16 results on '"Ramos-Jesus J"'
Search Results
2. Quantitative tracking of grain structure evolution in a nanocrystalline metal during cyclic loading
- Author
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Panzarino, Jason F., Ramos, Jesus J., and Rupert, Timothy J.
- Subjects
Condensed Matter - Materials Science ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
Molecular dynamics simulations were used to quantify mechanically-induced structural evolution in nanocrystalline Al with an average grain size of 5 nm. A polycrystalline sample was cyclically strained at different temperatures, while a recently developed grain tracking algorithm was used to measure the relative contributions of novel deformation mechanisms such as grain rotation and grain sliding. Sample texture and grain size were also tracked during cycling, to show how nanocrystalline plasticity rearranges overall grain structure and alters the grain boundary network. While no obvious texture is developing during cycling, the processes responsible for plasticity act collectively to alter the interfacial network. Cyclic loading led to the formation of many twin boundaries throughout the sample as well as the occasional coalescence of neighboring grains, with higher temperatures causing more evolution. A temperature-dependent cyclic strengthening effect was observed, demonstrating that both the structure and properties of nanocrystalline metals can be dynamic during loading., Comment: 12 figures
- Published
- 2014
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3. Evaluation of the nutritive value of sugarcane residues inoculated with fungus Fomes sp/Evaluacion del valor nutritivo de residuos de cana de azucar inoculado con hongo Fomes sp
- Author
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Olivera, Alex D., Aranda, Emilio I., Ramos, Jesus J., Vargas, Luis V., Zaldivar, Juan C., and Mendoza, German M.
- Published
- 2014
4. Two-fluid tearing mode instability in cylindrical geometry
- Author
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ITO, Atsushi, RAMOS, Jesus J., ITO, Atsushi, and RAMOS, Jesus J.
- Abstract
This paper investigates the linear stability of a force-free equilibrium in a plasma cylinder of finite aspect ratio, against the two-fluid resistive tearing mode. An analytic dispersion relation is derived by extending to cylindrical geometry the slab geometry boundary layer theory applicable to two-fluid tearing modes for high beta and general ion skin depths [E. Ahedo and J. J. Ramos, Plasma Phys. Controlled Fusion 51, 055018 (2009)]. The cylindrical dispersion relation shows the dependence of the mode growth rate and real frequency on the ion skin depth, through different regimes that range from the single-fluid MHD limit to the electron MHD limit. It also shows that the non-zero real frequency of the mode arises due to the combination of two-fluid and cylindrical effects. A numerical solution of the complete set of normal-mode equations that resolves the fine-scale singular layer is carried out, for a wide range of resistivity and ion skin depth values. The numerically obtained eigenvalues agree very well with the analytic dispersion relation and the agreement improves the smaller the resistivity and the larger the ion skin depth are. Comparison between the numerical eigenfunctions and the inner solutions of the boundary layer theory shows that the eigenfunctions develop imaginary parts within the resonant layer, also due to the combination of two-fluid and cylindrical effects., source:https://doi.org/10.1063/1.4986116, identifier:0000-0001-8999-1784
- Published
- 2021
5. Numerical analysis of two-fluid tearing mode instability in a finite aspect ratio cylinder
- Author
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ITO, Atsushi, RAMOS, Jesus J., ITO, Atsushi, and RAMOS, Jesus J.
- Abstract
The two-fluid resistive tearing mode instability in a periodic plasma cylinder of finite aspect ratio is investigated numerically for parameters such that the cylindrical aspect ratio and two-fluid effects are of order unity, hence the real and imaginary parts of the mode eigenfunctions and growth rate are comparable. Considering a force-free equilibrium, numerical solutions of the complete eigenmode equations for general aspect ratios and ion skin depths are compared and found to be in very good agreement with the corresponding analytic solutions derived by means of the boundary layer theory [A. Ito and J. J. Ramos, Phys. Plasmas 24, 072102 (2017)]. Scaling laws for the growth rate and the real frequency of the mode are derived from the analytic dispersion relation by using Taylor expansions and Padé approximations. The cylindrical finite aspect ratio effect is inferred from the scaling law for the real frequency of the mode., source:Physics of Plasmas 25, 012117 (2018), source:https://doi.org/10.1063/1.5009389, identifier:0000-0001-8999-1784
- Published
- 2021
6. Quantitative tracking of grain structure evolution in a nanocrystalline metal during cyclic loading
- Author
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Panzarino, Jason F, primary, Ramos, Jesus J, additional, and Rupert, Timothy J, additional
- Published
- 2015
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7. Resistive stability of magnetic dipole and other axisymmetric closed field line configurations
- Author
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Simakov, Andrei N., primary, Catto, Peter J., additional, Ramos, Jesus J., additional, and Hastie, R. J., additional
- Published
- 2002
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8. Ballooning stability of a point dipole equilibrium
- Author
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Simakov, Andrei N., primary, Catto, Peter J., additional, Krasheninnikov, S. I., additional, and Ramos, Jesus J., additional
- Published
- 2000
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9. Coherent structures in rotating non-neutral plasma
- Author
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Lund, Steven M., primary, Ramos, Jesus J., additional, and Davidson, Ronald C., additional
- Published
- 1993
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10. Comment on the stability theorem of Davidson and Lund
- Author
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Smith, Ralph A., primary, O’Neil, Thomas M., additional, Lund, Steven M., additional, Ramos, Jesus J., additional, and Davidson, Ronald C., additional
- Published
- 1992
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11. Development of an electrochemical DNA-based biosensor for the detection of the cardiovascular pharmacogenetic-altering SNP CYP2C9*3.
- Author
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Morais SL, Magalhães JMCS, Domingues VF, Delerue-Matos C, Ramos-Jesus J, Ferreira-Fernandes H, Pinto GR, Santos M, and Barroso MF
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- Humans, Warfarin, Polymorphism, Single Nucleotide, Pharmacogenetics, Cytochrome P-450 CYP2C9 genetics, Vitamin K Epoxide Reductases genetics, Anticoagulants, DNA genetics, Genotype, DNA Probes genetics, Aryl Hydrocarbon Hydroxylases genetics, Biosensing Techniques
- Abstract
Cardiovascular diseases are among the major causes of mortality and morbidity. Warfarin is often prescribed for these disorders, an anticoagulant with inter and intra-dosage variability dose required to achieve the target international normalized ratio. Warfarin presents a narrow therapeutic index, and due to its variability, it can often be associated with the risk of hemorrhage, or in other patients, thromboembolism. Single-nucleotide polymorphisms are included in the causes that contribute to this variability. The Cytochrome P450 (CYP) 2C9*3 genetic polymorphism modifies its enzymatic activity, and hence warfarin's plasmatic concentration. Thus, the need for a selective, rapid, low-cost, and real-time detection device is crucial before prescribing warfarin. In this work, a disposable electrochemical DNA-based biosensor capable of detecting CYP2C9*3 polymorphism was developed. By analyzing genomic databases, two specific 78 base pairs DNA probes; one with the wild-type adenine (Target-A) and another with the cytosine (Target-C) single-nucleotide genetic variation were designed. The biosensor implied the immobilization on screen-printed gold electrodes of a self-assembled monolayer composed by mercaptohexanol and a linear CYP2C9*3 DNA-capture probe. To improve the selectivity and avoid secondary structures a sandwich format of the CYP2C9*3 allele was designed using complementary fluorescein isothiocyanate-labeled signaling DNA probe and enzymatic amplification of the electrochemical signal. Chronoamperometric measurements were performed at a range of 0.015-1.00 nM for both DNA targets achieving limit of detection of 42 p.m. The developed DNA-based biosensor was able to discriminate between the two synthetic target DNA targets, as well as the targeted denatured genomic DNA, extracted from volunteers genotyped as non-variant homozygous (A/A) and heterozygous (A/C) of the CYP2C9*3 polymorphism., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)
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- 2023
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12. Novel Ocellatin Peptides Mitigate LPS-induced ROS Formation and NF-kB Activation in Microglia and Hippocampal Neurons.
- Author
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Sousa NA, Oliveira GAL, de Oliveira AP, Lopes ALF, Iles B, Nogueira KM, Araújo TSL, Souza LKM, Araújo AR, Ramos-Jesus J, Plácido A, Amaral C, Campelo YDM, Barbosa EA, Portugal CC, Socodato R, Lobo A, Relvas J, Bemquerer M, Eaton P, Leite JRSA, and Medeiros JVR
- Subjects
- Amino Acid Sequence genetics, Animals, Antimicrobial Cationic Peptides chemistry, Antimicrobial Cationic Peptides genetics, Antimicrobial Cationic Peptides metabolism, Hippocampus metabolism, Infections chemically induced, Infections genetics, Infections microbiology, Lipopolysaccharides toxicity, Mice, Microglia drug effects, NF-kappa B genetics, Neurons metabolism, Nitrites antagonists & inhibitors, Nitrites metabolism, Reactive Oxygen Species metabolism, Antimicrobial Cationic Peptides pharmacology, Anura metabolism, Hippocampus drug effects, Infections drug therapy, Neurons drug effects
- Abstract
Cutaneous secretions of amphibians have bioactive compounds, such as peptides, with potential for biotechnological applications. Therefore, this study aimed to determine the primary structure and investigate peptides obtained from the cutaneous secretions of the amphibian, Leptodactylus vastus, as a source of bioactive molecules. The peptides obtained possessed the amino acid sequences, GVVDILKGAAKDLAGH and GVVDILKGAAKDLAGHLASKV, with monoisotopic masses of [M + H]
± = 1563.8 Da and [M + H]± = 2062.4 Da, respectively. The molecules were characterized as peptides of the class of ocellatins and were named as Ocellatin-K1(1-16) and Ocellatin-K1(1-21). Functional analysis revealed that Ocellatin-K1(1-16) and Ocellatin-K1(1-21) showed weak antibacterial activity. However, treatment of mice with these ocellatins reduced the nitrite and malondialdehyde content. Moreover, superoxide dismutase enzymatic activity and glutathione concentration were increased in the hippocampus of mice. In addition, Ocellatin-K1(1-16) and Ocellatin-K1(1-21) were effective in impairing lipopolysaccharide (LPS)-induced reactive oxygen species (ROS) formation and NF-kB activation in living microglia. We incubated hippocampal neurons with microglial conditioned media treated with LPS and LPS in the presence of Ocellatin-K1(1-16) and Ocellatin-K1(1-21) and observed that both peptides reduced the oxidative stress in hippocampal neurons. Furthermore, these ocellatins demonstrated low cytotoxicity towards erythrocytes. These functional properties suggest possible to neuromodulatory therapeutic applications.- Published
- 2020
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13. Fe 3 O 4 @Au nanoparticles-based magnetoplatform for the HMGA maize endogenous gene electrochemical genosensing.
- Author
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Sousa JB, Ramos-Jesus J, Silva LC, Pereira C, de-Los-Santos-Álvarez N, Fonseca RAS, Miranda-Castro R, Delerue-Matos C, Santos Júnior JR, and Barroso MF
- Subjects
- Base Sequence, DNA Probes chemistry, DNA Probes genetics, DNA, Plant chemistry, DNA, Plant genetics, DNA, Single-Stranded chemistry, DNA, Single-Stranded genetics, Electrochemical Techniques methods, Immobilized Nucleic Acids chemistry, Immobilized Nucleic Acids genetics, Limit of Detection, Nucleic Acid Hybridization, Plant Proteins genetics, Plants, Genetically Modified genetics, Biosensing Techniques methods, Genes, Plant, Gold chemistry, HMGA Proteins genetics, Magnetite Nanoparticles chemistry, Zea mays genetics
- Abstract
This work addresses a technological advance applied to the construction of a magnetogenoassay with electrochemical transduction for the maize taxon-specific (HMGA gene) detection using gold-coated magnetic nanoparticles as nanosized platform. Superparamagnetic core-shell Fe
3 O4 @Au nanoparticles (10.4 ± 1.7 nm) were used to assemble the genoassay through the covalent immobilization of HMGA DNA probes onto carboxylated self-assembled monolayers at the nanoparticles surface. A hybridization reaction using sandwich format was selected to prevent inefficient hybridization connected with stable secondary DNA structures using also fluorescein isothiocyanate as DNA signaling tag. The labelling of the hybridization reaction with enzymes allowed the chronoamperometric measurement of the peroxidase activity linked to the nanoplatform located on gold surface. Using this electrochemical magnetogenoassay a linear concentration range from 0.5 to 5 nM and a LOD of 90 pM with a RSD <1.2% was calculated. Certified maize was evaluated without further purification after PCR amplification. This work highlights the efficacy of the electrochemical magnetogenoassay for the HMGA detection, showing its potential as alternative procedure for the verification of the compliance of the legislation., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2020
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14. Cry1A(b)16 toxin from Bacillus thuringiensis: Theoretical refinement of three-dimensional structure and prediction of peptides as molecular markers for detection of genetically modified organisms.
- Author
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Plácido A, Coelho A, Abreu Nascimento L, Gomes Vasconcelos A, Fátima Barroso M, Ramos-Jesus J, Costa V, das Chagas Alves Lima F, Delerue-Matos C, Martins Ramos R, Marani MM, and Roberto de Souza de Almeida Leite J
- Subjects
- Amino Acid Motifs, Animals, Antibodies chemistry, Antibodies isolation & purification, Bacillus thuringiensis chemistry, Bacillus thuringiensis immunology, Bacillus thuringiensis Toxins, Bacterial Proteins immunology, Bacterial Toxins immunology, Binding Sites, Endotoxins immunology, Hemolysin Proteins immunology, Immunization, Immunoassay, Peptides administration & dosage, Peptides chemical synthesis, Peptides immunology, Protein Binding, Protein Interaction Domains and Motifs, Protein Isoforms chemistry, Protein Isoforms immunology, Protein Structure, Secondary, Protein Structure, Tertiary, Rats, Structural Homology, Protein, Zea mays immunology, Bacterial Proteins chemistry, Bacterial Toxins chemistry, Endotoxins chemistry, Food Analysis methods, Hemolysin Proteins chemistry, Molecular Dynamics Simulation, Plants, Genetically Modified, Zea mays genetics
- Abstract
Transgenic maize produced by the insertion of the Cry transgene into its genome became the second most cultivated crop worldwide. Cry gene from Bacillus thuringiensis kurstaki expresses protein derivatives of crystalline endotoxins which confer insect resistance onto the maize crop. Mandatory labeling of processed food containing or made by genetically modified organisms is in force in many countries, so, it is very urgent to develop fast and practical methods for GMO identification, for example, biosensors. In the absence of an available empirical structure of Cry1A(b)16 protein, a theoretical model was effectively generated, in this work, by homology modeling and molecular dynamics simulations based on two available homologous protein structures. Molecular dynamics simulations were carried out to refine the selected model, and an analysis of its global structure was performed. The refined models of Cry1A(b)16 showed a standard fold and structural characteristics similar to those seen in Bacillus thuringiensis Cry1A(a) insecticidal toxin and Bacillus thuringiensis serovar kurstaki Cry1A(c) toxin. After in silico analysis of Cry1A(b)16, two immunoreactive candidate peptides were selected and specific polyclonal antibodies were produced resulting in antibody-peptide interaction. Biosensing devices are expected to be developed for detection of the Cry1A(b) protein as a marker of transgenic maize in food. Proteins 2017; 85:1248-1257. © 2017 Wiley Periodicals, Inc., (© 2017 Wiley Periodicals, Inc.)
- Published
- 2017
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15. A piezoelectric immunosensor for Leishmania chagasi antibodies in canine serum.
- Author
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Ramos-Jesus J, Carvalho KA, Fonseca RA, Oliveira GG, Melo SM, Alcântara-Neves NM, and Dutra RF
- Subjects
- Animals, Antigens chemistry, Dogs, Electrodes, Leishmania infantum immunology, Leishmaniasis, Visceral immunology, Micro-Electrical-Mechanical Systems methods, Quartz, Antibodies, Protozoan blood, Biological Assay instrumentation, Leishmaniasis, Visceral blood
- Abstract
The American visceral leishmaniasis is an important cause of morbidity and mortality in Brazil for both humans and dogs. Attempts to make a diagnosis of this disease need to be improved, especially in endemic areas, and in the tracking and screening of asymptomatic dogs, which are their main host in urban areas. A quartz crystal microbalance immunosensor for the diagnosis of the canine visceral leishmaniasis using a recombinant antigen of Leishmania chagasi (rLci2B-NH6) was developed. The rLci2B-NH6 was tightly immobilized on a quartz crystal gold electrode by self-assembled monolayer based on short-chain length thiol. The strategy was the use of the antigen-histidine tail covalently linked to glutaraldehyde performing a Schift base which permits a major exposure of epitopes and a reduced steric hindrance. The immunosensor showed good results regarding sensitivity and reproducibility, being able to distinguish positive and negative canine serum for L. chagasi. Furthermore, the immunosensor can be reused through exposure to sodium dodecyl sulfate solution, which promotes the dissociation of antigen-antibody binding, restoring the sensor surface with immobilized biologically active antigens for further analysis.
- Published
- 2011
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16. A nanostructured piezoelectric immunosensor for detection of human cardiac troponin T.
- Author
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Fonseca RA, Ramos-Jesus J, Kubota LT, and Dutra RF
- Subjects
- Antibodies, Monoclonal chemistry, Antibodies, Monoclonal immunology, Cystamine chemistry, Electrodes, Glycine chemistry, Gold chemistry, Humans, Hydrogen-Ion Concentration, Immunoassay methods, Myocardial Infarction diagnosis, Osmolar Concentration, Oxidation-Reduction, Sensitivity and Specificity, Serum chemistry, Sulfhydryl Compounds chemistry, Troponin T blood, Troponin T immunology, Biosensing Techniques methods, Electrochemical Techniques methods, Nanoparticles chemistry, Troponin T analysis
- Abstract
A piezoelectric immunosensor based on gold nanoparticles (AuNPs) co-immobilized on a dithiol-modified surface is proposed for detection of human cardiac troponin T (TnT). Anti-human troponin T (anti-TnT) antibodies were covalently immobilized on the nanostructured electrode surface by thiol-aldehyde linkages. In a homogeneous bulk solution, TnT was captured by anti-TnT immobilized on the QCM electrode. Cyclic voltammetry studies were used to characterize the AuNPs layer on the electrode surface and the anti-TnT immobilization steps. The QCM-flow immunosensor exhibited good reliability, measuring concentrations of TnT from 0.003 to 0.5 ng mL(-1) in human serum with high linearity (r = 0.989; p < 0.01). The immunosensor exhibited a 7% coefficient of variation and 0.0015 ng mL(-1) limit of detection, indicating a high reproducibility and sensitivity. The proposed QCM nanostructured immunosensor is easy to use and has promising potential in the diagnosis of acute myocardial infarction due to its speed and high sensitivity.
- Published
- 2011
- Full Text
- View/download PDF
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