123 results on '"Ranford-Cartwright, L."'
Search Results
2. Signalling in malaria parasites – The MALSIG consortium#
- Author
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Doerig C., Baker D., Billker O., Blackman M.J., Chitnis C., Kumar Dhar S., Heussler V., Holder A.A., Kocken C., Krishna S., Langsley G., Lasonder E., Menard R., Meissner M., Pradel G., Ranford-Cartwright L., Sharma A., Sharma P., Tardieux T., Tatu U., and Alano P.
- Subjects
malaria ,Plasmodium ,Toxoplasma ,signalling ,Infectious and parasitic diseases ,RC109-216 - Abstract
Depending on their developmental stage in the life cycle, malaria parasites develop within or outside host cells, and in extremely diverse contexts such as the vertebrate liver and blood circulation, or the insect midgut and hemocoel. Cellular and molecular mechanisms enabling the parasite to sense and respond to the intra- and the extra-cellular environments are therefore key elements for the proliferation and transmission of Plasmodium, and therefore are, from a public health perspective, strategic targets in the fight against this deadly disease. The MALSIG consortium, which was initiated in February 2009, was designed with the primary objective to integrate research ongoing in Europe and India on i) the properties of Plasmodium signalling molecules, and ii) developmental processes occurring at various points of the parasite life cycle. On one hand, functional studies of individual genes and their products in Plasmodium falciparum (and in the technically more manageable rodent model Plasmodium berghei) are providing information on parasite protein kinases and phosphatases, and of the molecules governing cyclic nucleotide metabolism and calcium signalling. On the other hand, cellular and molecular studies are elucidating key steps of parasite development such as merozoite invasion and egress in blood and liver parasite stages, control of DNA replication in asexual and sexual development, membrane dynamics and trafficking, production of gametocytes in the vertebrate host and further parasite development in the mosquito. This article, which synthetically reviews such signalling molecules and cellular processes, aims to provide a glimpse of the global frame in which the activities of the MALSIG consortium will develop over the next three years.
- Published
- 2009
- Full Text
- View/download PDF
3. Frequent and Persistent, Asymptomatic Plasmodium falciparum Infections in African Infants, Characterized by Multilocus Genotyping
- Author
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Franks, S., Koram, K. A., Wagner, G. E., Tetteh, K., McGuinness, D., Wheeler, J. G., Nkrumah, F., Ranford-Cartwright, L., and Riley, E. M.
- Published
- 2001
4. Real-time PCR assays for detection and quantification of early P. falciparum gametocyte stages
- Author
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Gadalla, AAH, Siciliano, G, Farid, R, Alano, P, Ranford-Cartwright, L, McCarthy, JS, Thompson, J, Babiker, H, Gadalla, AAH, Siciliano, G, Farid, R, Alano, P, Ranford-Cartwright, L, McCarthy, JS, Thompson, J, and Babiker, H
- Abstract
The use of quantitative qRT-PCR assays for detection and quantification of late gametocyte stages has revealed the high transmission capacity of the human malaria parasite, Plasmodium falciparum. To understand how the parasite adjusts its transmission in response to in-host environmental conditions including antimalarials requires simultaneous quantification of early and late gametocytes. Here, we describe qRT-PCR assays that specifically detect and quantify early-stage P. falciparum gametocytes. The assays are based on expression of known early and late gametocyte genes and were developed using purified stage II and stage V gametocytes and tested in natural and controlled human infections. Genes pfpeg4 and pfg27 are specifically expressed at significant levels in early gametocytes with a limit of quantification of 190 and 390 gametocytes/mL, respectively. In infected volunteers, transcripts of pfpeg4 and pfg27 were detected shortly after the onset of blood stage infection. In natural infections, both early (pfpeg4/pfg27) and late gametocyte transcripts (pfs25) were detected in 71.2% of individuals, only early gametocyte transcripts in 12.6%, and only late gametocyte transcripts in 15.2%. The pfpeg4/pfg27 qRT-PCR assays are sensitive and specific for quantification of circulating sexually committed ring stages/early gametocytes and can be used to increase our understanding of epidemiological processes that modulate P. falciparum transmission.
- Published
- 2021
5. The regulatory genome of the malaria vector Anopheles gambiae: integrating chromatin accessibility and gene expression
- Author
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Ruiz, José L., Ranford-Cartwright, L., Gómez-Díaz, Elena, Ruiz, José L., Ranford-Cartwright, L., and Gómez-Díaz, Elena
- Abstract
Anopheles gambiae mosquitoes are primary human malaria vectors, but we know very little about their mechanisms of transcriptional regulation. We profiled chromatin accessibility by the assay for transposase-accessible chromatin by sequencing (ATAC-seq) in laboratory-reared A. gambiae mosquitoes experimentally infected with the human malaria parasite Plasmodium falciparum. By integrating ATAC-seq, RNA-seq and ChIP-seq data, we showed a positive correlation between accessibility at promoters and introns, gene expression and active histone marks. By comparing expression and chromatin structure patterns in different tissues, we were able to infer cis-regulatory elements controlling tissue-specific gene expression and to predict the in vivo binding sites of relevant transcription factors. The ATAC-seq assay also allowed the precise mapping of active regulatory regions, including novel transcription start sites and enhancers that were annotated to mosquito immune-related genes. Not only is this study important for advancing our understanding of mechanisms of transcriptional regulation in the mosquito vector of human malaria, but the information we produced also has great potential for developing new mosquito-control and anti-malaria strategies.
- Published
- 2021
6. The impact of uniform and mixed species blood meals on the fitness of the mosquito vector Anopheles gambiae s.s: does a specialist pay for diversifying its host species diet?
- Author
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LYIMO, I. N., KEEGAN, S. P., RANFORD-CARTWRIGHT, L. C., and FERGUSON, H. M.
- Published
- 2012
- Full Text
- View/download PDF
7. Mating Patterns in Malaria Parasite Populations of Papua New Guinea
- Author
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Paul, R. E. L., Packer, M. J., Walmsley, M., Lagog, M., Ranford-Cartwright, L. C., Paru, R., and Day, K. P.
- Published
- 1995
8. Plasmodium falciparum ookinete invasion of the midgut epithelium of Anopheles stephensi is consistent with the Time Bomb model
- Author
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BATON, L. A. and RANFORD-CARTWRIGHT, L. C.
- Published
- 2004
9. Gametocyte Sex Ratio: The Key to Understanding Plasmodium falciparum Transmission?
- Author
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Tadesse, F.G., Meerstein-Kessel, L., Goncalves, B.P., Drakeley, C., Ranford-Cartwright, L., Bousema, T., Tadesse, F.G., Meerstein-Kessel, L., Goncalves, B.P., Drakeley, C., Ranford-Cartwright, L., and Bousema, T.
- Abstract
Contains fulltext : 202658.pdf (publisher's version ) (Open Access), A mosquito needs to ingest at least one male and one female gametocyte to become infected with malaria. The sex of Plasmodium falciparum gametocytes can be determined microscopically but recent transcriptomics studies paved the way for the development of molecular methods that allow sex-ratio assessments at much lower gametocyte densities. These sex-specific gametocyte diagnostics were recently used to examine gametocyte dynamics in controlled and natural infections as well as the impact of different antimalarial drugs. It is currently unclear to what extent sex-specific gametocyte diagnostics obviate the need for mosquito feeding assays to formally assess transmission potential. Here, we review recent and historic assessments of gametocyte sex ratio in relation to host and parasite characteristics, treatment, and transmission potential.
- Published
- 2019
10. Plasmodium comparative genomics
- Author
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Ranford-Cartwright, L., Gómez-Díaz, Elena, Ranford-Cartwright, L., and Gómez-Díaz, Elena
- Abstract
Malaria is a serious infectious disease caused by unicellular eukaryotic parasites of the genus Plasmodium. Today more than 200 species exist [1], and whole-genome sequence data is available for around 22 species [2]. At least five different Plasmodium species can infect humans, of which Plasmodium falciparum is the major cause of morbidity and mortality worldwide [3]. Other species are specific to vertebrates including rodents, birds and lizards. The parasite moves between vertebrate hosts via the bite of a mosquito, which serves as the definitive host and vector. A parasite species is usually restricted in the number of different vertebrate host species it is able to...
- Published
- 2019
11. Dielectric characterization of Plasmodium falciparum -infected red blood cells using microfluidic impedance cytometry
- Author
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Honrado, C., primary, Ciuffreda, L., additional, Spencer, D., additional, Ranford-Cartwright, L., additional, and Morgan, H., additional
- Published
- 2018
- Full Text
- View/download PDF
12. Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum
- Author
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Miles, A, Iqbal, Zamin, Vauterin, P, Pearson, R, Campino, S, Theron, M, Gould, K, Mead, D, Drury, E, O'Brien, J, Ruano Rubio, V, MacInnis, B, Mwangi, J, Samarakoon, U, Ranford-Cartwright, L, Ferdig, M, Hayton, K, Su, XZ, Wellems, T, Rayner, J, McVean, G, and Kwiatkowski, D
- Subjects
Recombination, Genetic ,Resource ,DNA Copy Number Variations ,Plasmodium falciparum ,Drug Resistance ,Chromosome Mapping ,Genetic Variation ,High-Throughput Nucleotide Sequencing ,Polymorphism, Single Nucleotide ,Meiosis ,INDEL Mutation ,Humans ,Malaria, Falciparum ,Genome, Protozoan - Abstract
The malaria parasite Plasmodium falciparum has a great capacity for evolutionary adaptation to evade host immunity and develop drug resistance. Current understanding of parasite evolution is impeded by the fact that a large fraction of the genome is either highly repetitive or highly variable and thus difficult to analyze using short-read sequencing technologies. Here, we describe a resource of deep sequencing data on parents and progeny from genetic crosses, which has enabled us to perform the first genome-wide, integrated analysis of SNP, indel and complex polymorphisms, using Mendelian error rates as an indicator of genotypic accuracy. These data reveal that indels are exceptionally abundant, being more common than SNPs and thus the dominant mode of polymorphism within the core genome. We use the high density of SNP and indel markers to analyze patterns of meiotic recombination, confirming a high rate of crossover events and providing the first estimates for the rate of non-crossover events and the length of conversion tracts. We observe several instances of meiotic recombination within copy number variants associated with drug resistance, demonstrating a mechanism whereby fitness costs associated with resistance mutations could be compensated and greater phenotypic plasticity could be acquired.
- Published
- 2016
13. The Plasmodium eukaryotic initiation factor-2α kinase IK2 controls the latency of sporozoites in the mosquito salivary glands
- Author
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Zhang, M., Fennell, C., Ranford-Cartwright, L., Sakthivel, R., Gueirard, P., Meister, S., Caspi, A., Doerig, C., Nussenzweig, R. S., Tuteja, R., Sullivan, W. J., Roos, D. S., Fontoura, B. M. A., Menard, R., Winzeler, E. A., and Nussenzweig, V.
- Subjects
QR - Abstract
Sporozoites, the invasive form of malaria parasites transmitted by mosquitoes, are quiescent while in the insect salivary glands. Sporozoites only differentiate inside of the hepatocytes of the mammalian host. We show that sporozoite latency is an active process controlled by a eukaryotic initiation factor-2α (eIF2α) kinase (IK2) and a phosphatase. IK2 activity is dominant in salivary gland sporozoites, leading to an inhibition of translation and accumulation of stalled mRNAs into granules. When sporozoites are injected into the mammalian host, an eIF2α phosphatase removes the PO4 from eIF2α-P, and the repression of translation is alleviated to permit their transformation into liver stages. In IK2 knockout sporozoites, eIF2α is not phosphorylated and the parasites transform prematurely into liver stages and lose their infectivity. Thus, to complete their life cycle, Plasmodium sporozoites exploit the mechanism that regulates stress responses in eukaryotic cells.
- Published
- 2010
14. Signalling in malaria parasites. The MALSIG consortium.
- Author
-
Doerig, C., Baker, D., Billker, O., Blackman, M. J., Chitnis, C., Dhar Kumar, S., Heussler, V., Holder, A. A., Kocken, C., Krishna, S., Langsley, G., Lasonder, E., Menard, R., Meissner, M., Pradel, G., Ranford-Cartwright, L., Sharma, A., Sharma, P., Tardieux, T., Tatu, U., Alano, P., Doerig, C., Baker, D., Billker, O., Blackman, M. J., Chitnis, C., Dhar Kumar, S., Heussler, V., Holder, A. A., Kocken, C., Krishna, S., Langsley, G., Lasonder, E., Menard, R., Meissner, M., Pradel, G., Ranford-Cartwright, L., Sharma, A., Sharma, P., Tardieux, T., Tatu, U., and Alano, P.
- Abstract
Depending on their developmental stage in the life cycle, malaria parasites develop within or outside host cells, and in extremely diverse contexts such as the vertebrate liver and blood circulation, or the insect midgut and hemocoel. Cellular and molecular mechanisms enabling the parasite to sense and respond to the intra- and the extra-cellular environments are therefore key elements for the proliferation and transmission of Plasmodium, and therefore are, from a public health perspective, strategic targets in the fight against this deadly disease. The MALSIG consortium, which was initiated in February 2009, was designed with the primary objective to integrate research ongoing in Europe and India on i) the properties of Plasmodium signalling molecules, and ii) developmental processes occurring at various points of the parasite life cycle. On one hand, functional studies of individual genes and their products in Plasmodium falciparum (and in the technically more manageable rodent model Plasmodium berghei) are providing information on parasite protein kinases and phosphatases, and of the molecules governing cyclic nucleotide metabolism and calcium signalling. On the other hand, cellular and molecular studies are elucidating key steps of parasite development such as merozoite invasion and egress in blood and liver parasite stages, control of DNA replication in asexual and sexual development, membrane dynamics and trafficking, production of gametocytes in the vertebrate host and further parasite development in the mosquito. This article, which synthetically reviews such signalling molecules and cellular processes, aims to provide a glimpse of the global frame in which the activities of the MALSIG consortium will develop over the next three years.
- Published
- 2010
- Full Text
- View/download PDF
15. Signalling in malaria parasites. The MALSIG consortium.
- Author
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Doerig, C., Baker, D., Billker, O., Blackman, M.J., Chitnis, C., Dhar Kumar, S., Heussler, V., Holder, A.A., Kocken, C., Krishna, S., Langsley, G., Lasonder, E., Menard, R., Meissner, M., Pradel, G., Ranford-Cartwright, L., Sharma, A., Sharma, P., Tardieux, T., Tatu, U., Alano, P., Doerig, C., Baker, D., Billker, O., Blackman, M.J., Chitnis, C., Dhar Kumar, S., Heussler, V., Holder, A.A., Kocken, C., Krishna, S., Langsley, G., Lasonder, E., Menard, R., Meissner, M., Pradel, G., Ranford-Cartwright, L., Sharma, A., Sharma, P., Tardieux, T., Tatu, U., and Alano, P.
- Abstract
Contains fulltext : 81539.pdf (publisher's version ) (Open Access), Depending on their developmental stage in the life cycle, malaria parasites develop within or outside host cells, and in extremely diverse contexts such as the vertebrate liver and blood circulation, or the insect midgut and hemocoel. Cellular and molecular mechanisms enabling the parasite to sense and respond to the intra- and the extra-cellular environments are therefore key elements for the proliferation and transmission of Plasmodium, and therefore are, from a public health perspective, strategic targets in the fight against this deadly disease. The MALSIG consortium, which was initiated in February 2009, was designed with the primary objective to integrate research ongoing in Europe and India on i) the properties of Plasmodium signalling molecules, and ii) developmental processes occurring at various points of the parasite life cycle. On one hand, functional studies of individual genes and their products in Plasmodium falciparum (and in the technically more manageable rodent model Plasmodium berghei) are providing information on parasite protein kinases and phosphatases, and of the molecules governing cyclic nucleotide metabolism and calcium signalling. On the other hand, cellular and molecular studies are elucidating key steps of parasite development such as merozoite invasion and egress in blood and liver parasite stages, control of DNA replication in asexual and sexual development, membrane dynamics and trafficking, production of gametocytes in the vertebrate host and further parasite development in the mosquito. This article, which synthetically reviews such signalling molecules and cellular processes, aims to provide a glimpse of the global frame in which the activities of the MALSIG consortium will develop over the next three years.
- Published
- 2009
16. Crystal structure of Plasmodium falciparum glycerol kinase with bound glycerol
- Author
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Schnick, C., primary, Polley, S.D., additional, Fivelman, Q.L., additional, Ranford-Cartwright, L., additional, Wilkinson, S.R., additional, Brannigan, J.A., additional, Wilkinson, A.J., additional, and Baker, D.A., additional
- Published
- 2008
- Full Text
- View/download PDF
17. Crystal structure of Plasmodium falciparum glycerol kinase with ADP
- Author
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Schnick, C., primary, Polley, S.D., additional, Fivelman, Q.L., additional, Ranford-Cartwright, L., additional, Wilkinson, S.R., additional, Brannigan, J.A., additional, Wilkinson, A.J., additional, and Baker, D.A., additional
- Published
- 2008
- Full Text
- View/download PDF
18. Plasmodium falciparumookinete invasion of the midgut epithelium ofAnopheles stephensiis consistent with the Time Bomb model
- Author
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BATON, L. A., primary and RANFORD-CARTWRIGHT, L. C., additional
- Published
- 2004
- Full Text
- View/download PDF
19. Frequent and Persistent, AsymptomaticPlasmodium falciparumInfections in African Infants, Characterized by Multilocus Genotyping
- Author
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Franks, S., primary, Koram, K. A., additional, Wagner, G. E., additional, Tetteh, K., additional, McGuinness, D., additional, Wheeler, J. G., additional, Nkrumah, F., additional, Ranford‐Cartwright, L., additional, and Riley, E. M., additional
- Published
- 2001
- Full Text
- View/download PDF
20. Commitment to sexual differentiation in the human malaria parasite, Plasmodium falciparum
- Author
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SMITH, T. G., primary, LOURENÇO, P., additional, CARTER, R., additional, WALLIKER, D., additional, and RANFORD-CARTWRIGHT, L. C., additional
- Published
- 2000
- Full Text
- View/download PDF
21. Chloroquine increases Plasmodium falciparum gametocytogenesis in vitro
- Author
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BUCKLING, A., primary, RANFORD-CARTWRIGHT, L. C., additional, MILES, A., additional, and READ, A. F., additional
- Published
- 1999
- Full Text
- View/download PDF
22. Characteristics of Plasmodium falciparum parasites that survive the lengthy dry season in eastern Sudan where malaria transmission is markedly seasonal.
- Author
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Babiker, H A, primary, Abdel-Muhsin, A M, additional, Walliker, D, additional, Ranford-Cartwright, L C, additional, and Satti, G, additional
- Published
- 1998
- Full Text
- View/download PDF
23. Random mating in a natural population of the malaria parasitePlasmodium falciparum
- Author
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Babiker, H. A., primary, Ranford-Cartwright, L. C., additional, Currie, D., additional, Charlwood, J. D., additional, Billingsley, P., additional, Teuscher, T., additional, and Walliker, D., additional
- Published
- 1994
- Full Text
- View/download PDF
24. Frequency of cross-fertilization in the human malaria parasitePlasmodium falciparum
- Author
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Ranford-Cartwright, L. C., primary, Balfe, P., additional, Carter, R., additional, and Walliker, D., additional
- Published
- 1993
- Full Text
- View/download PDF
25. Frequent and Persistent, Asymptomatic Plasmodium falciparum Infections in African Infants, Characterized by Multilocus Genotyping.
- Author
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Wagner, G. E., McGuinness, D., Riley, E. M., Franks, S., Ranford-Cartwright, L., Tetteh, K., Wheeler, J.G., Koram, K. A., and Nkrumah, F.
- Subjects
PLASMODIUM falciparum ,INFECTION in children ,NEONATAL infections ,PARASITES - Abstract
Presents information on a study which determined the duration and complexity of naturally acquired Plasmodium falciparum infections in small children by studying newborns in Ghana. Materials and methods used; Rates of Plasmodium falciparum infection in children; Parasite diversity.
- Published
- 2001
26. Random mating in a natural population of the malaria parasite Plasmodium falciparum.
- Author
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Babiker, H. A., Ranford-Cartwright, L. C., Currie, D., Charlwood, J. D., Billingsley, P., Teuscher, T., and Walliker, D.
- Published
- 1994
- Full Text
- View/download PDF
27. Frequency of cross-fertilization in the human malaria parasite Plasmodium falciparum.
- Author
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Ranford-Cartwright, L. C., Balfe, P., Carter, R., and Walliker, D.
- Published
- 1993
- Full Text
- View/download PDF
28. Plasmodium falciparum: Gene Mutations and Amplification of Dihydrofolate Reductase Genes in Parasites Grown in Vitro in Presence of Pyrimethamine
- Author
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Thaithong, S., Ranford-Cartwright, L. C., Siripoon, N., Harnyuttanakorn, P., Kanchanakhan, N. S., Seugorn, A., Rungsihirunrat, K., Cravo, P. V. L., and Beale, G. H.
- Abstract
Thaithong, S., Ranford-Cartwright, L. C., Siripoon, N., Harnyuttanakorn, P., Kanchanakhan, N. S., Seugorn, A., Rungsihirunrat, K., Cravo, P. V. L., and Beale, G. H. 2001. Plasmodium falciparum: Gene mutations and amplification of dihydrofolate reductase genes in parasites grown in vitro in presence of pyrimethamine. Experimental Parasitology98, 59–70. Samples of three pyrimethamine-sensitive clones of Plasmodium falciparum were grown for periods of 22–46 weeks in media containing stepwise increases in pyrimethamine concentrations and were seen to develop up to 1000-fold increases in resistance to the drug. With clone T9/94RC17, the dihydrofolate reductase (DHFR) gene was sequenced from 10 uncloned populations and 29 pure clones, all having increased resistance to pyrimethamine, and these sequences were compared with the sequence of the original pyrimethamine-sensitive clone. No changes in amino acid sequence were found to have occurred. Some resistant clones obtained by this method were then examined by pulsed-field gel electrophoresis, and the results indicated that there had been an increase in the size of chromosome 4. This was confirmed by hybridization of Southern blots with a chromosome 4-specific probe, the vacuolar ATPase subunit B gene, and a probe to DHFR. Dot-blotting with an oligonucleotide probe to DHFR confirmed that there had been increases up to 44-fold in copy number of the DHFR gene in the resistant strains. Resistant clones obtained by this procedure were then grown in medium lacking pyrimethamine for a period of nearly 2 years, and reversion nearly to the level of pyrimethamine sensitivity of the original clone T9/94RC17 was found to occur after about 16 months. Correspondingly, the chromosome 4 of the reverted population reverted to a size like that of the original sensitive clone T9/94RC17. The procedure of growing parasites in stepwise increases of pyrimethamine concentration was repeated with two other pyrimethamine-sensitive clones: TM4CB8-2.2.3 and G112CB1.1. (The DHFR gene of these clones encodes serine at position 108, in place of threonine as in clone T9/94RC17, and it was thought that this difference might conceivably affect the rate of mutation to asparagine at this position). Clones TM4CB8-2.2.3 and G112CB1.1 also responded by developing gradually increased resistance to pyrimethamine. However, in clone TM4CB8-2.2.3 a single mutation from Ile to Met at position 164 in the DHFR gene sequence was identified, and in clone G112CB1.1 there was a single mutation from Ala to Ser at position 16, but no mutations at position 108 were obtained in any of the clones studied here. In addition, chromosome 4 of clone TM4CB8-2.2.3 increased in size, presumably due to amplification of the DHFR gene. No increase in size was seen in clone G112CB1.1. We conclude that whereas some mutations producing changes in the amino acid sequence of the DHFR molecule may occur occasionally in clones or populations of P. falciparum grown in vitro in the presence of pyrimethamine, amplification of the DHFR gene following adaptation to growth in medium containing pyrimethamine occurs as a regular feature. The bearing of these findings on the development of pyrimethamine-resistant forms of malaria parasites in endemic areas is discussed.
- Published
- 2001
- Full Text
- View/download PDF
29. Genotyping of Plasmodium falciparum infections by PCR: a comparative multicentre study.
- Author
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Färnert, A, Arez, A P, Babiker, H A, Beck, H P, Benito, A, Björkman, A, Bruce, M C, Conway, D J, Day, K P, Henning, L, Mercereau-Puijalon, O, Ranford-Cartwright, L C, Rubio, J M, Snounou, G, Walliker, D, Zwetyenga, J, and do Rosario, V E
- Abstract
Genetic diversity of malaria parasites represents a major issue in understanding several aspects of malaria infection and disease. Genotyping of Plasmodium falciparum infections with polymerase chain reaction (PCR)-based methods has therefore been introduced in epidemiological studies. Polymorphic regions of the msp1, msp2 and glurp genes are the most frequently used markers for genotyping, but methods may differ. A multicentre study was therefore conducted to evaluate the comparability of results from different laboratories when the same samples were analysed. Analyses of laboratory-cloned lines revealed high specificity but varying sensitivity. Detection of low-density clones was hampered in multiclonal infections. Analyses of isolates from Tanzania and Papua New Guinea revealed similar positivity rates with the same allelic types identified. The number of alleles detected per isolate, however, varied systematically between the laboratories especially at high parasite densities. When the analyses were repeated within the laboratories, high agreement was found in getting positive or negative results but with a random variation in the number of alleles detected. The msp2 locus appeared to be the most informative single marker for analyses of multiplicity of infection. Genotyping by PCR is a powerful tool for studies on genetic diversity of P. falciparum but this study has revealed limitations in comparing results on multiplicity of infection derived from different laboratories and emphasizes the need for highly standardized laboratory protocols.
- Published
- 2001
- Full Text
- View/download PDF
30. Chloroquine increases <e1>Plasmodium falciparum</e1> gametocytogenesis <e1>in vitro</e1>
- Author
-
*, A. BUCKLING, , RANFORD-CARTWRIGHT, L. C., MILES, A., and READ, A. F.
- Abstract
Malaria parasites are capable of modulating the diversion of resources from asexual growth to the production of stages infective to mosquitoes (gametocytes). Increased rates of gametocytogenesis appear to be a general response to stress, both naturally encountered and novel. We have previously reported earlier and greater gametocytogenesis in response to subcurative antimalarial chemotherapy in the rodent malaria,
Plasmodium chabaudi ,in vivo . Using an immunofluorescent assay to detect parasites that had invaded red blood cell monolayers, we demonstrate a 5-fold increase in gametocytogenesis in the human malaria,P. falciparum ,in vitro , in response to treatment with the antimalarial drug chloroquine. In all clones used, gametocytogenesis increased with increasing inhibition of asexual growth by chloroquine. Furthermore, there were clone differences in the relationship between stress and gametocyte production, implying the response was genetically variable. This was not, however, associated with chloroquine resistance. The epidemiological significance of these results is discussed.- Published
- 1999
31. Detection of low level Plasmodium falciparum gametocytes using reverse transcriptase polymerase chain reaction
- Author
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Babiker, H. A., Abdel-Wahab, A., Ahmed, S., Suleiman, S., Ranford-Cartwright, L., Carter, R., and Walliker, D.
- Published
- 1999
- Full Text
- View/download PDF
32. Intragenic recombinants of Plasmodium falciparum identified by in situ polymerase chain reaction
- Author
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Ranford-Cartwright, L. and Walliker, D.
- Published
- 1999
- Full Text
- View/download PDF
33. Signalling in malaria parasites. The MALSIG consortium
- Author
-
Menard, R, Lasonder, E, Sharma, P, Alano, P, Sharma, A, Blackman, M J, Chitnis, C, Baker, D, Dhar Kumar, S, Billker, O, Langsley, G, Kocken, C, Doerig, C, Holder, A A, Heussler, Volker, Pradel, G, Krishna, S, Tatu, U, Meissner, M, Ranford-Cartwright, L, and Tardieux, T
- Subjects
parasitic diseases ,570 Life sciences ,biology ,3. Good health - Abstract
Depending on their developmental stage in the life cycle, malaria parasites develop within or outside host cells, and in extremely diverse contexts such as the vertebrate liver and blood circulation, or the insect midgut and hemocoel. Cellular and molecular mechanisms enabling the parasite to sense and respond to the intra- and the extra-cellular environments are therefore key elements for the proliferation and transmission of Plasmodium, and therefore are, from a public health perspective, strategic targets in the fight against this deadly disease. The MALSIG consortium, which was initiated in February 2009, was designed with the primary objective to integrate research ongoing in Europe and India on i) the properties of Plasmodium signalling molecules, and ii) developmental processes occurring at various points of the parasite life cycle. On one hand, functional studies of individual genes and their products in Plasmodium falciparum (and in the technically more manageable rodent model Plasmodium berghei) are providing information on parasite protein kinases and phosphatases, and of the molecules governing cyclic nucleotide metabolism and calcium signalling. On the other hand, cellular and molecular studies are elucidating key steps of parasite development such as merozoite invasion and egress in blood and liver parasite stages, control of DNA replication in asexual and sexual development, membrane dynamics and trafficking, production of gametocytes in the vertebrate host and further parasite development in the mosquito. This article, which synthetically reviews such signalling molecules and cellular processes, aims to provide a glimpse of the global frame in which the activities of the MALSIG consortium will develop over the next three years.
34. Simple supplementation of serum-free medium produces gametocytes of Plasmodium falciparum that transmit to mosquitoes.
- Author
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Pradhan S, Ubiaru PC, and Ranford-Cartwright L
- Subjects
- Animals, Culture Media, Serum-Free, Humans, Malaria, Falciparum parasitology, Malaria, Falciparum prevention & control, Plasmodium falciparum physiology, Plasmodium falciparum drug effects, Plasmodium falciparum growth & development, Anopheles parasitology
- Abstract
Background: Human serum is a major component of Plasmodium falciparum culture medium, and can be replaced with AlbuMAX
™ II, a lipid-rich bovine serum albumin, for asexual cultures. However, gametocytes produced without serum are poorly infective to mosquitoes. Serum suffers from high cost, limited availability, and variability in quality., Methods: Several commercially-available media supplements were tested for their ability to support parasite growth and production of P. falciparum (3D7) gametocytes in standard RPMI1640 medium containing 0.5% AlbuMAX. The impact on asexual growth and gametocyte production with each supplement was assessed and compared to standard RPMI1640 medium containing 10% human serum, as well as to medium containing 0.5% AlbuMAX alone. The infectivity of gametocytes produced with one supplement to Anopheles gambiae sensu stricto was assessed by standard membrane feeding assay and measuring both prevalence of infection and oocyst intensity., Results: Supplementation of medium containing 0.5% AlbuMAX with five supplements did not affect asexual growth of P. falciparum, and four of the five supplements supported early gametocyte production. The supplement producing the highest number of gametocytes, ITS-X, was further investigated and was found to support the production of mature gametocytes. Infection prevalence and oocyst intensity did not differ significantly between mosquitoes given a membrane feed containing gametocytes grown in medium with 0.5% AlbuMAX + ITS-X and those grown in medium with 10% human serum. Infection prevalence and oocyst intensity was significantly higher in case of ITS-X supplementation when compared to AlbuMAX alone. Infectious gametocytes were also produced from two field clones using ITS-X supplementation., Conclusions: Serum-free medium supplemented with ITS-X was able to support the growth of gametocytes of P. falciparum that were as infectious to An. gambiae as those grown in medium with 10% serum. This is the first fully serum-free culture system able to produce highly infectious gametocytes, thereby removing the requirement for access to serum for transmission assays., (© 2024. The Author(s).)- Published
- 2024
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35. India-EMBO Lecture Course: understanding malaria from molecular epidemiology, population genetics, and evolutionary perspectives.
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Sinha A, Kar S, Deora N, Dash M, Tiwari A, Kori L, Schneider K, and Ranford-Cartwright L
- Subjects
- Animals, Humans, Molecular Epidemiology, Genetics, Population, Biological Evolution, India epidemiology, Mosquito Vectors, Malaria epidemiology
- Published
- 2023
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36. Mosquito host-seeking diel rhythm and chemosensory gene expression is affected by age and Plasmodium stages.
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Hajkazemian M, Hill SR, Mozūraitis R, Ranford-Cartwright L, Emami SN, and Ignell R
- Subjects
- Animals, Female, Humans, Mosquito Vectors parasitology, Plasmodium falciparum genetics, Gene Expression, Anopheles parasitology, Malaria
- Abstract
Malaria parasites can affect vector-related behaviours, increasing transmission success. Using Anopheles gambiae and Plasmodium falciparum, we consider the effect of interaction between infection stage and vector age on diel locomotion in response to human odour and the expression of antennal chemosensory genes. We identified age-dependent behavioural diel compartmentalisation by uninfected females post-blood meal. Infection disrupts overall and diel activity patterns compared with age-matched controls. In this study, mosquitoes carrying transmissible sporozoites were more active, shifting activity periods which corresponded with human host availability, in response to human odour. Older, uninfected, blood-fed females displayed reduced activity during their peak host-seeking period in response to human odour. Age- and infection stage-specific changes in odour-mediated locomotion coincide with altered transcript abundance of select chemosensory genes suggesting a possible molecular mechanism regulating the behaviour. We hypothesize that vector-related behaviours of female mosquitoes are altered by infection stage and further modulated by the age post-blood meal of the vector. Findings may have important implications for malaria transmission and disease dynamics., (© 2022. Crown.)
- Published
- 2022
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37. Bio-products from Serratia marcescens isolated from Ghanaian Anopheles gambiae reduce Plasmodium falciparum burden in vector mosquitoes.
- Author
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Akorli EA, Ubiaru PC, Pradhan S, Akorli J, and Ranford-Cartwright L
- Abstract
Novel ideas for control of mosquito-borne disease include the use of bacterial symbionts to reduce transmission. Bacteria belonging to the family Enterobacteriaceae isolated from mosquito midgut have shown promise in limiting Plasmodium intensity in the Anopheles vector. However, the mechanism of interaction between bacteria and parasite remains unclear. This study aimed at screening bio-products of two bacteria candidates for their anti-Plasmodial effects on mosquito stages of P. falciparum. Enterobacter cloacae and Serratia marcescens were isolated from field-caught Anopheles gambiae s.l. Spent media from liquid cultures of these bacteria were filtered, lyophilized and dissolved in sterile phosphate buffered saline (PBS). The re-dissolved bacterial products were added to gametocytaemic blood meals and fed to An. gambiae mosquitoes via membrane feeders. Control groups were fed on infected blood with or without lyophilized LB medium. The effect of the products on the infection prevalence and intensity of P. falciparum in mosquitoes was assessed by dissecting mosquito midguts and counting oocysts 10-11 days post-infection. S. marcescens bio-products elicited significant reduction in the number of mosquitoes infected ( P =4.02 x10
-5 ) with P. falciparum and the oocyst intensity ( P <2 x 10-16 ) than E. cloacae products ( P >0.05 for both prevalence and intensity) compared to the control (lyophilized LB medium). These data support the use of bioproducts released by S. marcescens for malaria control based on transmission blocking in the vector., Competing Interests: Conflict of interest The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.- Published
- 2022
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- View/download PDF
38. Evolutionary race: Malaria evolves to evade sickle cell protection.
- Author
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Gómez-Díaz E and Ranford-Cartwright L
- Subjects
- Biological Evolution, Cytoprotection, Genotype, Hemoglobin, Sickle genetics, Humans, Anemia, Sickle Cell genetics, Malaria prevention & control, Malaria, Falciparum parasitology
- Abstract
Sickle cell haemoglobin (HbS) confers protection, albeit incomplete, from severe malaria. A recent study by Band et al. in Nature on parasite genomic variation of severe malaria cases identifies parasite genomic regions with alleles associated with severe disease risk in HbS individuals. The protective effect of HbS depends therefore on parasite genotype., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
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- View/download PDF
39. Real-time PCR assays for detection and quantification of early P. falciparum gametocyte stages.
- Author
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Gadalla AAH, Siciliano G, Farid R, Alano P, Ranford-Cartwright L, McCarthy JS, Thompson J, and Babiker HA
- Subjects
- Adolescent, Adult, Antimalarials therapeutic use, Female, Genes, Protozoan, Healthy Volunteers, Host-Parasite Interactions drug effects, Humans, Limit of Detection, Malaria, Falciparum drug therapy, Malaria, Falciparum parasitology, Malaria, Falciparum transmission, Male, Merozoites genetics, Middle Aged, Parasite Load, Plasmodium falciparum genetics, Reproducibility of Results, Young Adult, Malaria, Falciparum diagnosis, Merozoites isolation & purification, Plasmodium falciparum isolation & purification, Real-Time Polymerase Chain Reaction
- Abstract
The use of quantitative qRT-PCR assays for detection and quantification of late gametocyte stages has revealed the high transmission capacity of the human malaria parasite, Plasmodium falciparum. To understand how the parasite adjusts its transmission in response to in-host environmental conditions including antimalarials requires simultaneous quantification of early and late gametocytes. Here, we describe qRT-PCR assays that specifically detect and quantify early-stage P. falciparum gametocytes. The assays are based on expression of known early and late gametocyte genes and were developed using purified stage II and stage V gametocytes and tested in natural and controlled human infections. Genes pfpeg4 and pfg27 are specifically expressed at significant levels in early gametocytes with a limit of quantification of 190 and 390 gametocytes/mL, respectively. In infected volunteers, transcripts of pfpeg4 and pfg27 were detected shortly after the onset of blood stage infection. In natural infections, both early (pfpeg4/pfg27) and late gametocyte transcripts (pfs25) were detected in 71.2% of individuals, only early gametocyte transcripts in 12.6%, and only late gametocyte transcripts in 15.2%. The pfpeg4/pfg27 qRT-PCR assays are sensitive and specific for quantification of circulating sexually committed ring stages/early gametocytes and can be used to increase our understanding of epidemiological processes that modulate P. falciparum transmission., (© 2021. The Author(s).)
- Published
- 2021
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40. The Transcription Factor PfAP2-O Influences Virulence Gene Transcription and Sexual Development in Plasmodium falciparum .
- Author
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Cubillos EFG, Prata IO, Fotoran WL, Ranford-Cartwright L, and Wunderlich G
- Subjects
- Animals, Erythrocytes, Humans, Protozoan Proteins genetics, Sexual Development, Transcription Factors genetics, Transcription, Genetic, Virulence genetics, Malaria, Falciparum, Plasmodium falciparum genetics
- Abstract
The human malaria parasite Plasmodium falciparum expresses variant PfEMP1 proteins on the infected erythrocyte, which function as ligands for endothelial receptors in capillary vessels, leading to erythrocyte sequestration and severe malaria. The factors that orchestrate the mono-allelic expression of the 45-90 PfEMP1-encoding var genes within each parasite genome are still not fully identified. Here, we show that the transcription factor PfAP2-O influences the transcription of var genes. The temporary knockdown of PfAP2-O leads to a complete loss of var transcriptional memory and a decrease in cytoadherence in CD36 adherent parasites. AP2-O-knocked-down parasites exhibited also significant reductions in transmission through Anopheles mosquitoes. We propose that PfAP2-O is, beside its role in transmission stages, also one of the virulence gene transcriptional regulators and may therefore be exploited as an important target to disrupt severe malaria and block parasite transmission., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Cubillos, Prata, Fotoran, Ranford-Cartwright and Wunderlich.)
- Published
- 2021
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41. Influx of diverse, drug resistant and transmissible Plasmodium falciparum into a malaria-free setting in Qatar.
- Author
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Al-Rumhi A, Al-Hashami Z, Al-Hamidhi S, Gadalla A, Naeem R, Ranford-Cartwright L, Pain A, Sultan AA, and Babiker HA
- Subjects
- Communicable Diseases, Imported epidemiology, Communicable Diseases, Imported parasitology, Genetic Variation, Genotype, Humans, Malaria epidemiology, Malaria parasitology, Parasite Load, Plasmodium falciparum isolation & purification, Plasmodium vivax genetics, Plasmodium vivax isolation & purification, Prevalence, Qatar epidemiology, Communicable Diseases, Imported transmission, Drug Resistance genetics, Malaria transmission, Plasmodium falciparum genetics
- Abstract
Background: Successful control programs have impeded local malaria transmission in almost all Gulf Cooperation Council (GCC) countries: Qatar, Bahrain, Kuwait, Oman, the United Arab Emirates (UAE) and Saudi Arabia. Nevertheless, a prodigious influx of imported malaria via migrant workers sustains the threat of local transmission. Here we examine the origin of imported malaria in Qatar, assess genetic diversity and the prevalence of drug resistance genes in imported Plasmodium falciparum, and finally, address the potential for the reintroduction of local transmission., Methods: This study examined imported malaria cases reported in Qatar, between 2013 and 2016. We focused on P. falciparum infections and estimated both total parasite and gametocyte density, using qPCR and qRT-PCR, respectively. We also examined ten neutral microsatellites and four genes associated with drug resistance, Pfmrp1, Pfcrt, Pfmdr1, and Pfkelch13, to assess the genetic diversity of imported P. falciparum strains, and the potential for propagating drug resistance genotypes respectively., Results: The majority of imported malaria cases were P. vivax, while P. falciparum and mixed species infections (P. falciparum / P. vivax) were less frequent. The primary origin of P. vivax infection was the Indian subcontinent, while P. falciparum was mostly presented by African expatriates. Imported P. falciparum strains were highly diverse, carrying multiple genotypes, and infections also presented with early- and late-stage gametocytes. We observed a high prevalence of mutations implicated in drug resistance among these strains, including novel SNPs in Pfkelch13., Conclusions: The influx of genetically diverse P. falciparum, with multiple drug resistance markers and a high capacity for gametocyte production, represents a threat for the reestablishment of drug-resistant malaria into GCC countries. This scenario highlights the impact of mass international migration on the reintroduction of malaria to areas with absent or limited local transmission.
- Published
- 2020
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42. Plasmodium comparative genomics.
- Author
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Ranford-Cartwright L and Gómez-Díaz E
- Subjects
- Chromatin metabolism, Gene Expression Regulation, Genomics, Plasmodium genetics
- Published
- 2019
- Full Text
- View/download PDF
43. Prediction of mosquito species and population age structure using mid-infrared spectroscopy and supervised machine learning.
- Author
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González Jiménez M, Babayan SA, Khazaeli P, Doyle M, Walton F, Reedy E, Glew T, Viana M, Ranford-Cartwright L, Niang A, Siria DJ, Okumu FO, Diabaté A, Ferguson HM, Baldini F, and Wynne K
- Abstract
Despite the global efforts made in the fight against malaria, the disease is resurging. One of the main causes is the resistance that Anopheles mosquitoes, vectors of the disease, have developed to insecticides. Anopheles must survive for at least 10 days to possibly transmit malaria. Therefore, to evaluate and improve malaria vector control interventions, it is imperative to monitor and accurately estimate the age distribution of mosquito populations as well as their population sizes. Here, we demonstrate a machine-learning based approach that uses mid-infrared spectra of mosquitoes to characterise simultaneously both age and species identity of females of the African malaria vector species Anopheles gambiae and An. arabiensis , using laboratory colonies. Mid-infrared spectroscopy-based prediction of mosquito age structures was statistically indistinguishable from true modelled distributions. The accuracy of classifying mosquitoes by species was 82.6%. The method has a negligible cost per mosquito, does not require highly trained personnel, is rapid, and so can be easily applied in both laboratory and field settings. Our results indicate this method is a promising alternative to current mosquito species and age-grading approaches, with further improvements to accuracy and expansion for use with wild mosquito vectors possible through collection of larger mid-infrared spectroscopy data sets., Competing Interests: No competing interests were disclosed., (Copyright: © 2019 González Jiménez M et al.)
- Published
- 2019
- Full Text
- View/download PDF
44. Correction to: Detection of Plasmodium falciparum infected Anopheles gambiae using near-infrared spectroscopy.
- Author
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Maia MF, Kapulu M, Muthui M, Wagah MG, Ferguson HM, Dowell FE, Baldini F, and Ranford-Cartwright L
- Abstract
Following publication of the original article [1], it was flagged that the name of the author Lisa Ranford-Cartwright had been (incorrectly) given as 'Lisa-Ranford Cartwright.
- Published
- 2019
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- View/download PDF
45. Detection of Plasmodium falciparum infected Anopheles gambiae using near-infrared spectroscopy.
- Author
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Maia MF, Kapulu M, Muthui M, Wagah MG, Ferguson HM, Dowell FE, Baldini F, and Ranford-Cartwright L
- Subjects
- Animals, Female, Mass Screening methods, Parasite Load, Real-Time Polymerase Chain Reaction, Anopheles parasitology, Entomology methods, Plasmodium falciparum growth & development, Spectroscopy, Near-Infrared methods
- Abstract
Background: Large-scale surveillance of mosquito populations is crucial to assess the intensity of vector-borne disease transmission and the impact of control interventions. However, there is a lack of accurate, cost-effective and high-throughput tools for mass-screening of vectors., Methods: A total of 750 Anopheles gambiae (Keele strain) mosquitoes were fed Plasmodium falciparum NF54 gametocytes through standard membrane feeding assay (SMFA) and afterwards maintained in insectary conditions to allow for oocyst (8 days) and sporozoite development (14 days). Thereupon, each mosquito was scanned using near infra-red spectroscopy (NIRS) and processed by quantitative polymerase chain reaction (qPCR) to determine the presence of infection and infection load. The spectra collected were randomly assigned to either a training dataset, used to develop calibrations for predicting oocyst- or sporozoite-infection through partial least square regressions (PLS); or to a test dataset, used for validating the calibration's prediction accuracy., Results: NIRS detected oocyst- and sporozoite-stage P. falciparum infections with 88% and 95% accuracy, respectively. This study demonstrates proof-of-concept that NIRS is capable of rapidly identifying laboratory strains of human malaria infection in African mosquito vectors., Conclusions: Accurate, low-cost, reagent-free screening of mosquito populations enabled by NIRS could revolutionize surveillance and elimination strategies for the most important human malaria parasite in its primary African vector species. Further research is needed to evaluate how the method performs in the field following adjustments in the training datasets to include data from wild-caught infected and uninfected mosquitoes.
- Published
- 2019
- Full Text
- View/download PDF
46. Gametocyte Sex Ratio: The Key to Understanding Plasmodium falciparum Transmission?
- Author
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Tadesse FG, Meerstein-Kessel L, Gonçalves BP, Drakeley C, Ranford-Cartwright L, and Bousema T
- Subjects
- Animals, Humans, Transcriptome, Culicidae parasitology, Host-Parasite Interactions, Malaria, Falciparum parasitology, Malaria, Falciparum transmission, Plasmodium falciparum physiology, Sex Ratio
- Abstract
A mosquito needs to ingest at least one male and one female gametocyte to become infected with malaria. The sex of Plasmodium falciparum gametocytes can be determined microscopically but recent transcriptomics studies paved the way for the development of molecular methods that allow sex-ratio assessments at much lower gametocyte densities. These sex-specific gametocyte diagnostics were recently used to examine gametocyte dynamics in controlled and natural infections as well as the impact of different antimalarial drugs. It is currently unclear to what extent sex-specific gametocyte diagnostics obviate the need for mosquito feeding assays to formally assess transmission potential. Here, we review recent and historic assessments of gametocyte sex ratio in relation to host and parasite characteristics, treatment, and transmission potential., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
47. Vγ9Vδ2 T cells proliferate in response to phosphoantigens released from erythrocytes infected with asexual and gametocyte stage Plasmodium falciparum.
- Author
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Liu C, Emami SN, Pettersson J, Ranford-Cartwright L, Faye I, and Parmryd I
- Subjects
- Hemoglobins immunology, Humans, Antigens immunology, Cell Proliferation physiology, Erythrocytes immunology, Malaria, Falciparum immunology, Plasmodium falciparum immunology, T-Lymphocytes immunology
- Abstract
Vγ9Vδ2 T cells, the dominant γδ T cell subset in human peripheral blood, are stimulated by phosphoantigens, of which (E)-4-Hydroxy-3-methyl-but-2-enyl pyrophosphate, is produced in the apicoplast of malaria parasites. Cell-free media from synchronised Plasmodium falciparum asexual ring, trophozoite, and schizont stage-cultures of high purity as well as media from ruptured schizont cultures, all stimulated Vγ9Vδ2 T cell proliferation, as did media from pure gametocyte cultures, whereas media from uninfected erythrocytes cultures did not. The media from ruptured schizont cultures and all the asexual and gametocyte stage cultures contained only background iron levels, suggesting that all erythrocyte haemoglobin is consumed as the parasites develop and supporting that the phosphoantigens were released from intact parasitized erythrocytes. The Vγ9Vδ2 T cell-stimulating agent was not affected by freezing, thawing or heating but was sensitive to phosphatase treatment, confirming its phosphoantigen identity. In summary, phosphoantigens are released from parasitised erythrocytes at all developmental blood stages., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
48. Detection of human disease conditions by single-cell morpho-rheological phenotyping of blood.
- Author
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Toepfner N, Herold C, Otto O, Rosendahl P, Jacobi A, Kräter M, Stächele J, Menschner L, Herbig M, Ciuffreda L, Ranford-Cartwright L, Grzybek M, Coskun Ü, Reithuber E, Garriss G, Mellroth P, Henriques-Normark B, Tregay N, Suttorp M, Bornhäuser M, Chilvers ER, Berner R, and Guck J
- Subjects
- Humans, Blood Cells cytology, Blood Cells physiology, Cytological Techniques methods, Diagnostic Tests, Routine methods, Single-Cell Analysis methods
- Abstract
Blood is arguably the most important bodily fluid and its analysis provides crucial health status information. A first routine measure to narrow down diagnosis in clinical practice is the differential blood count, determining the frequency of all major blood cells. What is lacking to advance initial blood diagnostics is an unbiased and quick functional assessment of blood that can narrow down the diagnosis and generate specific hypotheses. To address this need, we introduce the continuous, cell-by-cell morpho-rheological (MORE) analysis of diluted whole blood, without labeling, enrichment or separation, at rates of 1000 cells/sec. In a drop of blood we can identify all major blood cells and characterize their pathological changes in several disease conditions in vitro and in patient samples. This approach takes previous results of mechanical studies on specifically isolated blood cells to the level of application directly in blood and adds a functional dimension to conventional blood analysis., Competing Interests: NT, AJ, MK, JS, LM, MH, LC, LR, MG, ÜC, ER, GG, PM, BH, NT, MS, MB, EC, RB, JG No competing interests declared, CH Owns shares of, and is full-time employed at, Zellmechanik Dresden GmbH, a company selling devices based on real-time deformability cytometry. The author has no other financial interests to declare, OO Own shares of, and are part-time employed at, Zellmechanik Dresden GmbH, a company selling devices based on real-time deformability cytometry. The author has no other financial interests to declare. Zellmechanik Dresden GmbH did not have any role in the conception and planning of this study, or its preparation for publication, PR Philipp Rosendahl: Own shares of, and are part-time employed at, Zellmechanik Dresden GmbH, a company selling devices based on real-time deformability cytometry. The author has no other financial interests to declare. Zellmechanik Dresden GmbH did not have any role in the conception and planning of this study, or its preparation for publication, (© 2018, Toepfner et al.)
- Published
- 2018
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49. Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum.
- Author
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Miles A, Iqbal Z, Vauterin P, Pearson R, Campino S, Theron M, Gould K, Mead D, Drury E, O'Brien J, Ruano Rubio V, MacInnis B, Mwangi J, Samarakoon U, Ranford-Cartwright L, Ferdig M, Hayton K, Su XZ, Wellems T, Rayner J, McVean G, and Kwiatkowski D
- Subjects
- Chromosome Mapping, DNA Copy Number Variations genetics, Genome, Protozoan genetics, High-Throughput Nucleotide Sequencing, Humans, INDEL Mutation, Malaria, Falciparum drug therapy, Malaria, Falciparum parasitology, Meiosis genetics, Plasmodium falciparum drug effects, Plasmodium falciparum pathogenicity, Polymorphism, Single Nucleotide, Recombination, Genetic genetics, Drug Resistance genetics, Genetic Variation, Malaria, Falciparum genetics, Plasmodium falciparum genetics
- Abstract
The malaria parasite Plasmodium falciparum has a great capacity for evolutionary adaptation to evade host immunity and develop drug resistance. Current understanding of parasite evolution is impeded by the fact that a large fraction of the genome is either highly repetitive or highly variable and thus difficult to analyze using short-read sequencing technologies. Here, we describe a resource of deep sequencing data on parents and progeny from genetic crosses, which has enabled us to perform the first genome-wide, integrated analysis of SNP, indel and complex polymorphisms, using Mendelian error rates as an indicator of genotypic accuracy. These data reveal that indels are exceptionally abundant, being more common than SNPs and thus the dominant mode of polymorphism within the core genome. We use the high density of SNP and indel markers to analyze patterns of meiotic recombination, confirming a high rate of crossover events and providing the first estimates for the rate of non-crossover events and the length of conversion tracts. We observe several instances of meiotic recombination within copy number variants associated with drug resistance, demonstrating a mechanism whereby fitness costs associated with resistance mutations could be compensated and greater phenotypic plasticity could be acquired., (© 2016 Miles et al.; Published by Cold Spring Harbor Laboratory Press.)
- Published
- 2016
- Full Text
- View/download PDF
50. Host candidate gene polymorphisms and associated clearance of P. falciparum amodiaquine and fansidar resistance mutants in children less than 5 years in Cameroon.
- Author
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Ali IM, Evehe MS, Netongo PM, Atogho-Tiedeu B, Akindeh-Nji M, Ngora H, Domkam IK, Diakite M, Baldip K, Ranford-Cartwright L, Mimche PN, Lamb T, and Mbacham WF
- Subjects
- Amodiaquine pharmacology, Antimalarials pharmacology, Cameroon, Child, Preschool, Drug Combinations, Drug Resistance, Female, Gene Frequency, Genotype, Humans, Infant, Infant, Newborn, Malaria, Falciparum parasitology, Male, Plasmodium falciparum drug effects, Polymorphism, Single Nucleotide, Pyrimethamine pharmacology, Sulfadoxine pharmacology, Interleukin-22, Genetic Predisposition to Disease, Interleukin-4 genetics, Interleukins genetics, Malaria, Falciparum genetics, Malaria, Falciparum immunology, Plasmodium falciparum immunology
- Abstract
Background: In this post-hoc analysis, we determined the influence of single nucleotide polymorphisms in host candidate immune genes on the outcome of drug resistant malaria in Cameroon., Methods: Human DNA from 760 patients from a previous clinical trial was subjected to mass spectrometry-based single nucleotide polymorphism (SNP) genotyping. Allele frequencies of candidate immune genes were calculated for 62 SNPs on 17 human chromosomes for their possible involvement in clearance of drug-resistant parasites with the triple mutations of pfcrt76T, pfmdr86Y, and pfmdr1246Y (TY) and pfdhfr51I, pfdhfr59R, pfdhfr108N, and pfdhps437G (IRNG) which were determined by dotblot or PCR-restriction analysis. Differences in SNP frequencies and association analysis were carried out by comparing Chi-square odds ratios (ORs) and stratified by Mantel-Haenzel statistics. An adjusted P value (OR) <0·0008 was considered significant., Results: Post-treatment drug failure rates were amodiaquine (36·4%); sulpadoxine/pyrimethamine-amodiaquine combination (15·4%); and sulphadoxine/pyrimethamine (18·1%). SNPs in IL22, IL-4R1, and CD36 appeared to have been associated with clearance of resistant parasites [p = 0·017, OR (C allele):1·44, 95% CI (OR): 1·06-1·95]; [P = 0·014, OR = 1·31, 95% CI (OR): 1·07-1·83]; [P = 5·78×10(-5), OR = 0·27, 95%CI (OR): 0·13-0·54], respectively, with high fever (>39°C for 48 hours) [IL-22, P = 0·01, OR = 1·5, 95% CI (OR): 1·8-2·1] and also in high frequency among the Fulani participants [P = 0·006, OR = 1·83, 95% CI (OR): 1·11-3·08)]. The CD36-1264 null allele was completely absent in the northern population., Conclusion: Independent association of SNPs in IL22 and IL-4 with clearance of amodiaquine- and sulphadoxine/pyrimethamine-resistant parasites did not reach statistical significance, but may suggest that not all drug-resistant mutants are adversely affected by the same immune-mediated mechanisms of clearance.
- Published
- 2014
- Full Text
- View/download PDF
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