35 results on '"Reddy BD"'
Search Results
2. Some properties of the dissipative model of strain-gradient plasticity
- Author
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Carstensen, C, Ebobisse, F, McBride, AT, Reddy, BD, and Steinmann, P
- Subjects
Condensed Matter - Materials Science ,Mathematics - Numerical Analysis ,74C05 - Abstract
A theoretical and computational investigation is carried out of a dissipative model of rate-independent strain-gradient plasticity and its regularization. It is shown that the flow relation, when expressed in terms of the Cauchy stress, is necessarily global. The most convenient approach to formulating the flow relation is through the use of a dissipation function. It is shown, however, that the task of obtaining the dual version, in the form of a normality relation, is a complex one. A numerical investigation casts further light on the response using the dissipative theory in situations of non-proportional loading. The elastic gap, a feature reported in recent investigations, is observed in situations in which passivation has been imposed. It is shown computationally that the gap may be regarded as an efficient path between a load-deformation response corresponding to micro-free boundary conditions, and that corresponding to micro-hard boundary conditions, in which plastic strains are set equal to zero., Comment: 26 pages, 10 figures
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- 2016
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3. Finite element analysis of self expanding braided wire stents
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De Beule, Matthieu, Conti, Michele, Mortier, Peter, Verdonck, Pascal, Segers, Patrick, Auricchio, Ferdinando, Verhegghe, Benedict, Malan, AG, Nithiarasu, P, and Reddy, BD
- Subjects
Technology and Engineering - Published
- 2010
4. Harnessing the power of native biocontrol agents against wilt disease of Pigeonpea incited by Fusarium udum.
- Author
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Reddy BD, Kumar B, Sahni S, Yashaswini G, Karthik S, Reddy MSS, Kumar R, Mukherjee U, and Krishna KS
- Subjects
- Biological Control Agents, Trichoderma physiology, Rhizosphere, Soil Microbiology, Pest Control, Biological methods, Fusarium pathogenicity, Cajanus microbiology, Plant Diseases microbiology, Plant Diseases prevention & control
- Abstract
Fusarium wilt, caused by (Fusarium udum Butler), is a significant threat to pigeonpea crops worldwide, leading to substantial yield losses. Traditional approaches like fungicides and resistant cultivars are not practical due to the persistent and evolving nature of the pathogen. Therefore, native biocontrol agents are considered to be more sustainable solution, as they adapt well to local soil and climatic conditions. In this study, five isolates of F. udum infecting pigeonpea were isolated from various cultivars and characterized morphologically and molecularly. The isolate from the ICP 8858 cultivar displayed the highest virulence of 90%. Besides, 100 endophytic bacteria, 100 rhizosphere bacteria and three Trichoderma spp. were isolated and tested against F. udum isolated from ICP 8858 under in vitro conditions. Out of the 200 bacteria tested, nine showed highest inhibition, including Rb-4 (Bacillus sp.), Rb-11 (B. subtilis), Rb-14 (B. megaterium), Rb-18 (B. subtilis), Rb-19 (B. velezensis), Eb-8 (Bacillus sp.), Eb-11 (B. subtilis), Eb-13 (P. aeruginosa), and Eb-21 (P. aeruginosa). Similarly, Trichoderma spp. were identified as T. harzianum, T. asperellum and Trichoderma sp. Notably, Rb-18 (B. subtilis) and Eb-21 (P. aeruginosa) exhibited promising characteristics such as the production of hydrogen cyanide (HCN), cellulase, siderophores, ammonia and nutrient solubilization. Furthermore, treating pigeonpea seedlings with these beneficial microorganisms led to increased levels of key enzymes (POD, PPO, and PAL) associated with resistance to Fusarium wilt, compared to untreated controls. In field trials conducted for four seasons, the application of these potential biocontrol agents as seed treatments on the susceptible ICP2376 cultivar led to the lowest disease incidence. Specifically, treatments T2 (33.33) (P. aeruginosa) and T3 (35.41) (T. harzianium) exhibited the lowest disease incidence, followed by T6 (36.5) (Carbendizim), T1 (36.66) (B. subtilis), T4 (52.91) (T. asperellum) and T5 (53.33) (Trichoderma sp.). Results of this study revealed that, P. aeruginosa (Eb-21), B. subtilis (Rb-18) and T. harzianum can be used for plant growth promotion and management of Fusarium wilt of pigeonpea., (© 2024. The Author(s).)
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- 2024
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5. An Overview of Targeting Legumain for Inhibiting Cancers.
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Reddy BD, Beeraka NM, Chitturi CMK, and Madhunapantula SV
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- Cell Proliferation, Humans, Male, Tumor Microenvironment, Cysteine Endopeptidases, Neoplasms drug therapy
- Abstract
Legumain (LGMN; EC: 3.4.22.34), an asparaginyl endopeptidase (AEP) or asparaginyl carboxypeptidase (ACP), is a member of the C13 family of cysteine proteases. Elevated expression of LGMN is reported not only in the tumor cells of breast, prostate, and liver but also in the macrophages of the tumor microenvironment. Hence, LGMN is considered as a key protein involved in the regulation of tumor angiogenesis, invasion, and metastasis. Targeting LGMN using siRNA or pharmacological agents and peptides was reported to reduce cancer cell proliferation in vitro and shrink tumor size in vivo. Moreover, expression of LGMN is significantly low in normal cells compared to tumor cells or tumor-associated macrophages (TAMs); hence, legumain can be used as a marker for tumor recognition and targeting. Therefore, approaches inhibiting LGMN expression or activity are more viable, less toxic, and help in developing the targeted therapeutics. However, to date, LGMN targeting strategies have not been well reported. In this review, an attempt was made to summarize articles pertaining to LGMN (a) structure and activity; (b) oncogenic nature; (c) pharmacological inhibitors; and (d) targeting approaches that inhibit tumor growth. Furthermore, a list of existing gaps in LGMN research is highlighted, which needs additional studies., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
- Published
- 2021
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6. A Feasibility Study of Stereotactic Radiosurgery/Stereotactic body Radiotherapy/Stereotactic Ablative Radiotherapy Practice using TomoEDGE in Helical TomoTherapy for Lung, Liver, and Spine Targets.
- Author
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Sresty NVNM, Raju AK, Kumar GD, Rohit S, Reddy BN, Sahithya VC, Reddy BD, Mohd Y, Rushdi T, Bajwa H, and Aparna S
- Abstract
The primary purpose of the study is to evaluate the implementation of Helical TomoTherapy (HT) for eligible stereotactic radiosurgery/stereotactic body radiotherapy/stereotactic ablative radiotherapy (SRS/SBRT/SABR) cases using TomoEDGE option. The study focuses on reduction of treatment time without compromise in plan quality using TomoEDGE. It is a mode in HT that uses a dynamic opening of the jaws during treatment delivery to reduce the dose penumbra which otherwise is not possible with fixed jaws option. Eligible SRS/SBRT/SABR cases of lung, liver, and spine were used in this study. All planning parameters such as dose prescription to target and critical organs, pitch, and modulation factor were same in all the plans of the same patient with modifications in the field width and jaw mode. First set of plans with 2.5 cm width and second set of plans with 5 cm width were done in dynamic TomoEDGE mode. Third set of plans created with 5 cm width fixed jaw mode and fourth set of plans with 2.5 cm fixed jaw mode for comparison purpose were done. Our observations achieved that a significant milestone with reduction of up to 34.3% in treatment time of liver cases, 35.2% in lung cases, and 28.7% in spine cases was observed using dynamic TomoEDGE mode with 5 cm width, while no significant variation in the planning results compared with plans using 2.5 cm dynamic TomoEDGE option. TomoEDGE is an efficient and useful mode in TomoTherapy to reduce the treatment time with bigger field width in SRS/SBRT/SABR cases without significant changes in the plan quality., Competing Interests: There are no conflicts of interest., (Copyright: © 2021 Journal of Medical Physics.)
- Published
- 2021
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7. Computationally modelling the mechanical behaviour of turtle shell sutures-A natural interlocking structure.
- Author
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Alheit B, Bargmann S, and Reddy BD
- Subjects
- Animals, Anisotropy, Finite Element Analysis, Stress, Mechanical, Sutures, Turtles
- Abstract
Sutures, the soft collagenous tissue joining interdigitating bony protrusions on the edges of bone plates, play a significant mechanical role in allowing a turtle shell to respond optimally to a range of loading regimes. In this contribution, qualitative and quantitative aspects of the mechanical behaviour of turtle shell suture regions are investigated by means of mathematical modelling. Notable features of the model include: (i) a geometrically realistic three dimensional model for the suture geometry; (ii) taking the hyperelastic, anisotropic and incompressible nature of the suture material into account; and (iii) a novel method for defining the collagen fibre directions within the suture. The model is validated against a physical three point bending test and replicates many of the qualitative and quantitative aspects of the mechanical behaviour. The model is then used to elucidate the effect that sutures have on the shell's mechanical behaviour during a predator attack. It is found that the sutures increase the energy required from a predator during an attack whilst cushioning the brittle bone, and so protecting it from fracture. Additionally, longer bony protrusions increase strain energy absorption but also increase the likelihood of fracture., (Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2020
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8. University racism report: Cape Town replies.
- Author
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Reddy BD
- Subjects
- Faculty statistics & numerical data, Politics, Research Personnel statistics & numerical data, South Africa, Racism prevention & control, Racism statistics & numerical data, Universities statistics & numerical data
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- 2019
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9. Microstructurally-based constitutive modelling of the skin - Linking intrinsic ageing to microstructural parameters.
- Author
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Pond D, McBride AT, Davids LM, Reddy BD, and Limbert G
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- Animals, Anisotropy, Collagen metabolism, Elastin metabolism, Finite Element Analysis, Humans, Aging, Biomechanical Phenomena physiology, Models, Biological, Skin ultrastructure
- Abstract
A multiphasic constitutive model of the skin that implicitly accounts for the process of intrinsic (i.e. chronological) ageing via variation of the constitutive parameters is proposed. The structurally-motivated constitutive formulation features distinct mechanical contributions from collagen and elastin fibres. The central hypothesis underpinning this study is that the effects of ageing on the mechanical properties of the tissue are directly linked to alterations in the microstructural characteristics of the collagen and elastin networks. Constitutive parameters in the model, corresponding to different ages, are identified from published experimental data on bulge tests of human skin. The numerical results demonstrate that degradation of the elastin meshwork and variations in anisotropy of the collagen network are plausible mechanisms to explain ageing in terms of macroscopic tissue stiffening. Whereas alterations in elastin affect the low-modulus region of the skin stress-strain curve, those related to collagen have an impact on the linear region., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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10. A validated patient-specific FSI model for vascular access in haemodialysis.
- Author
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de Villiers AM, McBride AT, Reddy BD, Franz T, and Spottiswoode BS
- Subjects
- Algorithms, Biomechanical Phenomena, Calibration, Catheters, Computer Simulation, Humans, Imaging, Three-Dimensional, Magnetic Resonance Imaging, Numerical Analysis, Computer-Assisted, Pressure, Reproducibility of Results, Stress, Mechanical, Systole, Blood Vessels physiology, Finite Element Analysis, Models, Cardiovascular, Renal Dialysis
- Abstract
The flow rate inside arteriovenous fistulas is many times higher than physiological flow and is accompanied by high wall shear stress resulting in low patency rates. A fluid-structure interaction finite element model is developed to analyse the blood flow and vessel mechanics to elucidate the mechanisms that can lead to failure. The simulations are validated against flow measurements obtained from magnetic resonance imaging data.
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- 2018
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11. Naturally occurring benzoic acid derivatives retard cancer cell growth by inhibiting histone deacetylases (HDAC).
- Author
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Anantharaju PG, Reddy BD, Padukudru MA, Kumari Chitturi CM, Vimalambike MG, and Madhunapantula SV
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- Animals, Antineoplastic Agents chemistry, Apoptosis drug effects, Benzoic Acid chemistry, Binding Sites, Cell Cycle drug effects, Cell Line, Tumor, Cell Proliferation drug effects, Dose-Response Relationship, Drug, Female, HeLa Cells, Histone Deacetylase Inhibitors chemistry, Humans, Hydroxamic Acids chemistry, Hydroxamic Acids metabolism, Male, Mice, Models, Molecular, Molecular Structure, Protein Binding, Structure-Activity Relationship, Antineoplastic Agents pharmacology, Benzoic Acid pharmacology, Histone Deacetylase Inhibitors pharmacology
- Abstract
Histone deacetylases (HDACs), which modulate the expression of genes, are potential therapeutic targets in several cancers. Targeted inhibition of HDAC prevents the expression of oncogenes thereby help in the treatment of cancers. Hence, several pharmaceutical companies developed inhibitors of HDAC and tested them in preclinical models and in clinical trials. SAHA (suberanilohydroxamic acid) is one such HDAC inhibitor developed for treating breast and colorectal carcinomas. However, due to poor efficacy in clinical trials the utility of SAHA for treating cancers was discouraged. Similarly another HDAC inhibitor Trichostatin-A (TSA) also showed promising results in clinical trials but exhibited severe adverse effects, which dampened the interest of using this molecule for cancer treatment. Therefore, search for developing a potent HDAC inhibitor with minimal side effects still continues. Hence, in this study we have screened benzoic acid and benzoic acid derivatives with hydroxylic (-OH) groups and methoxy (-OCH3) groups for their efficacy to bind to the TSA binding site of HDAC using molecular docking studies. Molecules that showed much stronger affinity (than TSA) to HDAC were tested for inhibiting HDAC expressing cultured cancer cells. DHBA but not Dimethoxy Benzoic Acid (DMBA) inhibited HDAC activity, leading to cancer cell growth inhibition through the induction of ROS and cellular apoptosis mediated by Caspase-3. In addition, DHBA arrested cells in G2/M phase of the cell cycle and elevated the levels of sub-G0-G1 cell population. In summary, results of this study report that DHBA could be a strong HDAC inhibitor and inhibit cancer cell growth more effectively.
- Published
- 2017
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12. Rapid epigenetic adaptation to uncontrolled heterochromatin spreading.
- Author
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Wang J, Reddy BD, and Jia S
- Subjects
- Base Sequence, Genetic Loci, Histones metabolism, Inheritance Patterns genetics, Models, Genetic, Mutation genetics, Schizosaccharomyces growth & development, Schizosaccharomyces pombe Proteins metabolism, Suppression, Genetic, Adaptation, Biological genetics, Epigenesis, Genetic, Heterochromatin metabolism, Schizosaccharomyces genetics
- Abstract
Heterochromatin, a highly compact chromatin state characterized by histone H3K9 methylation and HP1 protein binding, silences the underlying DNA and influences the expression of neighboring genes. However, the mechanisms that regulate heterochromatin spreading are not well understood. In this study, we show that the conserved Mst2 histone acetyltransferase complex in fission yeast regulates histone turnover at heterochromatin regions to control heterochromatin spreading and prevents ectopic heterochromatin assembly. The combined loss of Mst2 and the JmjC domain protein Epe1 results in uncontrolled heterochromatin spreading and massive ectopic heterochromatin, leading to severe growth defects due to the inactivation of essential genes. Interestingly, these cells quickly recover by accumulating heterochromatin at genes essential for heterochromatin assembly, leading to their reduced expression to restrain heterochromatin spreading. Our studies discover redundant pathways that control heterochromatin spreading and prevent ectopic heterochromatin assembly and reveal a fast epigenetic adaptation response to changes in heterochromatin landscape.
- Published
- 2015
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13. Computational analysis of the radial mechanical performance of PLLA coronary artery stents.
- Author
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Pauck RG and Reddy BD
- Subjects
- Absorbable Implants, Anisotropy, Blood Vessel Prosthesis, Calibration, Computer Simulation, Elastic Modulus, Equipment Failure Analysis, Finite Element Analysis, Lactic Acid, Models, Theoretical, Polyesters, Polymers, Prosthesis Design, Tensile Strength, Coronary Vessels, Stents
- Abstract
Stents have been an effective tool to restore and maintain the patency of narrowed blood vessels, but they must have sufficient radial strength. Biodegradable stent materials have substantially lower mechanical properties than permanent stents. The stent geometry and material properties must be considered simultaneously when assessing stent performance. Material tests were performed to determine the mechanical characteristics of high-molecular-weight poly-l-lactic acid (PLLA). The results were used to calibrate an anisotropic elastic-plastic material model. Three distinct geometries were analysed with a range of material stiffness values in a finite element analysis to investigate their comparative effect on the radial strength, recoil, and radial stiffness. The performance of the different geometries varies substantially, with one particular geometry, with the highest material stiffness of 9 GPa, exceeding the desired radial strength of 300 mmHg., (Copyright © 2014 IPEM. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2015
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14. Development of a computational biomechanical model of the human upper-airway soft-tissues toward simulating obstructive sleep apnea.
- Author
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Pelteret JP and Reddy BD
- Subjects
- Biomechanical Phenomena physiology, Connective Tissue pathology, Connective Tissue physiopathology, Female, Finite Element Analysis, Humans, Muscle, Skeletal pathology, Muscle, Skeletal physiopathology, Respiratory System pathology, Sleep Apnea, Obstructive pathology, Tongue pathology, Tongue physiopathology, Computer Simulation, Models, Anatomic, Models, Theoretical, Respiratory System physiopathology, Sleep Apnea, Obstructive physiopathology
- Abstract
Numerous challenges are faced in investigations aimed at developing a better understanding of the pathophysiology of obstructive sleep apnea (OSA). The anatomy of the tongue and other upper-airway tissues, and the ability to model their behavior, are central to such investigations. We present details of the construction and development of a soft-tissue model of the human upper airway, with the ultimate goal of simulating obstructive sleep apnea. The steps taken to produce a representative anatomical geometry, of which the associated muscle histology is also captured, are documented. An overview of the mathematical models used to describe tissue behavior, both at a macro- and microscopic level, is given. A neurological model, which mimics the proprioceptive capabilities of the body, is described as it is applies to control of the active dynamics of the tongue. A simplified scenario, which allows for the manipulation of several environmental influences, is presented. It is demonstrated that the response of the genioglossus is qualitatively similar to that determined through experimental techniques. Furthermore, insights into the stress distribution developed within the tongue are discussed. It is shown that changes in almost any aspect of the breathing or physiological conditions invoke a significant change in the response of the airway dilators. The results of this study provide further evidence of the importance of modeling and simulation techniques as an aid in understanding the complex behavior of the human body., (Copyright © 2013 Wiley Periodicals, Inc.)
- Published
- 2014
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15. Studying the influence of hydrogel injections into the infarcted left ventricle using the element-free Galerkin method.
- Author
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Legner D, Skatulla S, MBewu J, Rama RR, Reddy BD, Sansour C, Davies NH, and Franz T
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- Biomechanical Phenomena, Humans, Stress, Mechanical, Computer Simulation, Heart Ventricles physiopathology, Hydrogel, Polyethylene Glycol Dimethacrylate therapeutic use, Models, Cardiovascular, Myocardial Infarction physiopathology, Myocardial Infarction therapy
- Abstract
Myocardial infarction is an increasing health problem worldwide. Because of an under-supply of blood, the cardiomyocytes in the affected region permanently lose their ability to contract. This in turn gradually weakens the overall heart function. A new therapeutic approach based on the injection of a gel into the infarcted area aims to support the healing and to inhibit adverse remodelling that can lead to heart failure. A computational model is the basis for obtaining a better understanding of the heart mechanics, in particular, how myocardial infarction and gel injections affect its pumping performance. A strain invariant-based stored energy function is proposed to account for the passive mechanical behaviour of the model, which also makes provision for active contraction. To incorporate injections an additive homogenization approach is introduced. The numerical framework is developed using an in-house code based on the element-free Galerkin method. The main focus of this contribution is to investigate the influence of gel injections on the mechanics of the left ventricle during the diastolic filling and systolic isovolumetric (isochoric) contraction phases. It is found that gel injections are able to reduce the elevated fibre stresses caused by an infarct., (Copyright © 2013 John Wiley & Sons, Ltd.)
- Published
- 2014
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16. Elimination of shelterin components bypasses RNAi for pericentric heterochromatin assembly.
- Author
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Tadeo X, Wang J, Kallgren SP, Liu J, Reddy BD, Qiao F, and Jia S
- Subjects
- Chromosomal Proteins, Non-Histone metabolism, Mutation, Schizosaccharomyces pombe Proteins genetics, Schizosaccharomyces pombe Proteins metabolism, Telomere-Binding Proteins metabolism, Chromatin Assembly and Disassembly genetics, Heterochromatin metabolism, RNA Interference, Schizosaccharomyces genetics, Schizosaccharomyces metabolism, Telomere-Binding Proteins genetics
- Abstract
The RNAi pathway is required for heterochromatin assembly at repetitive DNA elements in diverse organisms. In fission yeast, loss of RNAi causes pericentric heterochromatin defects, compromising gene silencing and chromosome segregation. Here we show that deletion of telomere shelterin components restores pericentric heterochromatin and its functions in RNAi mutants. We further isolated a separation-of-function mutant of Poz1 and revealed that defective telomere silencing, but not telomere length control, is critical for bypassing RNAi. Further analyses demonstrated that compromising shelterin-mediated heterochromatin assembly in RNAi mutants releases heterochromatin protein Swi6, which is redistributed to pericentric regions through RNAi-independent heterochromatin assembly pathways. Given the high mobility of Swi6 protein and that increased levels of Swi6 facilitates heterochromatin spreading as well as ectopic heterochromatin assembly, our results suggest that constitutive heterochromatin domains use multiple pathways to form high-affinity platforms to restrain Swi6, thus limiting its availability and avoiding promiscuous heterochromatin formation.
- Published
- 2013
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17. Anesthetic and hemodynamic management of a rare case of Brucella multivalvular endocarditis in cardiogenic shock undergoing emergency aortic valve replacement and mitral valve repair.
- Author
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Kandasamy A, Ramalingam SK, Reddy BD, and Krupananda H
- Subjects
- Aged, Brucellosis surgery, Emergencies, Endocarditis, Bacterial complications, Endocarditis, Bacterial physiopathology, Hemodynamics, Humans, Male, Shock, Cardiogenic physiopathology, Anesthesia methods, Aortic Valve surgery, Brucellosis complications, Endocarditis, Bacterial surgery, Heart Valve Prosthesis Implantation methods, Mitral Valve surgery, Shock, Cardiogenic etiology
- Abstract
We describe a very rare case of human brucella multivalvular endocarditis. Patient presented in a state of cardiogenic shock with low urine output and a history of breathlessness. Patient was diagnosed to have brucellosis 2 months back by blood cultures and agglutination tests and was receiving doxycycline and rifampicin therapy. Echocardiography showed severe aortic regurgitation, moderate mitral regurgitation, severe left ventricular dysfunction and a mobile vegetation attached to the aortic valve. Patient was scheduled for emergency surgery; while preparing for surgery hemodynamic monitoring, non-invasive ventilation and inotropic supports were started. During surgery, the aortic valve was found perforated and the aortomitral continuity was disrupted. Aortic valve replacement and mitral valve repair were performed. Hemofiltration was used during cardiopulmonary bypass. Weaning from bypass was achieved with the help of inodilators, dual chamber pacing and intra-aortic balloon pump.
- Published
- 2013
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18. Ultra fast-tracking versus a conventional strategy in valve replacement surgery.
- Author
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Kandasamy A, Ramalingam SK, Simon HA, Arumugham S, Reddy BD, and Krupananda H
- Published
- 2013
- Full Text
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19. The biomechanics of the human tongue.
- Author
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Kajee Y, Pelteret JP, and Reddy BD
- Subjects
- Biomechanical Phenomena, Computer Simulation, Finite Element Analysis, Humans, Image Processing, Computer-Assisted, Muscle, Skeletal anatomy & histology, Muscle, Skeletal physiology, Sleep Apnea, Obstructive, Visible Human Projects, Models, Anatomic, Tongue anatomy & histology, Tongue physiology
- Abstract
The human tongue is composed mainly of skeletal muscle tissue and has a complex architecture. Its anatomy is characterised by interweaving yet distinct muscle groups. It is a significant contributor to the phenomenon of obstructive sleep apnoea syndrome. A realistic model of the tongue and computational simulations are important in areas such as linguistics and speech therapy. The aim of this work is to report on the construction of a geometric and constitutive model of the human tongue and to demonstrate its use in computational simulations for obstructive sleep apnoea syndrome research. The geometry of the tongue and each muscle group of the tongue, including muscle fibre orientations, are captured from the Visible Human Project dataset. The fully linear muscle model is based on the Hill three-element model that represents the constituent parts of muscle fibres. The mechanics of the model are limited to quasi-static, small-strain, linear-elastic behaviour. The main focus of this work is on the material directionality and muscle activation. The transversely isotropic behaviour of the muscle tissue is accounted for, as well as the influence of muscle activation. The behaviour of the model is illustrated in a number of benchmark tests and for the case of a subject in the supine position., (Copyright © 2013 John Wiley & Sons, Ltd.)
- Published
- 2013
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20. Mechanics of cranial sutures during simulated cyclic loading.
- Author
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Jasinoski SC and Reddy BD
- Subjects
- Computer Simulation, Elastic Modulus physiology, Humans, Tensile Strength physiology, Viscosity, Cranial Sutures physiology, Models, Biological, Skull physiology
- Abstract
Previous computational and experimental analyses revealed that cranial sutures, fibrous joints between the bones, can reduce the strain experienced by the surrounding skull bones during mastication. This damping effect reflects the importance of including sutures in finite element (FE) analyses of the skull. Using the FE method, the behaviour of three suture morphologies of increasing complexity (butt-ended, moderate interdigitated, and complex interdigitated) during static loading was recently investigated, and the sutures were assumed to have linear elastic properties. In the current study, viscoelastic properties, derived from published experimental results of the nasofrontal suture of young pigs (Sus scrofa), are applied to the three idealised bone-suture models. The effects of suture viscoelasticity on the stress, strain, and strain energy in the models were computed for three different frequencies (corresponding to periods of 1, 10, and 100s) and compared to the results of a static, linear elastic analysis. The range of applied frequencies broadly represents different physiological activities, with the highest frequency simulating mastication and the lowest frequency simulating growth and pressure of the surrounding tissues. Comparing across all three suture morphologies, strain energy and strain in the suture decreased with the increase in suture complexity. For each suture model, the magnitude of strain decreased with an increase in frequency, and the magnitudes were similar for both the elastic and 1s frequency analyses. In addition, a viscous response is less apparent in the higher frequency analyses, indicating that viscous properties are less important to the behaviour of the suture during those analyses. The FE results suggest that implementation of viscoelastic properties may not be necessary for computational studies of skull behaviour during masticatory loading but instead might be more relevant for studies examining lower frequency physiological activities., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2012
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21. Histone H3 lysine 14 acetylation is required for activation of a DNA damage checkpoint in fission yeast.
- Author
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Wang Y, Kallgren SP, Reddy BD, Kuntz K, López-Maury L, Thompson J, Watt S, Ma C, Hou H, Shi Y, Yates JR 3rd, Bähler J, O'Connell MJ, and Jia S
- Subjects
- Acetylation, Acetyltransferases genetics, Chromatin genetics, DNA, Fungal genetics, Histones genetics, Mutation, Schizosaccharomyces genetics, Schizosaccharomyces pombe Proteins genetics, Acetyltransferases metabolism, Chromatin metabolism, DNA Damage physiology, DNA, Fungal metabolism, Histones metabolism, Schizosaccharomyces metabolism, Schizosaccharomyces pombe Proteins metabolism
- Abstract
Histone lysine acetylation has emerged as a key regulator of genome organization. However, with a few exceptions, the contribution of each acetylated lysine to cellular functions is not well understood because of the limited specificity of most histone acetyltransferases and histone deacetylases. Here we show that the Mst2 complex in Schizosaccharomyces pombe is a highly specific H3 lysine 14 (H3K14) acetyltransferase that functions together with Gcn5 to regulate global levels of H3K14 acetylation (H3K14ac). By analyzing the effect of H3K14ac loss through both enzymatic inactivation and histone mutations, we found that H3K14ac is critical for DNA damage checkpoint activation by directly regulating the compaction of chromatin and by recruiting chromatin remodeling protein complex RSC.
- Published
- 2012
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22. Computational model of soft tissues in the human upper airway.
- Author
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Pelteret JP and Reddy BD
- Subjects
- Biomechanical Phenomena physiology, Computer Simulation, Finite Element Analysis, Humans, Imaging, Three-Dimensional methods, Linguistics methods, Muscle, Skeletal physiopathology, Neural Networks, Computer, Respiration, Speech Therapy methods, Visible Human Projects, Respiratory System physiopathology, Sleep Apnea, Obstructive physiopathology, Tongue physiology, Tongue physiopathology
- Abstract
This paper presents a three-dimensional finite element model of the tongue and surrounding soft tissues with potential application to the study of sleep apnoea and of linguistics and speech therapy. The anatomical data was obtained from the Visible Human Project, and the underlying histological data was also extracted and incorporated into the model. Hyperelastic constitutive models were used to describe the material behaviour, and material incompressibility was accounted for. An active Hill three-element muscle model was used to represent the muscular tissue of the tongue. The neural stimulus for each muscle group was determined through the use of a genetic algorithm-based neural control model. The fundamental behaviour of the tongue under gravitational and breathing-induced loading is investigated. It is demonstrated that, when a time-dependent loading is applied to the tongue, the neural model is able to control the position of the tongue and produce a physiologically realistic response for the genioglossus.
- Published
- 2012
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23. Numerical studies of problems in biophysics, biomechanics and mechanobiology.
- Author
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Franz T and Reddy BD
- Subjects
- Humans, Biomechanical Phenomena physiology, Biophysics methods, Numerical Analysis, Computer-Assisted
- Published
- 2012
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24. Elimination of a specific histone H3K14 acetyltransferase complex bypasses the RNAi pathway to regulate pericentric heterochromatin functions.
- Author
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Reddy BD, Wang Y, Niu L, Higuchi EC, Marguerat SB, Bähler J, Smith GR, and Jia S
- Subjects
- Centromere metabolism, RNA Polymerase II metabolism, Schizosaccharomyces genetics, Schizosaccharomyces pombe Proteins genetics, Heterochromatin metabolism, Histone Acetyltransferases metabolism, RNA Interference physiology, Schizosaccharomyces enzymology, Schizosaccharomyces pombe Proteins metabolism
- Abstract
In Schizosaccharomyces pombe, the RNAi pathway is required for the formation of pericentric heterochromatin, proper chromosome segregation, and repression of pericentric meiotic recombination. Here we demonstrate that, when the activity of the histone H3 Lys 14 (H3K14) acetyltransferase Mst2 is eliminated, the RNAi machinery is no longer required for pericentric heterochromatin functions. We further reveal that reducing RNA polymerase II recruitment to pericentric regions is essential for maintaining heterochromatin in the absence of RNAi.
- Published
- 2011
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25. Tailored sizes of constrictive external vein meshes for coronary artery bypass surgery.
- Author
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Franz T, Human P, Dobner S, Reddy BD, Black M, Ilsley H, Wolf MF, Bezuidenhout D, Moodley L, and Zilla P
- Subjects
- Adult, Aged, Alloys therapeutic use, Blood Vessel Prosthesis, Female, Humans, In Vitro Techniques, Male, Middle Aged, Prosthesis Design, Saphenous Vein, Tissue and Organ Harvesting, Coronary Artery Bypass, Surgical Mesh
- Abstract
External mesh constriction of vein grafts was shown to mitigate intimal hyperplasia by lowering circumferential wall stress and increasing fluid shear stress. As under-constriction leaves vein segments unsupported and thus prone to neointimal proliferation while over-constriction may cause wall folding optimal mesh sizing holds a key to clinical success. Diameter fluctuations and the occurrence of wall folding as a consequence of external constriction with knitted Nitinol meshes were assessed in saphenous vein grafts from 100 consecutive coronary artery bypass (CABG) patients. Subsequently, mesh dimensions were identified that resulted in the lowest number of mesh sizes for all patients either guaranteeing tight continual mesh contact along the entire graft length (stipulation A) or preventing wall folding (stipulation B). A mathematical data classification analysis and a statistical single-stage partitioning approach were independently applied alternatively prioritizing stipulation A or B. Although the risk of folding linearly increased when constriction exceeded 24.6% (Chi squared test p = 0.0004) the actual incidence of folding (8.6% of veins) as well as the degree of lumenal encroachment (6.2 ± 2.1%) were low. Folds were always single, narrow longitudinal formations (height: 23.3 ± 4.0% of inner diameter/base: 16.6 ± 18.1% of luminal circumference). Both analytical methods provided an optimum number of 4 mesh sizes beyond which no further advantage was seen. While the size ranges recommended by both methods assured continual tight mesh contact with the vein the narrower range suggested by the mathematical data classification analysis (3.0-3.7 mm) put 20.6 ± 12.5% of length in 69% of veins at risk of folding as opposed to 21.3 ± 25.9% being at risk in the wider size range (3.0-4.2 mm) suggested by the statistical partitioning approach. Four mesh sizes would provide uninterrupted mesh contact in 98% of vein grafts in CABG procedures with only 26% of their length being at risk of relatively mild wall folding., (Copyright © 2010 Elsevier Ltd. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
26. A simple fluid-structure coupling algorithm for the study of the anastomotic mechanics of vascular grafts.
- Author
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Schiller NK, Franz T, Weerasekara NS, Zilla P, and Reddy BD
- Subjects
- Finite Element Analysis, Humans, Models, Theoretical, Algorithms, Anastomosis, Surgical, Blood Vessel Prosthesis
- Abstract
Vascular anastomoses constitute a main factor in poor graft performance due to mismatches in distensibility between the host artery and the graft. This work aims at computational fluid-structure investigations of proximal and distal anastomoses of vein grafts and synthetic grafts. Finite element and finite volume models were developed and coupled with a user-defined algorithm. Emphasis was placed on the simplicity of the coupling algorithm. An artery and vein graft showed a larger dilation mismatch than an artery and synthetic graft. The vein graft distended nearly twice as much as the artery while the synthetic graft displayed only approximately half the arterial dilation. For the vein graft, luminal mismatching was aggravated by development of an anastomotic pseudo-stenosis. While this study focused on end-to-end anastomoses as a vehicle for developing the coupling algorithm, it may serve as useful point of departure for further investigations such as other anastomotic configurations, refined modelling of sutures and fully transient behaviour.
- Published
- 2010
- Full Text
- View/download PDF
27. Mechanics of cranial sutures using the finite element method.
- Author
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Jasinoski SC, Reddy BD, Louw KK, and Chinsamy A
- Subjects
- Animals, Anisotropy, Biomechanical Phenomena, Collagen chemistry, Collagen physiology, Compressive Strength, Cranial Sutures anatomy & histology, Finite Element Analysis, Stress, Mechanical, Swine, Swine, Miniature, Tensile Strength, Cranial Sutures physiology, Models, Biological
- Abstract
To investigate how cranial suture morphology and the arrangement of sutural collagen fibres respond to compressive and tensile loads, an idealised bone-suture-bone complex was analysed using a two-dimensional finite element model. Three suture morphologies were simulated with an increasing interdigitation index (I.I.): butt-ended, moderate interdigitated, and complex interdigitated. The collagen matrix within all sutures was modelled as an isotropic material, and as an orthotropic material in the interdigitated sutures with fibre alignment as reported in studies of miniature pigs. Static uniform compressive or tensile loading was applied to the complex. In interdigitated sutures with isotropic material properties, the orientation of the maximum (tensile) principal stresses within the suture matched the collagen fibre orientation observed in compressed and tensed sutures of miniature pigs. This suggests that randomly arranged sutural collagen fibres could optimise to an orientation most appropriate to withstand the predominant type of loading. A compression-resistant fibre arrangement imparted the highest suture strain energy relative to the isotropic and tension-resistant arrangements, indicating that this configuration maximises energy storage. A comparison across the different suture morphologies indicated that bone strain energy generally decreased with a decrease in I.I., irrespective of the sutural fibre arrangement. However, high bone stress at the interdigitation apices shifted to the limbs of the suture with an increase in I.I. These combined findings highlight the importance of suture morphology and anisotropy as properties having a significant influence on sutural mechanics., (Copyright © 2010 Elsevier Ltd. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
28. A mathematical method for constraint-based cluster analysis towards optimized constrictive diameter smoothing of saphenous vein grafts.
- Author
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Franz T, Reddy BD, Human P, and Zilla P
- Subjects
- Aged, Algorithms, Cluster Analysis, Feasibility Studies, Female, Humans, Male, Middle Aged, Pattern Recognition, Automated, Saphenous Vein anatomy & histology, Saphenous Vein physiology, Vasoconstriction physiology, Models, Cardiovascular, Saphenous Vein transplantation
- Abstract
This study was concerned with the cluster analysis of saphenous vein graft data to determine a minimum number of diameters, and their values, for the constrictive smoothing of diameter irregularities of a cohort of veins. Mathematical algorithms were developed for data selection, transformation and clustering. Constrictive diameter values were identified with interactive pattern evaluation and subsequently facilitated in decision-tree algorithms for the data clustering. The novel method proved feasible for the analysis of data of 118 veins grafts, identifying the minimum of two diameter classes. The results were compared to outcome of a statistical recursive partitioning analysis of the data set. The method can easily be implemented in computer-based intelligent systems for the analysis of larger data sets using the diameter classes identified as initial cluster structure.
- Published
- 2010
- Full Text
- View/download PDF
29. Aortic valve leaflet mechanical properties facilitate diastolic valve function.
- Author
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Koch TM, Reddy BD, Zilla P, and Franz T
- Subjects
- Animals, Anisotropy, Aortic Valve anatomy & histology, Biomechanical Phenomena, Diastole physiology, Elasticity, Finite Element Analysis, Heart Valve Prosthesis, Humans, In Vitro Techniques, Models, Animal, Nonlinear Dynamics, Prosthesis Design, Swine, Tensile Strength, Aortic Valve physiology, Computer Simulation, Models, Cardiovascular
- Abstract
This work was concerned with the numerical simulation of the behaviour of aortic valves whose material can be modelled as non-linear elastic anisotropic. Linear elastic models for the valve leaflets with parameters used in previous studies were compared with hyperelastic models, incorporating leaflet anisotropy with pronounced stiffness in the circumferential direction through a transverse isotropic model. The parameters for the hyperelastic models were obtained from fits to results of orthogonal uniaxial tensile tests on porcine aortic valve leaflets. The computational results indicated the significant impact of transverse isotropy and hyperelastic effects on leaflet mechanics; in particular, increased coaptation with peak values of stress and strain in the elastic limit. The alignment of maximum principal stresses in all models follows approximately the coarse collagen fibre distribution found in aortic valve leaflets. The non-linear elastic leaflets also demonstrated more evenly distributed stress and strain which appears relevant to long-term scaffold stability and mechanotransduction.
- Published
- 2010
- Full Text
- View/download PDF
30. The use of finite element methods and genetic algorithms in search of an optimal fabric reinforced porous graft system.
- Author
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Yeoman MS, Reddy BD, Bowles HC, Zilla P, Bezuidenhout D, and Franz T
- Subjects
- Algorithms, Computer Simulation, Computer-Aided Design, Finite Element Analysis, Models, Genetic, Prosthesis Design methods, Arteries physiology, Arteries transplantation, Bioprosthesis, Blood Vessel Prosthesis, Models, Cardiovascular, Textiles, Transplants
- Abstract
The mechanics of arteries result from the properties of the soft tissue constituents and the interaction of the wall layers, predominantly media and adventitia. This concept was adopted in this study for the design of a tissue regenerative vascular graft. To achieve the desired structural properties of the graft, most importantly a diametric compliance of 6%/100 mmHg, finite element methods and genetic algorithms were used in an integrated approach to identify the mechanical properties of an adventitial fabric layer that were required to optimally complement an intimal/medial polyurethane layer with interconnected porosity of three different size classes. The models predicted a compliance of 16.0, 19.2, and 31.5%/100 mmHg for the non-reinforced grafts and 5.3, 5.5, and 6.0%/100 mmHg for the fabric-reinforced grafts. The latter, featuring fabrics manufactured according to the required non-linear mechanical characteristics numerically predicted, exhibited an in vitro compliance of 2.1 +/- 0.8, 3.0 +/- 2.4, and 4.0 +/- 0.7% /100 mmHg. The combination of finite element methods and genetic algorithms was shown to be able to successfully optimize the mechanical design of the composite graft. The method offers potential for the application to alternative concepts of modular vascular grafts and the incorporation of tissue ingrowth and biodegradation.
- Published
- 2009
- Full Text
- View/download PDF
31. Heterochromatin: lost in transcription?
- Author
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Reddy BD and Jia S
- Subjects
- Chromatin Assembly and Disassembly, Eukaryotic Cells, Histones metabolism, Oxidoreductases, N-Demethylating, Heterochromatin genetics, Transcription, Genetic
- Published
- 2008
- Full Text
- View/download PDF
32. Science and technology in South Africa: regional innovation hub or passive consumer?
- Author
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Kahn MJ and Reddy BD
- Subjects
- Economics history, Economics legislation & jurisprudence, Empirical Research, History, 20th Century, Social Change history, South Africa ethnology, Culture, Education economics, Education history, Education legislation & jurisprudence, Research economics, Research education, Research history, Research legislation & jurisprudence, Science economics, Science education, Science history, Science legislation & jurisprudence, Technology economics, Technology education, Technology history, Technology legislation & jurisprudence
- Published
- 2001
33. A three-dimensional finite analysis of adaptive remodelling in the proximal femur.
- Author
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Stülpner MA, Reddy BD, Starke GR, and Spirakis A
- Subjects
- Humans, Adaptation, Physiological, Bone Remodeling physiology, Femur physiology, Models, Biological
- Abstract
A finite element analysis of adaptive bone remodelling in the proximal femur is presented. The use of a three-dimensional model permits a realistic representation of femur geometry, and also allows the possibility of examining the effects of fully three-dimensional loading situations. The long-term pattern of remodelling shows a realistic evolution of density distribution, with a tendency towards a steady state, though the simplified load cases used to model gait are not sufficient to predict the formation of the cortical shell.
- Published
- 1997
- Full Text
- View/download PDF
34. Pathogenicity of Alternaria alternata and its antibody production in experimental animals.
- Author
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Reddy BD, Kelley DC, Minocha HC, and Anthony HD
- Subjects
- Animals, Antibodies, Fungal analysis, Autopsy, Guinea Pigs, Injections, Intradermal, Injections, Intraperitoneal, Mitosporic Fungi immunology, Precipitin Tests, Rabbits, Antibody Formation, Mitosporic Fungi pathogenicity, Mycoses immunology
- Published
- 1974
- Full Text
- View/download PDF
35. Epidermolysis Bullosa.
- Author
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Sobhanadri C and Reddy BD
- Published
- 1966
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