8 results on '"Rasmussen, Andrew J."'
Search Results
2. Structural characterization of the nitrogenase molybdenum-iron protein with the substrate acetylene trapped near the active site
- Author
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Keable, S, Vertemara, J, Zadvornyy, O, Eilers, B, Danyal, K, Rasmussen, A, De Gioia, L, Zampella, G, Seefeldt, L, Peters, J, Keable, Stephen M., Vertemara, Jacopo, Zadvornyy, Oleg A., Eilers, Brian J., Danyal, Karamatullah, Rasmussen, Andrew J., De Gioia, Luca, Zampella, Giuseppe, Seefeldt, Lance C., Peters, John W., Keable, S, Vertemara, J, Zadvornyy, O, Eilers, B, Danyal, K, Rasmussen, A, De Gioia, L, Zampella, G, Seefeldt, L, Peters, J, Keable, Stephen M., Vertemara, Jacopo, Zadvornyy, Oleg A., Eilers, Brian J., Danyal, Karamatullah, Rasmussen, Andrew J., De Gioia, Luca, Zampella, Giuseppe, Seefeldt, Lance C., and Peters, John W.
- Abstract
The biological reduction of dinitrogen (N2) to ammonia is catalyzed by the complex metalloenzyme nitrogenase. Structures of the nitrogenase component proteins, Iron (Fe) protein and Molybdenum-iron (MoFe) protein, and the stabilized complexes these component proteins, have been determined, providing a foundation for a number of fundamental aspects of the complicated catalytic mechanism. The reduction of dinitrogen to ammonia is a complex process that involves the binding of N2followed by reduction with multiple electrons and protons. Electron transfer into nitrogenase is typically constrained to the unique electron donor, the Fe protein. These constraints have prevented structural characterization of the active site with bound substrate. Recently it has been realized that selected amino acid substitutions in the environment of the active site metal cluster (Iron-Mo molybdenum cofactor, FeMo-co) allow substrates to persist even in the resting state. Reported here is a 1.70 Ã crystal structure of a nitrogenase MoFe protein alfa-96Arg -> Gln variant with the alternative substrate acetylene trapped in a channel in close proximity to FeMo-co. Complementary theoretical calculations support the validity of the acetylene interaction at this site and is also consistent with more favorable interactions in the variant MoFe protein compared to the native MoFe protein. This work represents the first structural evidence of a substrate trapped in the nitrogenase MoFe protein and is consistent with earlier assignments of proposed substrate pathways and substrate binding sites deduced from biochemical, spectroscopic, and theoretical studies.
- Published
- 2018
3. Structural characterization of the P1+ intermediate state of the P-cluster of nitrogenase
- Author
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Keable, Stephen M., primary, Zadvornyy, Oleg A., additional, Johnson, Lewis E., additional, Ginovska, Bojana, additional, Rasmussen, Andrew J., additional, Danyal, Karamatullah, additional, Eilers, Brian J., additional, Prussia, Gregory A., additional, LeVan, Axl X., additional, Raugei, Simone, additional, Seefeldt, Lance C., additional, and Peters, John W., additional
- Published
- 2018
- Full Text
- View/download PDF
4. Structural Insights into the Regulation of Electron Transfer in Nitrogenase, and Modulating the Reactivity of the Isolated Iron Molybdenum Cofactor
- Author
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Rasmussen, Andrew J.
- Subjects
Chemistry ,Physical Sciences and Mathematics ,Other Chemistry - Abstract
Nitrogenase, EC: 1.18.6.1 is the enzyme that catalyzes the reduction of dinitrogen to ammonia; this is known as biological nitrogen fixation. Nitrogen fixation is so important to our daily lives, that we utilize approximately 2% of the annual energy produced worldwide to fix nitrogen industrially via the Haber-Bosch process. The industrial process requires a high input of energy in the form of heat (>450��C) and pressure (>200 atm>), while the enzymatic system is performed under ambient conditions. Research invested into understanding the mechanism of this biological catalyst could eventually lead to understanding how nature performs difficult chemical reductions, which could allow researchers to develop catalysts that mimic this enzyme to perform many important reactions, such as nitrogen fixation, much more efficiently than today. Electron transfer in the nitrogenase is only partially understood, and is one of the key elements of understanding the mechanism of nitrogenase. Nitrogenase is composed of two proteins, the Fe protein delivers electrons to the MoFe protein, where N2 binds and is subsequently reduced. The conformational changes that take place upon Fe protein binding were investigated in order to better understand electron transfer within the enzyme. Further, studies were performed which probed the P-cluster, an iron sulfur cluster in the MoFe protein that acts as an intermediate in the electron transfer event, and successfully identified the biologically relevant redox state of the P-cluster, P+1. Other studies were performed which identified several variants of the MoFe protein which were able to accept electrons from a chemical reductant. These variants are the first examples of nitrogenase enzymes able to accept electrons from any source other than Fe protein and shown substrate reduction. These variants pinpoint where nitrogenase is likely to undergo conformational changes to allow electron transfer to the active site of the enzyme. Finally, studies were done on the isolated active site of the protein, the iron molybdenum cofactor to better understand how the active site of nitrogenase works The goal of this thesis is to better understand how electrons travel through nitrogenase, and how they are utilized at the active site, FeMo-cofactor, when they arrive.
- Published
- 2016
5. Fe Protein-Independent Substrate Reduction by Nitrogenase MoFe Protein Variants
- Author
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Danyal, Karamatullah, primary, Rasmussen, Andrew J., additional, Keable, Stephen M., additional, Inglet, Boyd S., additional, Shaw, Sudipta, additional, Zadvornyy, Oleg A., additional, Duval, Simon, additional, Dean, Dennis R., additional, Raugei, Simone, additional, Peters, John W., additional, and Seefeldt, Lance C., additional
- Published
- 2015
- Full Text
- View/download PDF
6. Riding the tiger: Participatory design and concurrent development in the construction of collaborative learning spaces
- Author
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Ryan, Michael, Rasmussen, Andrew J., Ryan, Michael, and Rasmussen, Andrew J.
- Abstract
Web-based learning management systems hold considerable promise in supporting approaches to teaching that are well-informed, both practically and theoretically. Unfortunately, this promise has often remained unrealised, especially in higher education contexts. Various reasons may be proffered including: monolithic approaches to system development, mismatches between software and pedagogic models, or attenuated communication between system developers and practitioners. This paper examines one case study involving the concurrent development (simultaneous deployment and refinement) of a general on-line collaborative tool for students and the co- development of an instructional approach based on authentic constructivist principles. This case study is used to abstract some tentative principles that relate to the effective development of learning management systems. These principles include: * Some pedagogical designs, while productive in terms of student learning, rely on complex interactions that are difficult to support technically. * It is possible to set up conditions for a productive participant-developer dialogue in order to co-inform technical and pedagogical design. * Non-traditional methods of system development are appropriate in order to support innovation, especially if measures are taken to handle the risks involved. The results should be of interest to teachers in higher education, administrators and developers of web-based learning management systems.
- Published
- 2005
7. Structural characterization of the P1+ intermediate state of the P-cluster of nitrogenase.
- Author
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Keable, Stephen M., Zadvornyy, Oleg A., Johnson, Lewis E., Ginovska, Bojana, Rasmussen, Andrew J., Danyal, Karamatullah, Eilers, Brian J., Prussia, Gregory A., LeVan, Axl X., Raugei, Simone, Seefeldt, Lance C., and Peters, John W.
- Subjects
- *
NITROGENASES , *AMMONIA , *BIOLOGICAL systems , *CHARGE exchange , *OXIDATION-reduction reaction - Abstract
Nitrogenase is the enzyme that reduces atmospheric dinitrogen (N2) to ammonia (NH3) in biological systems. It catalyzes a series of single-electron transfers from the donor iron protein (Fe protein) to the molybdenum--iron protein (MoFe protein) that contains the iron--molybdenum cofactor (FeMo-co) sites where N2 is reduced to NH3. The P-cluster in the MoFe protein functions in nitrogenase catalysis as an intermediate electron carrier between the external electron donor, the Fe protein, and the FeMo-co sites of the MoFe protein. Previous work has revealed that the P-cluster undergoes redox-dependent structural changes and that the transition from the all-ferrous resting (PN) state to the two-electron oxidized P2+ state is accompanied by protein serine hydroxyl and backbone amide ligation to iron. In this work, the MoFe protein was poised at defined potentials with redox mediators in an electrochemical cell, and the three distinct structural states of the P-cluster (P2+,P1+, and PN) were characterized by X-ray crystallography and confirmed by computational analysis. These analyses revealed that the three oxidation states differ in coordination, implicating that the P1+ state retains the serine hydroxyl coordination but lacks the backbone amide coordination observed in the P2+ states. These results provide a complete picture of the redox-dependent ligand rearrangements of the three P-cluster redox states. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
8. Structural characterization of the P 1+ intermediate state of the P-cluster of nitrogenase.
- Author
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Keable SM, Zadvornyy OA, Johnson LE, Ginovska B, Rasmussen AJ, Danyal K, Eilers BJ, Prussia GA, LeVan AX, Raugei S, Seefeldt LC, and Peters JW
- Subjects
- Catalysis, Crystallography, X-Ray, Electron Transport, Molybdoferredoxin metabolism, Nitrogenase metabolism, Oxidation-Reduction, Azotobacter vinelandii enzymology, Molybdoferredoxin chemistry, Nitrogenase chemistry, Protein Conformation, Protons
- Abstract
Nitrogenase is the enzyme that reduces atmospheric dinitrogen (N
2 ) to ammonia (NH3 ) in biological systems. It catalyzes a series of single-electron transfers from the donor iron protein (Fe protein) to the molybdenum-iron protein (MoFe protein) that contains the iron-molybdenum cofactor (FeMo-co) sites where N2 is reduced to NH3 The P-cluster in the MoFe protein functions in nitrogenase catalysis as an intermediate electron carrier between the external electron donor, the Fe protein, and the FeMo-co sites of the MoFe protein. Previous work has revealed that the P-cluster undergoes redox-dependent structural changes and that the transition from the all-ferrous resting (PN ) state to the two-electron oxidized P2+ state is accompanied by protein serine hydroxyl and backbone amide ligation to iron. In this work, the MoFe protein was poised at defined potentials with redox mediators in an electrochemical cell, and the three distinct structural states of the P-cluster (P2+ , P1+ , and PN ) were characterized by X-ray crystallography and confirmed by computational analysis. These analyses revealed that the three oxidation states differ in coordination, implicating that the P1+ state retains the serine hydroxyl coordination but lacks the backbone amide coordination observed in the P2+ states. These results provide a complete picture of the redox-dependent ligand rearrangements of the three P-cluster redox states.- Published
- 2018
- Full Text
- View/download PDF
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