12 results on '"Raymond, Cesaire"'
Search Results
2. Research challenges and opportunities in the Caribbean area: first bibliometric study in the French West Indies, from 1989 to 2018
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Cédric Contaret, Raymond Cesaire, Jacqueline Deloumeaux, Rémi Neviere, Dabor Resiere, André Cabie, Emmanuelle Sylvestre, Clarisse Joachim, and Moustapha Drame
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collaboration indicator ,bibliometrics ,caribbean region ,guadeloupe ,martinique ,Medicine ,Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
Objective. To analyze, describe, and quantify the collaborations and scientific output of the two university teaching hospitals of Martinique and Guadeloupe, at the regional, national, and international level. Methods. A bibliometrics analysis was performed from the international databases Web of Science and PubMed, for the period from 1989 to 2018, inclusive (30 years). Three types of bibliometric indicators were used, namely quantitative indicators, performance indicators, and organization-specific indicators. Affiliations of the first and last authors were identified from PubMed. Results. Between 1989 and 2018, a total of 1 522 indexed articles were published with at least one author affiliated to either the University Hospital of Martinique (n = 827) or the University Hospital of Guadeloupe (n = 685). The majority of articles were in category Q1 (35.8% for Martinique and 35.2% for Guadeloupe). In Martinique, over the last 30 years, the three main research areas have been clinical neurology, ophthalmology, and surgery, together representing 28.7% of all research areas, with the highest number of articles published in the field of clinical neurology (n = 81). In the University Hospital of Guadeloupe, the area of hematology was largely represented, with 79 articles published. For both hospitals, the first and last authors of the articles published were mainly from mainland France. Conclusions. This quantitative analysis shows the development of medical and scientific research in Martinique and Guadeloupe over the last three decades, as well as the extent of their collaborative partnerships at the national and international levels.
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- 2021
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3. Genotype distribution of cervical HPV among Caribbean women in a population-based study in Martinique: The DEPIPAPUFR study.
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Fatiha Najioullah, Marie-José Dorival, Clarisse Joachim, Christiane Dispagne, Jonathan Macni, Sylvie Abel, Caroline Sulpicy, Huguette Charpentier-Baltide, Danièle Sainte-Rose, Béatrice Salomon-Frechou, Moustapha Dieye, Jacqueline Véronique-Baudin, Maurice Pré, Maurice Marquet, Gaëlle Wan-Ajouhu, Eustase Janky, Didier Riethmuller, Raymond Cesaire, and DEPIPAPUFR study group
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Medicine ,Science - Abstract
The Caribbean ranks seventh among the world regions most affected by cervical cancer. HPV-prevalence and genotype distributions also differ from regions. Knowledge of HPV genotype profiles is important for patients care and HPV vaccination implementation. The objective of this study was to describe HPV genotype distribution and risk factors in a population-based cohort of women in Martinique. In this study, 1312 women were included and underwent cervical cancer screening with successful sample collection between 2009 and 2014. Sociodemographic and clinical variables were recorded. Cytological examination of cervical vaginal smear was performed and classified(Bethesda). Detection of HPV DNA was performed with the PapilloCheck© Kit from Greiner Bio-one. Genotypes were analyzed for18 high-risk HPV (hrHPV) and 6low-risk HPV(lrHPV) types. A total of 1075 women were included with a mean age of 49.1±10.5 years. HPV prevalence was 27.6% (297/1075) with 19.4% (209/1075) women with only hrHPV, 5.3% (57/1075) with only lrHPV. Multiple infections (hrHPV/lrHPV) were detected in 31/240 cases of hrHPV (12.9%). A total of 353 hrHPV genotypes were analyzed; the most common HPV types were HPV51 (11.0%), HPV68 (10.8%), HPV53 (9.1%) and HPV 52 (7.1%). HPV16 and HPV18 represented respectively 4.8% and 4.0% of hrHPV genotypes. Abnormal cytology was observed in 34 cases (3.2%), with 14 ASCUS (1.3%), 10 LSIL (0.9%), 5 HSIL (0.5%), 3 ASC-H (0.3%) and 2 AGC (0.2%). Fifteen (44.1%) were hrHPV and 4 (14.7%) lrHPV; 7 cases of hrPHV were in the age-group 25-34 years. Among 1041cases of normal cytology, 225 had positive hrHPV detection (21.6%). This is the first population-based study of HPV profiles in our country, and we found a high prevalence of hrHPV. The most common genotypes were HPV51, 68, 53. These results could serve for cancer vaccination strategies and HPV surveillance in Martinique.
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- 2021
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4. The effects of chikungunya virus infection on people living with HIV during the 2014 Martinique outbreak.
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Mathilde Pircher, Edwin Pitono, Sandrine Pierre-François, Sabine Molcard, Lauren Brunier-Agot, Laurence Fagour, Fatiha Najioullah, Raymond Cesaire, Sylvie Abel, Lise Cuzin, and André Cabié
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Medicine ,Science - Abstract
Our objective was to describe the clinical presentation of chikungunya virus (CHIKV) infection in patients living with HIV (PLHIV) during the 2014 Martinique outbreak. During the outbreak and the 6 following months, all PLHIV coming in our unit for a medical evaluation answered questions about potential CHIKV related symptoms, and had blood tests to assess the diagnosis. For patients coming in at the acute phase of infection, we are able to provide and analyze CD4+, CD8+ T-cells and HIV viral load evolution before, during and after CHIK infection. Among the 1 003 PLHIV in care in the center at the time of the outbreak, 188 (94 men and 94 women) had confirmed (following the WHO definition) CHIKV infection. Clinical presentation was common in 63% of the cases, severe and atypical forms were scarce. During the acute phase, CD4+ and CD8+ T-cells (evaluated in 30 PLHIV, 15 men and 15 women) absolute numbers dropped significantly, but returned to pre-CHIKV values after the acute phase. Reassuringly, CD4 and CD8 T cells proportions did not decrease during the acute phase. CHIKV infection had no significant impact on this anti-retroviral treated population.
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- 2020
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5. Predictors of abnormal cytology among HPV-infected women in remote territories of French Guiana
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Antoine Adenis, Valentin Dufit, Maylis Douine, Jerome Ponty, Laure Bianco, Fatiha Najioullah, Odile Kilié, Dominique Catherine, Nadia Thomas, Jean Luc Deshayes, Paul Brousse, Gabriel Carles, Claire Grenier, Vincent Lacoste, Vincent Molinie, Raymond Cesaire, and Mathieu Nacher
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Gynecology and obstetrics ,RG1-991 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Cervical cancer prevention using cervical cytology is insufficiently sensitive, a significant proportion of HPV-infected women having normal cytology. The objective of the present study was to try to identify factors associated with abnormal cytology in HPV-infected women living in remote areas of French Guiana. Methods A study was conducted in women aged 20–65 years having HPV infections confirmed by HPV DNA detection using the GREINER-BIO-ONE kit. In addition to HPV testing, cytology was performed and classified as normal or abnormal. Demographic and life history variables, and infecting genotypes were compared between the normal and abnormal cytology groups. Results None of the demographic and life history variables were associated with cytology results. HPV genotype 53 was significantly associated with absence of cytological abnormalities whereas HPV 52, 58, 16 and perhaps 33 and 66 were independently associated with a greater risk of cytological abnormalities. When grouping HPV genotypes in different species, only species 9 (HPV 16, 31, 33, 35, 52, 58, 67) was significantly associated with abnormal cytology AOR = 5.1 (95% CI = 2.3–11.2), P
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- 2018
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6. The singular epidemiology of HPV infection among French Guianese women with normal cytology
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Antoine Adenis, Valentin Dufit, Maylis Douine, Fatiha Najioullah, Vincent Molinie, Dominique Catherine, Odile Kilié, Nadia Thomas, Jean Luc Deshayes, Paul Brousse, Hatem Ben Amor, Remy Pignoux, Gabriel Carles, Claire Grenier, Vincent Lacoste, Raymond Cesaire, and Mathieu Nacher
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Human papillomavirus ,Genotype ,Normal cytology ,Prevalence ,French Guiana ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background In French Guiana, cervical cancer is the second most frequent cancer in females. The objective of the present study was to describe the prevalence of HPV infections in women with normal cervical cytology living in the remote villages of French Guiana. Methods Before the study, the study team communicated in the remote villages on the importance of screening. All women from the target population were offered to participate. They signed informed consent during inclusion and then had a concomitant HPV-test and cervical smear. Only women with normal cytology and a good quality smear were analyzed. The detection of HPV-DNA was performed using the GREINER-BIO-ONE kit. Results Overall, 27.2% of women with normal cervical cytology had a positive HPV-test. There was a U-shaped evolution of prevalence with women over 50 years having the highest HPV prevalence, followed by the 20 to 29 years group. The most prevalent HPV genotypes were HPV 53(3.52%), 68(3.33%), 52(2.59%), 31(2.22%) and 16 (1.85%). The proportion of HPV 16 among HPV-infected women was 6.8%. Conclusions HPV prevalence in cytologically normal women was very high. The most prevalent genotypes were very different from what is usually described in the world, and notably in South America.
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- 2017
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7. Temporal trends in Human T-Lymphotropic virus 1 (HTLV-1) associated myelopathy/tropical spastic paraparesis (HAM/TSP) incidence in Martinique over 25 years (1986-2010).
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Stephane Olindo, Severine Jeannin, Martine Saint-Vil, Aissatou Signate, Mireille Edimonana-Kaptue, Julien Joux, Harold Merle, Pascale Richard, Samuel Granjeaud, Philippe Cabre, Didier Smadja, Raymond Cesaire, and Agnes Lezin
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
Human T-lymphotropic virus type 1 (HTLV-1) has been discovered in 1980 and has been linked to tropical spastic paraparesis (HAM/TSP) in 1985 in Martinique. There is no data on HAM/TSP incidence trends. We report, in the present work, the temporal trends incidence of HAM/TSP in Martinique over 25 years.Martinique is a Caribbean French West Indies island deserved by a unique Neurology Department involved in HAM/TSP diagnosis and management. A registry has been set up since 1986 and patients diagnosed for a HAM/TSP were prospectively registered. Only patients with a definite HAM/TSP onset between 1986 and 2010 were included in the present study. The 25-year study time was stratified in five-year periods. Crude incidence rates with 95% confidence interval (95%CI) were calculated using Poisson distribution for each period. Age-standardized rates were calculated using the direct method and the Martinique population census of 1990 as reference. Standardized incidence rate ratios with 95% CIs and P trends were assessed from simple Poisson regression models. Number of HTLV-1 infection among first-time blood donors was retrospectively collected from the central computer data system of the Martinique blood bank. The HTLV-1 seroprevalence into this population has been calculated for four 5-year periods between 1996 and 2015.Overall, 153 patients were identified (mean age at onset, 53+/-13.1 years; female:male ratio, 4:1). Crude HAM/TSP incidence rates per 100,000 per 5 years (95%CI) in 1986-1990, 1991-1995, 1996-2000, 2001-2005 and 2006-2010 periods were 10.01 (6.78-13.28), 13.02 (9.34-16.70), 11.54 (8.13-14.95), 4.27 (2.24-6.28) and 2.03 (0.62-3.43). Age-standardized 5-year incidence rates significantly decreased by 69% and 87% in 2001-2005 and 2006-2010 study periods. Patients characteristics did not differ regarding 1986-2000 and 2001-2010 onset periods. Between 1996-2000 and 2011-2015 study periods, the HTLV-1 seroprevalence significantly decreased by 63%.Martinique faces a sudden and rapid decline of HAM/TSP incidence from 2001 in comparison to 1986-2000 periods. Reduction of HTLV-1 seroprevalence, that may result from transmission prevention strategy, could account for HAM/TSP incidence decrease.
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- 2018
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8. Evaluation of different serological assays for early diagnosis of leptospirosis in Martinique (French West Indies).
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Christophe Courdurie, Yohann Le Govic, Pascale Bourhy, Dorothee Alexer, Karine Pailla, Rafaelle Theodose, Raymond Cesaire, Jacques Rosine, Patrick Hochedez, and Claude Olive
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
Leptospirosis is a potentially life-threatening but curable zoonosis whose prognosis depends on accurate and timely diagnosis. Because of its non-specific clinical presentation, laboratory testing is essential to confirm the diagnosis. Here, we aimed to assess the performance of two enzyme-linked immunosorbent assays (ELISAs) (ELISA Serion and ELISA-Hb Pasteur) and one immunodot (GenBio) using quantitative PCR (qPCR) as gold standard, instead of the traditional microscopic agglutination test, for the diagnosis of acute leptospirosis in an endemic area.Between January 2011 and December 2012, a total of 122 patients were diagnosed with leptospirosis, as confirmed by qPCR at the University Hospital of Martinique. Among them, 103 had at least one serum sample available for analysis. Performance of each serological assay was evaluated according to days' post onset of symptoms (DPO) and local species diversity (which included L. santarosai, L. interrogans, L. kirschneri, L. borgpetersenii, L. noguchii, and L. kmetyi). Several thresholds were tested to optimize accuracy. When considering the manufacturer's threshold, the sensitivity of ELISA Serion, ELISA-Hb Pasteur and GenBio immunodot was 75%, 67% and 64%, while specificity was 92%, 98% and 100%, respectively. Moreover, the threshold optimization allowed a significant improvement in specificity for the ELISA Serion from 92% to 99% (p
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- 2017
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9. Reemergence of Dengue Virus Type 4, French Antilles and French Guiana, 2004–2005
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Philippe Dussart, Anne Lavergne, Gisèle Lagathu, Vincent Lacoste, Jenny Martial, Jacques Morvan, and Raymond Cesaire
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Dengue-4 ,phylogeny ,French Antilles ,French Guiana ,dispatch ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
After 10 years of absence, dengue virus type 4 (DENV-4) has recently reemerged in Martinique, Guadeloupe, and French Guiana. Phylogenetic analyses of strains isolated from 2004 to 2005 showed that they belong to DENV-4 genotype II, but to a different cluster than strains isolated from 1993 to 1995.
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- 2006
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10. Bibliometrics indicators in the Caribbean islands: French West Indies authorship analyzed from 1989 to 2018
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CEDRIC CONTARET, Raymond CESAIRE, Jacqueline DELOUMEAUX, Rémi NEVIERE, Dabor RESIERE, André CABIE, Emmanuelle SYLVESTRE, Clarisse JOACHIM, and Moustapha DRAME
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BackgroundBibliometrics are mathematical methods used in various scientific domains to measure scientific output based on the number of publications, the prestige of the journal, and the number of citations of the research after its publication. To the best of our knowledge, only a few bibliometric studies have been performed in the Caribbean or the French West Indies. The aim of this study was to quantify the collaborations and scientific output between the two university teaching hospitals of Martinique and Guadeloupe, at the regional, national and international level.MethodA bibliometrics analysis was performed from the international databases Web of Science and PubMed, for the period from 1989 to 2018 inclusive (30 years). Three types of bibliometric indicators were used, namely quantitative indicators, performance indicators, and organisation-specific indicators. Affiliations of the first and last authors were identified from PubMed. Between 2014 and 2018, we recorded the affiliations of all authors (from the first to the last author) who collaborated on an article with the University Hospital of either Martinique of GuadeloupeResultsBetween 1989 and 2018, a total of 1,522 indexed articles were published with at least one author affiliated to either the University Hospital of Martinique (N=827) or the University Hospital of Guadeloupe (N=685). The majority of articles for both hospitals were in category Q1 (35.8% for Martinique, and 35.2% for Guadeloupe). In Martinique, over the last 30 years, the 3 main research areas have been clinical neurology, ophthalmology and surgery, together representing 28.7% of all research areas, with the highest number of articles published in the field of clinical neurology (n=81). In the University Hospital of Guadeloupe, the area of hematology was largely represented, with 79 articles published. For both hospitals, the first and last authors of the articles published were mainly from mainland France, and from either Martinique or Guadeloupe university hospitalConclusionThis quantitative and qualitative analysis shows the development of medical and scientific research in Martinique and Guadeloupe over the last three decades, as well as the extent of their collaborative partnerships at national and international level.
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- 2019
11. Zika emergence in the French Territories of America and description of first confirmed cases of Zika virus infection on Martinique, November 2015 to February 2016
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Elise, Daudens-Vaysse, Martine, Ledrans, Noellie, Gay, Vanessa, Ardillon, Sylvie, Cassadou, Fatiha, Najioullah, Isabelle, Leparc-Goffart, Dominique, Rousset, Cécile, Herrmann, Raymond, Cesaire, Marianne, Maquart, Olivier, Flusin, Séverine, Matheus, Patricia, Huc-Anaïs, Josiane, Jaubert, Anne, Criquet-Hayot, Bruno, Hoen, Felix, Djossou, Corinne, Locatelli-Jouans, Alain, Blateau, Anne-Marie, McKenzie, Mathilde, Melin, Patrick, Saint-Martin, Frédérique, Dorléans, Claudine, Suivant, Luisiane, Carvalho, Marion, Petit-Sinturel, Audrey, Andrieu, Harold, Noël, Alexandra, Septfons, Anne, Gallay, Marie-Claire, Paty, Laurent, Filleul, André, Cabié, Agence régionale de santé (ARS) de Martinique (ARS Martinique), Cellule Inter Régionale d'Epidémiologie des Antilles - Guyane, Institut de Veille Sanitaire (INVS), Laboratoire de Virologie-Immunologie, Centre Hospitalier Universitaire de Martinique [Fort-de-France, Martinique], French National Reference Centre for Arboviruses, Institut de Recherche Biomédicale des Armées (IRBA), Institut Pasteur de la Guyane, Réseau International des Instituts Pasteur (RIIP), CHU Pointe-à-Pitre/Abymes [Guadeloupe], Laboratoire d'Analyses Médicales, Clinique Saint Paul, URML Martinique, Dermatologie et Maladies infectieuses [Pointe-à-Pitre], CHU Pointe-à-Pitre/Abymes [Guadeloupe] -Centre de Gestion du Risque Infectieux Nosocomial [Pointe-à-Pitre] (CGRIN), Centre d'Investigation Clinique Antilles-Guyane (CIC - Antilles Guyane), Université des Antilles et de la Guyane (UAG)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pointe-à-Pitre/Abymes [Guadeloupe] -CHU de Fort de France-Centre Hospitalier Andrée Rosemon [Cayenne, Guyane Française], Agence Régionale de Santé Guyane (ARS Guyane), Agence Régionale de la Santé (ARS), Agence régionale de santé Guadeloupe (ARS), Cellule Inter Régionale d'Epidémiologie Océan Indien, the Zika Surveillance Working Group, ADENIS, ANTOINE, IRBA Armed Forces Biomedical Research Institute, Agence Régionale de Santé de Guyane, Institut National de Veille Sanitaire, Institut national de veille sanitaire, Animal, Santé, Territoires, Risques et Ecosystèmes (UMR ASTRE), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA), Département Systèmes Biologiques (Cirad-BIOS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Cellule interrégionale d'épidémiologie Antilles-Guyane [CIRE], CIRE Antilles-Guyane - Gourbeyre, CHU de la Martinique [Fort de France], Unité de Virologie, Institut de Médecine Tropicale du Service de Santé des Armées, Institut pluridisciplinaire de recherche appliquée dans le domaine du génie pétrolier (IPRADDGP), Université de Pau et des Pays de l'Adour (UPPA)-Centre National de la Recherche Scientifique (CNRS), Service de Maladies Infectieuses et Tropicales [Fort-de-France, Martinique], CHU de la Martinique [Fort de France]-Hôpital Pierre Zobda-Quitman [CHU de la Martinique], CHU de la Martinique [Fort de France]-Centre Hospitalier Universitaire de Martinique [Fort-de-France, Martinique], Centre de Recherche et de Veille sur les Maladies Émergentes dans l'Océan Indien (CRVOI), Université de La Réunion (UR), Institut de Recherche Biomédicale des Armées [Antenne Marseille] (IRBA), Université Henri Poincaré - Nancy 1 (UHP), Unité des Maladies Infectieuses et Tropicales (UMIT), Centre Hospitalier Andrée Rosemon [Cayenne, Guyane Française], Cellule Interrégionale d'Epidémiologie Antilles-Guyane, Service de santé publique et d'épidémiologie, Université Paris-Sud - Paris 11 (UP11)-Assistance publique - Hôpitaux de Paris (AP-HP) (APHP)-Hôpital Bicêtre, Cellule Interrégionale d'Epidémiologie, and CHU de Fort de France-Centre Hospitalier Andrée Rosemon [Cayenne, Guyane Française]-CHU Pointe-à-Pitre/Abymes [Guadeloupe] -Institut National de la Santé et de la Recherche Médicale (INSERM)-Université des Antilles et de la Guyane (UAG)
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0301 basic medicine ,Pediatrics ,Pathology ,Epidemiology ,vector-borne infections ,location.country ,medicine.disease_cause ,Communicable Diseases, Emerging ,Disease Outbreaks ,Zika virus ,Dengue fever ,0302 clinical medicine ,[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Maculopapular rash ,Medicine ,030212 general & internal medicine ,Chikungunya ,Guadeloupe ,ComputingMilieux_MISCELLANEOUS ,[SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Zika Virus Infection ,Rash ,French Guiana ,3. Good health ,Population Surveillance ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,RNA, Viral ,medicine.symptom ,Martinique ,medicine.medical_specialty ,030106 microbiology ,03 medical and health sciences ,location ,Zika ,Virology ,Humans ,business.industry ,Public Health, Environmental and Occupational Health ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Sequence Analysis, DNA ,Zika Virus ,biology.organism_classification ,medicine.disease ,[SDV.SPEE] Life Sciences [q-bio]/Santé publique et épidémiologie ,Martinique island ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,business - Abstract
International audience; Following of the emergence of Zika virus in Brazil in 2015, an epidemiological surveillance system was quickly implemented in the French overseas Territories of America (FTA) according to previous experience with dengue and chikungunya and has detected first cases of Zika. General practitioners and medical microbiologists were invited to report all clinically suspectedcases of Zika, laboratory investigations were systematically conducted (RT-PCR). On 18 December, the first autochthonous case of Zika virus infection was confirmed by RT-PCR on French Guiana and Martinique, indicating introduction of Zika virus inFTA. The viral circulation of Zika virus was then also confirmed on Guadeloupe and Saint-Martin. We report here early findings on 203 confirmed cases of Zika virus infection identified by RT-PCR or seroneutralisation on Martinique Island between 24 November 2015 and 20 January 2016. All cases were investigated. Common clinical signs were observed (maculopapularrash, arthralgia, fever, myalgia and conjunctival hyperaemia) among these patients, but the rash, the foundation of our case definition, may be absent in a significant proportion of patients (16%). These results are important for the implementation of a suspected case definition, the main tool for epidemiological surveillance, in territories that may be affected by ZIKV emergence, including Europe.
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- 2016
12. Nucleotide and amino acid polymorphisms at drug resistance sites in non-B-subtype variants of human immunodeficiency virus type 1
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Bluma G. Brenner, Raymond Cesaire, Shlomo Maayan, Mervi Detorio, Daniela Moisi, Mark A. Wainberg, Haruyo Mori, Takashi Kurimura, Max Essex, and Dan Turner
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medicine.medical_treatment ,DNA Mutational Analysis ,Molecular Sequence Data ,HIV Infections ,Drug resistance ,Biology ,Antiviral Agents ,Virus ,Polymorphism (computer science) ,Genotype ,Drug Resistance, Viral ,medicine ,Humans ,Pharmacology (medical) ,Amino Acids ,Codon ,Pharmacology ,Genetics ,chemistry.chemical_classification ,Protease ,Polymorphism, Genetic ,Nucleotides ,Reverse Transcriptase Polymerase Chain Reaction ,Virology ,Reverse transcriptase ,HIV Reverse Transcriptase ,Amino acid ,Infectious Diseases ,Phenotype ,chemistry ,Amino Acid Substitution ,Codon usage bias ,HIV-1 ,Reverse Transcriptase Inhibitors - Abstract
We have compared nucleotide substitutions and polymorphisms at codons known to confer drug resistance in subtype B strains of human immunodeficiency virus type 1 (HIV-1) with similar substitutions in viruses of other subtypes. Genotypic analysis was performed on viruses from untreated individuals. Nucleotide and amino acid diversity at resistance sites was compared with a consensus subtype B reference virus. Among patients with non-subtype B infections, polymorphisms relative to subtype B were observed at codon 10 in protease (PR). These included silent substitutions (CTC→CTT, CTA, TTA) and an amino acid mutation, L10I. Subtype A viruses possessed a V179I substitution in reverse transcriptase (RT). Subtype G viruses were identified by silent substitutions at codon 181 in RT (TAT→TAC). Similarly, subtype A/G viruses were identified by a substitution at position 67 in RT (GAC→GAT). Subtype C was distinguished by silent substitutions at codons 106 (GTA→GTG) and 219 (AAA→AAG) in RT and codon 48 (GGG→GGA) in PR. Variations relative to subtype B were seen at RT position 215 (ACC→ACT) for subtypes A and A/E. These substitutions and polymorphisms reflect different patterns of codon usage among viruses of different subtypes. However, the existence of different subtypes may only rarely affect patterns of drug resistance-associated mutations.
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- 2004
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