103 results on '"Reith, F"'
Search Results
2. Applying the Midas touch: Differing toxicity of mobile gold and platinum complexes drives biomineralization in the bacterium Cupriavidus metallidurans
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Etschmann, B., Brugger, J., Fairbrother, L., Grosse, C., Nies, D.H., Martinez-Criado, G., and Reith, F.
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- 2016
- Full Text
- View/download PDF
3. Platinum in Earth surface environments
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Reith, F., Campbell, S.G., Ball, A.S., Pring, A., and Southam, G.
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- 2014
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- View/download PDF
4. Bioleaching of a low-grade copper ore, linking leach chemistry and microbiology
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Watling, H.R., Collinson, D.M., Li, J., Mutch, L.A., Perrot, F.A., Rea, S.M., Reith, F., and Watkin, E.L.J.
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- 2014
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- View/download PDF
5. Supergene gold transformation: Biogenic secondary and nano-particulate gold from arid Australia
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Fairbrother, L., Brugger, J., Shapter, J., Laird, J.S., Southam, G., and Reith, F.
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- 2012
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- View/download PDF
6. Mobility and microbially mediated mobilization of gold and arsenic in soils from two gold mines in semi-arid and tropical Australia
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Reith, F. and McPhail, D.C.
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- 2007
- Full Text
- View/download PDF
7. Effect of resident microbiota on the solubilization of gold in soil from the Tomakin Park Gold Mine, New South Wales, Australia
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Reith, F. and McPhail, D.C.
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- 2006
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- View/download PDF
8. Application of Deep Learning to Predict Standardized Uptake Value Ratio and Amyloid Status on 18F-Florbetapir PET Using ADNI Data
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Reith, F., primary, Koran, M.E., additional, Davidzon, G., additional, and Zaharchuk, G., additional
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- 2020
- Full Text
- View/download PDF
9. Revisiting hydrocarbon phase mobilization of Au in the Au–Hg McLaughlin Mine, Geysers/Clear Lake area, California
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Crede, L.S., Evans, Katy, Rempel, Kirsten, Brugger, J., Etschmann, B., Bourdet, J., Reith, F., Crede, L.S., Evans, Katy, Rempel, Kirsten, Brugger, J., Etschmann, B., Bourdet, J., and Reith, F.
- Abstract
Carbonaceous material (CM)-enriched silica is co-located with gold (Au) mineralization at the Au–Hg McLaughlin deposit, Geysers/Clear Lake area, California, U.S.A. The co-location suggests that hydrocarbons (HC) may be involved in mineralization and metal concentration processes, but little is known about the role of HC in the formation of ore deposits. Previous studies noted liquid oil inclusions in samples from the McLaughlin deposit, and proposed that the HC were liquid at the time of ore deposition. Hydrocarbon materials in the McLaughlin deposit occur as solid and liquid. Textural evidence suggests that hydrocarbon-rich and aqueous, silica-rich fluids were present simultaneously, as well as separately in alternating pulses. Synchrotron X-ray fluorescence microscopy of microscopic silica-free carbonaceous material reveals that the CM contains abundant ore metals e.g., Au, Ag, Hg, and Pb. The CM could have become metal-enriched by scavenging metals from other ore fluids, or it could have transported metals when the CM was still liquid, with subsequent in-situ degradation due to hydrothermal heat. Gold concentrations of up to 18 ppm were measured via acid digestion of solid and liquid HC material and subsequent inductively coupled plasma–mass spectrometry (ICP–MS) analyses. Hydrocarbon material with liquid to medium viscous properties bearing 10.8 ppm Au provides evidence that Au in liquid HC in the McLaughlin Au-Hg deposit is still mobile and that remobilization and/or transport of metals to the deposit by HC liquids cannot be ruled out.
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- 2020
10. Integrated Assessment of Carbon Dioxide Removal
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Rickels, W., primary, Reith, F., additional, Keller, D., additional, Oschlies, A., additional, and Quaas, M. F., additional
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- 2018
- Full Text
- View/download PDF
11. Synergistic gold–copper detoxification at the core of gold biomineralisation inCupriavidus metallidurans
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Bütof, L., primary, Wiesemann, N., additional, Herzberg, M., additional, Altzschner, M., additional, Holleitner, A., additional, Reith, F., additional, and Nies, D. H., additional
- Published
- 2018
- Full Text
- View/download PDF
12. Introducing BASE: the Biomes of Australian soil environments soil microbial diversity database
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Bissett, A., Fitzgerald, A., Meintjes, T., Mele, P.M., Reith, F., Dennis, P.G., Breed, M.F., Brown, B., Brown, M.V., Brugger, J., Byrne, M., Caddy-Retalic, S., Carmody, B., Coates, D.J., Correa, C., Ferrari, B.C., Gupta, V.V.S.R., Hamonts, K., Haslem, A., Hugenholtz, P., Karan, M., Koval, J., Lowe, A.J., MacDonald, S., McGrath, L., Martin, D., Morgan, M., North, K.I., Paungfoo-Lonhienne, C., Pendall, E., Phillips, L., Pirzl, R., Powell, J.R., Ragan, M.A., Schmidt, S., Seymour, N., Snape, I., Stephen, J.R., Stevens, M., Tinning, M., Williams, K., Yeoh, Y.K., Zammit, C.M., Young, A., Bissett, A., Fitzgerald, A., Meintjes, T., Mele, P.M., Reith, F., Dennis, P.G., Breed, M.F., Brown, B., Brown, M.V., Brugger, J., Byrne, M., Caddy-Retalic, S., Carmody, B., Coates, D.J., Correa, C., Ferrari, B.C., Gupta, V.V.S.R., Hamonts, K., Haslem, A., Hugenholtz, P., Karan, M., Koval, J., Lowe, A.J., MacDonald, S., McGrath, L., Martin, D., Morgan, M., North, K.I., Paungfoo-Lonhienne, C., Pendall, E., Phillips, L., Pirzl, R., Powell, J.R., Ragan, M.A., Schmidt, S., Seymour, N., Snape, I., Stephen, J.R., Stevens, M., Tinning, M., Williams, K., Yeoh, Y.K., Zammit, C.M., and Young, A.
- Abstract
Background Microbial inhabitants of soils are important to ecosystem and planetary functions, yet there are large gaps in our knowledge of their diversity and ecology. The ‘Biomes of Australian Soil Environments’ (BASE) project has generated a database of microbial diversity with associated metadata across extensive environmental gradients at continental scale. As the characterisation of microbes rapidly expands, the BASE database provides an evolving platform for interrogating and integrating microbial diversity and function. Findings BASE currently provides amplicon sequences and associated contextual data for over 900 sites encompassing all Australian states and territories, a wide variety of bioregions, vegetation and land-use types. Amplicons target bacteria, archaea and general and fungal-specific eukaryotes. The growing database will soon include metagenomics data. Data are provided in both raw sequence (FASTQ) and analysed OTU table formats and are accessed via the project’s data portal, which provides a user-friendly search tool to quickly identify samples of interest. Processed data can be visually interrogated and intersected with other Australian diversity and environmental data using tools developed by the ‘Atlas of Living Australia’. Conclusions Developed within an open data framework, the BASE project is the first Australian soil microbial diversity database. The database will grow and link to other global efforts to explore microbial, plant, animal, and marine biodiversity. Its design and open access nature ensures that BASE will evolve as a valuable tool for documenting an often overlooked component of biodiversity and the many microbe-driven processes that are essential to sustain soil function and ecosystem services.
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- 2016
13. Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
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Bissett, A, Fitzgerald, A, Meintjes, T, Mele, PM, Reith, F, Dennis, PG, Breed, MF, Brown, B, Brown, MV, Brugger, J, Byrne, M, Caddy-Retalic, S, Carmody, B, Coates, DJ, Correa, C, Ferrari, BC, Gupta, VVSR, Hamonts, K, Haslem, A, Hugenholtz, P, Karan, M, Koval, J, Lowe, AJ, Macdonald, S, McGrath, L, Martin, D, Morgan, M, North, KI, Paungfoo-Lonhienne, C, Pendall, E, Phillips, L, Pirzl, R, Powell, JR, Ragan, MA, Schmidt, S, Seymour, N, Snape, I, Stephen, JR, Stevens, M, Tinning, M, Williams, K, Yeoh, YK, Zammit, CM, Young, A, Bissett, A, Fitzgerald, A, Meintjes, T, Mele, PM, Reith, F, Dennis, PG, Breed, MF, Brown, B, Brown, MV, Brugger, J, Byrne, M, Caddy-Retalic, S, Carmody, B, Coates, DJ, Correa, C, Ferrari, BC, Gupta, VVSR, Hamonts, K, Haslem, A, Hugenholtz, P, Karan, M, Koval, J, Lowe, AJ, Macdonald, S, McGrath, L, Martin, D, Morgan, M, North, KI, Paungfoo-Lonhienne, C, Pendall, E, Phillips, L, Pirzl, R, Powell, JR, Ragan, MA, Schmidt, S, Seymour, N, Snape, I, Stephen, JR, Stevens, M, Tinning, M, Williams, K, Yeoh, YK, Zammit, CM, and Young, A
- Abstract
BACKGROUND: Microbial inhabitants of soils are important to ecosystem and planetary functions, yet there are large gaps in our knowledge of their diversity and ecology. The 'Biomes of Australian Soil Environments' (BASE) project has generated a database of microbial diversity with associated metadata across extensive environmental gradients at continental scale. As the characterisation of microbes rapidly expands, the BASE database provides an evolving platform for interrogating and integrating microbial diversity and function. FINDINGS: BASE currently provides amplicon sequences and associated contextual data for over 900 sites encompassing all Australian states and territories, a wide variety of bioregions, vegetation and land-use types. Amplicons target bacteria, archaea and general and fungal-specific eukaryotes. The growing database will soon include metagenomics data. Data are provided in both raw sequence (FASTQ) and analysed OTU table formats and are accessed via the project's data portal, which provides a user-friendly search tool to quickly identify samples of interest. Processed data can be visually interrogated and intersected with other Australian diversity and environmental data using tools developed by the 'Atlas of Living Australia'. CONCLUSIONS: Developed within an open data framework, the BASE project is the first Australian soil microbial diversity database. The database will grow and link to other global efforts to explore microbial, plant, animal, and marine biodiversity. Its design and open access nature ensures that BASE will evolve as a valuable tool for documenting an often overlooked component of biodiversity and the many microbe-driven processes that are essential to sustain soil function and ecosystem services.
- Published
- 2016
14. Pleistocene paleodrainage and placer gold redistribution, western Southland, New Zealand
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Craw, D, primary, Kerr, G, additional, Reith, F, additional, and Falconer, D, additional
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- 2015
- Full Text
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15. Synergistic gold–copper detoxification at the core of gold biomineralisation in Cupriavidus metallidurans.
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Bütof, L., Wiesemann, N., Herzberg, M., Altzschner, M., Holleitner, A., Reith, F., and Nies, D. H.
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- 2018
- Full Text
- View/download PDF
16. Bioleaching of a low-grade copper ore: Linking leach chemistry and microbiology
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Watling, H., Collinson, D., Li, J., Mutch, Lesley, Perrot, F., Rea, S., Reith, F., Watkin, Elizabeth, Watling, H., Collinson, D., Li, J., Mutch, Lesley, Perrot, F., Rea, S., Reith, F., and Watkin, Elizabeth
- Abstract
Three largely-independent studies were undertaken on the same heap leach system during the period of transition from processing oxidised ores to sulfide ores: monitoring of heap solutions for microorganisms, analysis of samples from a spent heap, and column tests. Microbial cell numbers and diversity were monitored in process water samples from the transition heap over a four-year period. Cell numbers remained low throughout, 1–30 × 104 cells mL−1, possibly reflecting growth inhibition by the high element concentrations in process water. High iron, magnesium and aluminium concentrations in spent heap pregnant leach solution (PLS) are attributed to siderite and clinochlore dissolution and would be expected to impact on microbial growth. Planktonic cell numbers in a column leachate declined rapidly by two orders of magnitude when concentrations of ferric ion and sulfate exceeded 30 and 75 g L−1, respectively. Nevertheless, a variety of bacterial strains closely related to Acidithiobacillus (At.) ferrooxidans, At. caldus, Leptospirillum (L.) ferriphilum, Acidimicrobium (Am.) ferrooxidans, Acidiphilium (Ap.) cryptum, an Alicyclobacillus-related strain and Sulfobacillus (S.) thermosulfidooxidans, and the archaeon Ferroplasma (F.) acidiphilum were isolated, mainly from the more acidic intermediate leach solutions (ILS).Overall, the results obtained from the use of culture-dependent and culture-independent methods of community analysis were complementary and consistent. The majority of identified genera and species were present in both the process water samples from the operating heap and the solutions and ore samples from the spent heap. In the spent heap, distinct populations dominated different sample types. Leptospirillum- and Acidithiobacillus-like strains dominated PLS samples and Leptospirillum also dominated seven of eight spent ore samples and all of the heap sediment samples, making it the primary iron(II) oxidising species.
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- 2014
17. Biomineralization of Gold in Biofilms of Cupriavidus metallidurans
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Fairbrother, L., primary, Etschmann, B., additional, Brugger, J., additional, Shapter, J., additional, Southam, G., additional, and Reith, F., additional
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- 2013
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18. Potential for the utilisation of micro-organisms in gold processing.
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Reith F., World gold 2007, Cairns, Australia, 22-24 Oct. 2007, Brugger J., McPhail D.C, Rogers S.L., Reith F., World gold 2007, Cairns, Australia, 22-24 Oct. 2007, Brugger J., McPhail D.C, and Rogers S.L.
- Abstract
The development is discussed of environmentally friendly, cost-efficient leaching and concentration techniques for refractory Au ores based on micro-organisms. This may be possible by adapting the results of recent regolith geoscience research, which has shown that microorganisms are capable of driving a biogeochemical cycle of Au dispersion, transport and re-concentration in the supergene environment. The indigenous microbiota in biologically active soil microcosms from a number of Australian sites are capable of solubilising up to 80 wt% of the Au contained in these materials during 50 days of incubation. A metallophilic bacterium, Ralstonia metallidurans, is present in biofilms on Au grains from a number of Australian sites and is capable of actively accumulating Au from solution, suggesting that it may contribute to the formation of secondary Au grains and nuggets. Processes that warrant further investigations are the production of thiosulphate by iron- and sulphur-oxidising bacteria during the breakdown of sulphide, which may be used to directly solubilise Au during bio-oxidation, and the biogenic production of free amino acids and cyanide for the solubilisation of Au., The development is discussed of environmentally friendly, cost-efficient leaching and concentration techniques for refractory Au ores based on micro-organisms. This may be possible by adapting the results of recent regolith geoscience research, which has shown that microorganisms are capable of driving a biogeochemical cycle of Au dispersion, transport and re-concentration in the supergene environment. The indigenous microbiota in biologically active soil microcosms from a number of Australian sites are capable of solubilising up to 80 wt% of the Au contained in these materials during 50 days of incubation. A metallophilic bacterium, Ralstonia metallidurans, is present in biofilms on Au grains from a number of Australian sites and is capable of actively accumulating Au from solution, suggesting that it may contribute to the formation of secondary Au grains and nuggets. Processes that warrant further investigations are the production of thiosulphate by iron- and sulphur-oxidising bacteria during the breakdown of sulphide, which may be used to directly solubilise Au during bio-oxidation, and the biogenic production of free amino acids and cyanide for the solubilisation of Au.
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- 2007
19. Geomicrobiology: a new perspective on regolith dispersion.
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Rogers S.L., Kalgoorlie '07, Kalgoorlie, Western Australia, Geoconferences (WA) Inc, 25-27 Sept. 2007, Reith F., Rogers S.L., Kalgoorlie '07, Kalgoorlie, Western Australia, Geoconferences (WA) Inc, 25-27 Sept. 2007, and Reith F.
- Abstract
The results are discussed of research which shows that microbiota resident in Australian auriferous soils are capable of mediating a geomicrobiological Au cycle. Methods have been developed for characterising microbial populations to study regolith microorganisms based on analysis of genetic materials such as DNA and RNA extracted directly from regolith materials without prior cultivation. Microbial processes involved in the transformation of sulphide minerals are described. The oxidation reaction rates are orders of magnitude higher than in the absence of microorganisms., The results are discussed of research which shows that microbiota resident in Australian auriferous soils are capable of mediating a geomicrobiological Au cycle. Methods have been developed for characterising microbial populations to study regolith microorganisms based on analysis of genetic materials such as DNA and RNA extracted directly from regolith materials without prior cultivation. Microbial processes involved in the transformation of sulphide minerals are described. The oxidation reaction rates are orders of magnitude higher than in the absence of microorganisms.
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- 2007
20. Biomediation of calcrete at the gold anomaly of the Barns prospect, Gawler Craton, South Australia.
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Schmidt Mumm A., Reith F., Schmidt Mumm A., and Reith F.
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The geochemical properties of aeolian dunes were investigated along several depth profiles to assess the relationship between Au mobility and calcrete formation. A strongly systematic relationship between Au and the increasing Ca-Mg contents at depth highlighted the close association between the enrichment of Au in the calcrete and the underlying hydrothermal mineralisation. Intense calcrete formation and concurrent Au enrichment also occur in the vicinity of roots penetrating the dune. The genesis of calcrete and pedogenic carbonate may be partly biologically mediated through processes such as the metabolic breakdown of urea by resident microbiota. Organic Au complexes such as Au-amino acid complexes may become destabilised in solution and Au may be co-precipitated, resulting in the fine, non-particulate distribution of Au throughout the micritic calcrete carbonate. The results suggest a coupled mechanism of biologically mediated and inorganic mechanisms leading to the formation of Au-in-calcrete anomalies., The geochemical properties of aeolian dunes were investigated along several depth profiles to assess the relationship between Au mobility and calcrete formation. A strongly systematic relationship between Au and the increasing Ca-Mg contents at depth highlighted the close association between the enrichment of Au in the calcrete and the underlying hydrothermal mineralisation. Intense calcrete formation and concurrent Au enrichment also occur in the vicinity of roots penetrating the dune. The genesis of calcrete and pedogenic carbonate may be partly biologically mediated through processes such as the metabolic breakdown of urea by resident microbiota. Organic Au complexes such as Au-amino acid complexes may become destabilised in solution and Au may be co-precipitated, resulting in the fine, non-particulate distribution of Au throughout the micritic calcrete carbonate. The results suggest a coupled mechanism of biologically mediated and inorganic mechanisms leading to the formation of Au-in-calcrete anomalies.
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- 2007
21. Potential utilisation of micro-organisms in gold processing: a review
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Reith, F, primary, Zammit, C M, additional, Rogers, S L, additional, McPhail, D C, additional, and Brugger, J, additional
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- 2012
- Full Text
- View/download PDF
22. Poster session 3
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Nanka, O., primary, Krejci, E., additional, Pesevski, Z., additional, Sedmera, D., additional, Smart, N., additional, Rossdeutsch, A., additional, Dube, K. N., additional, Riegler, J., additional, Price, A. N., additional, Taylor, A., additional, Muthurangu, V., additional, Turner, M., additional, Lythgoe, M. F., additional, Riley, P. R., additional, Kryvorot, S., additional, Vladimirskaya, T., additional, Shved, I., additional, Schwarzl, M., additional, Seiler, S., additional, Huber, S., additional, Steendijk, P., additional, Maechler, H., additional, Truschnig-Wilders, M., additional, Pieske, B., additional, Post, H., additional, Caprio, C., additional, Baldini, A., additional, Chiavacci, E., additional, Dolfi, L., additional, Verduci, L., additional, Meghini, F., additional, Cremisi, F., additional, Pitto, L., additional, Kuan, T.-C., additional, Chen, M.-C., additional, Yang, T.-H., additional, Wu, W.-T., additional, Lin, C. S., additional, Rai, H., additional, Kumar, S., additional, Sharma, A. K., additional, Mastana, S., additional, Kapoor, A., additional, Pandey, C. M., additional, Agrawal, S., additional, Sinha, N., additional, Orlowska-Baranowska, E. H., additional, Placha, G., additional, Gora, J., additional, Baranowski, R., additional, Abramczuk, E., additional, Hryniewiecki, T., additional, Gaciong, Z., additional, Verschuren, J. J. W., additional, Wessels, J. A. M., additional, Trompet, S., additional, Stott, D. J., additional, Sattar, N., additional, Buckley, B., additional, Guchelaar, H. J., additional, Jukema, J. W., additional, Gharanei, M., additional, Hussain, A., additional, Mee, C. J., additional, Maddock, H. L., additional, Wijnen, W. J., additional, Van Den Oever, S., additional, Van Der Made, I., additional, Hiller, M., additional, Tijsen, A. J., additional, Pinto, Y. M., additional, Creemers, E. E., additional, Nikulina, S. U. Y., additional, Chernova, A., additional, Petry, A., additional, Rzymski, T., additional, Kracun, D., additional, Riess, F., additional, Pike, L., additional, Harris, A. L., additional, Gorlach, A., additional, Katare, R., additional, Oikawa, A., additional, Riu, F., additional, Beltrami, A. P., additional, Cesseli, D., additional, Emanueli, C., additional, Madeddu, P., additional, Zaglia, T., additional, Milan, G., additional, Franzoso, M., additional, Pesce, P., additional, Sarais, C., additional, Sandri, M., additional, Mongillo, M., additional, Butler, T. J., additional, Seymour, A.-M. L., additional, Ashford, D., additional, Jaffre, F., additional, Bussen, M., additional, Flohrschutz, I., additional, Martin, G. R., additional, Engelhardt, S., additional, Kararigas, G., additional, Nguyen, B. T., additional, Jarry, H., additional, Regitz-Zagrosek, V., additional, Van Bilsen, M., additional, Daniels, A., additional, Munts, C., additional, Janssen, B. J. A., additional, Van Der Vusse, G. J., additional, Van Nieuwenhoven, F. A., additional, Montalvo, C., additional, Villar, A. V., additional, Merino, D., additional, Garcia, R., additional, Llano, M., additional, Ares, M., additional, Hurle, M. A., additional, Nistal, J. F., additional, Dembinska-Kiec, A., additional, Beata Kiec-Wilk, B. K. W., additional, Anna Polus, A. P., additional, Urszula Czech, U. C., additional, Tatiana Konovaleva, T. K., additional, Gerd Schmitz, G. S., additional, Bertrand, L., additional, Balteau, M., additional, Timmermans, A., additional, Viollet, B., additional, Sakamoto, K., additional, Feron, O., additional, Horman, S., additional, Vanoverschelde, J. L., additional, Beauloye, C., additional, De Meester, C., additional, Martinez, E., additional, Martin, R., additional, Miana, M., additional, Jurado, R., additional, Gomez-Hurtado, N., additional, Bartolome, M. V., additional, San Roman, J. A., additional, Lahera, V., additional, Nieto, M. L., additional, Cachofeiro, V., additional, Rochais, F., additional, Sturny, R., additional, Mesbah, K., additional, Miquerol, L., additional, Kelly, R. G., additional, Messaoudi, S., additional, Gravez, B., additional, Tarjus, A., additional, Pelloux, V., additional, Samuel, J. L., additional, Delcayre, C., additional, Launay, J. M., additional, Clement, K., additional, Farman, N., additional, Jaisser, F., additional, Hadyanto, L., additional, Castellani, C., additional, Vescovo, G., additional, Ravara, B., additional, Tavano, R., additional, Pozzobon, M., additional, De Coppi, P., additional, Papini, E., additional, Vettor, R., additional, Thiene, G., additional, Angelini, A., additional, Meloni, M., additional, Caporali, A., additional, Cesselli, D., additional, Fortunato, O., additional, Avolio, E., additional, Schindler, R., additional, Simrick, S., additional, Brand, T., additional, Smart, N. S., additional, Herman, A., additional, Roura Ferrer, S., additional, Rodriguez Bago, J., additional, Soler-Botija, C., additional, Pujal, J. M., additional, Galvez-Monton, C., additional, Prat-Vidal, C., additional, Llucia-Valldeperas, A., additional, Blanco, J., additional, Bayes-Genis, A., additional, Foldes, G., additional, Maxime, M., additional, Ali, N. N., additional, Schneider, M. D., additional, Harding, S. E., additional, Reni, C., additional, Mangialardi, G., additional, De Pauw, A., additional, Sekkali, B., additional, Friart, A., additional, Ding, H., additional, Graffeuil, A., additional, Catalucci, D., additional, Balligand, J. L., additional, Azibani, F., additional, Tournoux, F., additional, Schlossarek, S., additional, Polidano, E., additional, Fazal, L., additional, Merval, R., additional, Carrier, L., additional, Chatziantoniou, C., additional, Buyandelger, B., additional, Linke, W., additional, Zou, P., additional, Kostin, S., additional, Ku, C., additional, Felkin, L., additional, Birks, E., additional, Barton, P., additional, Sattler, M., additional, Knoell, R., additional, Schroder, K., additional, Benkhoff, S., additional, Shimokawa, H., additional, Grisk, O., additional, Brandes, R. P., additional, Parepa, I. R., additional, Mazilu, L., additional, Suceveanu, A. I., additional, Suceveanu, A., additional, Rusali, L., additional, Cojocaru, L., additional, Matei, L., additional, Toringhibel, M., additional, Craiu, E., additional, Pires, A. L., additional, Pinho, M., additional, Pinho, S., additional, Sena, C., additional, Seica, R., additional, Leite-Moreira, A., additional, Dabroi, F., additional, Schiaffino, S., additional, Kiseleva, E., additional, Krukov, N., additional, Nikitin, O., additional, Ardatova, L., additional, Mourouzis, I., additional, Pantos, C., additional, Kokkinos, A. D., additional, Cokkinos, D. V., additional, Scoditti, E., additional, Massaro, M., additional, Carluccio, M. A., additional, Pellegrino, M., additional, Calabriso, N., additional, Gastaldelli, A., additional, Storelli, C., additional, De Caterina, R., additional, Lindner, D., additional, Zietsch, C., additional, Schultheiss, H.-P., additional, Tschope, C., additional, Westermann, D., additional, Everaert, B. R., additional, Nijenhuis, V. J., additional, Reith, F. C. M., additional, Hoymans, V. Y., additional, Timmermans, J. P., additional, Vrints, C. J., additional, Simova, I., additional, Mateev, H., additional, Katova, T., additional, Haralanov, L., additional, Dimitrov, N., additional, Mironov, N., additional, Golitsyn, S. P., additional, Sokolov, S. F., additional, Yuricheva, Y. U. A., additional, Maikov, E. B., additional, Shlevkov, N. B., additional, Rosenstraukh, L. V., additional, Chazov, E. I., additional, Radosinska, J., additional, Knezl, V., additional, Benova, T., additional, Slezak, J., additional, Urban, L., additional, Tribulova, N., additional, Virag, L., additional, Kristof, A., additional, Kohajda, Z. S., additional, Szel, T., additional, Husti, Z., additional, Baczko, I., additional, Jost, N., additional, Varro, A., additional, Sarusi, A., additional, Farkas, A. S., additional, Orosz, S. Z., additional, Forster, T., additional, Farkas, A., additional, Zakhrabova-Zwiauer, O. M., additional, Hardziyenka, M., additional, Nieuwland, R., additional, Tan, H. L., additional, Raaijmakers, A. J. A., additional, Bourgonje, V. J. A., additional, Kok, G. J. M., additional, Van Veen, A. A. B., additional, Anderson, M. E., additional, Vos, M. A., additional, Bierhuizen, M. F. A., additional, Benes, J., additional, Sebestova, B., additional, Ghouri, I. A., additional, Kemi, O. J., additional, Kelly, A., additional, Burton, F. L., additional, Smith, G. L., additional, Ozdemir, S., additional, Acsai, K., additional, Doisne, N., additional, Van Der Nagel, R., additional, Beekman, H. D. M., additional, Van Veen, T. A. B., additional, Sipido, K. R., additional, Antoons, G., additional, Harmer, S. C., additional, Mohal, J. S., additional, Kemp, D., additional, Tinker, A., additional, Beech, D., additional, Burley, D. S., additional, Cox, C. D., additional, Wann, K. T., additional, Baxter, G. 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G., additional, Turner, N. A., additional, Wood, I. C., additional, Porter, K. E., additional, Kogaki, S., additional, Ishida, H., additional, Nawa, N., additional, Takahashi, K., additional, Baden, H., additional, Ichimori, H., additional, Uchikawa, T., additional, Mihara, S., additional, Miura, K., additional, Ozono, K., additional, Lugano, R., additional, Padro, T., additional, Garcia-Arguinzonis, M., additional, Badimon, L., additional, Ferraro, F., additional, Viner, R., additional, Ho, J., additional, Cutler, D., additional, Matchkov, V., additional, Aalkjaer, C., additional, Krijnen, P. A. J., additional, Hahn, N. E., additional, Kholova, I., additional, Sipkens, J. A., additional, Van Alphen, F. P., additional, Simsek, S., additional, Schalkwijk, C. G., additional, Van Buul, J. D., additional, Van Hinsbergh, V. W. M., additional, Niessen, H. W. M., additional, Caro, C. G., additional, Seneviratne, A., additional, Monaco, C., additional, Hou, D., additional, Singh, J., additional, Gilson, P., additional, Burke, M. G., additional, Heraty, K. B., additional, Krams, R., additional, Coppola, G., additional, Albrecht, K., additional, Schgoer, W., additional, Wiedemann, D., additional, Bonaros, N., additional, Steger, C., additional, Theurl, M., additional, Stanzl, U., additional, Kirchmair, R., additional, Amadesi, S., additional, Spinetti, G., additional, Cangiano, E., additional, Valgimigli, M., additional, Miller, A. M., additional, Cardinali, A., additional, Vierlinger, K., additional, Pagano, G., additional, Liccardo, D., additional, Zincarelli, C., additional, Femminella, G. D., additional, Lymperopoulos, A., additional, De Lucia, C., additional, Koch, W. J., additional, Leosco, D., additional, Rengo, G., additional, Hinkel, R., additional, Husada, W., additional, Trenkwalder, T., additional, Di, Q., additional, Lee, S., additional, Petersen, B., additional, Bock-Marquette, I., additional, Niemann, H., additional, Di Maio, M., additional, Kupatt, C., additional, Nourian, M., additional, Yassin, Z., additional, Kelishadi, R., additional, Memarian, S. H., additional, Heidari, A., additional, Leuner, A., additional, Poitz, D. M., additional, Brunssen, C., additional, Ravens, U., additional, Strasser, R. H., additional, Morawietz, H., additional, Vogt, F., additional, Grahl, A., additional, Flege, C., additional, Marx, N., additional, Borinski, M., additional, De Geest, B., additional, Jacobs, F., additional, Muthuramu, I., additional, Gordts, S. C., additional, Van Craeyveld, E., additional, Herijgers, P., additional, Weinert, S., additional, Medunjanin, S., additional, Herold, J., additional, Schmeisser, A., additional, Braun-Dullaeus, R. C., additional, Wagner, A. H., additional, Moeller, K., additional, Adolph, O., additional, Schwarz, M., additional, Schwale, C., additional, Bruehl, C., additional, Nobiling, R., additional, Wieland, T., additional, Schneider, S. W., additional, Hecker, M., additional, Cross, A., additional, Strom, A., additional, Cole, J., additional, Goddard, M., additional, Hultgardh-Nilsson, A., additional, Nilsson, J., additional, Mauri, C., additional, Mitkovskaya, N. P., additional, Kurak, T. A., additional, Oganova, E. G., additional, Shkrebneva, E. I., additional, Kot, Z. H. N., additional, Statkevich, T. V., additional, Molica, F., additional, Burger, F., additional, Matter, C. M., additional, Thomas, A., additional, Staub, C., additional, Zimmer, A., additional, Cravatt, B., additional, Pacher, P., additional, Steffens, S., additional, Blanco, R., additional, Sarmiento, R., additional, Parisi, C., additional, Fandino, S., additional, Blanco, F., additional, Gigena, G., additional, Szarfer, J., additional, Rodriguez, A., additional, Garcia Escudero, A., additional, Riccitelli, M. A., additional, Wantha, S., additional, Simsekyilmaz, S., additional, Megens, R. T., additional, Van Zandvoort, M. A., additional, Liehn, E., additional, Zernecke, A., additional, Klee, D., additional, Weber, C., additional, Soehnlein, O., additional, Lima, L. M., additional, Carvalho, M. G., additional, Gomes, K. B., additional, Santos, I. R., additional, Sousa, M. O., additional, Morais, C. A. S., additional, Oliveira, S. H. V., additional, Gomes, I. F., additional, Brandao, F. C., additional, Lamego, M. R. A., additional, Fornai, L., additional, Kiss, A., additional, Giskes, F., additional, Eijkel, G., additional, Fedrigo, M., additional, Valente, M. L., additional, Heeren, R. M. A., additional, Grdinic, A., additional, Vojvodic, D., additional, Djukanovic, N., additional, Grdinic, A. G., additional, Obradovic, S., additional, Majstorovic, I., additional, Rusovic, S., additional, Vucinic, Z., additional, Tavciovski, D., additional, Ostojic, M., additional, Lai, S.-C., additional, Chen, M.-Y., additional, Wu, H.-T., additional, Gouweleeuw, L., additional, Oberdorf-Maass, S. U., additional, De Boer, R. A., additional, Van Gilst, W. H., additional, Maass, A. H., additional, Van Gelder, I. C., additional, Benard, L., additional, Li, C., additional, Warren, D., additional, Shanahan, C. M., additional, Zhang, Q. P., additional, Bye, A., additional, Vettukattil, R., additional, Aspenes, S. T., additional, Giskeodegaard, G., additional, Gribbestad, I. S., additional, Wisloff, U., additional, Bathen, T. F., additional, Cubedo, J., additional, Alonso, R., additional, Mata, P., additional, Ivic, I., additional, Vamos, Z., additional, Cseplo, P., additional, Kosa, D., additional, Torok, O., additional, Hamar, J., additional, Koller, A., additional, Norita, K., additional, De Noronha, S. V., additional, Sheppard, M. N., additional, Amat-Roldan, I., additional, Iruretagoiena, I., additional, Psilodimitrakopoulos, S., additional, Crispi, F., additional, Artigas, D., additional, Loza-Alvarez, P., additional, Harrison, J. C., additional, Smart, S. D., additional, Besely, E. H., additional, Kelly, J. R., additional, Yao, Y., additional, Sammut, I. A., additional, Hoepfner, M., additional, Kuzyniak, W., additional, Sekhosana, E., additional, Hoffmann, B., additional, Litwinski, C., additional, Pries, A., additional, Ermilov, E., additional, Fontoura, D., additional, Lourenco, A. P., additional, Vasques-Novoa, F., additional, Pinto, J. 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Y., additional, Lubberink, M., additional, Knaapen, P., additional, Raijmakers, P., additional, Lammertsma, A. A., additional, Marcus, J. T., additional, Westerhof, N., additional, Van Der Laarse, W. J., additional, Vonk-Noordegraaf, A., additional, Steinbronn, N., additional, Koch, E., additional, Steiner, G., additional, Berezin, A., additional, Lisovaya, O. A., additional, Soldatova, A. M., additional, Kuznetcov, V. A., additional, Yenina, T. N., additional, Rychkov, A. Y. U., additional, Shebeko, P. V., additional, Altara, R., additional, Hessel, M. H. M., additional, Hermans, J. J. R., additional, Blankesteijn, W. M., additional, Berezina, T. A., additional, Seden, V., additional, Bonanad, C., additional, Nunez, J., additional, Navarro, D., additional, Chilet, M. F., additional, Sanchis, F., additional, Bodi, V., additional, Minana, G., additional, Chaustre, F., additional, Forteza, M. J., additional, Llacer, A., additional, Galasso, G., additional, Ferrara, N., additional, Akhmedov, A., additional, Klingenberg, R., additional, Brokopp, C., additional, Hof, D., additional, Zoller, S., additional, Corti, R., additional, Gay, S., additional, Von Eckardstein, A., additional, Hoerstrup, S. P., additional, Luescher, T. F., additional, Heijman, J., additional, Zaza, A., additional, Johnson, D. M., additional, Rudy, Y., additional, Peeters, R. L. M., additional, Volders, P. G. A., additional, Westra, R. L., additional, Fujita, S., additional, Okamoto, R., additional, Taniguchi, M., additional, Konishi, K., additional, Goto, I., additional, Sugimoto, K., additional, Nakamura, M., additional, Shiraki, K., additional, Buechler, C., additional, and Ito, M., additional
- Published
- 2012
- Full Text
- View/download PDF
23. The Biogeochemistry of Gold
- Author
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Southam, G., primary, Lengke, M. F., additional, Fairbrother, L., additional, and Reith, F., additional
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- 2009
- Full Text
- View/download PDF
24. Assessment of Bacterial Communities in Auriferous and Non-Auriferous Soils Using Genetic and Functional Fingerprinting
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Reith, F., primary and Rogers, S. L., additional
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- 2008
- Full Text
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25. Bioaccumulation and secondary gold nugget formation
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Reith, F., primary and Rogers, S.L., additional
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- 2006
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26. Bacillus cereus, gold and associated elements in soil and other regolith samples from Tomakin Park Gold Mine in southeastern New South Wales, Australia
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Reith, F., primary, McPhail, D.C., additional, and Christy, A.G., additional
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- 2005
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27. Zur experimentellen Analyse der Primitiventwicklung bei Insekten
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Reith, F.
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- 1931
- Full Text
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28. Relevance of microorganisms for the formation of and the exploration for gold deposits in the Australian regolith.
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Reith F. and Reith F.
- Abstract
Regolith materials from three Australian gold sites were studied to assess the components of the biochemical cycle in the weathering environment. Selective sequential leaching showed that gold was solubilised and redistributed during weathering and soil formation. Microcosm experiments showed that heterotrophic bacteria and fungi appear to dominate gold dissolution; in carbon-limited environments iron- and sulphur-oxidising bacteria appear to break down the sulphide materials. Transport in the soil was by water movement in the vadose zone and absorption by roots, plant material containing up to 110 ppb of gold. Gold appeared to precipitate and accumulate in some soils. Bacillus cereus spore counts, which can be conducted in the field, increased with increasing concentrations of gold and may be a direct indicator for gold exploration, while microoganisms which accumulate large quantities of gold could be used in gold processing., Regolith materials from three Australian gold sites were studied to assess the components of the biochemical cycle in the weathering environment. Selective sequential leaching showed that gold was solubilised and redistributed during weathering and soil formation. Microcosm experiments showed that heterotrophic bacteria and fungi appear to dominate gold dissolution; in carbon-limited environments iron- and sulphur-oxidising bacteria appear to break down the sulphide materials. Transport in the soil was by water movement in the vadose zone and absorption by roots, plant material containing up to 110 ppb of gold. Gold appeared to precipitate and accumulate in some soils. Bacillus cereus spore counts, which can be conducted in the field, increased with increasing concentrations of gold and may be a direct indicator for gold exploration, while microoganisms which accumulate large quantities of gold could be used in gold processing.
29. The biogeochemistry of gold.
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Southam G., Fairbrother L., Lengke M.F., Reith F., Southam G., Fairbrother L., Lengke M.F., and Reith F.
- Abstract
The biosphere catalyses a variety of biogeochemical reactions which can transform gold. Microbial weathering contributes to mobilisation by releasing elemental Au trapped within minerals and by solubilising Au through oxidation-promoting complexing. Subsequent microbial destabilisation of the Au complexes, together with bio-precipitation and bio-mineralisation, can immobilise Au, completing the cycle. Secondary Au can occur as colloidal particles, crystalline Au and bacteriomorphic structures., The biosphere catalyses a variety of biogeochemical reactions which can transform gold. Microbial weathering contributes to mobilisation by releasing elemental Au trapped within minerals and by solubilising Au through oxidation-promoting complexing. Subsequent microbial destabilisation of the Au complexes, together with bio-precipitation and bio-mineralisation, can immobilise Au, completing the cycle. Secondary Au can occur as colloidal particles, crystalline Au and bacteriomorphic structures.
30. Biological role in the transformation of platinum-group mineral grains.
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Reith F., Ball A.S., Bottrill R., Brugger J., Etschmann B., Kilburn M., Oberthur T., Shar S.S., Southam G., Ta C., Zammit C.M., Reith F., Ball A.S., Bottrill R., Brugger J., Etschmann B., Kilburn M., Oberthur T., Shar S.S., Southam G., Ta C., and Zammit C.M.
- Abstract
Microorganisms influence the mobility of platinum-group elements in mineral grains collected from Brazil, Australia and Colombia. Scanning electron microscopy showed biofilms containing abundant Pt-group element nanoparticles and crystalline aggregates and were dominated by Proteobacteria, many of which were closely related to known metal-resistant species. Some Pt-group mineral grains contained C, N, S, Se and I, suggesting the grains may be biogenic in origin. Molecular analysis showed that Brazilian Pt-Pd grains hosted specific bacterial communities different in composition from gold-grain communities or communities in surrounding soils and sediments. Nano-phase metallic Pt accumulated when a metallophillic bacterium was incubated with a percolating Pt-containing medium suggesting that biofilms can cause the precipitation of mobile Pt complexes and may play an important role for Pt-group element dispersion and reconcentration in surface environments., Microorganisms influence the mobility of platinum-group elements in mineral grains collected from Brazil, Australia and Colombia. Scanning electron microscopy showed biofilms containing abundant Pt-group element nanoparticles and crystalline aggregates and were dominated by Proteobacteria, many of which were closely related to known metal-resistant species. Some Pt-group mineral grains contained C, N, S, Se and I, suggesting the grains may be biogenic in origin. Molecular analysis showed that Brazilian Pt-Pd grains hosted specific bacterial communities different in composition from gold-grain communities or communities in surrounding soils and sediments. Nano-phase metallic Pt accumulated when a metallophillic bacterium was incubated with a percolating Pt-containing medium suggesting that biofilms can cause the precipitation of mobile Pt complexes and may play an important role for Pt-group element dispersion and reconcentration in surface environments.
31. Ore petrography using megapixel X-ray imaging: rapid insights into element distribution and mobilisation in complex Pt and U-Ge-Cu ores.
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Li Kan, Brugger J., Etschmann B., Hooker A., Howard D., Kirkham R., Ngothai Y., Pring A., Rae N., Reith F., Rosa D.R.N., Ryan C.G., Zammit C., Li Kan, Brugger J., Etschmann B., Hooker A., Howard D., Kirkham R., Ngothai Y., Pring A., Rae N., Reith F., Rosa D.R.N., Ryan C.G., and Zammit C.
- Abstract
Based on the imaging of six samples representative of different commodities (Pt, U, Cu, Ge) and different geological contexts (PGE deposit; sandstone-hosted U deposit; vein-type polymetallic hydrothermal deposit; iron oxide-copper-gold (IOCG) deposit), it is suggested that megapixel synchrotron-based X-ray fluorescence (MSXRF) can efficiently provide the information necessary to understand metal speciation in the context of thin section-scale textural complexity. Image analysis revealed a number of new results for the studied deposits, for example: the distribution of micrometre-sized Pt-rich grains and Ti mobility during the formation of schistosity at the Fifield Point prospect (New South Wales, Australia); the presence of Ge contained in organic matter and of Hg minerals associated within quartzite clasts in the Lake Frome U ores (South Australia); confirmation of the two-stage Ge enrichment in the Barrigão deposit, with demonstration of the presence of Ge in solid solution in the early chalcopyrite (Portuguese Iberian pyrite belt); and the enrichment of U during late dissolution-reprecipitation reactions in the bornite ores of the Moonta and Wallaroo IOCG deposits (South Australia). These results illustrate that MSXRF is a powerful technique for locating nano- to microparticles of precious metals (Pt) and trace contaminants (e.g. Hg) that form distinct (micro-)minerals. In addition, it is a powerful tool for understanding commodities with relatively low ore grades (100-1 000 ppm) and complex distribution, such as U, Ge., Based on the imaging of six samples representative of different commodities (Pt, U, Cu, Ge) and different geological contexts (PGE deposit; sandstone-hosted U deposit; vein-type polymetallic hydrothermal deposit; iron oxide-copper-gold (IOCG) deposit), it is suggested that megapixel synchrotron-based X-ray fluorescence (MSXRF) can efficiently provide the information necessary to understand metal speciation in the context of thin section-scale textural complexity. Image analysis revealed a number of new results for the studied deposits, for example: the distribution of micrometre-sized Pt-rich grains and Ti mobility during the formation of schistosity at the Fifield Point prospect (New South Wales, Australia); the presence of Ge contained in organic matter and of Hg minerals associated within quartzite clasts in the Lake Frome U ores (South Australia); confirmation of the two-stage Ge enrichment in the Barrigão deposit, with demonstration of the presence of Ge in solid solution in the early chalcopyrite (Portuguese Iberian pyrite belt); and the enrichment of U during late dissolution-reprecipitation reactions in the bornite ores of the Moonta and Wallaroo IOCG deposits (South Australia). These results illustrate that MSXRF is a powerful technique for locating nano- to microparticles of precious metals (Pt) and trace contaminants (e.g. Hg) that form distinct (micro-)minerals. In addition, it is a powerful tool for understanding commodities with relatively low ore grades (100-1 000 ppm) and complex distribution, such as U, Ge.
32. Potential utilisation of microorganisms in gold processing: a review.
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Reith F., Brugger J., McPhail D.C., Rogers S.L., Zammit C.M., Reith F., Brugger J., McPhail D.C., Rogers S.L., and Zammit C.M.
- Abstract
Using iron- and sulphur-oxidising bacteria to catalyse the breakdown of sulphides that host the gold is an important biological method for the pretreatment of refractory gold ores. Following this biological treatment, a combination of chemical and physical methods is used for leaching (such as the cyanide process) and concentration (such as carbon in pulp or electrowinning) of the gold. Although these methods are well accepted by industry, they harbour limitations in the processing of low-grade refractory ores and regulatory agency/public acceptance of cyanide use. Thus, it is beneficial for industry to develop environmentally friendly, as well as cost-efficient, leaching and concentration techniques that are based on micro-organisms. This may soon be possible by adapting the results of recent multidisciplinary research, which has shown that micro-organisms are capable of driving a biogeochemical cycle of gold dispersion, transport and re-concentration in the supergene environment. The indigenous microbiota in biologically active soil microcosms from a number of Australian sites are capable of solubilising up to 80 wt% of the gold contained in soils and deeper regolith materials. Studies using molecular microbial techniques have shown that a metallophilic bacterium, Cupriavidus metallidurans, is present in biofilms on gold grains from a number of Australian sites. Cupriavidus metallidurans is capable of actively accumulating gold from solution and therefore contributes to the formation of secondary gold grains and nuggets. Identifying the biochemical and physiological pathways that lead to the dispersion and accumulation of gold in regolith and quantifying the reaction kinetics of these processes may thus lead to the development of industrial bio-processing capacities for gold-containing ores. (Authors.), Using iron- and sulphur-oxidising bacteria to catalyse the breakdown of sulphides that host the gold is an important biological method for the pretreatment of refractory gold ores. Following this biological treatment, a combination of chemical and physical methods is used for leaching (such as the cyanide process) and concentration (such as carbon in pulp or electrowinning) of the gold. Although these methods are well accepted by industry, they harbour limitations in the processing of low-grade refractory ores and regulatory agency/public acceptance of cyanide use. Thus, it is beneficial for industry to develop environmentally friendly, as well as cost-efficient, leaching and concentration techniques that are based on micro-organisms. This may soon be possible by adapting the results of recent multidisciplinary research, which has shown that micro-organisms are capable of driving a biogeochemical cycle of gold dispersion, transport and re-concentration in the supergene environment. The indigenous microbiota in biologically active soil microcosms from a number of Australian sites are capable of solubilising up to 80 wt% of the gold contained in soils and deeper regolith materials. Studies using molecular microbial techniques have shown that a metallophilic bacterium, Cupriavidus metallidurans, is present in biofilms on gold grains from a number of Australian sites. Cupriavidus metallidurans is capable of actively accumulating gold from solution and therefore contributes to the formation of secondary gold grains and nuggets. Identifying the biochemical and physiological pathways that lead to the dispersion and accumulation of gold in regolith and quantifying the reaction kinetics of these processes may thus lead to the development of industrial bio-processing capacities for gold-containing ores. (Authors.)
33. Golden biotechnologies: the future of gold mining.
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Zammit C., Brugger J., Cook N., Reith F., Zammit C., Brugger J., Cook N., and Reith F.
- Abstract
The development is discussed of biotechnology techniques based on the capabilities of certain microorganisms for use in Au exploration, processing and mine site remediation. State-of-the-art microscopic and molecular techniques have been used to show the major part played by microorganisms in the movement of Au within the environment. The composition of microbial communities has been linked to the presence of Au and its pathfinder elements using a molecular technique called denaturing gradient gel electrophoresis, and the microarrays technique has been used to show a correlation between the composition of microorganisms and metals in a mining environment. Another possible application of microbial systems for use in Au exploration involves biosensors, hand-held analytical devices based on biological components which are developed to detect specific compounds. Biosensor devices may also aid in mineral processing for the real-time in-line analysis of specific mineral components of ores. Molecular techniques such as transcriptomics have been used to identify genes from Cupriavidus metallidurans Strain 34 and Salmonella typhimurium and are being investigated for Au exploration. The use of microorganisms in Au processing is an established technique, and the BIOX process for the pre-processing of Au-containing sulphide ores in stirred tank bio-oxidation reactors has been a commercial success. The study of Au geo-microbiology has shown the possibility of using Au-targeting microorganisms to generate cyanide directly onto the surface of Au-containing minerals, reducing transport requirements and cyanide consumption and opening up the possibility of in situ Au leaching methods. Many plants, algae, fungi and bacteria have the ability to break down cyanide into non-toxic compounds which may present an alternative method for cyanide remediation., The development is discussed of biotechnology techniques based on the capabilities of certain microorganisms for use in Au exploration, processing and mine site remediation. State-of-the-art microscopic and molecular techniques have been used to show the major part played by microorganisms in the movement of Au within the environment. The composition of microbial communities has been linked to the presence of Au and its pathfinder elements using a molecular technique called denaturing gradient gel electrophoresis, and the microarrays technique has been used to show a correlation between the composition of microorganisms and metals in a mining environment. Another possible application of microbial systems for use in Au exploration involves biosensors, hand-held analytical devices based on biological components which are developed to detect specific compounds. Biosensor devices may also aid in mineral processing for the real-time in-line analysis of specific mineral components of ores. Molecular techniques such as transcriptomics have been used to identify genes from Cupriavidus metallidurans Strain 34 and Salmonella typhimurium and are being investigated for Au exploration. The use of microorganisms in Au processing is an established technique, and the BIOX process for the pre-processing of Au-containing sulphide ores in stirred tank bio-oxidation reactors has been a commercial success. The study of Au geo-microbiology has shown the possibility of using Au-targeting microorganisms to generate cyanide directly onto the surface of Au-containing minerals, reducing transport requirements and cyanide consumption and opening up the possibility of in situ Au leaching methods. Many plants, algae, fungi and bacteria have the ability to break down cyanide into non-toxic compounds which may present an alternative method for cyanide remediation.
34. Assessing microbiological surface expression over an overburden-covered VMS deposit.
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Wakelin S., Anand R.R., Macfarlane C., Noble R., Reith F., Rogers S., Wakelin S., Anand R.R., Macfarlane C., Noble R., Reith F., and Rogers S.
- Abstract
This study is a proof of concept in using multiple science disciplines (microbiology, geochemistry, regolith) to evaluate surface anomalies related to exploration. There are significant differences (P less than 0. 05) in elemental composition of soil, mulga foliage and litter collected from mineralised and from background samples. Concentrations of Cu and Zn were greater in plant material collected from the mineralised zone and were particularly elevated in the mulga litter. Microbial processes involved in litter decomposition under the mulga were investigated using BioLogEcoPlates, showing higher rates in soil adjacent to the base of the plant stems. The genetic structures of the soil bacterial, archaeal and fungal communities, determined using PCR-DGGE (polymerase chain-reaction denaturing gradient gel electrophoresis) fingerprinting of ribosomal RNA genes, were also different over the burried mineralisation, with changes in the bacterial community being most pronounced. It is proposed that the formation of the surficial soil anomaly is a product of plant concentration of elements via scavenging from the surrounding regolith profile followed by the microbially-mediated release of metals to the soil surface following plant litter fall. Results have also shown that biogeochemical approaches to mineral exploration are viable in arid ecosystems witl low net primary productivity., This study is a proof of concept in using multiple science disciplines (microbiology, geochemistry, regolith) to evaluate surface anomalies related to exploration. There are significant differences (P less than 0. 05) in elemental composition of soil, mulga foliage and litter collected from mineralised and from background samples. Concentrations of Cu and Zn were greater in plant material collected from the mineralised zone and were particularly elevated in the mulga litter. Microbial processes involved in litter decomposition under the mulga were investigated using BioLogEcoPlates, showing higher rates in soil adjacent to the base of the plant stems. The genetic structures of the soil bacterial, archaeal and fungal communities, determined using PCR-DGGE (polymerase chain-reaction denaturing gradient gel electrophoresis) fingerprinting of ribosomal RNA genes, were also different over the burried mineralisation, with changes in the bacterial community being most pronounced. It is proposed that the formation of the surficial soil anomaly is a product of plant concentration of elements via scavenging from the surrounding regolith profile followed by the microbially-mediated release of metals to the soil surface following plant litter fall. Results have also shown that biogeochemical approaches to mineral exploration are viable in arid ecosystems witl low net primary productivity.
35. Under pressure - A historical vignette on surgical timing in traumatic spinal cord injury.
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Ter Wengel PV, Reith F, Adegeest CY, Fehlings MG, Kwon BK, Vandertop WP, and Öner CF
- Abstract
Introduction: It was not even a century ago when a spinal cord injury (SCI) would inevitably result in a fatal outcome, particularly for those with complete SCI. Throughout history, there have been extensive endeavours to change the prospects for SCI patients by performing surgery, even though many believed that there was no way to alter the catastrophic course of SCI. To this day, the debate regarding the efficacy of surgery in improving the neurological outcome for SCI patients persists, along with discussions about the timing of surgical intervention., Research Question: How have the historical surgical results shaped our perspective on the surgical treatment of SCI?, Material and Methods: Narrative literature review., Results: Throughout history there have been multiple surgical attempts to alter the course of SCI, with conflicting results. While studies suggest a potential link between timing of surgery and neurological recovery, the exact impact of immediate surgery on individual cases remains ambiguous. It is becoming more evident that, alongside surgical intervention, factors specific to both the patient and their surgical treatment will significantly influence neurological recovery., Conclusion: Although a growing number of studies indicates a potential correlation of surgical timing and neurological outcome, the precise influence of urgent surgery on an individual basis remains uncertain. It is increasingly apparent that, despite surgery, patient- and treatment-specific factors will also play a role in determining the neurological outcome. Notably, these very factors have influenced the results in previous studies and our views concerning surgical timing., Competing Interests: None., (© 2024 The Authors. Published by Elsevier B.V. on behalf of EUROSPINE, the Spine Society of Europe, EANS, the European Association of Neurosurgical Societies.)
- Published
- 2024
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36. From biomolecules to biogeochemistry: Exploring the interaction of an indigenous bacterium with gold.
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Sanyal SK, Pukala T, Mittal P, Reith F, Brugger J, Etschmann B, and Shuster J
- Subjects
- Copper toxicity, Proteomics, Bacteria, Gold toxicity, Gold chemistry, Metal Nanoparticles toxicity, Metal Nanoparticles chemistry
- Abstract
Specialised microbial communities colonise the surface of gold particles in soils/sediments, and catalyse gold dissolution and re-precipitation, thereby contributing to the environmental mobility and toxicity of this 'inert' precious metal. We assessed the proteomic and physiological response of Serratia proteamaculans, the first metabolically active bacterium enriched and isolated directly from natural gold particles, when exposed to toxic levels of soluble Au
3+ (10 μM). The results were compared to a metal-free blank, and to cultures exposed to similarly toxic levels of soluble Cu2+ (0.1 mM); Cu was chosen for comparison because it is closely associated with Au in nature due to similar geochemical properties. A total of 273 proteins were detected from the cells that experienced the oxidative effects of soluble Au, of which 139 (51%) were upregulated with either sole expression (31%) or had synthesis levels greater than the Au-free control (20%). The majority (54%) of upregulated proteins were functionally different from up-regulated proteins in the bacteria-copper treatment. These proteins were related to broad functions involving metabolism and biogenesis, followed by cellular process and signalling, indicating significant specificity for Au. This proteomic study revealed that the bacterium upregulates the synthesis of various proteins related to oxidative stress response (e.g., Monothiol-Glutaredoxin, Thiol Peroxidase, etc.) and cellular damage repair, which leads to the formation of metallic gold nanoparticles less toxic than ionic gold. Therefore, indigenous bacteria may mediate the toxicity of Au through two different yet simultaneous processes: i) repairing cellular components by replenishing damaged proteins and ii) neutralising reactive oxygen species (ROS) by up-regulating the synthesis of antioxidants. By connecting the fields of molecular bacteriology and environmental biogeochemistry, this study is the first step towards the development of biotechnologies based on indigenous bacteria applied to gold bio-recovery and bioremediation of contaminated environments., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Author(s). Published by Elsevier Ltd.. All rights reserved.)- Published
- 2023
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37. Usefulness of the total and differential somatic cell count based udder health group concept for evaluating herd management practices and udder health in dairy herds.
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Schwarz D, Kleinhans S, Witzel G, Stückler P, Reith F, and Danø S
- Subjects
- Animals, Cattle, Female, Mammary Glands, Animal, Milk, Anti-Bacterial Agents therapeutic use, Cell Count veterinary, Cell Count methods, Dairying methods, Lactation, Mastitis, Bovine diagnosis, Mastitis, Bovine prevention & control, Mastitis, Bovine drug therapy, Cattle Diseases
- Abstract
Subclinical mastitis and associated economic losses are a steady challenge in the dairy industry. The combination of the well-established somatic cell count (SCC) parameter and the new differential SCC (DSCC) opens up the possibility to categorise cows into four different udder health groups (UHG) based on results from a single milk recording/dairy herd improvement (DHI) test: UHG A: healthy/normal, ≤ 200,000 cells/mL and DSCC ≤ 65 %; B: suspicious, ≤ 200,000 cells/mL and DSCC > 65 %; C: (subclinical) mastitis, > 200,000 cells/mL and DSCC > 65 %; D: chronic/persistent mastitis, > 200,000 cells/mL and DSCC ≤ 65 %. The objectives of this study were to investigate 1) herd management practises among herds in different UHG categories and 2) herd performance parameters depending on the proportion of cows in UHG A. A total number of 41 herds in Styria, Austria, and Thuringia, Germany, were visited and interviewed for the first part of the study. The herds were categorised into 3 UHG categories depending on the proportion of cows in UHG A: I = >65 %; II = 55-65 %; and III = <55 %. Those with good udder health and best herd performance (+9 % milk yields, +11 % longevity, -35 % antibiotic treatments) applied distinct preventive measures, in particular excellent cubicle management and early antibiotic treatment (P < 0.05 each). However, preventive measures were applied to a lower extent in other herds. Herds were categorised differently using the UHG concept compared to SCC alone as the UHG-based categorisation allowed to clearer distinguish herds with medium-good from those with good udder health. A total number of 129,812 regular milk recording/DHI test day results of 890 Austrian and 183 German herds was used for the second part of the study. Results revealed a trend of increasing daily production as proportions of cows in UHG A increase. In conclusion, the UHG concept allowed clearer distinction of herds with good, medium-good, and poor udder health and could be used to promote practises leading to better animal health, less antibiotic treatments, and higher milk quality., Competing Interests: Declaration of Competing Interest The first and last authors of this publication are employed with FOSS Analytical A/S, the entity manufacturing and selling CombiFoss 7 DC (among other products). The other authors are working with milk testing laboratories and milk recording organisations and have no conflict of interest., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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38. Microbial degradation products of lurasidone and their significance in postmortem toxicology.
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Castle JW, Butzbach DM, Walker GS, Lenehan CE, Reith F, Costello SP, and Kirkbride KP
- Subjects
- Humans, Risperidone, Retrospective Studies, Forensic Toxicology, Lurasidone Hydrochloride, Tandem Mass Spectrometry
- Abstract
Recent research reported that lurasidone degrades in unpreserved ante-mortem human whole blood inoculated with microorganisms known to dominate postmortem blood specimens. In vitro degradation occurred at a similar rate to risperidone, known to degrade in authentic postmortem specimens until below analytical detection limits. To identify the lurasidone degradation products formed, an Agilent 6520 liquid chromatograph quadrupole-time-of-flight mass spectrometer (LC-QTOF-MS) operating in auto-MS/MS mode was used. Numerous degradation products not previously reported in prior in vitro or in vivo pharmacokinetic studies or forced degradation studies were detected. Accurate mass data, mass fragmentation data, acetylation experiments, and a proposed mechanism of degradation analogous to risperidone supports initial identification of the major degradation product as N-debenzisothiazole-lurasidone (calculated m/z [M + H]
+ = 360.2646). A standard was unavailable to conclusively confirm this identification. Retrospective data analysis of postmortem cases involving lurasidone identified the presence of the major degradation product in four of six cases where lurasidone was also detected. This finding is significant for toxicology laboratories screening for this drug in postmortem casework. The major postmortem lurasidone degradation product has consequently been added to the LC-QTOF-MS drug screen at Forensic Science SA (FSSA) to indicate postmortem lurasidone degradation in authentic postmortem blood specimens and as a marker of lurasidone administration in the event lurasidone is degraded to concentrations below detection limits., (© 2023 The Authors. Drug Testing and Analysis published by John Wiley & Sons Ltd.)- Published
- 2023
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39. In vitro degradation of ziprasidone in human whole blood.
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Castle JW, Butzbach DM, Walker GS, Lenehan CE, Reith F, Costello SP, and Kirkbride KP
- Subjects
- Humans, Retrospective Studies, Chromatography, Liquid methods, Chromatography, High Pressure Liquid methods, Tandem Mass Spectrometry methods, Piperazines
- Abstract
A systematic study was performed into the degradation of ziprasidone in simulated postmortem blood. Fifteen potential degradation products not previously reported in the literature were observed. Four resulted from degradation in human blood, whereas the remaining products resulted from reaction with solvents: four from alkaline degradation, four from reaction with acetaldehyde, and three from reaction with acetone. To identify possible degradation products, a liquid chromatograph-diode array detector (LC-DAD) and liquid chromatograph quadrupole-time-of-flight mass spectrometer (LC-QTOF-MS) operating in auto-MS/MS mode were used. It was indicated from red-shifted UV-Vis spectra, accurate mass data, mass fragmentation data, and a deuteration experiment that the site of ziprasidone degradation, in the in vitro blood experiments, was the methylene carbon of the oxindole moiety. The major in vitro blood degradation products were proposed to be E/Z isomers of 3-ethylidene-ziprasidone. Further, another in vitro degradation product in microbially inoculated blood specimens was proposed to be 3-ethyl-ziprasidone. 3-Ethylidene-ziprasidone was hypothesized to form from the reaction of ziprasidone with acetaldehyde derived from the ethanol used to spike ziprasidone into the in vitro blood experiments. Data from two postmortem investigations were available for retrospective reanalysis. Attempts were made to detect degradation products of ziprasidone, but none were found., (© 2022 John Wiley & Sons Ltd.)
- Published
- 2023
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40. Investigations into the stability of 17 psychoactive drugs in a "simulated postmortem blood" model.
- Author
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Castle JW, Butzbach DM, Reith F, Walker GS, Lenehan CE, Costello SP, and Kirkbride KP
- Subjects
- Chromatography, Liquid, Drug Stability, Forensic Toxicology methods, Humans, Mass Spectrometry, RNA, Ribosomal, 16S, Antipsychotic Agents, Psychotropic Drugs analysis
- Abstract
In the postmortem environment, some drugs and metabolites may degrade due to microbial activity, even forming degradation products that are not produced in humans. Consequently, underestimation or overestimation of perimortem drug concentrations or even false negatives are possible when analyzing postmortem specimens. Therefore, understanding whether medications may be susceptible to microbial degradation is critical in order to ensure that reliable detection and quantitation of drugs and their degradation products is achieved in toxicology screening methods. In this study, a "simulated postmortem blood" model constructed of antemortem human whole blood inoculated with a broad population of human fecal microorganisms was used to investigate the stability of 17 antidepressant and antipsychotic drugs. Microbial communities present in the experiments were determined to be relevant to postmortem blood microorganisms by 16S rRNA sequencing analyses. After 7 days of exposure to the community at 37°C, drug stability was evaluated using liquid chromatography coupled with diode array detection (LC-DAD) and with quadrupole time-of-flight mass spectrometry (LC-QTOF-MS). Most of the investigated drugs were found to be stable in inoculated samples and noninoculated controls. However, the 1,2-benzisothiazole antipsychotics, ziprasidone and lurasidone, were found to degrade at a rate comparable with the known labile control, risperidone. In longer experiments (7 to 12 months), where specimens were stored at -20°C, 4°C, and ambient temperature, N-dealkylation degradation products were detected for many of the drugs, with greater formation in specimens stored at -20°C than at 4°C., (© 2022 John Wiley & Sons, Ltd.)
- Published
- 2022
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41. Associations between different udder health groups defined based on a combination of total and differential somatic cell count and the future udder health status of dairy cows.
- Author
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Schwarz D, Kleinhans S, Reimann G, Stückler P, Reith F, Ilves K, Pedastsaar K, Yan L, Zhang Z, Lorenzana R, Barreal ML, and Fouz R
- Subjects
- Animals, Cattle, Cell Count veterinary, Dairying, Female, Lactation, Mammary Glands, Animal, Cattle Diseases epidemiology, Health Status, Milk cytology
- Abstract
Mastitis, in particular in its subclinical form, which may spread unnoticeable within a herd, continues to be a major challenge in the dairy industry. Somatic cell count (SCC) is a broadly used proxy for subclinical mastitis. The recently introduced Differential SCC (DSCC) representing the combined proportion of polymorphonuclear neutrophils and lymphocytes as a percentage of total SCC, can be used in combination with SCC to categorise cows into four different udder health groups (UHG) depending on actual test day results: UHG A: healthy/normal, ≤200,000 cells/mL and DSCC ≤65 %; B: suspicious, ≤200,000 cells/mL and DSCC >65 %; C: (subclinical) mastitis, >200,000 cells/mL and DSCC >65 %; D: chronic/persistent mastitis, >200,000 cells/mL and DSCC ≤65 %. The objective of our study was to investigate to what extent the UHG aid in determining different statuses of cows: I) leaving herd before next test day, II) having >200,000 cells/mL at the next test day, and III) having ≤200,000 cells/mL at the next 3 test days. Multivariable logistic regression analysis was used to evaluate these statuses based on routinely generated dairy herd improvement (DHI) data from Austria, China, Estonia, Germany, and Spain. Cows in groups C (odds ratio (OR): 2.13, 95 % confidence interval (CI): 1.95-2.34) and, particularly, D (OR: 3.91, 95 % CI: 3.31-4.62) were significantly more likely to leave herds compared to cows in group A. Late-lactating cows indicated the highest likelihood (OR: 16.03, 95 % CI: 14.44-17.81) to leave herds in our analysis. Interestingly, we found that cows in UHG B had significantly higher odds (OR: 2.77, 95 % CI: 2.58-2.98) to have >200,000 cells/mL at the next test day compared to cows in group A. As anticipated, cows in UHG B (OR: 0.40, 95 % CI: 0.38-0.42), C (OR: 0.08, 95 % CI: 0.07-0.09), and D (OR: 0.16, 95 % CI: 0.14-0.19) each were significantly less likely to have ≤200,000 cells/mL at the next 3 test days compared to cows in group A. Above described results are an example from Germany, but the same trends could be seen across all countries considered in our study. In conclusion, our findings illustrate that the UHG concept reveals additional valuable information about udder health and culling based a single test day over working with SCC only. Actual decisions in day-to-day farm management that could be taken were not investigated here and need to be further explored., (Copyright © 2021 FOSS Analytical A/S. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
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42. Long-term Impact of Gold and Platinum on Microbial Diversity in Australian Soils.
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Shar S, Reith F, Ball AS, and Shahsavari E
- Subjects
- Australia, Gold, Platinum, Soil, Soil Microbiology
- Abstract
The effects of platinum (Pt) and gold (Au) and on the soil bacterial community was evaluated in four different Australian soil types (acidic Burn Grounds (BGR), organic matter-rich Fox Lane, high silt/metal Pinpinio (PPN), and alkali Minnipa (MNP) spiked with either Pt or Au at 1, 25, and 100 mg kg
-1 using a next-generation sequencing approach (amplicon-based, MiSeq). Soil type and metal concentrations were observed to be key drivers of Pt and Au effects on soil microbial community structure. Different trends were therefore observed in the response of the bacterial community to Pt and Au amendments; however in each soil type, Pt and Au amendment caused a detectable shift in community structure that in most samples was positively correlated with increasing metal concentrations. New dominant groups were only observed in BGR and PPN soils at 100 mg kg-1 (Kazan-3B-28 and Verrucomicrobia groups (BGR, Pt) and Firmicutes and Caldithrix groups (PPN, Pt) and WS2 (BGR, Au). The effects of Pt on soil microbial diversity were largely adverse at 100 mg kg-1 and were pronounced in acidic, basic, and metal/silt-rich soils. However, this effect was concentration-related; Au appeared to be more toxic to soil bacterial communities than Pt at 25 mg kg-1 but Pt was more toxic at 100 mg kg-1 . More bacterial groups such as those belonging to Burkholderiales/Burkholderiaceae, Alicyclobacillaceae, Rubrobacteraceae, Cytophagaceae, Oxalobacteraceae were selectively enriched by Pt compared to Au (Sphingomonadaceae and Rhodospirillaceae) amendments irrespective of soil type. The research outcomes have important implications in the management (remediation) of Pt- and Au-contaminated environments.- Published
- 2021
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43. Investigation of dairy cow performance in different udder health groups defined based on a combination of somatic cell count and differential somatic cell count.
- Author
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Schwarz D, Kleinhans S, Reimann G, Stückler P, Reith F, Ilves K, Pedastsaar K, Yan L, Zhang Z, Valdivieso M, Barreal ML, and Fouz R
- Subjects
- Animals, Cattle, China, Europe, Female, Cell Count veterinary, Mammary Glands, Animal physiopathology, Mastitis, Bovine physiopathology
- Abstract
Mastitis is still the costliest disease in milk production. In particular, its subclinical form, which may spread unnoticeably within a herd, is a major challenge. Somatic cell count (SCC) is broadly used as an indicator for mastitis and thus the basis for udder health management programmes, e.g. through dairy herd improvement (DHI) testing. Since recently, differential somatic cell count (DSCC, representing the combined proportion of polymorphonuclear neutrophils and lymphocytes as a percentage of total SCC) is available in addition. Our study was aimed to investigate dairy cow performance in four newly defined udder health groups (UHG) based on SCC and DSCC results from DHI testing. In total, 961,835 test-day results generated in Austria, China, Estonia, Germany, and Spain between January 2019 and March 2020 were available for data analyses. Cows were categorised into four UHG depending on test day SCC and DSCC results (UHG A: healthy/normal, ≤200,000 cells/mL and ≤65 %; B: suspicious, ≤200,000 cells/mL and >65 %; C: mastitis, >200,000 cells/mL and >65 %; D: chronic/persistent mastitis, >200,000 cells/mL and ≤65 %). Linear mixed effect models were used to compare the performance of cows between the UHG based on the parameters milk weight, energy-corrected milk, fat, protein, lactose, and estimated milk value. Highest performance was found for cows in UHG A and ranged between 21.4 (Austria) and 38.3 kg per cow and day (Spain). Interestingly, cows in group B were significantly less productive (0.9-2.4% less daily milk production) compared to those in group A. Cows in groups C (6.0-9.8% less daily production compared to group A) and D were, as expected, even less productive with a particularly significant drop for cows in group D (17.5-38.5% less daily production). These trends could be observed in all countries involved in this study. Proportions of cows in the four different UHG differed between countries, changed slightly within countries depending on season, differed depending on parity and days in milk, and were seen to vary hugely between herds. In conclusion, this study demonstrates changes in performance of dairy cows depending on their udder health status as defined based on the combination of SCC and DSCC. In particular cows in UHG B and D are of interest as they cannot be identified working with SCC only. Nevertheless, the actual udder health management measures that could be taken based on the new UHG still require further investigation., (Copyright © 2020 FOSS Analytical A/S. Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
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44. Metal resistant bacteria on gold particles: Implications of how anthropogenic contaminants could affect natural gold biogeochemical cycling.
- Author
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Sanyal SK, Brugger J, Etschmann B, Pederson SM, Delport PWJ, Dixon R, Tearle R, Ludington A, Reith F, and Shuster J
- Subjects
- Bacteria, Geologic Sediments, Rivers, South Africa, Gold, Mercury analysis
- Abstract
In Earth's near-surface environments, gold biogeochemical cycling involves gold dissolution and precipitation processes, which are partly attributed to bacteria. These biogeochemical processes as well as abrasion (via physical transport) are known to act upon gold particles, thereby resulting in particle transformation including the development of pure secondary gold and altered morphology, respectively. While previous studies have inferred gold biogeochemical cycling from gold particles obtained from natural environments, little is known about how metal contamination in an environment could impact this cycle. Therefore, this study aims to infer how potentially toxic metal contaminants could affect the structure and chemistry of gold particles and therefore the biogeochemical cycling of gold. In doing so, river sediments and gold particles from the De Kaap Valley, South Africa, were analysed using both microanalytical and molecular techniques. Of the metal contaminants detected in the sediment, mercury can chemically interact with gold particles thereby directly altering particle morphology and "erasing" textural evidence indicative of particle transformation. Other metal contaminants (including mercury) indirectly affect gold cycling by exerting a selective pressure on bacteria living on the surface of gold particles. Particles harbouring gold-tolerant bacteria with diverse metal resistant genes, such as Arthrobacter sp. and Pseudomonas sp., contained nearly two times more secondary gold relative to particles harbouring bacteria with less gold-tolerance. In conclusion, metal contaminants can have a direct or indirect effect on gold biogeochemical cycling in natural environments impacted by anthropogenic activity., Competing Interests: Declaration of competing interest The author declares no competing interest., (Copyright © 2020 Elsevier B.V. All rights reserved.)
- Published
- 2020
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45. A genomic perspective of metal-resistant bacteria from gold particles: Possible survival mechanisms during gold biogeochemical cycling.
- Author
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Sanyal SK, Reith F, and Shuster J
- Subjects
- Australia, Cupriavidus, Genomics, Gold, Metal Nanoparticles, Metals, Heavy toxicity
- Abstract
A bacterial consortium was enriched from gold particles that 'experienced' ca. 80 years of biotransformation within waste-rock piles (Australia). This bacterial consortium was exposed to 10 µM AuCl3 to obtain Au-tolerant bacteria. From these isolates, Serratia sp. and Stenotrophomonas sp. were the most Au-tolerant and reduced soluble Au as pure gold nanoparticles, indicating that passive mineralisation is a mechanism for mediating the toxic effect of soluble Au produced during particle dissolution. Genome-wide analysis demonstrated that these isolates also possessed various genes that could provide cellular defence enabling survival under heavy-metal stressed condition by mediating the toxicity of heavy metals through active efflux/reduction. Diverse metal-resistant genes or genes clusters (cop, cus, czc, zntand ars) were detected, which could confer resistance to soluble Au. Comparative genome analysis revealed that the majority of detected heavy-metal resistant genes were similar (i.e. orthologous) to those genes of Cupriavidus metallidurans CH34. The detection of heavy-metal resistance, nutrient cycling and biofilm formation genes (pgaABCD, bsmAandhmpS) may have indirect yet important roles when dealing with soluble Au during particle dissolution. In conclusion, the physiological and genomic results suggest that bacteria living on gold particles would likely use various genes to ensure survival during Au-biogeochemical cycling., (© FEMS 2020.)
- Published
- 2020
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46. Application of Deep Learning to Predict Standardized Uptake Value Ratio and Amyloid Status on 18 F-Florbetapir PET Using ADNI Data.
- Author
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Reith F, Koran ME, Davidzon G, and Zaharchuk G
- Subjects
- Aged, Aniline Compounds, Brain diagnostic imaging, Ethylene Glycols, Female, Fluorine Radioisotopes, Humans, Image Processing, Computer-Assisted methods, Male, Radiopharmaceuticals, Alzheimer Disease diagnostic imaging, Deep Learning, Neuroimaging methods, Plaque, Amyloid diagnostic imaging, Positron-Emission Tomography methods
- Abstract
Background and Purpose: Cortical amyloid quantification on PET by using the standardized uptake value ratio is valuable for research studies and clinical trials in Alzheimer disease. However, it is resource intensive, requiring co-registered MR imaging data and specialized segmentation software. We investigated the use of deep learning to automatically quantify standardized uptake value ratio and used this for classification., Materials and Methods: Using the Alzheimer's Disease Neuroimaging Initiative dataset, we identified 2582
18 F-florbetapir PET scans, which were separated into positive and negative cases by using a standardized uptake value ratio threshold of 1.1. We trained convolutional neural networks (ResNet-50 and ResNet-152) to predict standardized uptake value ratio and classify amyloid status. We assessed performance based on network depth, number of PET input slices, and use of ImageNet pretraining. We also assessed human performance with 3 readers in a subset of 100 randomly selected cases., Results: We have found that 48% of cases were amyloid positive. The best performance was seen for ResNet-50 by using regression before classification, 3 input PET slices, and pretraining, with a standardized uptake value ratio root-mean-square error of 0.054, corresponding to 95.1% correct amyloid status prediction. Using more than 3 slices did not improve performance, but ImageNet initialization did. The best trained network was more accurate than humans (96% versus a mean of 88%, respectively)., Conclusions: Deep learning algorithms can estimate standardized uptake value ratio and use this to classify18 F-florbetapir PET scans. Such methods have promise to automate this laborious calculation, enabling quantitative measurements rapidly and in settings without extensive image processing manpower and expertise., (© 2020 by American Journal of Neuroradiology.)- Published
- 2020
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47. Functional capabilities of bacterial biofilms on gold particles.
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Reith F, Falconer DM, Van Nostrand J, Craw D, Shuster J, and Wakelin S
- Subjects
- Bacteria classification, Bacteria genetics, Bacteria isolation & purification, Bacterial Proteins genetics, Bacterial Proteins metabolism, Biomineralization, Metals, Heavy metabolism, Microbiota, Nutrients metabolism, Stress, Physiological, Bacteria metabolism, Biofilms growth & development, Gold metabolism
- Abstract
Gold particles contain gold and other toxic, heavy metals, making them 'extreme' geochemical microenvironments. To date, the functional capabilities of bacterial biofilms to deal with these conditions have been inferred from taxonomic analyses. The aims of this study are to evaluate the functional capabilities of bacterial communities on gold particles from six key locations using GeoChip 5.0 and to link functional and taxonomic data. Biofilm communities displayed a wide range of functional capabilities, with up to 53 505 gene probes detected. The capability of bacterial communities to (re)cycle carbon, nitrogen, and sulphur were detected. The cycling of major nutrients is important for maintaining the biofilm community as well as enabling the biogeochemical cycling and mobilisation of heavy and noble metals. Additionally, a multitude of stress- and heavy metal resistance capabilities were also detected, most notably from the α/β/γ-Proteobacteria and Actinobacteria. The multi-copper-oxidase gene copA, which is directly involved in gold resistance and biomineralisation, was the 15th most intense response and was detected in 246 genera. The Parker Road and Belle Brooke sites were consistently the most different from other sites, which may be a result of local physicochemical conditions (extreme nutrient poverty and sulphur-richness, respectively). In conclusion, biofilms on gold particles display wide-ranging metabolic and stress-related capabilities, which may enable them to survive in these niche environments and drive biotransformation of gold particles., (© FEMS 2019.)
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- 2020
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48. Collaborative involvement of woody plant roots and rhizosphere microorganisms in the formation of pedogenetic clays.
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Reith F, Verboom W, Pate J, and Chittleborough D
- Subjects
- Australia, Plant Roots, RNA, Ribosomal, 16S, Soil Microbiology, Clay, Rhizosphere
- Abstract
Background and Aims: Previous studies have described the laying down of specific B horizons in south-western Australian ecosystems. This paper presents biomolecular, morphological and physicochemical analyses elucidating the roles of specific woody plant taxa and rhizosphere bacteria in producing these phenomena., Methods: Clayey deposits within lateral root systems of eucalypts and appropriate background soil samples were collected aseptically at multiple locations on sand dunes flanking Lake Chillinup. Bacterial communities were profiled using tagged next-generation sequencing (Miseq) of the 16S rRNA gene and assigned to operational taxonomic units. Sedimentation, selective dissolution and X-ray diffraction analyses quantitatively identified clay mineral components. Comparisons were made of pedological features between the above eucalypt systems, giant podzols under proteaceous woodland on sand dunes at the study site of Jandakot and apparently similar systems observed elsewhere in the world., Key Results: Bacterial communities in clay pods are highly diverse, resolving into 569 operational taxonomic units dominated by Actinobacteria at 38.0-87.4 % of the total reads. Multivariate statistical analyses of community fingerprints demonstrated substrate specificity. Differently coloured pods on the same host taxon carry distinctive microfloras correlated to diversities and abundances of Actinobacteria, Acidobacteria, Firmicutes and Proteobacteria. A number of these microbes are known to form biominerals, such as phyllosilicates, carbonates and Fe-oxides. A biogenic origin is suggested for the dominant identified mineral precipitates, namely illite and kaolinite. Comparisons of morphogenetic features of B horizons under eucalypts, tree banksias and other vegetation types show remarkably similar developmental trajectories involving pods of precipitation surrounding specialized fine rootlets and their orderly growth to form a continuous B horizon., Conclusions: The paper strongly supports the hypothesis that B-horizon development is mediated by highly sophisticated interactions of host plant and rhizosphere organisms in which woody plant taxa govern overall morphogenesis and supply of mineral elements for precipitation, while rhizosphere microorganisms execute biomineralization processes., (© The Author(s) 2019. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2019
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49. Biogeochemical gold cycling selects metal-resistant bacteria that promote gold particle transformation.
- Author
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Sanyal SK, Shuster J, and Reith F
- Subjects
- Bacteria classification, Bacteria genetics, Bacteria isolation & purification, Biomineralization, Gold chemistry, Kinetics, Metal Nanoparticles chemistry, Metals metabolism, Microbiota, RNA, Ribosomal, 16S genetics, Silver metabolism, Bacteria metabolism, Gold metabolism, Metal Nanoparticles microbiology
- Abstract
Bacteria catalyze the dissolution and re-precipitation of gold, thereby driving the biogeochemical cycle of gold. Dissolution of gold/silver and re-precipitation of gold transforms gold particles by increasing gold purity. While soluble gold complexes are highly cytotoxic, little is known about how gold cycling affects bacterial communities residing on gold particles. Micro-analysis of gold particles obtained from Western Australia revealed porous textures and aggregates of pure gold nanoparticles, attributable to gold dissolution and re-precipitation, respectively. By interpreting structure and chemistry of particles, the kinetics of gold biogeochemical cycling at the site was estimated to be 1.60 × 10-9 M year-1. Bacterial communities residing on particles were composed of Proteobacteria (42.5%), Bacteroidetes (20.1%), Acidobacteria (19.1%), Firmicutes (8.2%), Actinobacteria (3.7%) and Verrucomicrobia (3.6%). A bacterial enrichment culture obtained from particles contained a similar composition. Exposure of enrichments to increasing concentrations of soluble gold decreased community diversity and selected for metal-resistant bacteria. Lower gold concentrations, which corresponded well with the concentration from the kinetic rate, provided a selective pressure for the selection of metal-resistant organisms while retaining the overall diversity. In conclusion, biogeochemical gold cycling directly influences bacterial communities on gold particles, thereby contributing to a continuum of particle transformation., (© FEMS 2019.)
- Published
- 2019
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50. Progressive biogeochemical transformation of placer gold particles drives compositional changes in associated biofilm communities.
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Rea MA, Standish CD, Shuster J, Bissett A, and Reith F
- Subjects
- Bacteria genetics, Biofilms drug effects, High-Throughput Nucleotide Sequencing, RNA, Ribosomal, 16S genetics, United Kingdom, Bacteria classification, Bacteria isolation & purification, Biofilms growth & development, Gold metabolism, Microbiota drug effects
- Abstract
Biofilms on placer gold (Au)-particle surfaces drive Au solubilization and re-concentration thereby progressively transforming the particles. Gold solubilization induces Au-toxicity; however, Au-detoxifying community members ameliorates Au-toxicity by precipitating soluble Au to metallic Au. We hypothesize that Au-dissolution and re-concentration (precipitation) place selective pressures on associated microbial communities, leading to compositional changes and subsequent Au-particle transformation. We analyzed Au-particles from eight United Kingdom sites using next generation sequencing, electron microscopy and micro-analyses. Gold particles contained biofilms composed of prokaryotic cells and extracellular polymeric substances intermixed with (bio)minerals. Across all sites communities were dominated by Proteobacteria (689, 97% Operational Taxonomic Units, 59.3% of total reads), with β-Proteobacteria being the most abundant. A wide range of Au-morphotypes including nanoparticles, micro-crystals, sheet-like Au and secondary rims, indicated that dissolution and re-precipitation occurred, and from this transformation indices were calculated. Multivariate statistical analyses showed a significant relationship between the extent of Au-particle transformation and biofilm community composition, with putative metal-resistant Au-cycling taxa linked to progressive Au transformation. These included the genera Pseudomonas, Leptothrix and Acinetobacter. Additionally, putative exoelectrogenic genera Rhodoferax and Geobacter were highly abundant. In conclusion, biogeochemical Au-cycling and Au-particle transformation occurred at all sites and exerted a strong influence on biofilm community composition.
- Published
- 2018
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