7 results on '"Raymond L. Dunn"'
Search Results
2. Pycro-Manager: open-source software for customized and reproducible microscope control
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Mark A. Tsuchida, Bin Yang, Shalin B. Mehta, Wiebke Jahr, Raymond L. Dunn, Wei Ouyang, Grace Zhang, Michael W. Anderson, Douglas P. Shepherd, Nico Stuurman, Ryan Mei, Jay R. Thiagarajah, Henry Pinkard, Kevin W. Eliceiri, Bin Li, Bryant B. Chhun, Nicholas M. Anthony, Laura Waller, Ivan Ivanov, Emma Lundberg, Loic Royer, Saul Kato, and Ian Hunt-Isaak
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Microscopy ,Microscope ,business.industry ,Computer science ,Data Collection ,Control (management) ,Cell Biology ,Open source software ,Biochemistry ,Article ,law.invention ,law ,Programming Languages ,Software engineering ,business ,Molecular Biology ,Software ,Biotechnology - Published
- 2021
3. The TRPV Channel OSM-9 is Required Non-Cell Autonomously for Sleep-Dependent Olfactory Memory
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Kelli L. Benedetti, Mashel Fatema A. Saifuddin, Julia M. Miller, Rashmi Chandra, Kevin Daigle, Alec Chen, Christine Lin, Angel Garcia, Burhanuddin Calcuttawala, Angelica Tovar, Jackson Borchardt, Raymond L. Dunn, Julia A. Kaye, Saul Kato, Bo Zhang, Maria E. Gallegos, Torsten Wittmann, and Noelle D. L’Etoile
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Transient receptor potential channel ,medicine.anatomical_structure ,TRPV5 ,OSM-9 ,medicine ,Sensory system ,Memory consolidation ,Olfactory memory ,Biology ,Neuroscience ,TRPV ,Sensory neuron - Abstract
Memory, defined as an alteration in behavior towards a stimulus that follows as a consequence of experience, arises when a sensory stimulus is encountered at the same time that the animal experiences a negative or positive internal state. How this coincident detection of external and internal stimuli stably alters responses to the external stimulus is still not fully understood, especially in the context of an intact animal. One barrier to understanding how an intact biological circuit changes is knowing what molecular processes are required to establish and maintain the memory. The optically accessible and compact nervous system ofC. elegansprovides a unique opportunity to examine these processes.C. eleganscan remember an odor such as butanone when it is paired with a single negative experience and the transient receptor potential (TRP) OSM-9/TRPV5/TRPV6 channel is known to be required for this memory. The multiple gating mechanisms of TRPV channels give them the potential to be the coincidence detectors required to integrate internal state and external stimuli. Here, we report that this TRPV channel is also required for acquisition and possibly consolidation of sleep-dependent, long-term memory of butanone. We find that in the anterior ganglion, endogenous GFP-tagged OSM-9 is expressed in the paired AWA olfactory neurons, the ASH nociceptive neuron pair, the mechanosensory OLQ tetrad, and the paired ADF and ADL sensory neurons. In these cells, OSM-9 protein is concentrated in the sensory endings, dendrites, and cell bodies, but excluded from the neurites in the nerve ring. In the tail, OSM-9 is expressed in the nociceptive phasmid neurons PHA and PHB, possibly PQR as well as PVP. In the midbody, it is possibly expressed in the mechanosensitive PVD neuron. It is notably absent from the AWC pair that are required for butanone attraction. Chronic loss of OSM-9 in a subset of ciliated neurons that do not include AWA interferes with consolidation but not learning. Because OSM-9 is expressed and required in sensory neurons that are not needed for butanone chemosensory behavior, two interpretations are possible. The first, is that OSM-9 loss leads to gain of function or neomorphic behavior of these cells that are extrinsic to the primary sensory circuit and their new activity interferes with acquisition and consolidation of memory. The second is that loss of OSM-9 leads to a loss of function phenotype in which the wild type function of these cells is diminished and this function is required for memory consolidation.Author summaryHow organisms learn from their environment and keep these memories for the long term ensures their survival. There is much known about the regions of the brain and the various proteins that are essential for memory, yet the exact molecular mechanisms and dynamics required are not known. We aimed to understand the genetics that underlie memory formation. We tested a gene that encodes a transient potential receptor channel vanilloid channel, which is similar to the channels we have that sense spicy foods and other harmful cues. Our studies have shown that this gene is required for the animal to be able to acquire and perhaps consolidate olfactory memory. This protein is not expressed in the sensory neurons that respond to the odor that is memorized or in other downstream interneurons in the odor-sensation circuit, but it is expressed in a distinct set of sensory neurons. This indicates that long-term memory involves wild type behavior of a wider array of sensory neurons than is required for the primary sensation. These channels are also implicated in neurological disorders where memory is affected, including Alzheimer’s disease. Understanding how memory formation is affected by cells outside the memory circuit might provide testable hypothesis about what goes awry in Alzheimer’s disease.
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- 2020
4. Sleep is required for odor exposure to consolidate memory and remodel olfactory synapses
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Rashmi Chandra, Fatima Farah, Fernando Muñoz-Lobato, Anirudh Bokka, Kelli L. Benedetti, Chantal Brueggemann, Fatema Saifuddin, Julia M. Miller, Joy Li, Eric Chang, Aruna Varshney, Vanessa Jimenez, Anjana Baradwaj, Cibelle Nassif, Sara Alladin, Kristine Andersen, Angel J. Garcia, Veronica Bi, Sarah K. Nordquist, Raymond L. Dunn, Kateryna Tokalenko, Emily Soohoo, Vanessa Garcia, Sukhdeep Kaur, Malcolm Harris, Fabiola Briseno, Brandon Fung, Andrew Bykov, Hazel Guillen, Decklin Byrd, Emma Odisho, Bryan Tsujimoto, Alan Tran, Alex Duong, Kevin C. Daigle, Rebekka Paisner, Carlos E. Zuazo, Matthew A. Churgin, Christopher Fang-Yen, Martina Bremer, Saul Kato, Noëlle D. L’Étoile, and Miri K. VanHoven
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medicine.anatomical_structure ,Odor ,Interneuron ,Period (gene) ,medicine ,Memory consolidation ,Neuron ,Biology ,Inhibitory postsynaptic potential ,Neuroscience ,Sleep in non-human animals - Abstract
SUMMARYAnimals with complex nervous systems demand sleep for memory consolidation and synaptic remodeling. Here we show that though theCaenorhabditis elegansnervous system has a limited number of neurons, sleep is necessary for both processes. In addition, it is unclear in any system if sleep collaborates with experience to alter synapses between specific neurons and whether this ultimately affects behavior.C. elegansneurons have defined connections and well-described contributions to behavior. We show that spaced odor-training and post-training sleep induce long-term memory. Memory consolidation, but not acquisition, requires a pair of interneurons, the AIYs, which play a role in odor-seeking behavior. In worms that consolidate memory, both sleep and odor conditioning are required to diminish inhibitory synaptic connections between the AWC chemosensory neurons and the AIYs. Thus, we demonstrate in a living organism that sleep is required for events immediately after training that drive memory consolidation and alter synaptic structures.
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- 2020
5. minimo: a linked data and metadata storage system for small labs
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Raymond L. Dunn, Jackson Borchardt, and Saul Kato
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Metadata ,Database ,Computer science ,business.industry ,Computer data storage ,Linked data ,computer.software_genre ,business ,computer - Published
- 2021
6. Kappa opioid receptors regulate hippocampal synaptic homeostasis and epileptogenesis
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Victor R. Santos, Daniel T.S. Pak, Megan N. Huizenga, Patrick A. Forcelli, Stefano Vicini, Robert Hammack, Bridget N. Queenan, Raymond L. Dunn, and Yang Feng
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0301 basic medicine ,Male ,Narcotic Antagonists ,Convulsants ,Hippocampal formation ,Epileptogenesis ,Hippocampus ,Receptors, G-Protein-Coupled ,Synapse ,Rats, Sprague-Dawley ,Mice ,0302 clinical medicine ,Picrotoxin ,Cells, Cultured ,Neurons ,medicine.anatomical_structure ,Neurology ,Disks Large Homolog 4 Protein ,Narcotics ,Central nervous system ,Green Fluorescent Proteins ,Synaptophysin ,Tetrodotoxin ,Biology ,Transfection ,κ-opioid receptor ,Article ,03 medical and health sciences ,medicine ,Kindling, Neurologic ,Animals ,Epilepsy ,Dose-Response Relationship, Drug ,Dentate gyrus ,Receptors, Opioid, kappa ,Tumor Suppressor Proteins ,Embryo, Mammalian ,Rats ,Repressor Proteins ,Disease Models, Animal ,030104 developmental biology ,nervous system ,Synaptic plasticity ,Synapses ,Pentylenetetrazole ,Central Nervous System Stimulants ,Neurology (clinical) ,Neuroscience ,030217 neurology & neurosurgery ,Homeostasis - Abstract
SummaryObjective Homeostatic synaptic plasticity (HSP) serves as a gain control mechanism at central nervous system (CNS) synapses, including those between the dentate gyrus (DG) and CA3. Improper circuit control of DG-CA3 synapses is hypothesized to underlie epileptogenesis. Here, we sought to (1) identify compounds that preferentially modulate DG-CA3 synapses in primary neuronal culture and (2) determine if these compounds would delay or prevent epileptogenesis in vivo. Methods We previously developed and validated an in vitro assay to visualize the behavior of DG-CA3 synapses and predict functional changes. We used this “synapse-on-chip” assay (quantification of synapse size, number, and type using immunocytochemical markers) to dissect the mechanisms of HSP at DG-CA3 synapses. Using chemogenetic constructs and pharmacological agents we determined the signaling cascades necessary for gain control at DG-CA3 synapses. Finally, we tested the implicated cascades (using kappa opioid receptor (OR) agonists and antagonists) in two models of epileptogenesis: electrical amygdala kindling in the mouse and chemical (pentylenetetrazole) kindling in the rat. Results In vitro, synapses between DG mossy fibers (MFs) and CA3 neurons are the primary homeostatic responders during sustained periods of activity change. Kappa OR signaling is both necessary and sufficient for the homeostatic elaboration of DG-CA3 synapses, induced by presynaptic DG activity levels. Blocking kappa OR signaling in vivo attenuates the development of seizures in both mouse and rat models of epilepsy. Significance This study elucidates mechanisms by which synapses between DG granule cells and CA3 pyramidal neurons undergo activity-dependent homeostatic compensation, via OR signaling in vitro. Modulation of kappa OR signaling in vivo alters seizure progression, suggesting that breakdown of homeostatic closed-loop control at DG-CA3 synapses contributes to seizures, and that targeting endogenous homeostatic mechanisms at DG-CA3 synapses may prove useful in combating epileptogenesis.
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- 2017
7. Divergent effects of levetiracetam and tiagabine against spontaneous seizures in adult rats following neonatal hypoxia
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Daniel T.S. Pak, Raymond L. Dunn, Bridget N. Queenan, and Patrick A. Forcelli
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0301 basic medicine ,Male ,Levetiracetam ,Tiagabine ,medicine.medical_treatment ,Electroencephalography ,Pharmacology ,Epileptogenesis ,03 medical and health sciences ,Epilepsy ,0302 clinical medicine ,Seizures ,Prohibitins ,medicine ,Animals ,Rats, Long-Evans ,Hypoxia ,medicine.diagnostic_test ,business.industry ,Brain ,Hypoxia (medical) ,medicine.disease ,Disease Models, Animal ,030104 developmental biology ,Anticonvulsant ,Neurology ,Animals, Newborn ,Phenobarbital ,Anticonvulsants ,Neurology (clinical) ,medicine.symptom ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Animal models are valuable tools for screening novel therapies for patients who suffer from epilepsy. However, a wide array of models are necessary to cover the diversity of human epilepsies. In humans, neonatal hypoxia (or hypoxia-ischemia) is one of the most common causes of epilepsy early in life. Hypoxia-induced seizures (HS) during the neonatal period can also lead to spontaneous seizures in adulthood. This phenomenon, i.e., early-life hypoxia leading to adult epilepsy - is also seen in experimental models, including rats. However, it is not known which anti-seizure medications are most effective at managing adult epilepsy resulting from neonatal HS. Here, we examined the efficacy of three anti-seizure medications against spontaneous seizures in adult rats with a history of neonatal HS: (1) phenobarbital (PHB), the oldest epilepsy medicine still in use today; (2) levetiracetam (LEV); and (3) tiagabine (TGB). Both LEV and TGB are relatively new anticonvulsant drugs that are ineffective in traditional seizure models, but strikingly effective in other models. We found that PHB and LEV decreased seizures in adult rats with a history of HS, whereas TGB exacerbated seizures. These divergent drug effects indicate that the HS model may be useful for differentiating the clinical efficacy of putative epilepsy therapies.
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- 2017
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