3 results on '"Rachel K. Reed"'
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2. Cooperation between somatic mutation and germline-encoded residues enables antibody recognition of HIV-1 envelope glycans.
- Author
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Nelson R Wu, Nathan I Nicely, Esther M Lee, Rachel K Reed, Brian E Watts, Fangping Cai, William E Walkowicz, Baptiste Aussedat, Julia A Jones, Amanda Eaton, Ashley M Trama, S Munir Alam, David C Montefiori, Barton F Haynes, and Kevin O Saunders
- Subjects
Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Viral glycoproteins are a primary target for host antibody responses. However, glycans on viral glycoproteins can hinder antibody recognition since they are self glycans derived from the host biosynthesis pathway. During natural HIV-1 infection, neutralizing antibodies are made against glycans on HIV-1 envelope glycoprotein (Env). However, such antibodies are rarely elicited with vaccination. Previously, the vaccine-induced, macaque antibody DH501 was isolated and shown to bind to high mannose glycans on HIV-1 Env. Understanding how DH501 underwent affinity maturation to recognize glycans could inform vaccine induction of HIV-1 glycan antibodies. Here, we show that DH501 Env glycan reactivity is mediated by both germline-encoded residues that contact glycans, and somatic mutations that increase antibody paratope flexibility. Only somatic mutations in the heavy chain were required for glycan reactivity. The paratope conformation was fragile as single mutations within the immunoglobulin fold or complementarity determining regions were sufficient for eliminating antibody function. Taken together, the initial germline VHDJH rearrangement generated contact residues capable of binding glycans, and somatic mutations were required to form a flexible paratope with a cavity conducive to HIV-1 envelope glycan binding. The requirement for the presence of most somatic mutations across the heavy chain variable region provides one explanation for the difficulty in inducing anti-Env glycan antibodies with HIV-1 Env vaccination.
- Published
- 2019
- Full Text
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3. Cooperation between somatic mutation and germline-encoded residues enables antibody recognition of HIV-1 envelope glycans
- Author
-
Fangping Cai, Julia A. Jones, S. Munir Alam, Barton F. Haynes, Amanda Eaton, Nathan I. Nicely, Rachel K. Reed, William E. Walkowicz, Baptiste Aussedat, Esther Lee, David C. Montefiori, Brian E. Watts, Nelson R. Wu, Ashley M. Trama, and Kevin O. Saunders
- Subjects
RNA viruses ,Physiology ,HIV Infections ,Complementarity determining region ,Monkeys ,HIV Antibodies ,medicine.disease_cause ,Pathology and Laboratory Medicine ,Biochemistry ,Immunodeficiency Viruses ,Immune Physiology ,Medicine and Health Sciences ,Biology (General) ,Amino Acids ,chemistry.chemical_classification ,Mammals ,AIDS Vaccines ,0303 health sciences ,Mutation ,Immune System Proteins ,Crystallography ,Organic Compounds ,Physics ,030302 biochemistry & molecular biology ,Chemical Reactions ,env Gene Products, Human Immunodeficiency Virus ,Eukaryota ,Recombination Reactions ,Condensed Matter Physics ,3. Good health ,Cell biology ,Chemistry ,Medical Microbiology ,Viral Pathogens ,Viruses ,Physical Sciences ,Vertebrates ,Crystal Structure ,Antibody ,Pathogens ,Macaque ,Research Article ,Primates ,Glycan ,Proline ,QH301-705.5 ,Immunology ,Carbohydrates ,Biology ,Microbiology ,Antibodies ,Affinity maturation ,03 medical and health sciences ,Germline mutation ,Polysaccharides ,Virology ,Retroviruses ,Old World monkeys ,medicine ,Genetics ,Solid State Physics ,Animals ,Humans ,Molecular Biology ,Microbial Pathogens ,030304 developmental biology ,Base Sequence ,Lentivirus ,Organic Chemistry ,Organisms ,Chemical Compounds ,Biology and Life Sciences ,Proteins ,HIV ,Cyclic Amino Acids ,RC581-607 ,Antibodies, Neutralizing ,carbohydrates (lipids) ,chemistry ,Amniotes ,biology.protein ,HIV-1 ,Somatic Mutation ,Parasitology ,Paratope ,Immunologic diseases. Allergy ,Glycoprotein ,Mannose - Abstract
Viral glycoproteins are a primary target for host antibody responses. However, glycans on viral glycoproteins can hinder antibody recognition since they are self glycans derived from the host biosynthesis pathway. During natural HIV-1 infection, neutralizing antibodies are made against glycans on HIV-1 envelope glycoprotein (Env). However, such antibodies are rarely elicited with vaccination. Previously, the vaccine-induced, macaque antibody DH501 was isolated and shown to bind to high mannose glycans on HIV-1 Env. Understanding how DH501 underwent affinity maturation to recognize glycans could inform vaccine induction of HIV-1 glycan antibodies. Here, we show that DH501 Env glycan reactivity is mediated by both germline-encoded residues that contact glycans, and somatic mutations that increase antibody paratope flexibility. Only somatic mutations in the heavy chain were required for glycan reactivity. The paratope conformation was fragile as single mutations within the immunoglobulin fold or complementarity determining regions were sufficient for eliminating antibody function. Taken together, the initial germline VHDJH rearrangement generated contact residues capable of binding glycans, and somatic mutations were required to form a flexible paratope with a cavity conducive to HIV-1 envelope glycan binding. The requirement for the presence of most somatic mutations across the heavy chain variable region provides one explanation for the difficulty in inducing anti-Env glycan antibodies with HIV-1 Env vaccination., Author summary The viral pathogen HIV-1 uses sugar molecules, called glycans, from the host to densely cover its envelope protein. Most broadly neutralizing HIV-1 antibodies interact with glycans on the HIV-1 envelope protein. For this reason, the vaccine induction of anti-HIV-1 glycan antibodies is a principal goal. Since vaccine-induced anti-HIV-1 glycan antibodies are rare, it has not been determined how antibodies develop during vaccination to recognize HIV-1 glycans. Here, we elucidated the amino acids required for a primate antibody induced by HIV-1 vaccination to interact with HIV envelope glycans. Genetic and functional analyses showed the putative antibody germline nucleotide sequence encoded amino acids that were required for glycan reactivity. Somatic mutation also introduced critical amino acids that were required for glycan recognition. Unusually, the somatic mutations were not required in order to form direct contacts with antigen, but instead functioned to improve antibody flexibility and to form its glycan binding site. These results define the molecular development of a vaccine-induced HIV-1 glycan antibody, providing insight into why vaccines rarely elicit antibodies against the glycans on the HIV-1 outer coat protein.
- Published
- 2019
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