70 results on '"Rachel L. Gomes"'
Search Results
2. RNA-Seq of untreated wastewater to assess COVID-19 and emerging and endemic viruses for public health surveillanceResearch in context
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Stephen R. Stockdale, Adam A. Blanchard, Amit Nayak, Aliabbas Husain, Rupam Nashine, Hemanshi Dudani, C. Patrick McClure, Alexander W. Tarr, Aditi Nag, Ekta Meena, Vikky Sinha, Sandeep K. Shrivastava, Colin Hill, Andrew C. Singer, Rachel L. Gomes, Edward Acheampong, Saravana B. Chidambaram, Tarun Bhatnagar, Umashankar Vetrivel, Sudipti Arora, Rajpal Singh Kashyap, and Tanya M. Monaghan
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COVID-19 ,Endemic viruses ,RNA-Seq ,SARS-CoV-2 ,Sewage surveillance ,Wastewater-based epidemiology ,Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: The COVID-19 pandemic showcased the power of genomic sequencing to tackle the emergence and spread of infectious diseases. However, metagenomic sequencing of total microbial RNAs in wastewater has the potential to assess multiple infectious diseases simultaneously and has yet to be explored. Methods: A retrospective RNA-Seq epidemiological survey of 140 untreated composite wastewater samples was performed across urban (n = 112) and rural (n = 28) areas of Nagpur, Central India. Composite wastewater samples were prepared by pooling 422 individual grab samples collected prospectively from sewer lines of urban municipality zones and open drains of rural areas from 3rd February to 3rd April 2021, during the second COVID-19 wave in India. Samples were pre-processed and total RNA was extracted prior to genomic sequencing. Findings: This is the first study that has utilised culture and/or probe-independent unbiased RNA-Seq to examine Indian wastewater samples. Our findings reveal the detection of zoonotic viruses including chikungunya, Jingmen tick and rabies viruses, which have not previously been reported in wastewater. SARS-CoV-2 was detectable in 83 locations (59%), with stark abundance variations observed between sampling sites. Hepatitis C virus was the most frequently detected infectious virus, identified in 113 locations and co-occurring 77 times with SARS-CoV-2; and both were more abundantly detected in rural areas than urban zones. Concurrent identification of segmented virus genomic fragments of influenza A virus, norovirus, and rotavirus was observed. Geographical differences were also observed for astrovirus, saffold virus, husavirus, and aichi virus that were more prevalent in urban samples, while the zoonotic viruses chikungunya and rabies, were more abundant in rural environments. Interpretation: RNA-Seq can effectively detect multiple infectious diseases simultaneously, facilitating geographical and epidemiological surveys of endemic viruses that could help direct healthcare interventions against emergent and pre-existent infectious diseases as well as cost-effectively and qualitatively characterising the health status of the population over time. Funding: UK Research and Innovation (UKRI) Global Challenges Research Fund (GCRF) grant number H54810, as supported by Research England.
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- 2023
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3. Antimicrobial resistance in dairy slurry tanks: A critical point for measurement and control
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Michelle Baker, Alexander D. Williams, Steven P.T. Hooton, Richard Helliwell, Elizabeth King, Thomas Dodsworth, Rosa María Baena-Nogueras, Andrew Warry, Catherine A. Ortori, Henry Todman, Charlotte J. Gray-Hammerton, Alexander C.W. Pritchard, Ethan Iles, Ryan Cook, Richard D. Emes, Michael A. Jones, Theodore Kypraios, Helen West, David A. Barrett, Stephen J. Ramsden, Rachel L. Gomes, Chris Hudson, Andrew D. Millard, Sujatha Raman, Carol Morris, Christine E.R. Dodd, Jan-Ulrich Kreft, Jon L. Hobman, and Dov J. Stekel
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Antimicrobial resistance ,Dairy ,Slurry ,Mathematical model ,Microbiology ,Environmental sciences ,GE1-350 - Abstract
Waste from dairy production is one of the largest sources of contamination from antimicrobial resistant bacteria (ARB) and genes (ARGs) in many parts of the world. However, studies to date do not provide necessary evidence to inform antimicrobial resistance (AMR) countermeasures. We undertook a detailed, interdisciplinary, longitudinal analysis of dairy slurry waste. The slurry contained a population of ARB and ARGs, with resistances to current, historical and never-used on-farm antibiotics; resistances were associated with Gram-negative and Gram-positive bacteria and mobile elements (ISEcp1, Tn916, Tn21-family transposons). Modelling and experimental work suggested that these populations are in dynamic equilibrium, with microbial death balanced by fresh input. Consequently, storing slurry without further waste input for at least 60 days was predicted to reduce ARB spread onto land, with > 99 % reduction in cephalosporin resistant Escherichia coli. The model also indicated that for farms with low antibiotic use, further reductions are unlikely to reduce AMR further. We conclude that the slurry tank is a critical point for measurement and control of AMR, and that actions to limit the spread of AMR from dairy waste should combine responsible antibiotic use, including low total quantity, avoidance of human critical antibiotics, and choosing antibiotics with shorter half-lives, coupled with appropriate slurry storage.
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- 2022
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4. Lessons for Sustainable Urban Development: Interplay of Construction, Groundwater Withdrawal, and Land Subsidence at Battersea, London
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Vivek Agarwal, Amit Kumar, Zhengyuan Qin, Rachel L. Gomes, and Stuart Marsh
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PSInSAR ,groundwater withdrawal ,underground construction ,sustainable urban development ,Battersea London ,Science - Abstract
The capacity of aquifers to store water and the stability of infrastructure can each be adversely influenced by variations in groundwater levels and subsequent land subsidence. Along the south bank of the River Thames, the Battersea neighbourhood of London is renovating a vast 42-acre (over 8 million sq ft) former industrial brownfield site to become host to a community of homes, shops, bars, restaurants, cafes, offices, and over 19 acres of public space. For this renovation, between 2016 and 2020, a significant number of bearing piles and secant wall piles, with diameters ranging from 450 mm to 2000 mm and depths of up to 60 m, were erected inside the Battersea Power Station. Additionally, there was considerable groundwater removal that caused the water level to drop by 2.55 ± 0.4 m/year between 2016 and 2020, as shown by Environment Agency data. The study reported here used Sentinel-1 C-band radar images and the persistent scatterer interferometric synthetic aperture radar (PSInSAR) methodology to analyse the associated land movement for Battersea, London, during this period. The average land subsidence was found to occur at the rate of −6.8 ± 1.6 mm/year, which was attributed to large groundwater withdrawals and underground pile construction for the renovation work. Thus, this study underscores the critical interdependence between civil engineering construction, groundwater management, and land subsidence. It emphasises the need for holistic planning and sustainable development practices to mitigate the adverse effects of construction on groundwater resources and land stability. By considering the Sustainable Development Goals (SDGs) outlined by the United Nations, particularly Goal 11 (Sustainable Cities and Communities) and Goal 6 (Clean Water and Sanitation), city planners and stakeholders can proactively address these interrelated challenges.
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- 2023
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5. Challenges and considerations of applying nature-based solutions in low- and middle-income countries in Southeast and East Asia
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Alex M. Lechner, Rachel L. Gomes, Lucelia Rodrigues, Matthew J. Ashfold, Sivathass Bannir Selvam, Ee Phin Wong, Christopher M. Raymond, Alexandra Zieritz, Kong Wah Sing, Peter Moug, Lawal Billa, Saut Sagala, Ali Cheshmehzangi, Karen Lourdes, Badrul Azhar, Ruzana Sanusi, Christopher D. Ives, Yu-Ting Tang, David T. Tan, Faith Ka Shun Chan, Tapan Kumar Nath, Nur Aliya Binti Sabarudin, Sarah E. Metcalfe, Natalie M. Gulsrud, Mark Schuerch, Ahimsa Campos-Arceiz, Mark G. Macklin, and Chris Gibbins
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blue-green infrastructure ,china ,ecosystem services ,nature-based solutions ,southeast asia ,sponge cities ,Environmental engineering ,TA170-171 ,Urbanization. City and country ,HT361-384 - Abstract
Low- and middle-income countries in Southeast and East Asia face a range of challenges related to the rapid pace of urbanisation in the region, the scale of pollution, climate change, loss of ecosystem services and associated difficulties for ecological restoration. Possible pathways towards a more sustainable future lie in the applications of nature-based solutions (NBS). However, there is relatively little literature on the application of NBS in the region, particularly Southeast Asia. In this paper we address this gap by assessing the socio-ecological challenges to the application of NBS in the region – one of the most globally biodiverse. We first provide an overview and background on NBS and its underpinnings in biodiversity and ecosystem services. We then present a typology describing five unique challenges for the application of NBS in the region: (1) Characteristics of urbanisation; (2) Biophysical environmental and climatic context; (3) Environmental risks and challenges for restoration; (4) Human nature relationships and conflicts; and (5) Policy and governance context. Exploiting the opportunities through South-South and North-South collaboration to address the challenges of NBS in Southeast and East Asia needs to be a priority for government, planners and academics. Highlights Most research on Nature-Based Solutions (NBS) is in high income nations with low population growth rates and regulated urban planning.; Urban blue-green infrastructure is being degraded in low and middle-income Southeast and East Asian countries.; Applications of NBS in the region need to address the unique socio-ecological challenges.; We provide an overview of key knowledge gaps to support the implementation of NBS.;
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- 2020
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6. Mathematical modelling of earlier stages of COVID-19 transmission dynamics in Ghana
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Edward Acheampong, Eric Okyere, Samuel Iddi, Joseph H.K. Bonney, Joshua Kiddy K. Asamoah, Jonathan A.D. Wattis, and Rachel L. Gomes
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Transmission model ,SARS-CoV-2 ,Uncertainty ,Sensitivity ,Mathematical analysis ,Monte Carlo-least squares ,Physics ,QC1-999 - Abstract
In late 2019, a novel coronavirus, the SARS-CoV-2 outbreak was identified in Wuhan, China and later spread to every corner of the globe. Whilst the number of infection-induced deaths in Ghana, West Africa are minimal when compared with the rest of the world, the impact on the local health service is still significant. Compartmental models are a useful framework for investigating transmission of diseases in societies. To understand how the infection will spread and how to limit the outbreak. We have developed a modified SEIR compartmental model with nine compartments (CoVCom9) to describe the dynamics of SARS-CoV-2 transmission in Ghana. We have carried out a detailed mathematical analysis of the CoVCom9, including the derivation of the basic reproduction number, R0. In particular, we have shown that the disease-free equilibrium is globally asymptotically stable when R0
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- 2022
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7. Top-Down Characterization of an Antimicrobial Sanitizer, Leading From Quenchers of Efficacy to Mode of Action
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Franziska Wohlgemuth, Rachel L. Gomes, Ian Singleton, Frankie J. Rawson, and Simon V. Avery
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antimicrobial sanitizer ,mode of action ,oxidative stress ,methionine ,fungi ,yeast ,Microbiology ,QR1-502 - Abstract
We developed a top-down strategy to characterize an antimicrobial, oxidizing sanitizer, which has diverse proposed applications including surface-sanitization of fresh foods, and with benefits for water resilience. The strategy involved finding quenchers of antimicrobial activity then antimicrobial mode of action, by identifying key chemical reaction partners starting from complex matrices, narrowing down reactivity to specific organic molecules within cells. The sanitizer electrolyzed-water (EW) retained partial fungicidal activity against the food-spoilage fungus Aspergillus niger at high levels of added soils (30–750 mg mL–1), commonly associated with harvested produce. Soil with high organic load (98 mg g–1) gave stronger EW inactivation. Marked inactivation by a complex organics mix (YEPD medium) was linked to its protein-rich components. Addition of pure proteins or amino acids (≤1 mg mL–1) fully suppressed EW activity. Mechanism was interrogated further with the yeast model, corroborating marked suppression of EW action by the amino acid methionine. Pre-culture with methionine increased resistance to EW, sodium hypochlorite, or chlorine-free ozonated water. Overexpression of methionine sulfoxide reductases (which reduce oxidized methionine) protected against EW. Fluoroprobe-based analyses indicated that methionine and cysteine inactivate free chlorine species in EW. Intracellular methionine oxidation can disturb cellular FeS-clusters and we showed that EW treatment impairs FeS-enzyme activity. The study establishes the value of a top-down approach for multi-level characterization of sanitizer efficacy and action. The results reveal proteins and amino acids as key quenchers of EW activity and, among the amino acids, the importance of methionine oxidation and FeS-cluster damage for antimicrobial mode-of-action.
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- 2020
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8. Comparative Study of Groundwater-Induced Subsidence for London and Delhi Using PSInSAR
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Vivek Agarwal, Amit Kumar, David Gee, Stephen Grebby, Rachel L. Gomes, and Stuart Marsh
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PS-InSAR ,Sentinel-1 ,surface subsidence ,groundwater ,London ,NCT-Delhi ,Science - Abstract
Groundwater variation can cause land-surface movement, which in turn can cause significant and recurrent harm to infrastructure and the water storage capacity of aquifers. The capital cities in the England (London) and India (Delhi) are witnessing an ever-increasing population that has resulted in excess pressure on groundwater resources. Thus, monitoring groundwater-induced land movement in both these cities is very important in terms of understanding the risk posed to assets. Here, Sentinel-1 C-band radar images and the persistent scatterer interferometric synthetic aperture radar (PSInSAR) methodology are used to study land movement for London and National Capital Territory (NCT)-Delhi from October 2016 to December 2020. The land movement velocities were found to vary between −24 and +24 mm/year for London and between −18 and +30 mm/year for NCT-Delhi. This land movement was compared with observed groundwater levels, and spatio-temporal variation of groundwater and land movement was studied in conjunction. It was broadly observed that the extraction of a large quantity of groundwater leads to land subsidence, whereas groundwater recharge leads to uplift. A mathematical model was used to quantify land subsidence/uplift which occurred due to groundwater depletion/rebound. This is the first study that compares C-band PSInSAR-derived land subsidence response to observed groundwater change for London and NCT-Delhi during this time-period. The results of this study could be helpful to examine the potential implications of ground-level movement on the resource management, safety, and economics of both these cities.
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- 2021
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9. Monitoring of Ground Movement and Groundwater Changes in London Using InSAR and GRACE
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Vivek Agarwal, Amit Kumar, Rachel L. Gomes, and Stuart Marsh
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PSInSAR ,GRACE ,surface subsidence ,groundwater ,London ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Groundwater-induced land movement can cause damage to property and resources, thus its monitoring is very important for the safety and economics of a city. London is a heavily built-up urban area and relies largely on its groundwater resource and thus poses the threat of land subsidence. Interferometric Synthetic Aperture Radar (InSAR) can facilitate monitoring of land movement and Gravity Recovery and Climate Experiment (GRACE) gravity anomalies can facilitate groundwater monitoring. For London, no previous study has investigated groundwater variations and related land movement using InSAR and GRACE together. In this paper, we used ENVISAT ASAR C-band SAR images to obtain land movement using Persistent Scatterer InSAR (PSInSAR) technique and GRACE gravity anomalies to obtain groundwater variations between December 2002 and December 2010 for central London. Both experiments showed long-term, decreasing, complex, non-linear patterns in the spatial and temporal domain. The land movement values varied from −6 to +6 mm/year, and their reliability was validated with observed Global Navigation Satellite System (GNSS) data, by conducting a two-sample t-test. The average groundwater loss estimated from GRACE was found to be 9.003 MCM/year. The ground movement was compared to observed groundwater values obtained from various boreholes around central London. It was observed that when large volumes of groundwater is extracted then it leads to land subsidence, and when groundwater is recharged then surface uplift is witnessed. The results demonstrate that InSAR and GRACE complement each other and can be an excellent source of monitoring groundwater for hydrologists.
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- 2020
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10. Towards the Continuous Hydrothermal Synthesis of ZnO@Mg2Al-CO3 Core-Shell Composite Nanomaterials
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Ian Clark, Jacob Smith, Rachel L. Gomes, and Edward Lester
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continuous hydrothermal synthesis ,layered double hydroxide ,composite ,nano hybrid structures ,Ultraviolet (UV) properties ,Chemistry ,QD1-999 - Abstract
Core-shell Zinc Oxide/Layered Double Hydroxide (ZnO@LDH) composite nanomaterials have been produced by a one-step continuous hydrothermal synthesis process, in an attempt to further enhance the application potential of layered double hydroxide (LDH) nanomaterials. The synthesis involves two hydrothermal reactors in series with the first producing a ZnO core and the second producing the Mg2Al-CO3 shell. Crystal domain length of single phase ZnO and composite ZnO was 25 nm and 42 nm, respectively. The ZnO@LDH composite had a specific surface area of 76 m2 g−1, which was larger than ZnO or Mg2Al-CO3 when produced separately (53 m2 g−1 and 58 m2 g−1, respectively). The increased specific surface area is attributed to the structural arrangement of the Mg2Al-CO3 in the composite. Platelets are envisaged to nucleate on the core and grow outwards, thus reducing the face–face stacking that occurs in conventional Mg2Al-CO3 synthesis. The Mg/Al ratio in the single phase LDH was close to the theoretical ratio of 2, but the Mg/Al ratio in the composite was 1.27 due to the formation of Zn2Al-CO3 LDH from residual Zn2+ ions. NaOH concentration was also found to influence Mg/Al ratio, with lower NaOH resulting in a lower Mg/Al ratio. NaOH concentration also affected morphology and specific surface area, with reduced NaOH content in the second reaction stage causing a dramatic increase in specific surface area (> 250 m2 g−1). The formation of a core-shell composite material was achieved through continuous synthesis; however, the final product was not entirely ZnO@Mg2Al-CO3. The product contained a mixture of ZnO, Mg2Al-CO3, Zn2Al-CO3, and the composite material. Whilst further optimisation is required in order to remove other crystalline impurities from the synthesis, this research acts as a stepping stone towards the formation of composite materials via a one-step continuous synthesis.
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- 2020
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11. Modelling emerging pollutants in wastewater treatment: A Case study using the pharmaceutical 17α-ethinylestradiol.
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Edward Acheampong, Ian L. Dryden, Jonathan A. D. Wattis, Jamie Twycross, Mark D. Scrimshaw, and Rachel L. Gomes
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- 2019
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12. Considerations, challenges and opportunities when developing data-driven models for process manufacturing systems.
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Oliver J. Fisher, Nicholas James Watson, Josep Escrig, Rob Witt, Laura Porcu, Darren Bacon, Martin Rigley, and Rachel L. Gomes
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- 2020
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13. Adsorption studies and effect of heat treatment on porous glass microspheres
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Rachel L. Gomes, Edward Lester, Abul Arafat, Ifty Ahmed, Sabrin A. Samad, and Rebecca Ferrari
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Porous microspheres ,Adsorption ,Materials science ,Chemical engineering ,General Materials Science ,Porous glass ,Microsphere - Published
- 2021
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14. Delivering on sustainable development goals in wastewater reuse for agriculture: Initial prioritization of emerging pollutants in the Tula Valley, Mexico
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Andrea-Lorena Garduño-Jiménez, Juan-Carlos Durán-Álvarez, Catharine A. Ortori, Salah Abdelrazig, David A. Barrett, and Rachel L. Gomes
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Environmental Engineering ,Ecological Modeling ,Pollution ,Waste Management and Disposal ,Water Science and Technology ,Civil and Structural Engineering - Published
- 2023
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15. Challenges and considerations of applying nature-based solutions in low- and middle-income countries in Southeast and East Asia
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Faith Ka Shun Chan, Yu-Ting Tang, Natalie Marie Gulsrud, Rachel L. Gomes, Christopher M. Raymond, Lawal Billa, Sivathass Bannir Selvam, Karen T. Lourdes, Ruzana Sanusi, Alex M. Lechner, Ahimsa Campos-Arceiz, Peter Moug, Ali Cheshmehzangi, Saut Sagala, Badrul Azhar, Chris Gibbins, M. J. Ashfold, Christopher D. Ives, Lucelia Rodrigues, Alexandra Zieritz, Sarah E. Metcalfe, Tapan Kumar Nath, Nur Aliya Binti Sabarudin, Mark G. Macklin, David T. Tan, Mark Schuerch, Ee Phin Wong, Kong Wah Sing, Ecosystems and Environment Research Programme, Human-Nature Transformations Research Group, Helsinki Institute of Sustainability Science (HELSUS), Department of Economics and Management, and Helsinki Institute of Urban and Regional Studies (Urbaria)
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Urbanization. City and country ,010504 meteorology & atmospheric sciences ,Environmental engineering ,Context (language use) ,010501 environmental sciences ,01 natural sciences ,Ecosystem services ,Urbanization ,East Asia ,L712 Human and Social Geography of Asia ,Restoration ecology ,Environmental planning ,1172 Environmental sciences ,nature-based solutions ,0105 earth and related environmental sciences ,C181 Biodiversity ,Government ,Corporate governance ,southeast asia ,TA170-171 ,Geography ,Scale (social sciences) ,sponge cities ,HT361-384 ,china ,ecosystem services ,General Economics, Econometrics and Finance ,blue-green infrastructure - Abstract
Low- and middle-income countries in Southeast and East Asia face a range of challenges related to the rapid pace of urbanisation in the region, the scale of pollution, climate change, loss of ecosystem services and associated difficulties for ecological restoration. Possible pathways towards a more sustainable future lie in the applications of nature-based solutions (NBS). However, there is relatively little literature on the application of NBS in the region, particularly Southeast Asia. In this paper we address this gap by assessing the socio-ecological challenges to the application of NBS in the region – one of the most globally biodiverse. We first provide an overview and background on NBS and its underpinnings in biodiversity and ecosystem services. We then present a typology describing five unique challenges for the application of NBS in the region: (1) Characteristics of urbanisation; (2) Biophysical environmental and climatic context; (3) Environmental risks and challenges for restoration; (4) Human nature relationships and conflicts; and (5) Policy and governance context. Exploiting the opportunities through South-South and North-South collaboration to address the challenges of NBS in Southeast and East Asia needs to be a priority for government, planners and academics. Highlights Most research on Nature-Based Solutions (NBS) is in high income nations with low population growth rates and regulated urban planning.; Urban blue-green infrastructure is being degraded in low and middle-income Southeast and East Asian countries.; Applications of NBS in the region need to address the unique socio-ecological challenges.; We provide an overview of key knowledge gaps to support the implementation of NBS.
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- 2020
16. Translating wastewater reuse for irrigation from OECD Guidelines: Tramadol sorption and desorption in soil-water matrices
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Andrea-Lorena Garduño-Jiménez, Juan Carlos Durán-Álvarez, Ruth Silvana Cortés-Lagunes, David A. Barrett, and Rachel L. Gomes
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Environmental Engineering ,Agricultural Irrigation ,Health, Toxicology and Mutagenesis ,Public Health, Environmental and Occupational Health ,Water ,General Medicine ,General Chemistry ,Wastewater ,Pollution ,Calcium Chloride ,Soil ,Environmental Chemistry ,Clay ,Soil Pollutants ,Adsorption ,Organisation for Economic Co-Operation and Development ,Tramadol - Abstract
Treated and untreated wastewater is often used for agricultural irrigation and, despite the many benefits of this practice, it poses the risk of biologically active chemical pollutants (such as pharmaceuticals, like tramadol) entering the environment. The partitioning of tramadol between soil/water at environmentally relevant concentrations is important to understand its environmental toxicity. Kinetics and isotherm sorption studies based on the Organisation for Economic Cooperation and Development (OECD) 106 Guideline were undertaken, ensuring comparability to previous studies. Studies were undertaken in three soils of different characteristics using aqueous concentrations of tramadol from 500 ng L
- Published
- 2022
17. Comparative study of groundwater-induced subsidence for london and delhi using psinsar
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Stuart Marsh, Rachel L. Gomes, Stephen Grebby, Amit Kumar, Vivek Agarwal, and David Gee
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Hydrology ,geography ,education.field_of_study ,geography.geographical_feature_category ,PS-InSAR ,Sentinel-1 ,surface subsidence ,groundwater ,London ,NCT-Delhi ,Science ,Water storage ,Population ,Aquifer ,Subsidence ,Groundwater recharge ,Interferometric synthetic aperture radar ,Groundwater-related subsidence ,General Earth and Planetary Sciences ,Environmental science ,education ,Groundwater - Abstract
Groundwater variation can cause land-surface movement, which in turn can cause significant and recurrent harm to infrastructure and the water storage capacity of aquifers. The capital cities in the England (London) and India (Delhi) are witnessing an ever-increasing population that has resulted in excess pressure on groundwater resources. Thus, monitoring groundwater-induced land movement in both these cities is very important in terms of understanding the risk posed to assets. Here, Sentinel-1 C-band radar images and the persistent scatterer interferometric synthetic aperture radar (PSInSAR) methodology are used to study land movement for London and National Capital Territory (NCT)-Delhi from October 2016 to December 2020. The land movement velocities were found to vary between −24 and +24 mm/year for London and between −18 and +30 mm/year for NCT-Delhi. This land movement was compared with observed groundwater levels, and spatio-temporal variation of groundwater and land movement was studied in conjunction. It was broadly observed that the extraction of a large quantity of groundwater leads to land subsidence, whereas groundwater recharge leads to uplift. A mathematical model was used to quantify land subsidence/uplift which occurred due to groundwater depletion/rebound. This is the first study that compares C-band PSInSAR-derived land subsidence response to observed groundwater change for London and NCT-Delhi during this time-period. The results of this study could be helpful to examine the potential implications of ground-level movement on the resource management, safety, and economics of both these cities.
- Published
- 2021
18. Evaluation of photoanode materials used in biophotovoltaic systems for renewable energy generation
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Geoffrey Rivers, Helena I. Gomes, Ricky Wildman, Maira Anam, and Rachel L. Gomes
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Materials science ,Biophotovoltaic ,Renewable Energy, Sustainability and the Environment ,business.industry ,Photovoltaic system ,Energy Engineering and Power Technology ,chemistry.chemical_element ,Nanotechnology ,Electrochemistry ,Renewable energy ,Anode ,Fuel Technology ,chemistry ,Electrode ,business ,Carbon ,Power density - Abstract
Biological photovoltaic (BPV) cells are living solar panels capable of producing clean energy by extracting electrons from sunlight (in daytime) and stored carbon in microbial cells (during the night or on cloudy days), irrespective of the organic substrate supply. The physicochemical properties of anode surfaces harbouring microbial communities in BPV systems influence the electrochemical charge transfer rate at the electrode. Hence, these properties play a significant role in regulating the kinetics of metabolic reactions in the biotic compartment while providing an electron transfer path. Various electrically conductive materials have been explored as solid-state anodes to improve the power output and economic viability of BPV systems. However, the current systems still suffer from low power density due to electrodes' electrochemical limitations and a lack of systematic optimization of the device. This review provides a comprehensive insight into the recent developments in different anode materials, their dimensional structure, and their impact on the performance of BPV systems in the last two decades. Moreover, the existing limitations of electrode materials in BPV systems are summarized, and outlooks for future anode advancements are foreseen.
- Published
- 2021
19. Intelligent Resource Use to Deliver Waste Valorisation and Process Resilience in Manufacturing Environments : Moving towards sustainable process manufacturing
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Nicholas James Watson, Josep Escrig, Oliver Fisher, and Rachel L. Gomes
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Receivership ,010405 organic chemistry ,Computer science ,Process (engineering) ,Process Chemistry and Technology ,Circular economy ,Cognitive computing ,Metals and Alloys ,010402 general chemistry ,01 natural sciences ,Manufacturing engineering ,0104 chemical sciences ,Process manufacturing ,Electrochemistry ,Valorisation ,Cloud manufacturing ,Resilience (network) - Abstract
© 2020 Johnson Matthey Circular economy (CE) thinking has emerged as a route to sustainable manufacture, with related cradle-to-cradle implications requiring implementation from the design stage. The challenge lies in moving manufacturing environments away from the traditional linear economy paradigm, where materials, energy and water have often been designed to move out of the system and into receivership of waste management bodies after use. Recent applications of industrial digital technologies (IDTs: for example internet of things, data-driven modelling, cyber-physical systems, cloud manufacturing, cognitive computing) to manufacturing may be instrumental in transforming manufacturing from linear to circular. However, although IDTs and CE have been the focus of intensive research, there is currently limited research exploring the relationship between IDTs and the CE and how the former may drive the implementation of CE. This article aims to close the knowledge gap by exploring how an IDT (data-driven modelling) may facilitate and advance CE principles within process manufacturing systems, specifically waste valorisation and process resilience. These applications are then demonstrated through two real-world manufacturing case studies: (a) minimising resource consumption of industrial cleaning processes and (b) transforming wastewater treatment plants (WWTPs) into manufacturing centres.
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- 2020
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20. Exploring the Efficacy of Nile Red in Microplastic Quantification: A Costaining Approach
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Rachel L. Gomes, Matthew F. Johnson, Amanda Burson, C. Paul Nathanail, Thomas Stanton, and Teresa Needham
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Microplastics ,Ecology ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,Nile red ,02 engineering and technology ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,01 natural sciences ,Pollution ,chemistry.chemical_compound ,Geography ,chemistry ,Environmental Chemistry ,0210 nano-technology ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Water Science and Technology ,Diversity (politics) ,media_common - Abstract
The presence of microplastic particles (
- Published
- 2019
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21. An alternative dynamic modelling approach to understand the removal of emerging pollutants in wastewater treatment plants
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Rachel L. Gomes, Edward Acheampong, Ian L. Dryden, and Jonathan A. D. Wattis
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Pollutant ,Hydraulic retention time ,Correlation analysis ,Environmental engineering ,Water environment ,Environmental science ,Sewage treatment ,Activated sludge model ,Dynamic modelling ,Effluent - Abstract
Understanding emerging pollutant (EP) dynamics in wastewater treatment plants (WWTPs) is key to improved processing. The main route by which EPs enter the water environment is the WWTP. Data to parametrise existing complex wastewater treatment models from operational WWTP is of limited availability. In particular, to help gain insight into the dynamics of EP, data on the activated sludge model developed by the International Water Association (IWA) for xenobiotic (ASM-X) is sparse. Also, sampling both influent and effluent concentrations of pollutants at the same time fails to take into account the hydraulic retention time (HRT) and plug flow across the WWTP. This case study considered three EPs, namely trimethoprim (TRI), oseltamivir (OSE) and doxycycline (DOX). We investigated the link between the relationship of the influent and effluent load to HRT across the WWTP using correlation analysis. The results suggest that HRT of WWTP have a wider range than those reported. Also, we proposed an alternative modelling approach, which describes the full-scale WWTP as one process. The modelling results show a good fit (based on the likelihood ratio test at a significance level of α= 0.05) compared to the measured effluent EP concentrations.
- Published
- 2021
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22. Sorption, separation and recycling of ammonium in agricultural soils: A viable application for magnetic biochar?
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Rachel L. Gomes, Max D. Gillingham, H. M. West, and Rebecca Ferrari
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Pollutant ,Environmental Engineering ,Environmental remediation ,Magnetic Phenomena ,Environmental engineering ,Sorption ,Pollution ,Incineration ,Soil ,Wastewater ,Nutrient pollution ,Greenhouse gas ,Charcoal ,Biochar ,Ammonium Compounds ,Environmental Chemistry ,Environmental science ,Soil Pollutants ,Waste Management and Disposal ,Ecosystem - Abstract
Recent research on the magnetisation of biochar, a carbon-based material that can be used as a sorbent, has opened novel opportunities in the field of environmental remediation, as incorporating magnetic particles into biochar can simplify subsequent separation. This could offer a sustainable circular economy-based solution in two areas of waste management; firstly, pyrolysis of agricultural waste for magnetic biochar synthesis could reduce greenhouse gas emissions derived from traditional agricultural waste processing, such as landfill and incineration, while secondly, application of magnetic biochar to remove excess nitrogen from soils (made possible through magnetic separation) could provide opportunities for this pollutant to be used as a recycled fertiliser. While sorption of pollutants by magnetic biochar has been researched in wastewater, few studies have investigated magnetic biochar use in polluted soils. Nitrogen pollution (e.g. NH4+), stemming from agricultural fertiliser management, is a major environmental and economic issue that could be significantly reduced before losses from soils occur. This review demonstrates that the use of magnetic biochar tailored to NH4+ adsorption has potential to remove (and recycle for reuse) excess nitrogen from soils. Analysis of research into recovery of NH4+ by sorption/desorption, biochar magnetisation and biochar-soil interactions, suggests that this is a promising application, but a more cohesive, interdisciplinary approach is called for to elucidate its feasibility. Furthermore, research shows variable impacts of biochar upon soil chemistry and biology, such as pH and microbial diversity. Considering wide concerns surrounding global biodiversity depletion, a more comprehensive understanding of biochar-soil dynamics is required to protect and support soil ecosystems. Finally, addressing research gaps, such as optimisation and scaling-up of magnetic biochar synthesis, would benefit from systems thinking approaches, ensuring the many complex considerations across science, industry, policy and economics are connected by circular-economy principles.
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- 2021
23. Understanding Layered Double Hydroxide properties as sorbent materials for removing organic pollutants from environmental waters
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Orla Williams, Rachel L. Gomes, Edward Lester, and Amy-Louise Johnston
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Pollutant ,Aqueous solution ,Sorbent ,Ion exchange ,Environmental remediation ,Process Chemistry and Technology ,Layered double hydroxides ,Sorption ,02 engineering and technology ,010501 environmental sciences ,engineering.material ,021001 nanoscience & nanotechnology ,01 natural sciences ,Pollution ,chemistry.chemical_compound ,chemistry ,Environmental chemistry ,engineering ,Hydroxide ,Chemical Engineering (miscellaneous) ,0210 nano-technology ,Waste Management and Disposal ,0105 earth and related environmental sciences - Abstract
© 2020 Georg Thieme Verlag. All rights reserved. Emerging contaminants (ECs) are a group of anthropogenic organic pollutants known to have a host of adverse environmental and health implications. The removal of such pollutants from aqueous environments to ensure water is of a quality fit for reuse is therefore highly important and gaining considerable interest. Whilst there are multiple approaches used for EC remediation from water matrices, sorption using layered double hydroxides (LDHs) has been reported as a suitable technique. LDHs are interesting clay-like materials with numerous properties which lend LDHs to being suitable sorbent materials. Such properties include low toxicity, anion exchange capacity and tuneable structures through possible variations in metals, anions and preparation techniques. To design a successful sorbent material, it is important to fully understand the materials structure-property-function relationship. However, in the application of LDHs as sorbent materials for the removal of organic pollutants, this relationship is not well understood. Hence the ability to design bespoke high-performing LDH sorbent material is currently limited. This review considers the impact of structure and related physiochemical properties of LDHs on their sorption capacity for the removal of organic pollutants from water matrices. Methyl Orange (MO) is first considered as a model pollutant, with the importance of the characteristics of the metal layers, interlayer anions and resulting textual properties of LDHs on reported sorption capacity observed. A comparison is then made between the findings from the MO case study and for the sorption of other organic pollutants using LDHs, with a particular focus on pharmaceuticals. Finally, the role of environmental conditions and considerations linked to possible commercial applications are discussed, with recommendations made for future work.
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- 2021
24. Water Sustainability and Hydrological Extremes : Quantity, Quality, and Security
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Manish Kumar, Vivek Agarwal, Rachel L Gomes, Durga Prasad Panday, Manish Kumar, Vivek Agarwal, Rachel L Gomes, and Durga Prasad Panday
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- Water-supply--Environmental aspects, Water quality--Environmental aspects, Hydrology
- Abstract
Water Sustainability and Hydrological Extremes: Quantity, Quality, and Security presents a study for the mitigation of hydrological extremes through case studies. The focus is on the effect of extremes on water quality and the fate of geogenic, microbial, anthropogenic pollutants in the water cycle, and the interaction of water quality and quantity variations. The book integrates rapidly growing diverse topics, such as co-occurrence variation in water quantity and quality, water supply, sanitation, and hygiene. Stakeholders'participation and raising awareness for sustainable management strategies for hydrological extremes and water management systems is also covered.This thorough guide serves as a pillar to postgraduate students and researchers as it's centered on discovering remediation and natural attenuation of hydrological extremes with a special emphasis on present and future challenges. - Includes the latest research developments on issues affecting water sustainability and water supply, sanitation, and hydrological extremes - Offers summaries and recommendations at the end of each chapter to highlight key information in a simplified manner - Contains illustrative diagrams and graphical abstracts to summarize dense scientific conclusions
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- 2024
25. Multiple target data-driven models to enable sustainable process manufacturing: An industrial bioprocess case study
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Nicholas James Watson, Rachel L. Gomes, Oliver Fisher, Darren Bacon, Laura Porcu, and Martin Rigley
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Computer science ,Process (engineering) ,business.industry ,Renewable Energy, Sustainability and the Environment ,020209 energy ,Strategy and Management ,05 social sciences ,02 engineering and technology ,Building and Construction ,Reuse ,Industrial and Manufacturing Engineering ,Data-driven ,Process manufacturing ,Mean absolute percentage error ,Manufacturing ,Sustainability ,050501 criminology ,0202 electrical engineering, electronic engineering, information engineering ,Biochemical engineering ,Bioprocess ,business ,0505 law ,General Environmental Science - Abstract
Process manufacturing industries constantly strive to make their processes increasingly sustainable from an environmental and economic perspective. A manufacturing system model is a powerful tool to holistically evaluate various manufacturing configurations to determine the most sustainable one. Previously models of process manufacturing systems are typically single target models, trained to fit and/or predict data for a single output variable. However, process manufacturing systems produce a variety of outputs with multiple, sometimes contradictory, sustainability implications. These systems require multiple target models to find the most sustainable manufacturing configuration which considers all outputs. A novel bioprocess that treats process wastewaters to reduce pollutant load for reuse, while simultaneously generating energy in the form of biogas was studied. Multiple target models were developed to predict the percentage removal of chemical oxygen demand and total suspended solids, in addition to the biogas (as volume of methane) produced. Predictions from the models were able to reduce wastewater treatment costs by 17.0%. Eight models were developed and statistically evaluated by the coefficient of determination (R2), normalised root mean square error (nRMSE) and mean absolute percentage error (MAPE). An artificial neural network model built following the ensemble of regressor chains demonstrated the best multi target model performance, averaged across all the bioprocess’s outputs (R2 of 0.99, nRMSE of 0.02, MAPE of 1.74). The model is able to react to new regulations and legislation and/or variations in company, sector, world circumstances to provide the most up to date sustainable manufacturing configuration.
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- 2021
26. A Model to Investigate the Impact of Farm Practice on Antimicrobial Resistance in UK Dairy Farms
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John R. King, Christopher W. Lanyon, Dov J. Stekel, and Rachel L. Gomes
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0301 basic medicine ,Farms ,medicine.drug_class ,Slurry ,General Mathematics ,030106 microbiology ,Antibiotics ,Population ,Immunology ,Biology ,Antimicrobial resistance ,Models, Biological ,Modelling ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Antibiotic resistance ,Drug Resistance, Bacterial ,medicine ,Animals ,Animal Husbandry ,education ,Differential impact ,General Environmental Science ,Pharmacology ,education.field_of_study ,Bacteria ,business.industry ,General Neuroscience ,Chemical fate ,Agriculture ,Animal husbandry ,United Kingdom ,Biotechnology ,Anti-Bacterial Agents ,Multiple drug resistance ,Dairying ,030104 developmental biology ,Computational Theory and Mathematics ,Original Article ,business ,General Agricultural and Biological Sciences ,Ordinary differential equations - Abstract
The ecological and human health impact of antibiotic use and the related antimicrobial resistance (AMR) in animal husbandry is poorly understood. In many countries, there has been considerable pressure to reduce overall antibiotic use in agriculture or to cease or minimise use of human critical antibiotics. However, a more nuanced approach would consider the differential impact of use of different antibiotic classes; for example, it is not known whether reduced use of bacteriostatic or bacteriolytic classes of antibiotics would be of greater value. We have developed an ordinary differential equation model to investigate the effects of farm practice on the spread and persistence of AMR in the dairy slurry tank environment. We model the chemical fate of bacteriolytic and bacteriostatic antibiotics within the slurry and their effect on a population of bacteria, which are capable of resistance to both types of antibiotic. Through our analysis, we find that changing the rate at which a slurry tank is emptied may delay the proliferation of multidrug-resistant bacteria by up to five years depending on conditions. This finding has implications for farming practice and the policies that influence waste management practices. We also find that, within our model, the development of multidrug resistance is particularly sensitive to the use of bacteriolytic antibiotics, rather than bacteriostatic antibiotics, and this may be cause for controlling the usage of bacteriolytic antibiotics in agriculture.
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- 2021
27. Comparison of groundwater induced Land subsidence in London and Delhi using PSInSAR
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Stuart Marsh, Rachel L. Gomes, Vivek Agarwal, and Amit Kumar
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Hydrology ,Geology ,Groundwater - Abstract
Unrestrained urbanisation and rapid land use land cover changes can impact underlying aquifer systems, resulting in the instances of land subsidence. Thus, monitoring of groundwater induced land movement is an important part of environmental information systems and helps maintain the safety and economics of a city. Interferometric Synthetic Aperture Radar (InSAR) can facilitate monitoring of land movement and observed boreholes can facilitate groundwater monitoring. In this study, we used Sentinel-1 radar images to obtain land movement using Persistent Scatterer InSAR (PSInSAR) technique in the ENVI SARscape software package. The land movement has been studied between October 2016 and October 2020, using 98 SAR images for Delhi and 100 SAR images for London. This is the first time that such a comparison has been made between these two great cities. The land movement InSAR velocity maps for both these cities showed long-term, decreasing, complex, non-linear patterns in the spatial and temporal domain, with few areas of heave and a fair amount of subsidence. The land movement varied between -18 mm/year to +20 mm/year for Delhi and -10 mm/year to +9 mm/year for London. The underground metro construction played an important role in controlling the land movement pattern of Delhi. Its Phase III metro line was mostly built between the years 2015 and 2020 with 28 underground stations, 11 route extension and 3 new lines, namely Pink, Magenta and Grey lines. Similarly, construction of the northern line extension, the Channel Tunnel Rail Link and the Lee tunnel directly affected the land movement pattern of London. In addition, the ground movement was compared to observed groundwater values obtained from various boreholes across both these cities. The extraction and recharge of groundwater to meet the demands of an ever-increasing population directly affected the land movement patterns in both cities. It was observed that when large volumes of groundwater are extracted, then it leads to land subsidence, and when groundwater is recharged, then surface uplift is witnessed. The reasons for this subsidence pattern are consistent for both these cities in a few places, while they are completely different at some other locations. Delhi has been declared as groundwater critical zone by the government of India, while London is not under critical zone. Delhi is one of the most exploited city with regards to groundwater, owing to its urban fabric and ever-increasing population, and these results reflect that. A similar pressure is exerted on London’s groundwater by its ever-increasing population, which is not recognised by a critical status but is borne out by these results. Along with the groundwater extraction, sub-surface geology, underground construction, and metro extensions all contribute to form a complex land movement pattern. This study can serve as a guideline to government agencies in identifying the areas and extent of groundwater induced land subsidence, so that they can take proper steps to mitigate it.
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- 2021
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28. From rivers to retailers: using cross-sector stakeholder engagement to broaden dissemination and guide future research
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Rachel L. Gomes, Thomas Stanton, Jason Weeks, Paul Kay, and Matthew F. Johnson
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Cross sector ,business.industry ,Stakeholder engagement ,Public relations ,business - Abstract
Concern for the fate and impacts of plastic waste has motivated cross-sector engagement with the environment and society’s impact on it. Though efforts to minimise plastic pollution should not be discouraged, it is important that such efforts do not exacerbate the environmental impacts associated with plastic alternatives; acknowledge that plastic per se is not the root of the plastic pollution problem; and recognise that environmentally conscious consumption is a privilege not currently afforded to all. Cross-sector communication and cooperation can maximise the impact of plastic pollution research and are vital tools in ensuring research can inform positive change. Here we report on the use of stakeholder engagement spanning UK industry, government, not-for-profit organisations and academia to share knowledge, motivations and priorities, in order to broaden research impact beyond academia.Informed by our own work, microplastic researchers at the University of Nottingham hosted a cross-sector workshop to recognise evidence requirements, focus key questions, highlight misunderstandings and ultimately identify knowledge gaps across multiple sectors. This engagement identified key areas for improvement from the scientific community in order to better inform and engage decision makers. These included: a need for greater clarity from the scientific community as to the extent of the plastic pollution problem; communication of the implications of methodological inconsistencies in the science that informs industry; and the importance of placing the impacts of plastic pollution within the context of broader environmental quality for non-scientific stakeholders.This workshop and engagement led to outputs that included: the writing of a policy brief; the writing of an opinion article on the topic of plastic pollution with authors from not-for profits, the wastewater industry and government organisations; and the public dissemination of these activities through press releases, articles for The Conversation, and their reproductions in UK news media. These outputs are designed to guide and inform individuals, industry, decision makers, and future research.Concern for the problems posed by plastic pollution presents a generational opportunity for science to inform industries, governments and consumers, and enthuse their environmental action beyond plastic pollution. Our work highlights the value of considering, and where feasible engaging with, these stakeholders with environmental research from conception to dissemination.
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- 2021
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29. Contributors
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Martha B. Adaime, Gabriela Aguirre-Martinez, Ângela Almeida, Nikiforos A. Alygizakis, Patrícia Anacleto, Rosa María Baena-Nogueras, Juan Carlos Balasch, Beatriz Barbosa Moreno, Ricardo Barra, Ricardo Beiras, Anna Białk-Bielińska, Miriam Biel-Maeso, Magda Caban, Jose A. Castro-Gutiérrez, Augusto Cesar, Walid Chmengui, Luiza Costa Melo, Silvana Cortés, Fernando Sanzi Cortez, Tainá Gárcia da Fonseca, Lorena da Silva Sousa, Júlia A. de Oliveira, Rômulo de O. Schwaickhardt, Denis Moledo de Sousa Abessa, María Niebla del Campo, Dayana Moscardi dos Santos, Andressa dos Santos Barbosa Ortega, Juan Carlos Durán-Álvarez, Valdemar I. Esteves, Javier Ferrer, Etelvina Figueira, Mayana Karoline Fontes, Rosa Freitas, Rachel L. Gomes, Victoria Abril Hernández-Morales, Olga Herrera, Jon L. Hobman, Pablo A. Lara-Martín, Hanna Lis, Tamara D. Lunsman, Olfa Mahjoub, Luciane Alves Maranho, Isa Marmelo, António Marques, Carolina Martínez-Avelar, Ana Luísa Maulvault, David B. Mayfield, James P. Meador, Daniel Mejia-Almaguer, Mónica Montory, Ignacio Moreno-Garrido, Aline L.H. Müller, Caio Rodrigues Nobre, Ksenia Pazdro, Camilo Dias Seabra Pereira, Blanca Prado, Osmar D. Prestes, Fabio Hermes Pusceddu, Mario Rodríguez-Varela, Marta Sendra, Lilianna Sharma, Grzegorz Siedlewicz, Jaroslav Slobodnik, Piotr Stepnowski, Beata Szymczycha, Mariana Teles, Nikolaos S. Thomaidis, Tim A. Verslycke, Andrew Yeh, Olivia Zamora, and Renato Zanella
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- 2021
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30. Occurrence and distribution of antibiotics and antibiotic resistance determinants in coastal environments
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Rachel L. Gomes, Jon L. Hobman, and Rosa María Baena-Nogueras
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Pollutant ,Pollution ,Microplastics ,biology ,medicine.drug_class ,media_common.quotation_subject ,Antibiotics ,Antimicrobial ,biology.organism_classification ,Multiple drug resistance ,Antibiotic resistance ,Environmental protection ,medicine ,Environmental science ,Bacteria ,media_common - Abstract
The occurrence of antibiotic compounds in coastal environments is of great concern since most of the pollutant discharges flow into the ocean. The immediate effect of antibiotic release in marine environments is believed to be the selection of resistant bacteria leading to the evolution of antimicrobial resistance (AMR). The explosive mixture of antibiotics and other pollutants working as coselection drivers (e.g., disinfectants, metals, and microplastics) may result in multidrug resistance when a strain acquires resistance to several classes of antibiotics, as well as to other antimicrobials. This issue represents a cross-border threat that requires global solutions. In this chapter, we review the pollution sources as well as the fate and behavior of both antibiotics and AMR in bacteria throughout the transition from terrestrial to marine environment. Lastly, the importance of wastewater treatment and aquaculture activities in antibiotic pollution and development and spread of antibiotic resistances is also highlighted through separate case studies.
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- 2021
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31. It's the product not the polymer: rethinking plastic pollution
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Thomas Stanton, Will Meredith, Mark Patrick Taylor, Paul Kay, Matthew F. Johnson, Rachel L. Gomes, Jason Weeks, Jennifer Hughes, Yuyao Xu, Faith Ka Shun Chan, Harriet G. Orr, Colin E. Snape, and Harvey Wood
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010504 meteorology & atmospheric sciences ,Ecology ,Product design ,Consumerism ,Natural resource economics ,Scale (chemistry) ,0207 environmental engineering ,Ocean Engineering ,Legislation ,02 engineering and technology ,Management, Monitoring, Policy and Law ,Aquatic Science ,Consumption (sociology) ,Oceanography ,01 natural sciences ,Product (business) ,Action (philosophy) ,Business ,020701 environmental engineering ,Plastic pollution ,0105 earth and related environmental sciences ,Water Science and Technology - Abstract
Mismanaged plastic waste poses a complex threat to the environments that it contaminates, generating considerable concern from academia, industry, politicians, and the general public. This concern has driven global action that presents a unique opportunity for widespread environmental engagement beyond the immediate problem of the persistence of plastic in the environment. But for such an opportunity to be realized, it is vital that the realities of plastic waste are not misrepresented or exaggerated. Hotspots of plastic pollution, which are often international in their source, present complex environmental problems in certain parts of the world. Here we argue, however, that the current discourse on plastic waste overshadows greater threats to the environment and society at a global scale. Antiplastic sentiments have been exploited by politicians and industry, where reducing consumers' plastic footprints are often confused by the seldom-challenged veil of environmental consumerism, or “greenwashing.” Plastic is integral to much of modern day life, and regularly represents the greener facilitator of society's consumption. We conclude that it is the product, not the polymer that is driving the issue of plastic waste. Contemporary consumption and disposal practices are the root of much of the anthropogenic waste in the environment, plastic, or not. Effective environmental action to minimize plastic in the environment should be motivated by changes in consumption practices, policies, and product design, and should be informed by objective science and legislation. This article is categorized under:. Science of Water > Hydrological Processes. © 2020 The Authors. WIREs Water published by Wiley Periodicals LLC.
- Published
- 2020
32. Monitoring of Ground Movement and Groundwater Changes in London Using InSAR and GRACE
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Amit Kumar, Vivek Agarwal, Stuart Marsh, and Rachel L. Gomes
- Subjects
010504 meteorology & atmospheric sciences ,Borehole ,Satellite system ,010502 geochemistry & geophysics ,Urban area ,01 natural sciences ,PSInSAR ,lcsh:Technology ,Gravity anomaly ,lcsh:Chemistry ,GRACE ,Interferometric synthetic aperture radar ,groundwater ,London ,Groundwater-related subsidence ,General Materials Science ,Instrumentation ,lcsh:QH301-705.5 ,0105 earth and related environmental sciences ,surface subsidence ,Fluid Flow and Transfer Processes ,Hydrology ,geography ,geography.geographical_feature_category ,lcsh:T ,Process Chemistry and Technology ,General Engineering ,lcsh:QC1-999 ,Computer Science Applications ,lcsh:Biology (General) ,lcsh:QD1-999 ,GNSS applications ,lcsh:TA1-2040 ,lcsh:Engineering (General). Civil engineering (General) ,Geology ,Groundwater ,lcsh:Physics - Abstract
Groundwater-induced land movement can cause damage to property and resources, thus its monitoring is very important for the safety and economics of a city. London is a heavily built-up urban area and relies largely on its groundwater resource and thus poses the threat of land subsidence. Interferometric Synthetic Aperture Radar (InSAR) can facilitate monitoring of land movement and Gravity Recovery and Climate Experiment (GRACE) gravity anomalies can facilitate groundwater monitoring. For London, no previous study has investigated groundwater variations and related land movement using InSAR and GRACE together. In this paper, we used ENVISAT ASAR C-band SAR images to obtain land movement using Persistent Scatterer InSAR (PSInSAR) technique and GRACE gravity anomalies to obtain groundwater variations between December 2002 and December 2010 for central London. Both experiments showed long-term, decreasing, complex, non-linear patterns in the spatial and temporal domain. The land movement values varied from &minus, 6 to +6 mm/year, and their reliability was validated with observed Global Navigation Satellite System (GNSS) data, by conducting a two-sample t-test. The average groundwater loss estimated from GRACE was found to be 9.003 MCM/year. The ground movement was compared to observed groundwater values obtained from various boreholes around central London. It was observed that when large volumes of groundwater is extracted then it leads to land subsidence, and when groundwater is recharged then surface uplift is witnessed. The results demonstrate that InSAR and GRACE complement each other and can be an excellent source of monitoring groundwater for hydrologists.
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- 2020
33. Towards the Continuous Hydrothermal Synthesis of ZnO@Mg2Al-CO3 Core-Shell Composite Nanomaterials
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Jacob Smith, Rachel L. Gomes, Edward Lester, and Ian P. Clark
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layered double hydroxide ,Materials science ,General Chemical Engineering ,Composite number ,Ultraviolet (UV) properties ,chemistry.chemical_element ,02 engineering and technology ,Zinc ,010402 general chemistry ,01 natural sciences ,7. Clean energy ,Hydrothermal circulation ,Nanomaterials ,lcsh:Chemistry ,chemistry.chemical_compound ,Impurity ,Specific surface area ,Hydrothermal synthesis ,General Materials Science ,composite ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,chemistry ,Chemical engineering ,lcsh:QD1-999 ,Hydroxide ,0210 nano-technology ,continuous hydrothermal synthesis ,nano hybrid structures - Abstract
Core-shell Zinc Oxide/Layered Double Hydroxide (ZnO@LDH) composite nanomaterials have been produced by a one-step continuous hydrothermal synthesis process, in an attempt to further enhance the application potential of layered double hydroxide (LDH) nanomaterials. The synthesis involves two hydrothermal reactors in series with the first producing a ZnO core and the second producing the Mg2Al-CO3 shell. Crystal domain length of single phase ZnO and composite ZnO was 25 nm and 42 nm, respectively. The ZnO@LDH composite had a specific surface area of 76 m2 g&minus, 1, which was larger than ZnO or Mg2Al-CO3 when produced separately (53 m2 g&minus, 1 and 58 m2 g&minus, 1, respectively). The increased specific surface area is attributed to the structural arrangement of the Mg2Al-CO3 in the composite. Platelets are envisaged to nucleate on the core and grow outwards, thus reducing the face&ndash, face stacking that occurs in conventional Mg2Al-CO3 synthesis. The Mg/Al ratio in the single phase LDH was close to the theoretical ratio of 2, but the Mg/Al ratio in the composite was 1.27 due to the formation of Zn2Al-CO3 LDH from residual Zn2+ ions. NaOH concentration was also found to influence Mg/Al ratio, with lower NaOH resulting in a lower Mg/Al ratio. NaOH concentration also affected morphology and specific surface area, with reduced NaOH content in the second reaction stage causing a dramatic increase in specific surface area (>, 250 m2 g&minus, 1). The formation of a core-shell composite material was achieved through continuous synthesis, however, the final product was not entirely ZnO@Mg2Al-CO3. The product contained a mixture of ZnO, Mg2Al-CO3, Zn2Al-CO3, and the composite material. Whilst further optimisation is required in order to remove other crystalline impurities from the synthesis, this research acts as a stepping stone towards the formation of composite materials via a one-step continuous synthesis.
- Published
- 2020
34. Top-Down Characterization of an Antimicrobial Sanitizer, Leading From Quenchers of Efficacy to Mode of Action
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Frankie J. Rawson, Simon V. Avery, Franziska Wohlgemuth, Rachel L. Gomes, and Ian Singleton
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Microbiology (medical) ,electrolyzed water ,lcsh:QR1-502 ,yeast ,antimicrobial sanitizer, mode of action, oxidative stress, methionine, fungi, yeast, soil organics, electrolyzed water ,Microbiology ,lcsh:Microbiology ,YEPD ,03 medical and health sciences ,chemistry.chemical_compound ,mode of action ,oxidative stress ,Food science ,Mode of action ,030304 developmental biology ,Original Research ,chemistry.chemical_classification ,methionine ,0303 health sciences ,Methionine ,biology ,030306 microbiology ,Aspergillus niger ,antimicrobial sanitizer ,Antimicrobial ,biology.organism_classification ,soil organics ,Amino acid ,chemistry ,Methionine sulfoxide reductase ,fungi ,Cysteine - Abstract
© Copyright © 2020 Wohlgemuth, Gomes, Singleton, Rawson and Avery. We developed a top-down strategy to characterize an antimicrobial, oxidizing sanitizer, which has diverse proposed applications including surface-sanitization of fresh foods, and with benefits for water resilience. The strategy involved finding quenchers of antimicrobial activity then antimicrobial mode of action, by identifying key chemical reaction partners starting from complex matrices, narrowing down reactivity to specific organic molecules within cells. The sanitizer electrolyzed-water (EW) retained partial fungicidal activity against the food-spoilage fungus Aspergillus niger at high levels of added soils (30–750 mg mL–1), commonly associated with harvested produce. Soil with high organic load (98 mg g–1) gave stronger EW inactivation. Marked inactivation by a complex organics mix (YEPD medium) was linked to its protein-rich components. Addition of pure proteins or amino acids (≤1 mg mL–1) fully suppressed EW activity. Mechanism was interrogated further with the yeast model, corroborating marked suppression of EW action by the amino acid methionine. Pre-culture with methionine increased resistance to EW, sodium hypochlorite, or chlorine-free ozonated water. Overexpression of methionine sulfoxide reductases (which reduce oxidized methionine) protected against EW. Fluoroprobe-based analyses indicated that methionine and cysteine inactivate free chlorine species in EW. Intracellular methionine oxidation can disturb cellular FeS-clusters and we showed that EW treatment impairs FeS-enzyme activity. The study establishes the value of a top-down approach for multi-level characterization of sanitizer efficacy and action. The results reveal proteins and amino acids as key quenchers of EW activity and, among the amino acids, the importance of methionine oxidation and FeS-cluster damage for antimicrobial mode-of-action.
- Published
- 2020
35. Natural fluorapatite dissolution kinetics and Mn2+ and Cr3+ metal removal from sulfate fluids at 35 degrees C
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Rachel L. Gomes, Tharwat Hassan, Charlotte Cowan, Veerle Vandeginste, and Jeremy J. Titman
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Technology ,Environmental Engineering ,Environmental remediation ,Arid ,Health, Toxicology and Mutagenesis ,Batch reactor ,DRINKING-WATER ,0211 other engineering and technologies ,Environmental Sciences & Ecology ,02 engineering and technology ,010501 environmental sciences ,SORPTION ,01 natural sciences ,Apatite ,CALCIUM ,chemistry.chemical_compound ,Engineering ,Acid mine drainage ,AQUEOUS-SOLUTIONS ,Environmental Chemistry ,Sulfate ,APATITE II(TM) ,Waste Management and Disposal ,Dissolution ,0105 earth and related environmental sciences ,LEAD IMMOBILIZATION ,021110 strategic, defence & security studies ,CENTRAL EASTERN DESERT ,Science & Technology ,Fluorapatite ,Engineering, Environmental ,Pollution ,Removal efficiency ,HYDROXYAPATITE ,chemistry ,Heavy metals ,Environmental chemistry ,visual_art ,visual_art.visual_art_medium ,Water treatment ,GROUNDWATER QUALITY ,GOLD DEPOSIT ,Life Sciences & Biomedicine ,Environmental Sciences ,Dissolution and precipitation - Abstract
In light of the consequences of global warming and population growth, access to safe drinking water becomes an ever greater challenge, in particular in low to middle income countries in arid regions. Moreover, mining which may cause acid mine drainage and heavy metal contamination puts further pressure on management of limited water resources. Hence, the development of cost effective water treatment methods is critical. Here, using batch reactor experiments we investigate the kinetics and mechanisms behind divalent Mn and trivalent Cr removal from sulfate fluids using natural fluorapatite at 35 °C. The results show that the fluorapatite dissolution rate depends on fluid pH, and that dissolution is the dominant mechanism in fluids with pH below 4. Apatite can thus serve as remediation to neutralize acidic fluids. Fluid pH of 4-6 triggers a dissolution-precipitation mechanism, in some cases following upon a dissolution-only period, with the formation of a metal phosphate. In these experiments, Cr removal is two to ten times faster than Mn removal given similar solution pH. The results demonstrate that natural apatite represents a promising, cost effective material for use in passive remediation of mining-induced contamination of soils and groundwater in arid regions. ispartof: JOURNAL OF HAZARDOUS MATERIALS vol:389 ispartof: location:Netherlands status: published
- Published
- 2020
36. A techno-economic assessment of the potential for combining supercritical water oxidation with ‘in-situ’ hydrothermal synthesis of nanocatalysts using a counter current mixing reactor
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Yoana García Rodríguez, Thomas Huddle, Edward Lester, Fidel A. Mato, Juan García-Serna, María José Cocero, Rachel L. Gomes, and Ammar Al-Atta
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Supercritical water oxidation ,Chemistry ,Chromium nitrate ,General Chemical Engineering ,Chemical oxygen demand ,02 engineering and technology ,General Chemistry ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,01 natural sciences ,Industrial and Manufacturing Engineering ,Supercritical fluid ,Catalysis ,Reaction rate ,chemistry.chemical_compound ,Chemical engineering ,Environmental Chemistry ,Hydrothermal synthesis ,0210 nano-technology ,0105 earth and related environmental sciences ,Acrylic acid - Abstract
A combined process of supercritical water oxidation (SCWO) and supercritical water hydrothermal synthesis (SCWHS) in a continuous counter current reactor is reported. Acrylic acid was used as a model unsaturated carboxylic acid compound and the effects of the reaction temperature, residence time, oxidant ratio and acrylic acid concentration on chemical oxygen demand (COD) were all investigated. Two different experimental configurations for oxidant delivery were carried out in ‘pre-heated’ and ‘non-preheated’ oxidant configurations. With a stoichiometric excess of 100% oxygen, COD reduction levels of 80% (non-preheated) and 15% (preheated) were achieved with very short residence times. SCWHS was achieved through the addition of small amounts of various soluble metal salts in the cold upflow resulted in nanoparticles forming which increased the reaction rate and hydrothermal oxidation efficiency. The addition of small amounts of chromium nitrate (>5mM) results in nearly 100% COD reduction at 380 °C and residence times of 0.75 s. The potential economic benefits of combining the two processes together, in the different configurations, were also evaluated.
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- 2018
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37. Techno-economic assessment of scale-up of bio-flocculant extraction and production by using okra as biomass feedstock
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Rachel L. Gomes, Eleanor Binner, Chai Siah Lee, Mei Fong Chong, and John P. Robinson
- Subjects
Flocculation ,Scale-up ,General Chemical Engineering ,Extraction (chemistry) ,Economic analysis ,Extraction ,02 engineering and technology ,General Chemistry ,010501 environmental sciences ,Raw material ,021001 nanoscience & nanotechnology ,Pulp and paper industry ,Residence time (fluid dynamics) ,01 natural sciences ,Gross margin ,SuperPro Designer ,Sludge dewatering ,SCALE-UP ,Production (economics) ,Environmental science ,Okra bio-flocculant ,0210 nano-technology ,Tonne ,0105 earth and related environmental sciences - Abstract
This paper reports a techno-economic assessment for industrial scale bio-flocculant production with okra as biomass feedstock. The sludge dewatering ability of the bio-flocculant was evaluated prior to economic analysis. Several optimisation strategies were investigated in order to lower the bio-flocculant production cost. The results showed that continuous mode microwave extraction was more economically beneficial than conventional extraction in batch and continuous modes. Sensitivity analysis revealed that the production cost was significantly affected by annual production and extract yield, and moderately influenced by raw material price. The optimised scheme for bio-flocculant production was continuous mode microwave extraction at 90° C, a residence time of 10 minutes, a water loading of 3.5 w/w and production rate of 220 tonnes per year. The economic assessment showed that the gross margin was positive, return on investment was in the expected range of 20 to 30% and payback time was within 5 years.
- Published
- 2018
- Full Text
- View/download PDF
38. Cloud manufacturing as a sustainable process manufacturing route
- Author
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Rachel L. Gomes, Martin Rigley, Oliver Fisher, Darren Bacon, Nicholas James Watson, and Laura Porcu
- Subjects
0209 industrial biotechnology ,Circular economy ,Computer science ,02 engineering and technology ,Reuse ,Alternative process ,Process manufacturing ,Industrial and Manufacturing Engineering ,020901 industrial engineering & automation ,Resource (project management) ,0502 economics and business ,Cloud manufacturing ,Discrete manufacturing ,business.industry ,05 social sciences ,Waste minimisation ,Resilient manufacturing ,Waste valorization ,Automation ,Manufacturing engineering ,Hardware and Architecture ,Control and Systems Engineering ,business ,050203 business & management ,Software - Abstract
Cloud Manufacturing (CM) is a service oriented business model to share manufacturing capabilities and resources on a cloud platform. Manufacturing is under pressure to achieve cost and environmental impact reductions, as manufacturing becomes more integrated and complex. Cloud manufacturing offers a solution, as it is capable of making intelligent decisions to provide the most sustainable and robust manufacturing route available. Although CM research has progressed, a consensus is still lacking on the concepts within CM as well as applications and scope beyond discrete manufacturing. The aim of this paper is to demonstrate how CM offers a more sustainable manufacturing future to the industry as a whole, before focusing specifically on the application to process manufacturing (e.g. food, pharmaceuticals and chemicals). This paper details the definitions, characteristics, architectures and previous case studies on CM. From this, the fundamental aspects of the CM concept are identified, along with an analysis of how the concept has progressed. A new, comprehensive CM definition is formulated by combining key concepts drawn from previous definitions and emphasizes CM potential for sustainable manufacturing. Four key methods of how CM increases sustainability are identified: (1) collaborative design; (2) greater automation; (3) improved process resilience and (4) enhanced waste reduction, reuse and recovery. The first two key methods are common to both discrete and process manufacturing, however key methods (3) and (4) are more process manufacturing specific and application of CM for these has yet to be fully realised. Examples of how CM’s characteristics may be utilised to solve various process manufacturing problems are presented to demonstrate the applications of CM to process manufacturing. Waste is an important consideration in manufacturing, with strong sustainability implications. The current focus has been on using CM for waste minimisation; however, process manufacturing offers waste as a resource (valorisation opportunities from diversifying co-products, reuse, recycle and energy recovery). Exploring CM’s potential to characterise and evaluate alternative process routes for the valorisation of process manufacturing waste is considered for the first time. The specific limitations preventing CM adoption by process manufacturers are discussed. Finally, CM’s place in the future of manufacturing is explored, including how it will interact with, and complement other emerging manufacturing technologies to deliver a circular economy and personalised products.
- Published
- 2018
- Full Text
- View/download PDF
39. Continuous hydrothermal synthesis of Ca2Al-NO3 layered double hydroxides: The impact of reactor temperature, pressure and NaOH concentration on crystal characteristics
- Author
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Edward Lester, Peter W. Dunne, Ian P. Clark, and Rachel L. Gomes
- Subjects
chemistry.chemical_classification ,Materials science ,Base (chemistry) ,Precipitation (chemistry) ,Nucleation ,Layered double hydroxides ,Mineralogy ,Crystal growth ,02 engineering and technology ,engineering.material ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Biomaterials ,Crystal ,Colloid and Surface Chemistry ,chemistry ,Chemical engineering ,Specific surface area ,engineering ,Hydrothermal synthesis ,0210 nano-technology - Abstract
Continuous hydrothermal synthesis (CHS) of nanoparticles is most commonly associated with the production of metal oxides and ceramics. However, recent work has demonstrated that layered double hydroxides (LDH) can also be synthesised via this method. This research investigates how altering temperature, pressure and precursor base concentration affects growth and nucleation rates which impact on LDH characteristics. Experiments examined the separate effects of increased temperature, pressure and NaOH concentration on crystal domain length (CDL) and surface area. Adjustments to temperature and pressure in the reactor system resulted in variations in CDL. High temperature (200°C) with increasing pressure resulted in an increase in CDL between 50bar and 100bar, then a decrease up to 200bar. Crystal domain length of samples synthesised at 75°C and 150°C showed increases between 50bar and 150bar but a decrease at higher pressure. Variation in CDL showed little impact on specific surface area (4-7m2g-1). Increasing NaOH decreased CDL. High precursor NaOH causes rapid nucleation to occur to the detriment of crystal growth. Samples with 1M and 0.5M NaOH exhibit Ca(OH)2 impurities as the increased NaOH causes precipitation of Ca2+.
- Published
- 2017
- Full Text
- View/download PDF
40. Natural fluorapatite dissolution kinetics and Mn
- Author
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Veerle, Vandeginste, Charlotte, Cowan, Rachel L, Gomes, Tharwat, Hassan, and Jeremy, Titman
- Abstract
In light of the consequences of global warming and population growth, access to safe drinking water becomes an ever greater challenge, in particular in low to middle income countries in arid regions. Moreover, mining which may cause acid mine drainage and heavy metal contamination puts further pressure on management of limited water resources. Hence, the development of cost effective water treatment methods is critical. Here, using batch reactor experiments we investigate the kinetics and mechanisms behind divalent Mn and trivalent Cr removal from sulfate fluids using natural fluorapatite at 35 °C. The results show that the fluorapatite dissolution rate depends on fluid pH, and that dissolution is the dominant mechanism in fluids with pH below 4. Apatite can thus serve as remediation to neutralize acidic fluids. Fluid pH of 4-6 triggers a dissolution-precipitation mechanism, in some cases following upon a dissolution-only period, with the formation of a metal phosphate. In these experiments, Cr removal is two to ten times faster than Mn removal given similar solution pH. The results demonstrate that natural apatite represents a promising, cost effective material for use in passive remediation of mining-induced contamination of soils and groundwater in arid regions.
- Published
- 2019
41. Freshwater microplastic concentrations vary through both space and time
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Matthew F. Johnson, Thomas Stanton, Rachel L. Gomes, C. Paul Nathanail, and William MacNaughtan
- Subjects
Pollution ,Microplastics ,010504 meteorology & atmospheric sciences ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,Fresh Water ,Context (language use) ,General Medicine ,010501 environmental sciences ,Toxicology ,01 natural sciences ,Oceanography ,Environmental science ,Plastic pollution ,Plastics ,Water Pollutants, Chemical ,Volume concentration ,Environmental Monitoring ,0105 earth and related environmental sciences ,media_common - Abstract
Plastic pollution represents one of the most salient indicators of society’s impact on the environment. The microplastic component of this is ubiquitous, however, microplastic studies are seldom representative of the locations they sample. Over 12 months we explored spatiotemporal variation in microplastic prevalence across a freshwater system and in atmospheric deposition within its catchment, in one of the most temporally comprehensive studies of microplastic pollution. Microplastics were quantified in low concentrations (max 0.4 particles L-1) at all freshwater sites, including upstream of urban areas, and on rivers that do not receive wastewater treatment plant effluent. Extrapolated microplastic abundances at each site varied by up to 8 orders of magnitude over the course of the sampling campaign, suggesting that microplastic surveys that do not account for temporal variability misrepresent microplastic prevalence. Whilst we do not wish to underplay the potential impacts of microplastic particles in the environment, we argue that microplastic pollution needs to be placed in a more critical context, including assessment of temporal variability, to appropriately inform legislators and consumers.
- Published
- 2020
- Full Text
- View/download PDF
42. Removal of copper from cattle footbath wastewater with layered double hydroxide adsorbents as a route to antimicrobial resistance mitigation on dairy farms
- Author
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Orla, Williams, Ian, Clark, Rachel L, Gomes, Tania, Perehinec, Jon L, Hobman, Dov J, Stekel, Robert, Hyde, Chris, Dodds, and Edward, Lester
- Subjects
Dairying ,Zinc ,Drug Resistance, Bacterial ,Hydroxides ,Animals ,Cattle ,Adsorption ,Wastewater ,Copper ,Anti-Bacterial Agents - Abstract
Copper and zinc are routinely used in livestock antimicrobial footbaths in commercial farming. The footbath mix is a cost to farmers, and the disposal of spent footbath into slurry tanks leads to soil contamination, as well as the potential for antimicrobial metal resistance and co-selection. This study assesses the potential to mitigate a source of antimicrobial metal resistance in slurry tanks while recovering copper and zinc from spent cattle footbaths. This is the first study in literature to investigate the potential of recovering copper from cattle footbath solutions via any method. The sorbent, Ca
- Published
- 2018
43. Rational Design of Thermostable Carbonic Anhydrase Mutants Using Molecular Dynamics Simulations
- Author
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Anca Pordea, Christof M. Jäger, Rachel L. Gomes, Phei Li Lau, and Ricardo Parra-Cruz
- Subjects
0301 basic medicine ,Protein Conformation ,Molecular Dynamics Simulation ,Protein Engineering ,03 medical and health sciences ,Molecular dynamics ,Protein structure ,Carbonic anhydrase ,Catalytic Domain ,Enzyme Stability ,Materials Chemistry ,Humans ,Physical and Theoretical Chemistry ,Pliability ,Thermostability ,Carbonic Anhydrases ,chemistry.chemical_classification ,Flexibility (engineering) ,biology ,Chemistry ,Rational design ,Temperature ,Protein engineering ,Neisseria gonorrhoeae ,Surfaces, Coatings and Films ,030104 developmental biology ,Enzyme ,Mutation ,biology.protein ,Biophysics - Abstract
The stability of enzymes is critical for their application in industrial processes, which generally require different conditions from the natural enzyme environment. Both rational and random protein engineering approaches have been used to increase stability, with the latter requiring extensive experimental effort for the screening of variants. Moreover, some general rules addressing the molecular origin of protein thermostability have been established. Herein, we demonstrate the use of molecular dynamics simulations to gain molecular level understanding of protein thermostability and to engineer stabilizing mutations. Carbonic anhydrase (CA) is an enzyme with a high potential for biotechnological carbon capture applications, provided it can be engineered to withstand the high temperature process environments, inevitable in most gas treatment units. In this study, we used molecular dynamics simulations at 343, 353, and 363 K to study the relationship between structure flexibility and thermostability in bacterial α-CAs and applied this knowledge to the design of mutants with increased stability. The most thermostable α-CA known, TaCA from Thermovibrio ammonificans, had the most rigid structure during molecular dynamics simulations, but also showed regions with high flexibility. The most flexible amino acids in these regions were identified from root mean square fluctuation (RMSF) studies, and stabilizing point mutations were predicted based on their capacity to improve the calculated free energy of unfolding. Disulfide bonds were also designed at sites with suitable geometries and selected based on their location at flexible sites, assessed by B-factor calculation. Molecular dynamics simulations allowed the identification of five mutants with lower RMSF of the overall structure at 400 K, compared to wild-type TaCA. Comparison of free-energy landscapes between wild-type TaCA and the most promising mutants, Pro165Cys-Gln170Cys and Asn140Gly, showed an increased conformational stability of the mutants at 400 K.
- Published
- 2018
44. Anthropogenic environmental drivers of antimicrobial resistance in wildlife
- Author
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Benjamin M C, Swift, Malcolm, Bennett, Katie, Waller, Christine, Dodd, Annie, Murray, Rachel L, Gomes, Bethan, Humphreys, Jon L, Hobman, Michael A, Jones, Sophia E, Whitlock, Lucy J, Mitchell, Rosie J, Lennon, and Kathryn E, Arnold
- Subjects
Birds ,England ,Drug Resistance, Multiple, Bacterial ,Drug Resistance, Bacterial ,Mutation ,Escherichia coli ,Animals ,Animals, Wild ,Rodentia ,Amino Acid Sequence ,Environment ,Anti-Bacterial Agents - Abstract
The isolation of antimicrobial resistant bacteria (ARB) from wildlife living adjacent to humans has led to the suggestion that such antimicrobial resistance (AMR) is anthropogenically driven by exposure to antimicrobials and ARB. However, ARB have also been detected in wildlife living in areas without interaction with humans. Here, we investigated patterns of resistance in Escherichia coli isolated from 408 wild bird and mammal faecal samples. AMR and multi-drug resistance (MDR) prevalence in wildlife samples differed significantly between a Sewage Treatment Plant (STP; wastes of antibiotic-treated humans) and a Farm site (antibiotic-treated livestock wastes) and Central site (no sources of wastes containing anthropogenic AMR or antimicrobials), but patterns of resistance also varied significantly over time and between mammals and birds. Over 30% of AMR isolates were resistant to colistin, a last-resort antibiotic, but resistance was not due to the mcr-1 gene. ESBL and AmpC activity were common in isolates from mammals. Wildlife were, therefore, harbouring resistance of clinical relevance. AMR E. coli, including MDR, were found in diverse wildlife species, and the patterns and prevalence of resistance were not consistently associated with site and therefore different exposure risks. We conclude that AMR in commensal bacteria of wildlife is not driven simply by anthropogenic factors, and, in practical terms, this may limit the utility of wildlife as sentinels of spatial variation in the transmission of environmental AMR.
- Published
- 2018
45. Role of H2O2 in the fluctuating patterns of COD (chemical oxygen demand) during the treatment of palm oil mill effluent (POME) using pilot scale triple frequency ultrasound cavitation reactor
- Author
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Ibrahim Alzorqi, Asgar Ali, Sivakumar Manickam, Norhaida binti Zainal Abidin, Shridharan Parthasarathy, Timm Joyce Tiong, Rachel L. Gomes, and Ern Huay Ng
- Subjects
Biochemical oxygen demand ,Acoustics and Ultrasonics ,Industrial Waste ,Pilot Projects ,Palm Oil ,Inorganic Chemistry ,Sonication ,chemistry.chemical_compound ,Pome ,Plant Oils ,Chemical Engineering (miscellaneous) ,Environmental Chemistry ,Radiology, Nuclear Medicine and imaging ,Hydrogen peroxide ,Biological Oxygen Demand Analysis ,business.industry ,Organic Chemistry ,Ultrasound ,Chemical oxygen demand ,Hydrogen Peroxide ,Hydrogen-Ion Concentration ,Pulp and paper industry ,chemistry ,Wastewater ,Cavitation ,Ultrasonic sensor ,business - Abstract
Palm oil mill effluent (POME) is a highly contaminating wastewater due to its high chemical oxygen demand (COD) and biochemical oxygen demand (BOD). Conventional treatment methods require longer residence time (10–15 days) and higher operating cost. Owing to this, finding a suitable and efficient method for the treatment of POME is crucial. In this investigation, ultrasound cavitation technology has been used as an alternative technique to treat POME. Cavitation is the phenomenon of formation, growth and collapse of bubbles in a liquid. The end process of collapse leads to intense conditions of temperature and pressure and shock waves which assist various physical and chemical transformations. Two different ultrasound systems i.e. ultrasonic bath (37 kHz) and a hexagonal triple frequency ultrasonic reactor (28, 40 and 70 kHz) of 15 L have been used. The results showed a fluctuating COD pattern (in between 45,000 and 60,000 mg/L) while using ultrasound bath alone, whereas a non-fluctuating COD pattern with a final COD of 27,000 mg/L was achieved when hydrogen peroxide was introduced. Similarly for the triple frequency ultrasound reactor, coupling all the three frequencies resulted into a final COD of 41,300 mg/L compared to any other individual or combination of two frequencies. With the possibility of larger and continuous ultrasonic cavitational reactors, it is believed that this could be a promising and a fruitful green process engineering technique for the treatment of POME.
- Published
- 2014
- Full Text
- View/download PDF
46. Continuous Synthesis of Zn2Al-CO3 Layered Double Hydroxides for the Adsorption of Reactive Dyes from Water
- Author
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Edward Lester, Rachel L. Gomes, Ian P. Clark, and Jacob Smith
- Subjects
Continuous Flow Synthesis ,Intercalation (chemistry) ,02 engineering and technology ,010501 environmental sciences ,engineering.material ,Adsorption Kinetics ,01 natural sciences ,law.invention ,symbols.namesake ,Adsorption ,law ,Specific surface area ,Chemical Engineering (miscellaneous) ,Molecule ,Calcination ,Waste Management and Disposal ,Layered Double Hydroxides ,0105 earth and related environmental sciences ,Chemistry ,Process Chemistry and Technology ,Layered double hydroxides ,Langmuir adsorption model ,021001 nanoscience & nanotechnology ,Pollution ,Amorphous solid ,Chemical engineering ,Reactive Dyes ,symbols ,engineering ,Thermodynamics ,0210 nano-technology - Abstract
A novel pilot scale approach to continuous synthesis of layered double hydroxides (LDHs) was used to produce Zn2Al-CO3. The Zn2Al-CO3 was calcined and used in the adsorption of Reactive Black 5 (RB5) and Reactive Orange 16 (RO16) from water. The specific surface area of the LDH was 50.1 m2 g-1, while the surface area of the calcined LDH (MMO) was 57.8 m2 g-1. X-ray diffraction indicated complete breakdown of the LDH at 500 °C for 4 hours, with amorphous Al2O3 or AlOOH alongside ZnO. Reaction variables in the adsorption system; temperature, adsorbent dose, pH, initial concentration and the effect of competing anions were investigated across four temperatures from 10 °C to 40 °C. Maximum adsorption capacity calculated from the Langmuir isotherm was 895 mg g-1 and 589 mg g-1 at 20 °C, for RB5 and RO16, respectively. Intercalation of dye molecules was the main mode of adsorption, as indicated by shifts in (003) reflection from 11.5° to 4.5° and 3.2° for RB5 and RO16 respectively. Adsorption was best modelled by the pseudo 2nd order kinetic model. The intra-particle diffusion model indicated multiple stages of adsorption; surface adsorption occurs initially, followed by, intra-particle diffusion of dye molecules into the interlayer region. Regeneration through calcination resulted in an adsorption equal to 99 ± 2%.
- Published
- 2019
- Full Text
- View/download PDF
47. Continuous hydrothermal synthesis of Ca
- Author
-
Ian, Clark, Peter W, Dunne, Rachel L, Gomes, and Edward, Lester
- Abstract
Continuous hydrothermal synthesis (CHS) of nanoparticles is most commonly associated with the production of metal oxides and ceramics. However, recent work has demonstrated that layered double hydroxides (LDH) can also be synthesised via this method. This research investigates how altering temperature, pressure and precursor base concentration affects growth and nucleation rates which impact on LDH characteristics. Experiments examined the separate effects of increased temperature, pressure and NaOH concentration on crystal domain length (CDL) and surface area. Adjustments to temperature and pressure in the reactor system resulted in variations in CDL. High temperature (200°C) with increasing pressure resulted in an increase in CDL between 50bar and 100bar, then a decrease up to 200bar. Crystal domain length of samples synthesised at 75°C and 150°C showed increases between 50bar and 150bar but a decrease at higher pressure. Variation in CDL showed little impact on specific surface area (4-7m
- Published
- 2017
48. Enhancing natural product extraction and mass transfer using selective microwave heating
- Author
-
Chai Siah Lee, Charles Winkworth-Smith, Rachel L. Gomes, Rebecca John, Eleanor Binner, and John P. Robinson
- Subjects
General Chemical Engineering ,Analytical chemistry ,Extraction ,02 engineering and technology ,Microwave assisted ,Industrial and Manufacturing Engineering ,Osmotic pressure ,0404 agricultural biotechnology ,Mass transfer ,Selective heating ,Chemistry ,Applied Mathematics ,04 agricultural and veterinary sciences ,General Chemistry ,Internal cell ,021001 nanoscience & nanotechnology ,040401 food science ,Temperature gradient ,Chemical physics ,Microwave heating ,Leaching (metallurgy) ,0210 nano-technology ,Microwave ,Chemical potential - Abstract
This study uses a combination of empirical observations and an analysis of mass transfer behaviour to yield new insights into the mechanism of microwave assisted extraction. Enhancements in extraction rate and yield were observed experimentally compared with conventional extraction at temperatures in excess of 50°C, however at lower temperatures there was no observable difference between the two processes. A step-change in extract yield between microwave and conventional processes was shown to be caused by selective heating. A temperature gradient of the order of 1oC is sufficient to reduce the water chemical potential within the cell structure, which changes the osmotic potential such that internal cell pressures can increase to the point where disruption occurs. This paper demonstrates the need to operate microwave extraction processes at a temperature that enables selective heating, and a newly-proposed mass transfer phenomenon that could have wider positive implications for extraction and leaching processes.
- Published
- 2016
49. Analysis of conjugated steroid androgens: Deconjugation, derivatisation and associated issues
- Author
-
Colin E. Snape, Mark A. Sephton, Rachel L. Gomes, and Will Meredith
- Subjects
Male ,TMCS, trimethylchlorosilane ,LC/MS, liquid chromatography/mass spectrometry ,Forensic drug testing ,medicine.medical_treatment ,Clinical Biochemistry ,FU, Fishman unit ,Pharmaceutical Science ,P-Pi, pyrophosphate ,WADA, World Anti-Doping Agency ,Review ,01 natural sciences ,Mass Spectrometry ,Analytical Chemistry ,Biological samples ,chemistry.chemical_compound ,Sulfation ,Liquid chromatography–mass spectrometry ,RU, Roy unit ,Drug Discovery ,IS, internal standard ,UDPGA, uridine diphosphoglucuronic acid ,Chromatography, High Pressure Liquid ,Spectroscopy ,Doping in Sports ,0303 health sciences ,Molecular Structure ,Sulfates ,BSTFA, N,O-bis(trimethylsilyl)-trifluoroacetamide ,FID, flame ionisation detector ,GC/MS, gas chromatography/mass spectrometry ,T/E ratio, testosterone to epitestosterone ratio ,Substance Abuse Detection ,G, glucuronide ,SPE, solid phase extraction ,L–L, liquid–liquid ,PAPS, 3′,5′-phosphoadenosine ,Androgens ,Steroids ,13C/12C, stable carbon isotope ratio ,Glucuronide ,ATP, adenosine triphosphate ,Conjugated steroids ,Deconjugation ,TMIS, trimethyliodosilane ,MSTFA, N-methyl-N-(trimethylsilyl)-trifluoroacetamide ,Gas Chromatography-Mass Spectrometry ,Steroid ,03 medical and health sciences ,Glucuronides ,IU, international unit ,medicine ,Humans ,Derivatization ,030304 developmental biology ,Chromatography ,APS, adenosine-5′-phosphate ,010401 analytical chemistry ,BSTFA ,ES, external standard ,0104 chemical sciences ,GC/C/IRMS, gas chromatography/combustion/isotopic ratio mass spectrometry ,S, sulfate ,chemistry ,U, unit ,DHEA, dehydroepiandrosterone ,Gas chromatography ,Gas chromatography–mass spectrometry ,Derivatisation ,TMS, trimethylsilyating - Abstract
Gas chromatography/mass spectrometry (GC/MS) is the preferred technique for the detection of urinary steroid androgens for drug testing in athletics. Excreted in either the glucuronide or sulfated conjugated form, steroids must first undergo deconjugation followed by derivatisation to render them suitable for GC analysis. Discussed herein are the deconjugation and the derivatisation preparative options. The analytical challenges surrounding these preparatory approaches, in particular the inability to cleave the sulfate moiety have led to a focus on testing protocols that reply on glucuronide conjugates. Other approaches which alleviate the need for deconjugation and derivatisation are also highlighted.
- Published
- 2009
- Full Text
- View/download PDF
50. Fate of Conjugated Natural and Synthetic Steroid Estrogens in Crude Sewage and Activated Sludge Batch Studies
- Author
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Mark D. Scrimshaw, Rachel L. Gomes, and John N. Lester
- Subjects
Time Factors ,medicine.medical_treatment ,Sewage ,Ethinyl Estradiol ,Water Purification ,Steroid ,Sulfation ,Estradiol Congeners ,medicine ,Environmental Chemistry ,Effluent ,Conjugate ,Chromatography ,Sulfates ,business.industry ,Chemistry ,Fate ,Temperature ,Estrogens ,General Chemistry ,Kinetics ,Activated sludge ,Sewage treatment ,business ,Glucuronide ,Sludge - Abstract
This document is the unedited author's version of a Submitted Work that was subsequently accepted for publication in Environmental Science & Technology, copyright © American Chemical Society after peer review. To access the final edited and published work see http://pubs.acs.org/doi/abs/10.1021/es801952h. Steroids are excreted from the human body in the conjugated form but are present in sewage influent and effluent as the free steroid, the major source of estrogenic activity observed in water courses. The fate of sulfate and glucuronide conjugated steroid estrogens was investigated in batch studies using activated sludge grown on synthetic sewage in a laboratory-scale Husmann simulation and crude sewage from the field. A clear distinction between the fate of sulfate and glucuronide conjugates was observed in both matrices, with sulfated conjugates proving more recalcitrant and glucuronide deconjugation preferential in crude sewage. For each conjugate, the free steroid was observed in the biotic samples. The degree of free steroid formation was dependent on the conjugate moiety, favoring the glucuronide. Subsequent degradation of the free steroid (and sorption to the activated sludge solid phase) was evaluated. Deconjugation followed the first order reaction rate with rate constants for 17α-ethinylestradiol 3-glucuronide, estriol 16α-glucuronide, and estrone 3-glucuronide determined as 0.32, 0.24, and 0.35 h respectively. The activated sludge solid retention time over the range of 3−9 days had 74 to 94% of sulfate conjugates remaining after 8 h. In contrast, a correlation between increasing temperature and decreasing 17α-ethinylestradiol 3-glucuronide concentrations in the activated sludge observed no conjugate present in the AS following 8 h at 22 °C Based on these batch studies and literature excretion profiles, a hypothesis is presented on which steroids and what form (glucuronide, sulfate, or free) will likely enter the sewage treatment plant. EPSRC
- Published
- 2009
- Full Text
- View/download PDF
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