Ireland A, Lewis SE, Mungall CJ, Gaudet P, Chrisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Bely B, Blatter M-, Bonilla C, Bouguerleret L, Boutet E, Breuza L, Bridge A, Chan WM, Chavali G, Coudert E, Dimmer E, Estreicher A, Famiglietti L, Feuermann M, Gos A, Gruaz-Gumowski N, Hieta R, Hinz C, Hulo C, Huntley R, James J, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Mutowo-Muellenet P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millán P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulgar R, Lomax J, Roncaglia P, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Giglio MG, Chang H-, Hunter S, McAnulla C, Mitchell A, Sangrador A, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall DM, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang S-, Petri V, Lowry T, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hitz BC, Hong EL, Karra K, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Huala E, Mi H, Thomas PD, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, and Westerfield M
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- Internet, Phylogeny, Databases, Genetic, Genes, Molecular Sequence Annotation, Vocabulary, Controlled
- Abstract
The Gene Ontology (GO) Consortium (GOC, http://www.geneontology.org) is a community-based bioinformatics resource that classifies gene product function through the use of structured, controlled vocabularies. Over the past year, the GOC has implemented several processes to increase the quantity, quality and specificity of GO annotations. First, the number of manual, literature-based annotations has grown at an increasing rate. Second, as a result of a new 'phylogenetic annotation' process, manually reviewed, homology-based annotations are becoming available for a broad range of species. Third, the quality of GO annotations has been improved through a streamlined process for, and automated quality checks of, GO annotations deposited by different annotation groups. Fourth, the consistency and correctness of the ontology itself has increased by using automated reasoning tools. Finally, the GO has been expanded not only to cover new areas of biology through focused interaction with experts, but also to capture greater specificity in all areas of the ontology using tools for adding new combinatorial terms. The GOC works closely with other ontology developers to support integrated use of terminologies. The GOC supports its user community through the use of e-mail lists, social media and web-based resources.
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- 2013
- Full Text
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