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Black carbon (BC), the product of incomplete combustion of fossil fuels and biomass, constitutes a significant fraction of the marine organic carbon pool. However, little is known about the possible interactions of BC and marine microorganisms. Here, we report the results of experiments using a standard reference BC material in high concentrations to investigate basic principles of the dynamics of natural bacterial and viral communities with BC particles. We assessed the attachment of viral and bacterial communities using scanning electron, epifluorescence and confocal laser scanning microscopy and shifts in bacterial community composition using 16S rRNA gene denaturing gradient gel electrophoresis (DGGE). In 24-h time-course experiments, BC particles showed a strong potential for absorbing viruses and bacteria. Total viral abundance was reduced, whereas total bacterial abundance was stimulated in the BC treatments. Viral and bacterial abundance on BC particles increased with particle size, whereas the abundances of BC-associated viruses and bacteria per square micrometer surface area decreased significantly with BC particle size. DGGE results suggested that BC has the potential to change bacterial community structure and favour phylotypes related to Glaciecola sp. Our study indicates that BC could influence processes mediated by bacteria and viruses in marine ecosystems.

International audience; Viral abundance and processes in the water column and sediments are well studied for some systems; however, we know relatively little about virus–host interactions on particles and how particles influence these interactions. Here we review virus–prokaryote interactions on inorganic and organic particles in the water column. Profiting from recent methodological progress, we show that confocal laser scanning microscopy in combination with lectin and nucleic acid staining is one of the most powerful methods to visualize the distribution of viruses and their hosts on particles such as organic aggregates. Viral abundance on suspended matter ranges from 105 to 1011 ml–1. The main factors controlling viral abundance are the quality, size and age of aggregates and the exposure time of viruses to aggregates. Other factors such as water residence time likely act indirectly. Overall, aggregates appear to play a role of viral scavengers or reservoirs rather than viral factories. Adsorption of viruses to organic aggregates or inorganic particles can stimulate growth of the free-living prokaryotic community, e.g. by reducing viral lysis. Such mechanisms can affect microbial diversity, food web structure and biogeochemical cycles. Viral lysis of bacterio- and phytoplankton influences the formation and fate of aggregates and can, for example, result in a higher stability of algal flocs. Thus, viruses also influence carbon export; however, it is still not clear whether they short-circuit or prime the biological pump. Throughout this review, emphasis has been placed on defining general problems and knowledge gaps in virus–particle interactions and on providing avenues for further research, particularly those linked to global change.

16 pages, 6 figures, 4 tables, Black carbon (BC) is the carbonaceous residue of the incomplete combustion of fossil fuels and biomass and encompasses a range of chemically heterogeneous substances from partly charred plant material to highly condensed soot aerosols. We addressed the potential role of BC aerosol deposition on marine microbial processes in the ocean by investigating the effects of BC reference material (and its exposure to simulated solar radiation) on viral and bacterial activity in batch cultures with aged seawater. Viruses and bacteria were rapidly adsorbed to BC. No difference between the effect of irradiated and non-irradiated BC on free viral parameters was observed. Bacterial leucine incorporation was higher in the BC treatments than in the BC-free controls. The stimulated bacterial production in the dark BC treatments might be caused by the reduction of viral infection due to adsorption of organic material or by direct use of BC material. Viral production was significantly lower in BC-amended treatments than in BC-free controls, and the estimated fraction of infected cells decreased with increasing BC concentration. Moreover, bacterial activity in the solar-radiation-exposed BC treatments was higher than in the dark BC treatments, indicating that radiation made BC more accessible to bacteria. Our data reveal that BC has the potential to stimulate bacterial activity in the water column, particularly after exposure to solar radiation. Rising BC levels in the atmosphere due to increasing anthropogenic emissions could have far-reaching effects, including potential stimulation of seawater heterotrophy and CO2 production, through its effects on bacteria and viruses. © Inter-Research 2015, Financial support was provided by the European Union in the framework of the BASICS project (EVK3-CT-2002-00078), by the Eur-Oceans Network of Excellence (Project Number WP4-SYSMS-1021), and a Spanish grant from the ministry of education (SB2010-0079) to A.M. J.M.G. is supported by grant STORM from the Spanish MICINN

Black carbon (BC), the product of incomplete combustion of fossil fuels and biomass, constitutes a significant fraction of the marine organic carbon pool. However, little is known about the possible interactions of BC and marine microorganisms. Here, we report the results of experiments using a standard reference BC material in high concentrations to investigate basic principles of the dynamics of natural bacterial and viral communities with BC particles. We assessed the attachment of viral and bacterial communities using scanning electron, epifluorescence and confocal laser scanning microscopy and shifts in bacterial community composition using 16S rRNA gene denaturing gradient gel electrophoresis (DGGE). In 24-h time-course experiments, BC particles showed a strong potential for absorbing viruses and bacteria. Total viral abundance was reduced, whereas total bacterial abundance was stimulated in the BC treatments. Viral and bacterial abundance on BC particles increased with particle size, whereas the abundances of BC-associated viruses and bacteria per square micrometer surface area decreased significantly with BC particle size. DGGE results suggested that BC has the potential to change bacterial community structure and favour phylotypes related to Glaciecola sp. Our study indicates that BC could influence processes mediated by bacteria and viruses in marine ecosystems.