815 results on '"Rabkin, Charles S"'
Search Results
2. Autoimmune conditions and gastric cancer risk in a population-based study in the United Kingdom
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Murphy, John D., Gadalla, Shahinaz M., Anderson, Lesley A., Rabkin, Charles S., Cardwell, Chris R., Song, Minkyo, and Camargo, M. Constanza
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- 2024
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3. Hospital Readmissions Among Persons With Human Immunodeficiency Virus in the United States and Canada, 2005–2018: A Collaboration of Cohort Studies
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Davy-Mendez, Thibaut, Napravnik, Sonia, Hogan, Brenna C, Eron, Joseph J, Gebo, Kelly A, Althoff, Keri N, Moore, Richard D, Silverberg, Michael J, Horberg, Michael A, Gill, M John, Rebeiro, Peter F, Karris, Maile Y, Klein, Marina B, Kitahata, Mari M, Crane, Heidi M, Nijhawan, Ank, McGinnis, Kathleen A, Thorne, Jennifer E, Lima, Viviane D, Bosch, Ronald J, Colasanti, Jonathan A, Rabkin, Charles S, Lang, Raynell, Berry, Stephen A, Benson, Constance A, Kirk, Gregory D, Greenberg, Alan E, Castel, Amanda D, Monroe, Anne K, Marconi, Vincent, Colasanti, Jonathan, Mayer, Kenneth H, Grasso, Chris, Hogg, Robert S, Montaner, Julio SG, Salters, Kate, Buchacz, Kate, Li, Jun, Jacobson, Jeffrey, Brown, Todd, Tien, Phyllis, D'Souza, Gypsyamber, Smith, Graham, Loutfy, Mona, Gupta, Meenakshi, Rabkin, Charles, Kroch, Abigail, Burchell, Ann, Betts, Adrian, Lindsay, Joanne, Mayor, Angel M, Martin, Jeffrey N, Deeks, Steven G, Brooks, John T, Saag, Michael S, Mugavero, Michael J, Burkholder, Greer, Bamford, Laura, Karris, Maile, Sterling, Timothy R, Haas, David, Rebeiro, Peter, Turner, Megan, McGinnis, Kathleen, Justice, Amy, Gange, Stephen J, Lee, Jennifer S, Hogan, Brenna, Humes, Elizabeth, Coburn, Sally, Gerace, Lucas, and Stewart, Cameron
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Biomedical and Clinical Sciences ,Clinical Sciences ,Infectious Diseases ,Good Health and Well Being ,Adult ,Male ,Humans ,United States ,Patient Readmission ,HIV ,HIV Infections ,Cohort Studies ,Canada ,aging ,healthcare utilization ,hospitalization ,readmission ,North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD) of the International epidemiology Databases to Evaluate AIDS ,Biological Sciences ,Medical and Health Sciences ,Microbiology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundHospital readmission trends for persons with human immunodeficiency virus (PWH) in North America in the context of policy changes, improved antiretroviral therapy (ART), and aging are not well-known. We examined readmissions during 2005-2018 among adult PWH in NA-ACCORD.MethodsLinear risk regression estimated calendar trends in 30-day readmissions, adjusted for demographics, CD4 count, AIDS history, virologic suppression (
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- 2023
4. Dietary intake of vitamin C and gastric cancer: a pooled analysis within the Stomach cancer Pooling (StoP) Project
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Sassano, Michele, Seyyedsalehi, Monireh Sadat, Collatuzzo, Giulia, Pelucchi, Claudio, Bonzi, Rossella, Ferraroni, Monica, Palli, Domenico, Yu, Guo-Pei, Zhang, Zuo-Feng, López-Carrillo, Lizbeth, Lunet, Nuno, Morais, Samantha, Zaridze, David, Maximovich, Dmitry, Martín, Vicente, Castano-Vinyals, Gemma, Vioque, Jesús, González-Palacios, Sandra, Ward, Mary H., Malekzadeh, Reza, Pakseresht, Mohammadreza, Hernández-Ramirez, Raul Ulises, López-Cervantes, Malaquias, Negri, Eva, Turati, Federica, Rabkin, Charles S., Tsugane, Shoichiro, Hidaka, Akihisa, Lagiou, Areti, Lagiou, Pagona, Camargo, M. Constanza, Curado, Maria Paula, Boccia, Stefania, La Vecchia, Carlo, and Boffetta, Paolo
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- 2024
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5. Reproductive factors, hormonal interventions, and gastric cancer risk in the Stomach cancer Pooling (StoP) Project
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Song, Minkyo, Jayasekara, Harindra, Pelucchi, Claudio, Rabkin, Charles S., Johnson, Kenneth C., Hu, Jinfu, Palli, Domenico, Ferraroni, Monica, Liao, Linda M., Bonzi, Rossella, Zaridze, David, Maximovitch, Dmitry, Aragonés, Nuria, Martin, Vicente, Castaño-Vinyals, Gemma, Guevara, Marcela, Tsugane, Shoichiro, Hamada, Gerson Shigueaki, Hidaka, Akihisa, Negri, Eva, Ward, Mary H., Sinha, Rashmi, Lagiou, Areti, Lagiou, Pagona, Boffetta, Paolo, Curado, Maria Paula, Lunet, Nuno, Vioque, Jesus, Zhang, Zuo-Feng, La Vecchia, Carlo, and Camargo, M. Constanza
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- 2024
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6. Yoghurt Intake and Gastric Cancer: A Pooled Analysis of 16 Studies of the StoP Consortium
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Collatuzzo, Giulia, Negri, Eva, Pelucchi, Claudio, Bonzi, Rossella, Turati, Federica, Rabkin, Charles S, Liao, Linda M, Sinha, Rashmi, Palli, Domenico, Ferraroni, Monica, López-Carrillo, Lizbeth, Lunet, Nuno, Morais, Samantha, Albanes, Demetrius, Weinstein, Stephanie J, Parisi, Dominick, Zaridze, David, Maximovitch, Dmitry, Dierssen-Sotos, Trinidad, Jiménez-Moleón, José Juan, Vioque, Jesus, de la Hera, Manoli Garcia, Curado, Maria Paula, Dias-Neto, Emmanuel, Hernández-Ramírez, Raúl Ulises, López-Cervantes, Malaquias, Ward, Mary H, Tsugane, Shoichiro, Hidaka, Akihisa, Lagiou, Areti, Lagiou, Pagona, Zhang, Zuo-Feng, Trichopoulou, Antonia, Karakatsani, Anna, Camargo, Maria Constanza, La Vecchia, Carlo, and Boffetta, Paolo
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Epidemiology ,Biomedical and Clinical Sciences ,Health Sciences ,Cancer ,Digestive Diseases ,Oral and gastrointestinal ,Male ,Humans ,Female ,Stomach Neoplasms ,Case-Control Studies ,Logistic Models ,Adenocarcinoma ,Helicobacter Infections ,Risk Factors ,gastric cancer ,diet ,nutrition ,yoghurt ,Food Sciences ,Nutrition and Dietetics ,Clinical sciences ,Nutrition and dietetics ,Public health - Abstract
BackgroundYoghurt can modify gastrointestinal disease risk, possibly acting on gut microbiota. Our study aimed at exploring the under-investigated association between yoghurt and gastric cancer (GC).MethodsWe pooled data from 16 studies from the Stomach Cancer Pooling (StoP) Project. Total yoghurt intake was derived from food frequency questionnaires. We calculated study-specific odds ratios (ORs) of GC and the corresponding 95% confidence intervals (CIs) for increasing categories of yoghurt consumption using univariate and multivariable unconditional logistic regression models. A two-stage analysis, with a meta-analysis of the pooled adjusted data, was conducted.ResultsThe analysis included 6278 GC cases and 14,181 controls, including 1179 cardia and 3463 non-cardia, 1191 diffuse and 1717 intestinal cases. The overall meta-analysis revealed no association between increasing portions of yoghurt intake (continuous) and GC (OR = 0.98, 95% CI = 0.94-1.02). When restricting to cohort studies, a borderline inverse relationship was found (OR = 0.93, 95% CI = 0.88-0.99). The adjusted and unadjusted OR were 0.92 (95% CI = 0.85-0.99) and 0.78 (95% CI = 0.73-0.84) for any vs. no yoghurt consumption and GC risk. The OR for 1 category of increase in yoghurt intake was 0.96 (95% CI = 0.91-1.02) for cardia, 1.03 (95% CI = 1.00-1.07) for non-cardia, 1.12 (95% CI = 1.07-1.19) for diffuse and 1.02 (95% CI = 0.97-1.06) for intestinal GC. No effect was seen within hospital-based and population-based studies, nor in men or women.ConclusionsWe found no association between yoghurt and GC in the main adjusted models, despite sensitivity analyses suggesting a protective effect. Additional studies should further address this association.
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- 2023
7. Tea consumption and gastric cancer: a pooled analysis from the Stomach cancer Pooling (StoP) Project consortium
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Martimianaki, Georgia, Alicandro, Gianfranco, Pelucchi, Claudio, Bonzi, Rossella, Rota, Matteo, Hu, Jinfu, Johnson, Kenneth C, Rabkin, Charles S, Liao, Linda M, Sinha, Rashmi, Zhang, Zuo-Feng, Dalmartello, Michela, Lunet, Nuno, Morais, Samantha, Palli, Domenico, Ferraroni, Monica, Yu, Guo-Pei, Tsugane, Shoichiro, Hidaka, Akihisa, Curado, Maria Paula, Dias-Neto, Emmanuel, Zaridze, David, Maximovitch, Dmitry, Vioque, Jesus, Garcia de la Hera, Manoli, López-Carrillo, Lizbeth, Hernández-Ramírez, Raúl Ulises, Hamada, Gerson Shigueaki, Ward, Mary H, Mu, Lina, Malekzadeh, Reza, Pourfarzi, Farhad, Trichopoulou, Antonia, Karakatsani, Anna, Kurtz, Robert C, Lagiou, Areti, Lagiou, Pagona, Boccia, Stefania, Boffetta, Paolo, Camargo, M Constanza, Negri, Eva, and La Vecchia, Carlo
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Digestive Diseases ,Clinical Research ,Cancer ,Case-Control Studies ,Helicobacter Infections ,Humans ,Odds Ratio ,Risk Factors ,Stomach Neoplasms ,Tea ,Public Health and Health Services ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
BackgroundEvidence from epidemiological studies on the role of tea drinking in gastric cancer risk remains inconsistent. We aimed to investigate and quantify the relationship between tea consumption and gastric cancer in the Stomach cancer Pooling (StoP) Project consortium.MethodsA total of 9438 cases and 20,451 controls from 22 studies worldwide were included. Odds ratios (ORs) and the corresponding 95% confidence intervals (CIs) of gastric cancer for regular versus non-regular tea drinkers were estimated by one and two-stage modelling analyses, including terms for sex, age and the main recognised risk factors for gastric cancer.ResultsCompared to non-regular drinkers, the estimated adjusted pooled OR for regular tea drinkers was 0.91 (95% CI: 0.85-0.97). When the amount of tea consumed was considered, the OR for consumption of 1-2 cups/day was 1.01 (95% CI: 0.94-1.09) and for >3 cups/day was 0.91 (95% CI: 0.80-1.03). Stronger inverse associations emerged among regular drinkers in China and Japan (OR: 0.67, 95% CI: 0.49-0.91) where green tea is consumed, in subjects with H. pylori infection (OR: 0.68, 95% CI: 0.58-0.80), and for gastric cardia cancer (OR: 0.64, 95% CI: 0.49-0.84).ConclusionOur results indicate a weak inverse association between tea consumption and gastric cancer.
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- 2022
8. The mediating role of combined lifestyle factors on the relationship between education and gastric cancer in the Stomach cancer Pooling (StoP) Project
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Alicandro, Gianfranco, Bertuccio, Paola, Collatuzzo, Giulia, Pelucchi, Claudio, Bonzi, Rossella, Liao, Linda M, Rabkin, Charles S, Sinha, Rashmi, Negri, Eva, Dalmartello, Michela, Zaridze, David, Maximovich, Dmitry, Vioque, Jesus, Garcia de la Hera, Manoli, Tsugane, Shoichiro, Hidaka, Akihisa, Hamada, Gerson Shigueaki, López-Carrillo, Lizbeth, Hernández-Ramírez, Raúl Ulises, Malekzadeh, Reza, Pourfarzi, Farhad, Zhang, Zuo-Feng, Kurtz, Robert C, Camargo, M Constanza, Curado, Maria Paula, Lunet, Nuno, Boffetta, Paolo, and La Vecchia, Carlo
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Substance Misuse ,Prevention ,Nutrition ,Cancer ,Digestive Diseases ,Quality Education ,Case-Control Studies ,Educational Status ,Humans ,Life Style ,Male ,Risk Factors ,Stomach Neoplasms ,Public Health and Health Services ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
BackgroundThe causal pathway between high education and reduced risk of gastric cancer (GC) has not been explained. The study aimed at evaluating the mediating role of lifestyle factors on the relationship between education and GC METHODS: Ten studies with complete data on education and five lifestyle factors (smoking, alcohol drinking, fruit and vegetable intake, processed meat intake and salt consumption) were selected from a consortium of studies on GC including 4349 GC cases and 8441 controls. We created an a priori score based on the five lifestyle factors, and we carried out a counterfactual-based mediation analysis to decompose the total effect of education on GC into natural direct effect and natural indirect effect mediated by the combined lifestyle factors. Effects were expressed as odds ratios (ORs) with a low level of education as the reference category.ResultsThe natural direct and indirect effects of high versus low education were 0.69 (95% CI: 0.62-0.77) and 0.96 (95% CI: 0.95-0.97), respectively, corresponding to a mediated percentage of 10.1% (95% CI: 7.1-15.4%). The mediation effect was limited to men.ConclusionsThe mediation effect of the combined lifestyle factors on the relationship between education and GC is modest. Other potential pathways explaining that relationship warrants further investigation.
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- 2022
9. Implementation of the updated Sydney system biopsy protocol improves the diagnostic yield of gastric preneoplastic conditions: Results from a real-world study
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Latorre, Gonzalo, Vargas, José Ignacio, Shah, Shailja C., Ivanovic-Zuvic, Danisa, Achurra, Pablo, Fritzsche, Martín, Leung, Jai-Sen, Ramos, Bernardita, Jensen, Elisa, Uribe, Javier, Montero, Isabella, Gandara, Vicente, Robles, Camila, Bustamante, Miguel, Silva, Felipe, Dukes, Eitan, Corsi, Oscar, Martínez, Francisca, Binder, Victoria, Candia, Roberto, González, Robinson, Espino, Alberto, Agüero, Carlos, Sharp, Allan, Torres, Javiera, Roa, Juan Carlos, Pizarro, Margarita, Corvalan, Alejandro H., Rabkin, Charles S., Camargo, M. Constanza, and Riquelme, Arnoldo
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- 2024
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10. CD4/CD8 Ratio and Cancer Risk Among Adults With HIV
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Castilho, Jessica L, Bian, Aihua, Jenkins, Cathy A, Shepherd, Bryan E, Sigel, Keith, Gill, M John, Kitahata, Mari M, Silverberg, Michael J, Mayor, Angel M, Coburn, Sally B, Wiley, Dorothy, Achenbach, Chad J, Marconi, Vincent C, Bosch, Ronald J, Horberg, Michael A, Rabkin, Charles S, Napravnik, Sonia, Novak, Richard M, Mathews, W Christopher, Thorne, Jennifer E, Sun, Jing, Althoff, Keri N, Moore, Richard D, Sterling, Timothy R, and Sudenga, Staci L
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Sexually Transmitted Infections ,Lymphatic Research ,Infectious Diseases ,Hematology ,Prevention ,HIV/AIDS ,Lung Cancer ,Digestive Diseases ,Lymphoma ,Lung ,Cancer ,Rare Diseases ,Colo-Rectal Cancer ,Good Health and Well Being ,Acquired Immunodeficiency Syndrome ,Adult ,Anus Neoplasms ,CD4 Lymphocyte Count ,CD8-Positive T-Lymphocytes ,HIV Infections ,Humans ,Lung Neoplasms ,Lymphoma ,Non-Hodgkin ,Sarcoma ,Kaposi ,United States ,HIV ,CD4 ,CD8 ,cancer ,lung cancer ,anal cancer ,North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD) of the International Epidemiology Databases to Evaluate AIDS ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
BackgroundIndependent of CD4 cell count, a low CD4/CD8 ratio in people with HIV (PWH) is associated with deleterious immune senescence, activation, and inflammation, which may contribute to carcinogenesis and excess cancer risk. We examined whether low CD4/CD8 ratios predicted cancer among PWH in the United States and Canada.MethodsWe examined all cancer-free PWH with 1 or more CD4/CD8 values from North American AIDS Cohort Collaboration on Research and Design observational cohorts with validated cancer diagnoses between 1998 and 2016. We evaluated the association between time-lagged CD4/CD8 ratio and risk of specific cancers in multivariable, time-updated Cox proportional hazard models using restricted cubic spines. Models were adjusted for age, sex, race and ethnicity, hepatitis C virus, and time-updated CD4 cell count, HIV RNA, and history of AIDS-defining illness.ResultsAmong 83 893 PWH, there were 5628 incident cancers, including lung cancer (n = 755), Kaposi sarcoma (n = 501), non-Hodgkin lymphoma (n = 497), and anal cancer (n = 439). The median age at cohort entry was 43 years. The overall median 6-month lagged CD4/CD8 ratio was 0.52 (interquartile range = 0.30-0.82). Compared with a 6-month lagged CD4/CD8 of 0.80, a CD4/CD8 of 0.30 was associated with increased risk of any incident cancer (adjusted hazard ratio = 1.24 [95% confidence interval = 1.14 to 1.35]). The CD4/CD8 ratio was also inversely associated with non-Hodgkin lymphoma, Kaposi sarcoma, lung cancer, anal cancer, and colorectal cancer in adjusted analyses (all 2-sided P
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- 2022
11. The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes
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Thorell, Kaisa, Muñoz-Ramírez, Zilia Y., Wang, Difei, Sandoval-Motta, Santiago, Boscolo Agostini, Rajiv, Ghirotto, Silvia, Torres, Roberto C., Falush, Daniel, Camargo, M. Constanza, and Rabkin, Charles S.
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- 2023
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12. Comparative outcomes for mature T-cell and NK/T-cell lymphomas in people with and without HIV and to AIDS-defining lymphomas
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Koh, Min Jung, Merrill, Mwanasha H, Koh, Min Ji, Stuver, Robert, Alonso, Carolyn D, Foss, Francine M, Mayor, Angel M, Gill, John, Epeldegui, Marta, Cachay, Edward, Thorne, Jennifer E, Silverberg, Michael J, Horberg, Michael A, Althoff, Keri N, Nijhawan, Ank E, McGinnis, Kathleen A, Lee, Jennifer S, Rabkin, Charles S, Napravnik, Sonia, Li, Jun, Castilho, Jessica L, Shen, Changyu, and Jain, Salvia
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Oncology and Carcinogenesis ,Lymphoma ,Sexually Transmitted Infections ,Lymphatic Research ,Infectious Diseases ,Hematology ,Rare Diseases ,HIV/AIDS ,Cancer ,Acquired Immunodeficiency Syndrome ,Hodgkin Disease ,Humans ,Lymphoma ,AIDS-Related ,Lymphoma ,Large B-Cell ,Diffuse ,Lymphoma ,T-Cell ,Peripheral ,T-Lymphocytes ,Cardiovascular medicine and haematology - Abstract
There are no studies comparing the prognosis for mature T-cell lymphoma (TCL) in people with HIV (PWH) to people without HIV (PWoH) and to AIDS-defining B-cell lymphomas (A-BCLs) in the modern antiretroviral therapy era. North American AIDS Cohort Collaboration on Research and Design and Comprehensive Oncology Measures for Peripheral T-cell Lymphoma Treatment are cohorts that enroll patients diagnosed with HIV and TCL, respectively. In our study, 52, 64, 101, 500, and 246 PWH with histologic confirmation of TCL, primary central nervous system lymphoma, Burkitt's lymphoma, diffuse large B-cell lymphoma (DLBCL), and Hodgkin's lymphoma (HL), respectively, and 450 TCLs without HIV were eligible for analysis. At the time of TCL diagnosis, anaplastic large-cell lymphoma (ALCL) was the most common TCL subtype within PWH. Although PWH with TCL diagnosed between 1996 and 2009 experienced a low 5-year survival probability at 0.23 (95% confidence interval [CI]: 0.13, 0.41), we observed a marked improvement in their survival when diagnosed between 2010 and 2016 (0.69; 95% CI: 0.48, 1; P = .04) in contrast to TCLs among PWoH (0.45; 95% CI: 0.41, 0.51; P = .53). Similarly, PWH with ALCLs diagnosed between 1996 and 2009 were associated with a conspicuously inferior 5-year survival probability (0.17; 95% CI: 0.07, 0.42) and consistently lagged behind A-BCL subtypes such as Burkitt's (0.43; 95% CI:0.33, 0.57; P = .09) and DLBCL (0.17; 95% CI: 0.06, 0.46; P = .11) and behind HL (0.57; 95% CI: 0.50, 0.65; P < .0001). Despite a small number, those diagnosed between 2010 and 2016 experienced a remarkable improvement in survival (0.67; 95% CI: 0.3, 1) in comparison with PWoH (0.76; 95% CI: 0.66, 0.87; P = .58). Thus, our analysis confirms improved overall survival for aggressive B- and T-cell malignancies among PWH in the last decade.
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- 2022
13. Inverse Association between Dietary Iron Intake and Gastric Cancer: A Pooled Analysis of Case-Control Studies of the Stop Consortium
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Collatuzzo, Giulia, Teglia, Federica, Pelucchi, Claudio, Negri, Eva, Rabkin, Charles S, Liao, Linda M, Sinha, Rashmi, López-Carrillo, Lizbeth, Lunet, Nuno, Morais, Samantha, Aragonés, Nuria, Moreno, Victor, Vioque, Jesus, de la Hera, Manoli Garcia, Ward, Mary H, Malekzadeh, Reza, Pakseresht, Mohammadreza, Hernández-Ramírez, Raúl Ulises, López-Cervantes, Malaquias, Bonzi, Rossella, Dalmartello, Michela, Tsugane, Shoichiro, Hidaka, Akihisa, Camargo, M Constanza, Curado, Maria Paula, Zhang, Zuo-Feng, Zubair, Nadia, La Vecchia, Carlo, Shah, Shailja, and Boffetta, Paolo
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Biomedical and Clinical Sciences ,Nutrition and Dietetics ,Health Sciences ,Nutrition ,Cancer ,Prevention ,Digestive Diseases ,Case-Control Studies ,Diet ,Humans ,Iron ,Iron ,Dietary ,Risk Factors ,Stomach Neoplasms ,gastric cancer ,iron ,diet ,cancer subtypes ,cancer subsites ,Food Sciences ,Clinical sciences ,Nutrition and dietetics ,Public health - Abstract
Background: Inconsistent findings have been reported regarding the relationship between dietary iron intake and the risk of gastric cancer (GC). Methods: We pooled data from 11 case-control studies from the Stomach Cancer Pooling (StoP) Project. Total dietary iron intake was derived from food frequency questionnaires combined with national nutritional tables. We derived the odds ratios (ORs) and 95% confidence intervals (CIs) for quartiles of dietary iron through multivariable unconditional logistic regression models. Secondary analyses stratified by sex, smoking status, caloric intake, anatomical subsite and histological type were performed. Results: Among 4658 cases and 12247 controls, dietary iron intake was inversely associated with GC (per quartile OR 0.88; 95% CI: 0.83-0.93). Results were similar between cardia (OR = 0.85, 95% CI = 0.77-0.94) and non-cardia GC (OR = 0.87, 95% CI = 0.81-0.94), and for diffuse (OR = 0.79, 95% CI = 0.69-0.89) and intestinal type (OR = 0.88, 95% CI = 0.79-0.98). Iron intake exerted an independent effect from that of smoking and salt intake. Additional adjustment by meat and fruit/vegetable intake did not alter the results. Conclusions: Dietary iron is inversely related to GC, with no difference by subsite or histological type. While the results should be interpreted with caution, they provide evidence against a direct effect of iron in gastric carcinogenesis.
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- 2022
14. Coffee consumption and gastric cancer: a pooled analysis from the Stomach cancer Pooling Project consortium
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Martimianaki, Georgia, Bertuccio, Paola, Alicandro, Gianfranco, Pelucchi, Claudio, Bravi, Francesca, Carioli, Greta, Bonzi, Rossella, Rabkin, Charles S, Liao, Linda M, Sinha, Rashmi, Johnson, Ken, Hu, Jinfu, Palli, Domenico, Ferraroni, Monica, Lunet, Nuno, Morais, Samantha, Tsugane, Shoichiro, Hidaka, Akihisa, Hamada, Gerson Shigueaki, López-Carrillo, Lizbeth, Hernández-Ramírez, Raúl Ulises, Zaridze, David, Maximovitch, Dmitry, Aragonés, Nuria, Martin, Vicente, Ward, Mary H, Vioque, Jesus, de la Hera, Manoli Garcia, Zhang, Zuo-Feng, Kurtz, Robert C, Lagiou, Pagona, Lagiou, Areti, Trichopoulou, Antonia, Karakatsani, Anna, Malekzadeh, Reza, Camargo, M Constanza, Curado, Maria Paula, Boccia, Stefania, Boffetta, Paolo, Negri, Eva, and La Vecchia, Carlo
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Clinical Research ,Cancer ,Coffee ,Humans ,Logistic Models ,Observational Studies as Topic ,Odds Ratio ,Risk Factors ,Stomach Neoplasms ,cardia cancer ,case-control study ,coffee ,gastric cancer ,pooled analysis ,Oncology and Carcinogenesis ,Public Health and Health Services ,Oncology & Carcinogenesis - Abstract
ObjectiveThis study aimed to evaluate and quantify the relationship between coffee and gastric cancer using a uniquely large dataset from an international consortium of observational studies on gastric cancer, including data from 18 studies, for a total of 8198 cases and 21 419 controls.MethodsA two-stage approach was used to obtain the pooled odds ratios (ORs) and the corresponding 95% confidence intervals (CIs) for coffee drinkers versus never or rare drinkers. A one-stage logistic mixed-effects model with a random intercept for each study was used to estimate the dose-response relationship. Estimates were adjusted for sex, age and the main recognized risk factors for gastric cancer.ResultsCompared to never or rare coffee drinkers, the estimated pooled OR for coffee drinkers was 1.03 (95% CI, 0.94-1.13). When the amount of coffee intake was considered, the pooled ORs were 0.91 (95% CI, 0.81-1.03) for drinkers of 1-2 cups per day, 0.95 (95% CI, 0.82-1.10) for 3-4 cups, and 0.95 (95% CI, 0.79-1.15) for five or more cups. An OR of 1.20 (95% CI, 0.91-1.58) was found for heavy coffee drinkers (seven or more cups of caffeinated coffee per day). A positive association emerged for high coffee intake (five or more cups per day) for gastric cardia cancer only.ConclusionsThese findings better quantify the previously available evidence of the absence of a relevant association between coffee consumption and gastric cancer.
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- 2021
15. Timing of Antiretroviral Therapy Initiation and Risk of Cancer Among Persons Living With Human Immunodeficiency Virus
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Silverberg, Michael J, Leyden, Wendy, Hernández-Ramírez, Raúl U, Qin, Li, Lin, Haiqun, Justice, Amy C, Hessol, Nancy A, Achenbach, Chad J, D’Souza, Gypsyamber, Engels, Eric A, Althoff, Keri N, Mayor, Angel M, Sterling, Timothy R, Kitahata, Mari M, Bosch, Ronald J, Saag, Michael S, Rabkin, Charles S, Horberg, Michael A, Gill, M John, Grover, Surbhi, Mathews, W Christopher, Li, Jun, Crane, Heidi M, Gange, Stephen J, Lau, Bryan, Moore, Richard D, Dubrow, Robert, and Neugebauer, Romain S
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Hematology ,Sexually Transmitted Infections ,HIV/AIDS ,Lymphatic Research ,Prevention ,Emerging Infectious Diseases ,Clinical Research ,Infectious Diseases ,Health Disparities ,Cancer ,Rare Diseases ,Minority Health ,Lymphoma ,Women's Health ,Infection ,Good Health and Well Being ,Acquired Immunodeficiency Syndrome ,CD4 Lymphocyte Count ,HIV ,HIV Infections ,Humans ,Neoplasms ,Sarcoma ,Kaposi ,cancer ,epidemiology ,antiretroviral therapy ,causal inference ,Biological Sciences ,Medical and Health Sciences ,Microbiology ,Clinical sciences - Abstract
BackgroundPersons living with human immunodeficiency virus (HIV; PLWH) experience a high burden of cancer. It remains unknown which cancer types are reduced in PLWH with earlier initiation of antiretroviral therapy (ART).MethodsWe evaluated AIDS-free, ART-naive PLWH during 1996-2014 from 22 cohorts participating in the North American AIDS Cohort Collaboration on Research and Design. PLWH were followed from first observed CD4 of 350-500 cells/µL (baseline) until incident cancer, death, lost-to-follow-up, or December 2014. Outcomes included 6 cancer groups and 5 individual cancers that were confirmed by chart review or cancer registry linkage. We evaluated the effect of earlier (in the first 6 months after baseline) versus deferred ART initiation on cancer risk. Marginal structural models were used with inverse probability weighting to account for time-dependent confounding and informative right-censoring, with weights informed by subject's age, sex, cohort, baseline year, race/ethnicity, HIV transmission risk, smoking, viral hepatitis, CD4, and AIDS diagnoses.ResultsProtective results for earlier ART were found for any cancer (adjusted hazard ratio [HR] 0.57; 95% confidence interval [CI], .37-.86), AIDS-defining cancers (HR 0.23; 95% CI, .11-.49), any virus-related cancer (HR 0.30; 95% CI, .16-.54), Kaposi sarcoma (HR 0.25; 95% CI, .10-.61), and non-Hodgkin lymphoma (HR 0.22; 95% CI, .06-.73). By 15 years, there was also an observed reduced risk with earlier ART for virus-related NADCs (0.6% vs 2.3%; adjusted risk difference -1.6; 95% CI, -2.8, -.5).ConclusionsEarlier ART initiation has potential to reduce the burden of virus-related cancers in PLWH but not non-AIDS-defining cancers (NADCs) without known or suspected viral etiology.
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- 2021
16. Secular Trends in Breast Cancer Risk Among Women With HIV Initiating ART in North America
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Coburn, Sally B, Shiels, Meredith S, Silverberg, Michael J, Horberg, Michael A, Gill, M John, Brown, Todd T, Visvanathan, Kala, Connor, Avonne E, Napravnik, Sonia, Marcus, Julia L, Moore, Richard D, Mathews, W Chris, Mayor, Angel M, Sterling, Timothy R, Li, Jun, Rabkin, Charles S, D'Souza, Gyspyamber, Lau, Bryan, Althoff, Keri N, and AIDS, for the North American AIDS Cohort Collaboration on Research and Design of the International Epidemiology Databases to Evaluate
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Health Services and Systems ,Biomedical and Clinical Sciences ,Health Sciences ,Oncology and Carcinogenesis ,Prevention ,Breast Cancer ,Aging ,Sexually Transmitted Infections ,Infectious Diseases ,Women's Health ,HIV/AIDS ,Cancer ,Good Health and Well Being ,Adult ,Age Distribution ,Anti-HIV Agents ,Breast Neoplasms ,Cohort Studies ,Female ,HIV Infections ,Humans ,Incidence ,Middle Aged ,North America ,Proportional Hazards Models ,Risk Factors ,women with HIV ,breast cancer trends ,mortality ,North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD) of the International Epidemiology Databases to Evaluate AIDS ,Clinical Sciences ,Public Health and Health Services ,Virology ,Clinical sciences ,Epidemiology ,Public health - Abstract
BackgroundStudies suggest lower risk of breast cancer in women with HIV versus without HIV. These estimates may be biased by lower life expectancy and younger age distribution of women with HIV. Our analysis evaluated this bias and characterized secular trends in breast cancer among women with HIV initiating antiretroviral therapy. We hypothesized breast cancer risk would increase over time as mortality decreased.SettingWomen with HIV prescribed antiretroviral therapy in the North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD) from 1997 through 2016.MethodsWe estimated breast cancer hazard (cause-specific hazard ratios) and cumulative incidence accounting for competing risks (subdistribution hazard ratios) to assess changes in breast cancer risk over time. This was assessed overall (1997-2016) and within/across calendar periods. Analyses were adjusted for race/ethnicity and inverse probability weighted for cohort. Cumulative incidence was graphically assessed by calendar period and race/ethnicity.ResultsWe observed 11,587 women during 1997-2016, contributing 63 incident breast cancer diagnoses and 1,353 deaths [73,445 person-years (median follow-up = 4.5 years)]. Breast cancer cumulative incidence was 3.2% for 1997-2016. We observed no secular trends in breast cancer hazard or cumulative incidence. There were annual declines in the hazard and cumulative incidence of death (cause-specific hazard ratios and subdistribution hazard ratios: 0.89, 95% confidence interval: 0.87 to 0.91) which remained within and across calendar periods.ConclusionsThese findings contradict the hypothesis of increasing breast cancer risk with declining mortality over time among women with HIV, suggesting limited impact of changing mortality on breast cancer risk. Additional inquiry is merited as survival improves among women with HIV.
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- 2021
17. Identification of anti-Helicobacter pylori antibody signatures in gastric intestinal metaplasia
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Song, Lusheng, Song, Minkyo, Rabkin, Charles S., Chung, Yunro, Williams, Stacy, Torres, Javier, Corvalan, Alejandro H., Gonzalez, Robinson, Bellolio, Enrique, Shome, Mahasish, LaBaer, Joshua, Qiu, Ji, and Camargo, M. Constanza
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- 2023
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18. Weight gain among treatment‐naïve persons with HIV starting integrase inhibitors compared to non‐nucleoside reverse transcriptase inhibitors or protease inhibitors in a large observational cohort in the United States and Canada
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Bourgi, Kassem, Jenkins, Cathy A, Rebeiro, Peter F, Shepherd, Bryan E, Palella, Frank, Moore, Richard D, Althoff, Keri N, Gill, John, Rabkin, Charles S, Gange, Stephen J, Horberg, Michael A, Margolick, Joseph, Li, Jun, Wong, Cherise, Willig, Amanda, Lima, Viviane D, Crane, Heidi, Thorne, Jennifer, Silverberg, Michael, Kirk, Gregory, Mathews, William C, Sterling, Timothy R, Lake, Jordan, Koethe, John R, and Research and Design, for the North American AIDS Cohort Collaboration on
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Biomedical and Clinical Sciences ,Clinical Sciences ,Prevention ,Infectious Diseases ,HIV/AIDS ,Clinical Research ,Sexually Transmitted Infections ,Evaluation of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Adult ,CD4 Lymphocyte Count ,Canada ,Cohort Studies ,Female ,HIV Infections ,HIV Integrase Inhibitors ,HIV Protease Inhibitors ,Heterocyclic Compounds ,3-Ring ,Humans ,Male ,Middle Aged ,Oxazines ,Piperazines ,Pyridones ,Reverse Transcriptase Inhibitors ,United States ,Weight Gain ,integrase inhibitors ,weight gain ,obesity ,metabolic ,HIV ,North America ,North American AIDS Cohort Collaboration on Research and Design ,Public Health and Health Services ,Other Medical and Health Sciences ,Clinical sciences ,Epidemiology ,Public health - Abstract
IntroductionWeight gain following antiretroviral therapy (ART) initiation is common, potentially predisposing some persons with HIV (PWH) to cardio-metabolic disease. We assessed relationships between ART drug class and weight change among treatment-naïve PWH initiating ART in the North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD).MethodsAdult, treatment-naïve PWH in NA-ACCORD initiating integrase strand transfer inhibitor (INSTI), protease inhibitor (PI) or non-nucleoside reverse-transcriptase inhibitor (NNRTI)-based ART on/after 1 January 2007 were followed through 31 December 2016. Multivariate linear mixed effects models estimated weight up to five years after ART initiation, adjusting for age, sex, race, cohort site, HIV acquisition mode, treatment year, and baseline weight, plasma HIV-1 RNA level and CD4+ cell count. Due to shorter follow-up for PWH receiving newer INSTI drugs, weights for specific INSTIs were estimated at two years. Secondary analyses using logistic regression and all covariates from primary analyses assessed factors associated with >10% weight gain at two and five years.ResultsAmong 22,972 participants, 87% were male, and 41% were white. 49% started NNRTI-, 31% started PI- and 20% started INSTI-based regimens (1624 raltegravir (RAL), 2085 elvitegravir (EVG) and 929 dolutegravir (DTG)). PWH starting INSTI-based regimens had mean estimated five-year weight change of +5.9kg, compared to +3.7kg for NNRTI and +5.5kg for PI. Among PWH starting INSTI drugs, mean estimated two-year weight change was +7.2kg for DTG, +5.8kg for RAL and +4.1kg for EVG. Women, persons with lower baseline CD4+ cell counts, and those initiating INSTI-based regimens had higher odds of >10% body weight increase at two years (adjusted odds ratio = 1.37, 95% confidence interval: 1.20 to 1.56 vs. NNRTI).ConclusionsPWH initiating INSTI-based regimens gained, on average, more weight compared to NNRTI-based regimens. This phenomenon may reflect heterogeneous effects of ART agents on body weight regulation that require further exploration.
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- 2020
19. Association of Immunosuppression and Human Immunodeficiency Virus (HIV) Viremia With Anal Cancer Risk in Persons Living With HIV in the United States and Canada
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Hernández-Ramírez, Raúl U, Qin, Li, Lin, Haiqun, Leyden, Wendy, Neugebauer, Romain S, Althoff, Keri N, Hessol, Nancy A, Achenbach, Chad J, Brooks, John T, Gill, M John, Grover, Surbhi, Horberg, Michael A, Li, Jun, Mathews, W Christopher, Mayor, Angel M, Patel, Pragna, Rabkin, Charles S, Rachlis, Anita, Justice, Amy C, Moore, Richard D, Engels, Eric A, Silverberg, Michael J, Dubrow, Robert, Benson, Constance A, Bosch, Ronald J, Kirk, Gregory D, Mayer, Kenneth H, Grasso, Chris, Hogg, Robert S, Harrigan, P Richard, Montaner, Julio SG, Yip, Benita, Zhu, Julia, Salters, Kate, Gabler, Karyn, Buchacz, Kate, Gebo, Kelly A, Rodriguez, Benigno, Thorne, Jennifer E, Rabkin, Charles, Margolick, Joseph B, Jacobson, Lisa P, D’Souza, Gypsyamber, Klein, Marina B, Kroch, Abigail, Burchell, Ann, Betts, Adrian, Lindsay, Joanne, Hunter-Mellado, Robert F, Deeks, Steven G, Martin, Jeffrey N, Saag, Michael S, Mugavero, Michael J, Willig, James, Mathews, William C, Eron, Joseph J, Napravnik, Sonia, Kitahata, Mari M, Crane, Heidi M, Drozd, Daniel R, Sterling, Timothy R, Haas, David, Rebeiro, Peter, Turner, Megan, Fiellin, David, Gange, Stephen J, Anastos, Kathryn, McKaig, Rosemary G, Freeman, Aimee M, Van Rompaey, Stephen E, Morton, Liz, McReynolds, Justin, Lober, William B, Lee, Jennifer S, and You, Bin
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Medical Microbiology ,Biomedical and Clinical Sciences ,Immunology ,Digestive Diseases ,Prevention ,Sexually Transmitted Infections ,Cancer ,Infectious Diseases ,Clinical Research ,HIV/AIDS ,2.1 Biological and endogenous factors ,Aetiology ,Infection ,Good Health and Well Being ,Anus Neoplasms ,CD4 Lymphocyte Count ,Canada ,HIV ,HIV Infections ,Humans ,Immunosuppression Therapy ,United States ,Viral Load ,Viremia ,HIV infection ,CD4+T-cell count ,HIV-1 RNA viral load ,anal cancer ,risk ,North American AIDS Cohort Collaboration on Research and Design of the International Epidemiologic Databases to Evaluate AIDS ,CD4+ T-cell count ,Biological Sciences ,Medical and Health Sciences ,Microbiology ,Clinical sciences - Abstract
BackgroundPeople living with human immunodeficiency virus (HIV; PLWH) have a markedly elevated anal cancer risk, largely due to loss of immunoregulatory control of oncogenic human papillomavirus infection. To better understand anal cancer development and prevention, we determined whether recent, past, cumulative, or nadir/peak CD4+ T-cell count (CD4) and/or HIV-1 RNA level (HIV RNA) best predict anal cancer risk.MethodsWe studied 102 777 PLWH during 1996-2014 from 21 cohorts participating in the North American AIDS Cohort Collaboration on Research and Design. Using demographics-adjusted, cohort-stratified Cox models, we assessed associations between anal cancer risk and various time-updated CD4 and HIV RNA measures, including cumulative and nadir/peak measures during prespecified moving time windows. We compared models using the Akaike information criterion.ResultsCumulative and nadir/peak CD4 or HIV RNA measures from approximately 8.5 to 4.5 years in the past were generally better predictors for anal cancer risk than their corresponding more recent measures. However, the best model included CD4 nadir (ie, the lowest CD4) from approximately 8.5 years to 6 months in the past (hazard ratio [HR] for
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- 2020
20. Life-Expectancy Disparities Among Adults With HIV in the United States and Canada: The Impact of a Reduction in Drug- and Alcohol-Related Deaths Using the Lives Saved Simulation Model
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Althoff, Keri N, Chandran, Aruna, Zhang, Jinbing, Arevalo, Wendy Miranda, Gange, Stephen J, Sterling, Timothy R, Gill, M John, Justice, Amy C, Palella, Frank J, Rebeiro, Peter F, Silverberg, Michael J, Mayor, Angel M, Horberg, Michael A, Thorne, Jennifer E, Rabkin, Charles S, Mathews, W Christopher, Klein, Marina B, Humes, Elizabeth, Lee, Jennifer, Hogg, Robert, Moore, Richard D, and Research and Design of IeDEA, North American AIDS Cohort Collaboration on
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Public Health ,Health Sciences ,Health Disparities ,Drug Abuse (NIDA only) ,Infectious Diseases ,Clinical Research ,Substance Misuse ,HIV/AIDS ,Behavioral and Social Science ,Social Determinants of Health ,Sexually Transmitted Infections ,Evaluation of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Infection ,Good Health and Well Being ,Adult ,Aged ,Aged ,80 and over ,Female ,HIV Infections ,Humans ,Life Expectancy ,Male ,Middle Aged ,Models ,Theoretical ,North America ,Substance-Related Disorders ,Young Adult ,black women ,drug- and alcohol-related deaths ,health disparities ,Hispanic adults ,HIV ,life expectancy ,men who have sex with men ,people who inject drugs ,North American AIDS Cohort Collaboration on Research and Design (NA-ACCORD) of IeDEA ,Mathematical Sciences ,Medical and Health Sciences ,Epidemiology - Abstract
Improvements in life expectancy among people living with human immunodeficiency virus (PLWH) receiving antiretroviral treatment in the United States and Canada might differ among key populations. Given the difference in substance use among key populations and the current opioid epidemic, drug- and alcohol-related deaths might be contributing to the disparities in life expectancy. We sought to estimate life expectancy at age 20 years in key populations (and their comparison groups) in 3 time periods (2004-2007, 2008-2011, and 2012-2015) and the potential increase in expected life expectancy with a simulated 20% reduction in drug- and alcohol-related deaths using the novel Lives Saved Simulation model. Among 92,289 PLWH, life expectancy increased in all key populations and comparison groups from 2004-2007 to 2012-2015. Disparities in survival of approximately a decade persisted among black versus white men who have sex with men and people with (vs. without) a history of injection drug use. A 20% reduction in drug- and alcohol-related mortality would have the greatest life-expectancy benefit for black men who have sex with men, white women, and people with a history of injection drug use. Our findings suggest that preventing drug- and alcohol-related deaths among PLWH could narrow disparities in life expectancy among some key populations, but other causes of death must be addressed to further narrow the disparities.
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- 2019
21. The Immune Landscape of Cancer
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Thorsson, Vésteinn, Gibbs, David L, Brown, Scott D, Wolf, Denise, Bortone, Dante S, Yang, Tai-Hsien Ou, Porta-Pardo, Eduard, Gao, Galen F, Plaisier, Christopher L, Eddy, James A, Ziv, Elad, Culhane, Aedin C, Paull, Evan O, Sivakumar, IK Ashok, Gentles, Andrew J, Malhotra, Raunaq, Farshidfar, Farshad, Colaprico, Antonio, Parker, Joel S, Mose, Lisle E, Vo, Nam Sy, Liu, Jianfang, Liu, Yuexin, Rader, Janet, Dhankani, Varsha, Reynolds, Sheila M, Bowlby, Reanne, Califano, Andrea, Cherniack, Andrew D, Anastassiou, Dimitris, Bedognetti, Davide, Mokrab, Younes, Newman, Aaron M, Rao, Arvind, Chen, Ken, Krasnitz, Alexander, Hu, Hai, Malta, Tathiane M, Noushmehr, Houtan, Pedamallu, Chandra Sekhar, Bullman, Susan, Ojesina, Akinyemi I, Lamb, Andrew, Zhou, Wanding, Shen, Hui, Choueiri, Toni K, Weinstein, John N, Guinney, Justin, Saltz, Joel, Holt, Robert A, Rabkin, Charles S, Network, The Cancer Genome Atlas Research, Caesar-Johnson, Samantha J, Demchok, John A, Felau, Ina, Kasapi, Melpomeni, Ferguson, Martin L, Hutter, Carolyn M, Sofia, Heidi J, Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Zenklusen, Jean C, Zhang, Jiashan, Chudamani, Sudha, Liu, Jia, Lolla, Laxmi, Naresh, Rashi, Pihl, Todd, Sun, Qiang, Wan, Yunhu, Wu, Ye, Cho, Juok, DeFreitas, Timothy, Frazer, Scott, Gehlenborg, Nils, Getz, Gad, Heiman, David I, Kim, Jaegil, Lawrence, Michael S, Lin, Pei, Meier, Sam, Noble, Michael S, Saksena, Gordon, Voet, Doug, Zhang, Hailei, Bernard, Brady, Chambwe, Nyasha, Knijnenburg, Theo, Kramer, Roger, Leinonen, Kalle, Miller, Michael, Reynolds, Sheila, Shmulevich, Ilya, Thorsson, Vesteinn, Zhang, Wei, Akbani, Rehan, and Broom, Bradley M
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Biomedical and Clinical Sciences ,Immunology ,Cancer Genome Atlas Research Network - Abstract
(Immunity 48, 812–830.e1–e14; April 17, 2018) In the originally published version of this article, the authors neglected to include Younes Mokrab and Aaron M. Newman as co-authors and misspelled the names of authors Charles S. Rabkin and Ilya Shmulevich. The author names have been corrected here and online. In addition, the concluding sentence of the subsection “Immune Signature Compilation” in the Method Details in the original published article was deemed unclear because it did not specify differences among the gene set scoring methods. The concluding sentences now reads “Gene sets from Bindea et al., Senbabaoglu et al., and the MSigDB C7 collection were scored using single-sample gene set enrichment (ssGSEA) analysis (Barbie et al., 2009), as implemented in the GSVA R package (Hänzelmann et al., 2013). All other signatures were scored using methods found in the associated citations.”
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- 2019
22. Association of immunosuppression and HIV viraemia with non-Hodgkin lymphoma risk overall and by subtype in people living with HIV in Canada and the USA: a multicentre cohort study
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Hernández-Ramírez, Raúl U, Qin, Li, Lin, Haiqun, Leyden, Wendy, Neugebauer, Romain S, Althoff, Keri N, Achenbach, Chad J, Hessol, Nancy A, D'Souza, Gypsyamber, Gebo, Kelly A, Gill, M John, Grover, Surbhi, Horberg, Michael A, Li, Jun, Mathews, W Christopher, Mayor, Angel M, Park, Lesley S, Rabkin, Charles S, Salters, Kate, Justice, Amy C, Moore, Richard D, Engels, Eric A, Silverberg, Michael J, Dubrow, Robert, AIDS, North American AIDS Cohort Collaboration on Research and Design of the International Epidemiologic Databases to Evaluate, Betts, Adrian, Brooks, John T, Freeman, Aimee M, Van Rompaey, Stephen E, Burchell, Ann, Yip, Benita, You, Bin, Hogan, Brenna, Grasso, Chris, Hogg, Robert S, Benson, Constance A, Drozd, Daniel R, Sterling, Timothy R, Haas, David, Humes, Elizabeth, Crane, Heidi M, Willig, James, Eron, Joseph J, Martin, Jeffrey N, Saag, Michael S, Jing, Jerry, Zhang, Jinbing, Lindsay, Joanne, Hunter-Mellado, Robert F, Deeks, Steven G, Zhu, Julia, Montaner, Julio SG, McReynolds, Justin, Gabler, Karyn, Buchacz, Kate, Rodriguez, Benigno, Thorne, Jennifer E, Margolick, Joseph B, Anastos, Kathryn, Jacobson, Lisa P, Klein, Marina B, Kroch, Abigail, Morton, Liz, Turner, Megan, Fiellin, David, Gange, Stephen J, Mugavero, Michael J, Harrigan, P Richard, Rebeiro, Peter, Bosch, Ronald J, Kirk, Gregory D, Mayer, Kenneth H, McKaig, Rosemary G, Coburn, Sally, Napravnik, Sonia, Kitahata, Mari M, Lober, William B, and Lee, Jennifer S
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Oncology and Carcinogenesis ,Sexually Transmitted Infections ,Hematology ,Prevention ,Lymphoma ,Rare Diseases ,Cancer ,Infectious Diseases ,Lymphatic Research ,HIV/AIDS ,Aetiology ,2.1 Biological and endogenous factors ,Infection ,Good Health and Well Being ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,CD4 Lymphocyte Count ,Canada ,Cohort Studies ,Female ,HIV Infections ,Humans ,Immune Tolerance ,Lymphoma ,Non-Hodgkin ,Male ,Middle Aged ,Risk Assessment ,United States ,Viral Load ,Young Adult ,North American AIDS Cohort Collaboration on Research and Design of the International Epidemiologic Databases to Evaluate AIDS ,Medical and Health Sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundResearch is needed to better understand relations between immunosuppression and HIV viraemia and risk for non-Hodgkin lymphoma, a common cancer in people living with HIV. We aimed to identify key CD4 count and HIV RNA (viral load) predictors of risk for non-Hodgkin lymphoma, overall and by subtype.MethodsWe studied people living with HIV during 1996-2014 from 21 Canadian and US cohorts participating in the North American AIDS Cohort Collaboration on Research and Design. To determine key independent predictors of risk for non-Hodgkin lymphoma, we assessed associations with time-updated recent, past, cumulative, and nadir or peak measures of CD4 count and viral load, using demographics-adjusted, cohort-stratified Cox models, and we compared models using Akaike's information criterion.FindingsOf 102 131 people living with HIV during the study period, 712 people developed non-Hodgkin lymphoma. The key independent predictors of risk for overall non-Hodgkin lymphoma were recent CD4 count (ie, lagged by 6 months;
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- 2019
23. Contributions of traditional and HIV-related risk factors on non-AIDS-defining cancer, myocardial infarction, and end-stage liver and renal diseases in adults with HIV in the USA and Canada: a collaboration of cohort studies
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Althoff, Keri N, Gebo, Kelly A, Moore, Richard D, Boyd, Cynthia M, Justice, Amy C, Wong, Cherise, Lucas, Gregory M, Klein, Marina B, Kitahata, Mari M, Crane, Heidi, Silverberg, Michael J, Gill, M John, Mathews, William Christopher, Dubrow, Robert, Horberg, Michael A, Rabkin, Charles S, Klein, Daniel B, Re, Vincent Lo, Sterling, Timothy R, Desir, Fidel A, Lichtenstein, Kenneth, Willig, James, Rachlis, Anita R, Kirk, Gregory D, Anastos, Kathryn, Palella, Frank J, Thorne, Jennifer E, Eron, Joseph, Jacobson, Lisa P, Napravnik, Sonia, Achenbach, Chad, Mayor, Angel M, Patel, Pragna, Buchacz, Kate, Jing, Yuezhou, Gange, Stephen J, and Research and Design, North American AIDS Cohort Collaboration on
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Public Health ,Biomedical and Clinical Sciences ,Clinical Sciences ,Health Sciences ,Digestive Diseases ,Prevention ,HIV/AIDS ,Sexually Transmitted Infections ,Infectious Diseases ,Liver Disease ,Infection ,Good Health and Well Being ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,Canada ,End Stage Liver Disease ,Female ,HIV Infections ,Humans ,Kidney Failure ,Chronic ,Male ,Middle Aged ,Myocardial Infarction ,Neoplasms ,Risk Factors ,United States ,Young Adult ,North American AIDS Cohort Collaboration on Research and Design ,Medical and Health Sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundAdults with HIV have an increased burden of non-AIDS-defining cancers, myocardial infarction, end-stage liver disease, and end-stage renal disease. The objective of this study was to estimate the population attributable fractions (PAFs) of preventable or modifiable HIV-related and traditional risk factors for non-AIDS-defining cancers, myocardial infarction, end-stage liver disease, and end-stage renal disease outcomes.MethodsWe included participants receiving care in academic and community-based outpatient HIV clinical cohorts in the USA and Canada from Jan 1, 2000, to Dec 31, 2014, who contributed to the North American AIDS Cohort Collaboration on Research and Design and who had validated non-AIDS-defining cancers, myocardial infarction, end-stage liver disease, or end-stage renal disease outcomes. Traditional risk factors were tobacco smoking, hypertension, elevated total cholesterol, type 2 diabetes, renal impairment (stage 4 chronic kidney disease), and hepatitis C virus and hepatitis B virus infections. HIV-related risk factors were low CD4 count (400 copies per mL), and history of a clinical AIDS diagnosis. PAFs and 95% CIs were estimated to quantify the proportion of outcomes that could be avoided if the risk factor was prevented.FindingsIn each of the study populations for the four outcomes (1405 of 61 500 had non-AIDS-defining cancer, 347 of 29 515 had myocardial infarctions, 387 of 35 044 had end-stage liver disease events, and 255 of 35 620 had end-stage renal disease events), about 17% were older than 50 years at study entry, about 50% were non-white, and about 80% were men. Preventing smoking would avoid 24% (95% CI 13-35) of these cancers and 37% (7-66) of the myocardial infarctions. Preventing elevated total cholesterol and hypertension would avoid the greatest proportion of myocardial infarctions: 44% (30-58) for cholesterol and 42% (28-56) for hypertension. For liver disease, the PAF was greatest for hepatitis C infection (33%; 95% CI 17-48). For renal disease, the PAF was greatest for hypertension (39%; 26-51) followed by elevated total cholesterol (22%; 13-31), detectable HIV RNA (19; 9-31), and low CD4 cell count (13%; 4-21).InterpretationThe substantial proportion of non-AIDS-defining cancers, myocardial infarction, end-stage liver disease, and end-stage renal disease outcomes that could be prevented with interventions on traditional risk factors elevates the importance of screening for these risk factors, improving the effectiveness of prevention (or modification) of these risk factors, and creating sustainable care models to implement such interventions during the decades of life of adults living with HIV who are receiving care.FundingNational Institutes of Health, US Centers for Disease Control and Prevention, the US Agency for Healthcare Research and Quality, the US Health Resources and Services Administration, the Canadian Institutes of Health Research, the Ontario Ministry of Health and Long Term Care, and the Government of Alberta.
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- 2019
24. Reduced Cancer Survival Among Adults With HIV and AIDS-Defining Illnesses Despite No Difference in Cancer Stage at Diagnosis
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Grover, Surbhi, Desir, Fidel, Jing, Yuezhou, Bhatia, Rohini K, Trifiletti, Daniel M, Swisher-McClure, Samuel, Kobie, Julie, Moore, Richard D, Rabkin, Charles S, Silverberg, Michael J, Salters, Kate, Mathews, William Christopher, Gill, Michael John, Thorne, Jennifer E, Castilho, Jessica, Kitahata, Mari M, Justice, Amy, Horberg, Michael A, Achenbach, Chad J, Mayor, Angel M, and Althoff, Keri N
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Biomedical and Clinical Sciences ,Health Services and Systems ,Health Sciences ,Public Health ,Oncology and Carcinogenesis ,Cancer ,Hematology ,Rare Diseases ,Infectious Diseases ,HIV/AIDS ,Prevention ,Lymphatic Research ,Lung Cancer ,Lymphoma ,Lung ,Sexually Transmitted Infections ,Aetiology ,2.4 Surveillance and distribution ,Good Health and Well Being ,Adult ,Female ,HIV Infections ,Humans ,Male ,Middle Aged ,Neoplasm Staging ,Neoplasms ,Survival Analysis ,HIV ,AIDS ,anal cancer ,oropharynx cancer ,cervical cancer ,lung cancer ,Hodgkin lymphoma ,survival ,mortality ,North American AIDS Cohort Collaboration on Research and Design ,Clinical Sciences ,Public Health and Health Services ,Virology ,Clinical sciences ,Epidemiology ,Public health - Abstract
BackgroundIt is not known whether immune dysfunction is associated with increased risk of death after cancer diagnosis in persons with HIV (PWH). AIDS-defining illness (ADI) can signal significant immunosuppression. Our objective was to determine differences in cancer stage and mortality rates in PWH with and without history of ADI.MethodsPWH with anal, oropharynx, cervical, lung cancers, or Hodgkin lymphoma diagnoses from January 2000 to December 2009 in the North American AIDS Cohort Collaboration on Research and Design were included.ResultsAmong 81,865 PWH, 814 had diagnoses included in the study; 341 (39%) had a history of ADI at time of cancer diagnosis. For each cancer type, stage at diagnosis did not differ by ADI (P > 0.05). Mortality and survival estimates for cervical cancer were limited by n = 5 diagnoses. Adjusted mortality rate ratios showed a 30%-70% increase in mortality among those with ADI for all cancer diagnoses, although only lung cancer was statistically significant. Survival after lung cancer diagnosis was poorer in PWH with ADI vs. without (P = 0.0001); the probability of survival was also poorer in those with ADI at, or before other cancers although not statistically significant.ConclusionsPWH with a history of ADI at lung cancer diagnosis had higher mortality and poorer survival after diagnosis compared to those without. Although not statistically significant, the findings of increased mortality and decreased survival among those with ADI (vs. without) were consistent for all other cancers, suggesting the need for further investigations into the role of HIV-related immune suppression and cancer outcomes.
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- 2018
25. Salt intake and gastric cancer: a pooled analysis within the Stomach cancer Pooling (StoP) Project
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Morais, Samantha, Costa, Adriana, Albuquerque, Gabriela, Araújo, Natália, Pelucchi, Claudio, Rabkin, Charles S., Liao, Linda M., Sinha, Rashmi, Zhang, Zuo-Feng, Hu, Jinfu, Johnson, Kenneth C., Palli, Domenico, Ferraroni, Monica, Bonzi, Rossella, Yu, Guo-Pei, López-Carrillo, Lizbeth, Malekzadeh, Reza, Tsugane, Shoichiro, Hidaka, Akihisa, Hamada, Gerson Shigueaki, Zaridze, David, Maximovitch, Dmitry, Vioque, Jesus, de la Hera, Manoli García, Moreno, Victor, Vanaclocha-Espi, Mercedes, Ward, Mary H., Pakseresht, Mohammadreza, Hernández-Ramirez, Raúl Ulises, López-Cervantes, Malaquias, Pourfarzi, Farhad, Mu, Lina, Kurtz, Robert C., Boccia, Stefania, Pastorino, Roberta, Lagiou, Areti, Lagiou, Pagona, Boffetta, Paolo, Camargo, M. Constanza, Curado, Maria Paula, Negri, Eva, La Vecchia, Carlo, and Lunet, Nuno
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- 2022
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26. Recent Abacavir Use Increases Risk of Type 1 and Type 2 Myocardial Infarctions Among Adults With HIV
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Elion, Richard A, Althoff, Keri N, Zhang, Jinbing, Moore, Richard D, Gange, Stephen J, Kitahata, Mari M, Crane, Heidi M, Drozd, Daniel R, Stein, James H, Klein, Marina B, Eron, Joseph J, Silverberg, Michael J, Mathews, William C, Justice, Amy C, Sterling, Timothy R, Rabkin, Charles S, Mayor, Angel M, Klein, Daniel B, Horberg, Michael A, Bosch, Ronald J, Eyawo, Oghenowede, and Palella, Frank J
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Biomedical and Clinical Sciences ,Clinical Sciences ,Health Sciences ,Heart Disease ,HIV/AIDS ,Infectious Diseases ,Aging ,Sexually Transmitted Infections ,Heart Disease - Coronary Heart Disease ,Prevention ,Cardiovascular ,Good Health and Well Being ,Adult ,Aged ,Antirheumatic Agents ,CD4 Lymphocyte Count ,Cohort Studies ,Dideoxynucleosides ,Female ,HIV Infections ,Humans ,Male ,Middle Aged ,Myocardial Infarction ,North America ,Risk Assessment ,Risk Factors ,HIV ,abacavir ,myocardial infarction ,causal inference ,North American AIDS Cohort Collaboration on Research and Design of IeDEA ,Public Health and Health Services ,Virology ,Clinical sciences ,Epidemiology ,Public health - Abstract
BackgroundThere is persistent confusion as to whether abacavir (ABC) increases the risk of myocardial infarction (MI), and whether such risk differs by type 1 (T1MI) or 2 (T2MI) MI in adults with HIV.MethodsIncident MIs in North American Cohort Collaboration on Research and Design participants were identified from 2001 to 2013. Discrete time marginal structural models addressed channeling biases and time-dependent confounding to estimate crude hazard ratio (HR) and adjusted hazard ratio (aHR) and 95% confidence intervals; analyses were performed for T1MI and T2MI separately. A sensitivity analysis evaluated whether Framingham risk score (FRS) modified the effect of ABC on MI occurrence.ResultsEight thousand two hundred sixty-five adults who initiated antiretroviral therapy contributed 29,077 person-years and 123 MI events (65 T1MI and 58 T2MI). Median follow-up time was 2.9 (interquartile range 1.4-5.1) years. ABC initiators were more likely to have a history of injection drug use, hepatitis C virus infection, hypertension, diabetes, impaired kidney function, hyperlipidemia, low (
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- 2018
27. Multimorbidity Among Persons Living with Human Immunodeficiency Virus in the United States
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Wong, Cherise, Gange, Stephen J, Moore, Richard D, Justice, Amy C, Buchacz, Kate, Abraham, Alison G, Rebeiro, Peter F, Koethe, John R, Martin, Jeffrey N, Horberg, Michael A, Boyd, Cynthia M, Kitahata, Mari M, Crane, Heidi M, Gebo, Kelly A, Gill, M John, Silverberg, Michael J, Palella, Frank J, Patel, Pragna, Samji, Hasina, Thorne, Jennifer, Rabkin, Charles S, Mayor, Angel, Althoff, Keri N, Freeman, Aimee M, Cescon, Angela, Rachlis, Anita R, Rogers, Ben, Rodriguez, Benigno, Grasso, Chris, Benson, Constance A, Drozd, Daniel R, Fiellin, David, Haas, David, Kirk, Gregory D, Willig, James, Globerman, Jason, Brooks, John T, Eron, Joseph J, Montaner, Julio SG, Gabler, Karyn, Anastos, Kathryn, Mayer, Kenneth H, Jacobson, Lisa P, Kopansky-Giles, Madison, Klein, Marina B, Turner, Megan, Mugavero, Michael J, Saag, Michael S, Harrigan, P Richard, Dubrow, Robert, Hunter-Mellado, Robert F, Hogg, Robert S, Bosch, Ronald J, McKaig, Rosemary G, Bebawy, Sally, Rourke, Sean B, Napravnik, Sonia, Boswell, Stephen, and Sterling, Timothy R
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Biomedical and Clinical Sciences ,Clinical Sciences ,Prevention ,Sexually Transmitted Infections ,Cardiovascular ,Infectious Diseases ,Clinical Research ,HIV/AIDS ,Good Health and Well Being ,Adult ,Age Factors ,Black People ,Cohort Studies ,Diabetes Mellitus ,Type 2 ,Female ,HIV ,HIV Infections ,Heterosexuality ,Homosexuality ,Male ,Humans ,Hypercholesterolemia ,Hypertension ,Longitudinal Studies ,Male ,Middle Aged ,Multimorbidity ,Renal Insufficiency ,Chronic ,Sexual and Gender Minorities ,United States ,White People ,multimorbidity ,age-associated conditions ,aging ,North American AIDS Cohort Collaboration on Research and Design ,Biological Sciences ,Medical and Health Sciences ,Microbiology ,Clinical sciences - Abstract
BackgroundAge-associated conditions are increasingly common among persons living with human immunodeficiency virus (HIV) (PLWH). A longitudinal investigation of their accrual is needed given their implications on clinical care complexity. We examined trends in the co-occurrence of age-associated conditions among PLWH receiving clinical care, and differences in their prevalence by demographic subgroup.MethodsThis cohort study was nested within the North American AIDS Cohort Collaboration on Research and Design. Participants from HIV outpatient clinics were antiretroviral therapy-exposed PLWH receiving clinical care (ie, ≥1 CD4 count) in the United States during 2000-2009. Multimorbidity was irreversible, defined as having ≥2: hypertension, diabetes mellitus, chronic kidney disease, hypercholesterolemia, end-stage liver disease, or non-AIDS-related cancer. Adjusted prevalence ratios (aPR) and 95% confidence intervals (CIs) comparing demographic subgroups were obtained by Poisson regression with robust error variance, using generalized estimating equations for repeated measures.ResultsAmong 22969 adults, 79% were male, 36% were black, and the median baseline age was 40 years (interquartile range, 34-46 years). Between 2000 and 2009, multimorbidity prevalence increased from 8.2% to 22.4% (Ptrend < .001). Adjusting for age, this trend was still significant (P < .001). There was no difference by sex, but blacks were less likely than whites to have multimorbidity (aPR, 0.87; 95% CI, .77-.99). Multimorbidity was the highest among heterosexuals, relative to men who have sex with men (aPR, 1.16; 95% CI, 1.01-1.34). Hypertension and hypercholesterolemia most commonly co-occurred.ConclusionsMultimorbidity prevalence has increased among PLWH. Comorbidity prevention and multisubspecialty management of increasingly complex healthcare needs will be vital to ensuring that they receive needed care.
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- 2018
28. Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas
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Liu, Yang, Sethi, Nilay S, Hinoue, Toshinori, Schneider, Barbara G, Cherniack, Andrew D, Sanchez-Vega, Francisco, Seoane, Jose A, Farshidfar, Farshad, Bowlby, Reanne, Islam, Mirazul, Kim, Jaegil, Chatila, Walid, Akbani, Rehan, Kanchi, Rupa S, Rabkin, Charles S, Willis, Joseph E, Wang, Kenneth K, McCall, Shannon J, Mishra, Lopa, Ojesina, Akinyemi I, Bullman, Susan, Pedamallu, Chandra Sekhar, Lazar, Alexander J, Sakai, Ryo, Network, The Cancer Genome Atlas Research, Caesar-Johnson, Samantha J, Demchok, John A, Felau, Ina, Kasapi, Melpomeni, Ferguson, Martin L, Hutter, Carolyn M, Sofia, Heidi J, Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Zenklusen, Jean C, Zhang, Jiashan, Chudamani, Sudha, Liu, Jia, Lolla, Laxmi, Naresh, Rashi, Pihl, Todd, Sun, Qiang, Wan, Yunhu, Wu, Ye, Cho, Juok, DeFreitas, Timothy, Frazer, Scott, Gehlenborg, Nils, Getz, Gad, Heiman, David I, Lawrence, Michael S, Lin, Pei, Meier, Sam, Noble, Michael S, Saksena, Gordon, Voet, Doug, Zhang, Hailei, Bernard, Brady, Chambwe, Nyasha, Dhankani, Varsha, Knijnenburg, Theo, Kramer, Roger, Leinonen, Kalle, Liu, Yuexin, Miller, Michael, Reynolds, Sheila, Shmulevich, Ilya, Thorsson, Vesteinn, Zhang, Wei, Broom, Bradley M, Hegde, Apurva M, Ju, Zhenlin, Korkut, Anil, Li, Jun, Liang, Han, Ling, Shiyun, Liu, Wenbin, Lu, Yiling, Mills, Gordon B, Ng, Kwok-Shing, Rao, Arvind, Ryan, Michael, Wang, Jing, Weinstein, John N, Zhang, Jiexin, Abeshouse, Adam, Armenia, Joshua, Chakravarty, Debyani, Chatila, Walid K, Bruijn, Inode, Gao, Jianjiong, Gross, Benjamin E, Heins, Zachary J, Kundra, Ritika, La, Konnor, and Ladanyi, Marc
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Biological Sciences ,Genetics ,Genetic Testing ,Colo-Rectal Cancer ,Cancer ,Rare Diseases ,Cancer Genomics ,Digestive Diseases ,Human Genome ,Biotechnology ,Adenocarcinoma ,Aneuploidy ,Chromosomal Instability ,DNA Methylation ,DNA Polymerase II ,DNA-Binding Proteins ,Epigenesis ,Genetic ,Female ,Gastrointestinal Neoplasms ,Gene Regulatory Networks ,Heterogeneous-Nuclear Ribonucleoproteins ,Humans ,Male ,Microsatellite Instability ,MutL Protein Homolog 1 ,Mutation ,Poly-ADP-Ribose Binding Proteins ,Polymorphism ,Single Nucleotide ,Proto-Oncogene Proteins p21(ras) ,RNA-Binding Proteins ,SOX9 Transcription Factor ,Cancer Genome Atlas Research Network ,cancer ,colon ,colorectal ,epigenetic ,esophagus ,genomic ,methylation ,rectum ,stomach ,tumor ,Neurosciences ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis ,Biochemistry and cell biology ,Oncology and carcinogenesis - Abstract
We analyzed 921 adenocarcinomas of the esophagus, stomach, colon, and rectum to examine shared and distinguishing molecular characteristics of gastrointestinal tract adenocarcinomas (GIACs). Hypermutated tumors were distinct regardless of cancer type and comprised those enriched for insertions/deletions, representing microsatellite instability cases with epigenetic silencing of MLH1 in the context of CpG island methylator phenotype, plus tumors with elevated single-nucleotide variants associated with mutations in POLE. Tumors with chromosomal instability were diverse, with gastroesophageal adenocarcinomas harboring fragmented genomes associated with genomic doubling and distinct mutational signatures. We identified a group of tumors in the colon and rectum lacking hypermutation and aneuploidy termed genome stable and enriched in DNA hypermethylation and mutations in KRAS, SOX9, and PCBP1.
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- 2018
29. The Immune Landscape of Cancer
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Thorsson, Vésteinn, Gibbs, David L, Brown, Scott D, Wolf, Denise, Bortone, Dante S, Ou Yang, Tai-Hsien, Porta-Pardo, Eduard, Gao, Galen F, Plaisier, Christopher L, Eddy, James A, Ziv, Elad, Culhane, Aedin C, Paull, Evan O, Sivakumar, IK Ashok, Gentles, Andrew J, Malhotra, Raunaq, Farshidfar, Farshad, Colaprico, Antonio, Parker, Joel S, Mose, Lisle E, Vo, Nam Sy, Liu, Jianfang, Liu, Yuexin, Rader, Janet, Dhankani, Varsha, Reynolds, Sheila M, Bowlby, Reanne, Califano, Andrea, Cherniack, Andrew D, Anastassiou, Dimitris, Bedognetti, Davide, Mokrab, Younes, Newman, Aaron M, Rao, Arvind, Chen, Ken, Krasnitz, Alexander, Hu, Hai, Malta, Tathiane M, Noushmehr, Houtan, Pedamallu, Chandra Sekhar, Bullman, Susan, Ojesina, Akinyemi I, Lamb, Andrew, Zhou, Wanding, Shen, Hui, Choueiri, Toni K, Weinstein, John N, Guinney, Justin, Saltz, Joel, Holt, Robert A, Rabkin, Charles S, Lazar, Alexander J, Serody, Jonathan S, Demicco, Elizabeth G, Disis, Mary L, Vincent, Benjamin G, Shmulevich, Ilya, Caesar-Johnson, Samantha J, Demchok, John A, Felau, Ina, Kasapi, Melpomeni, Ferguson, Martin L, Hutter, Carolyn M, Sofia, Heidi J, Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Zenklusen, Jean C, Zhang, Jiashan Julia, Chudamani, Sudha, Liu, Jia, Lolla, Laxmi, Naresh, Rashi, Pihl, Todd, Sun, Qiang, Wan, Yunhu, Wu, Ye, Cho, Juok, DeFreitas, Timothy, Frazer, Scott, Gehlenborg, Nils, Getz, Gad, Heiman, David I, Kim, Jaegil, Lawrence, Michael S, Lin, Pei, Meier, Sam, Noble, Michael S, Saksena, Gordon, Voet, Doug, Zhang, Hailei, Bernard, Brady, Chambwe, Nyasha, Knijnenburg, Theo, Kramer, Roger, Leinonen, Kalle, Miller, Michael, and Reynolds, Sheila
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Cancer ,Immunotherapy ,Cancer Genomics ,Genetics ,Human Genome ,2.1 Biological and endogenous factors ,Inflammatory and immune system ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,Child ,Female ,Genomics ,Humans ,Interferon-gamma ,Macrophages ,Male ,Middle Aged ,Neoplasms ,Prognosis ,Th1-Th2 Balance ,Transforming Growth Factor beta ,Wound Healing ,Young Adult ,Cancer Genome Atlas Research Network ,cancer genomics ,immune subtypes ,immuno-oncology ,immunomodulatory ,immunotherapy ,integrative network analysis ,tumor immunology ,tumor microenvironment - Abstract
We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising 33 diverse cancer types by utilizing data compiled by TCGA. Across cancer types, we identified six immune subtypes-wound healing, IFN-γ dominant, inflammatory, lymphocyte depleted, immunologically quiet, and TGF-β dominant-characterized by differences in macrophage or lymphocyte signatures, Th1:Th2 cell ratio, extent of intratumoral heterogeneity, aneuploidy, extent of neoantigen load, overall cell proliferation, expression of immunomodulatory genes, and prognosis. Specific driver mutations correlated with lower (CTNNB1, NRAS, or IDH1) or higher (BRAF, TP53, or CASP8) leukocyte levels across all cancers. Multiple control modalities of the intracellular and extracellular networks (transcription, microRNAs, copy number, and epigenetic processes) were involved in tumor-immune cell interactions, both across and within immune subtypes. Our immunogenomics pipeline to characterize these heterogeneous tumors and the resulting data are intended to serve as a resource for future targeted studies to further advance the field.
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- 2018
30. White Blood Cell Count, Neutrophil-to-Lymphocyte Ratio, and Incident Cancer in the UK Biobank
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Song, Minkyo, primary, Graubard, Barry I., additional, Loftfield, Erikka, additional, Rabkin, Charles S., additional, and Engels, Eric A., additional
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- 2024
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31. EBV-Associated Gastric Cancer; An In Situ Hybridization Assay on Tissue Microarray: A Multi-Region Study from Four Major Provinces of Iran
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Abolhasani, Maryam, primary, Mohseni, Ata ollah, additional, Shakeri, Ramin, additional, Khavanin, Ali, additional, Khajehei, Mehrdad, additional, Omidi, Abbasali, additional, Geramizadeh, Bita, additional, Shafigh, Ensieh, additional, Naghshvar, Farshad, additional, Fathizadeh, Payam, additional, Taghizadehgan, Leyla, additional, Gharib, Atoosa, additional, Gulley, Margaret L., additional, Dawsey, Sanford M., additional, Malekzadeh, Reza, additional, Rabkin, Charles S., additional, and Vasei, Mohammad, additional
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- 2024
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32. Associations of circulating mediators of inflammation, cell regulation and immune response with esophageal squamous cell carcinoma
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Camargo, M. Constanza, Song, Minkyo, Ito, Hidemi, Oze, Isao, Koyanagi, Yuriko N., Kasugai, Yumiko, Rabkin, Charles S., and Matsuo, Keitaro
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- 2021
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33. Human Herpesviruses: Nasopharyngeal Carcinoma and Other Epithelial Tumors
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Young, Lawrence S., primary, Dawson, Christopher W., additional, Woodman, Ciaran B. J., additional, Rabkin, Charles S., additional, and Lo, Kwok Wai, additional
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- 2022
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34. Association of CD4+ T-cell Count, HIV-1 RNA Viral Load, and Antiretroviral Therapy With Kaposi Sarcoma Risk Among HIV-infected Persons in the United States and Canada
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Dubrow, Robert, Qin, Li, Lin, Haiqun, Hernández-Ramírez, Raúl U, Neugebauer, Romain S, Leyden, Wendy, Althoff, Keri N, Achenbach, Chad J, Hessol, Nancy A, Modur, Sharada P, D'Souza, Gypsyamber, Bosch, Ronald J, Grover, Surbhi, Horberg, Michael A, Kitahata, Mari M, Mayor, Angel M, Novak, Richard M, Rabkin, Charles S, Sterling, Timothy R, Goedert, James J, Justice, Amy C, Engels, Eric A, Moore, Richard D, and Silverberg, Michael J
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Medical Microbiology ,Biomedical and Clinical Sciences ,Public Health ,Health Sciences ,HIV/AIDS ,Infectious Diseases ,Emerging Infectious Diseases ,Sexually Transmitted Infections ,Prevention ,Infection ,Adult ,Anti-HIV Agents ,CD4 Lymphocyte Count ,CD4-Positive T-Lymphocytes ,Canada ,Cohort Studies ,Female ,HIV Infections ,Humans ,Male ,Middle Aged ,Proportional Hazards Models ,RNA ,Viral ,Sarcoma ,Kaposi ,United States ,Viral Load ,Kaposi sarcoma ,HIV infection ,acquired immunodeficiency syndrome ,CD4(+) T-cell count ,HIV-1 RNA viral load ,antiretroviral therapy ,North American AIDS Cohort Collaboration on Research and Design of the International Epidemiologic Databases to Evaluate AIDS ,Clinical Sciences ,Public Health and Health Services ,Virology ,Clinical sciences ,Epidemiology ,Public health - Abstract
BackgroundKaposi sarcoma (KS) remains common among HIV-infected persons. To better understand KS etiology and to help target prevention efforts, we comprehensively examined a variety of CD4 T-cell count and HIV-1 RNA viral load (VL) measures, as well as antiretroviral therapy (ART) use, to determine independent predictors of KS risk.SettingNorth American AIDS Cohort Collaboration on Research and Design.MethodsWe followed HIV-infected persons during 1996-2009 from 18 cohorts. We used time-updated Cox regression to model relationships between KS risk and recent, lagged, trajectory, and cumulative CD4 count or VL measures, as well as ART use. We used Akaike's information criterion and global P values to derive a final model.ResultsIn separate models, the relationship between each measure and KS risk was highly significant (P < 0.0001). Our final mutually adjusted model included recent CD4 count [hazard ratio (HR) for
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- 2017
35. Identification of anti-Epstein-Barr virus (EBV) antibody signature in EBV-associated gastric carcinoma
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Song, Lusheng, Song, Minkyo, Camargo, M. Constanza, Van Duine, Jennifer, Williams, Stacy, Chung, Yunro, Kim, Kyoung-Mee, Lissowska, Jolanta, Sivins, Armands, Gao, Weimin, Karthikeyan, Kailash, Park, Jin, Leja, Marcis, Cohen, Jeffrey I., LaBaer, Joshua, Qiu, Ji, and Rabkin, Charles S.
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- 2021
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36. Association between ABO and Duffy blood types and circulating chemokines and cytokines
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Van Alsten, Sarah C., Aversa, John G., Santo, Loredana, Camargo, M. Constanza, Kemp, Troy, Liu, Jia, Huang, Wen-Yi, Sampson, Joshua, and Rabkin, Charles S.
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- 2021
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37. The Association of Anemia With Survival Among People With HIV Following Antiretroviral Initiation in the NA-ACCORD 2007-2016.
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Lang, Raynell, Coburn, Sally B., Gill, M. John, Grossman, Jennifer, Gebo, Kelly A., Horberg, Michael A., Mayor, Angel M., Justice, Amy C., Bosch, Ronald J., Silverberg, Michael J., Rabkin, Charles S., Sterling, Timothy R., Thorne, Jennifer E., Moore, Richard D., and Althoff, Keri N.
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- 2024
38. Low Epstein–Barr Virus Prevalence in Cardia Gastric Cancer Among a High-Incidence Chinese Population
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Aversa, John G., Song, Minkyo, Hu, Nan, Goldstein, Alisa M., Hewitt, Stephen M., Gulley, Margaret L., Dawsey, Sanford, Camargo, Maria Constanza, Taylor, Philip R., and Rabkin, Charles S.
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- 2021
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39. Associations between eosinophils and cancer risk in the UK Biobank.
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Wang, Jeanny H., Rabkin, Charles S., Engels, Eric A., and Song, Minkyo
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DISEASE risk factors ,EOSINOPHILS ,CHRONIC leukemia ,DIFFUSE large B-cell lymphomas ,LEUKOCYTE count ,INTRAHEPATIC bile ducts ,CHOLANGIOCARCINOMA - Abstract
Eosinophils exhibit anti‐tumor cytotoxic responses in the tumor microenvironment and may contribute to tumor immunosurveillance. To assess the relationship between circulating eosinophils and cancer risk, we analyzed data from 443,542 adults aged 38–73 in the UK Biobank, who were initially cancer‐free, had over a year of follow‐up, and baseline white blood cell count measurements. Using multivariable Cox regression, we estimated hazard ratios (aHR) and 95% confidence intervals (95%CI) for each quartile increase in absolute eosinophil count (AEC) across 58 cancer types, adjusting for relevant confounders. During a median follow‐up of 5.8 years, 22,747 incident cancer cases were diagnosed. We observed an inverse association, which met Bonferroni significance, between AEC and overall cancer risk (aHR, 95%CI 0.97, 0.95–0.98). Notably, 16 cancer types showed borderline associations (p <.05) with AEC, with 12 types displaying an inverse relationship. These included four hematologic cancers (acute and other myeloid leukemia, other lymphocytic leukemia, and chronic lymphocytic leukemia/small lymphocytic lymphoma; aHR range; 0.58–0.87) and eight nonhematologic cancers (melanoma and nose/middle ear, soft tissue/heart, gum/other mouth, tongue, lung, colon, and breast cancers; aHR range: 0.65–0.95). Higher AEC showed a borderline significant association with increased risk for intrahepatic bile duct cancer, Hodgkin lymphoma, diffuse large B‐cell lymphoma, and chronic myeloid leukemia (aHR range: 1.13–1.42). Our study, the largest to date, provides insights into the relationship between blood eosinophils and a comprehensive list of incident cancers. The inverse association between AEC and overall cancer risk suggests a protective role for eosinophils in tumor surveillance. [ABSTRACT FROM AUTHOR]
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- 2024
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40. Brief Report: Protease Inhibitors Versus Nonnucleoside Reverse Transcriptase Inhibitors and the Risk of Cancer Among People With HIV.
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Coburn, Sally B., Pimentel, Noel, Leyden, Wendy, Kitahata, Mari M., Moore, Richard D., Althoff, Keri N., Gill, M. John, Lang, Raynell, Horberg, Michael A., D'Souza, GypsyAmber, Hussain, Shehnaz K., Dubrow, Robert, Novak, Richard M., Rabkin, Charles S., Park, Lesley S., Sterling, Timothy R., Neugebauer, Romain S., Silverberg, Michael J., Benson, Constance A., and Bosch, Ronald J.
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- 2024
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41. White Blood Cell Count, Neutrophil-to-Lymphocyte Ratio, and Incident Cancer in the UK Biobank.
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Minkyo Song, Graubard, Barry I., Loftfield, Erikka, Rabkin, Charles S., and Engels, Eric A.
- Abstract
Background: The peripheral white blood cell (WBC) and neutrophil-to-lymphocyte ratio (NLR) reflect levels of inflammation and adaptive immunity. They are associated with cancer prognosis, but their associations with cancer incidence are not established. Methods: We evaluated 443,540 cancer-free adults in the UK Biobank with data on total WBC and its subsets, follow-up starting one year after baseline. Cox regression was used to estimate hazard ratios (HR) per quartile of WBC or NLR for incidence of 73 cancer types. Results: 22,747 incident cancers were diagnosed during a median of 6.9 years of follow-up. WBC was associated with risk of cancer overall [HR, 1.05; 95% confidence interval (CI), 1.03-1.06], chronic lymphocytic leukemia/small lymphocytic leukemia (CLL/SLL, 2.79; 95% CI, 2.45-3.18), lung cancer (1.14, 95% CI, 1.08-1.20), and breast cancer (95% CI, 1.05-1.02-1.08). NLR was positively associated with cancer overall (HR, 1.03; 95% CI, 1.02-1.04, per quartile) and kidney cancer (1.16; 95% CI, 1.07-1.25), and inversely with CLL/SLL (0.38; 95% CI, 0.33-0.42). Conclusions: High WBC or NLR may reflect excessive inflammatory status, promoting development of some cancers. Conversely, low NLR indicates a relative rise in lymphocytes, which could reflect an increase in circulating premalignant cells before CLL/SLL diagnosis. Peripheral WBC and NLR, in combination with other clinical information or biomarkers, may be useful tools for cancer risk stratification. [ABSTRACT FROM AUTHOR]
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- 2024
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42. Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations
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Au, Wing-Yan, Chiu, Brian, Fan, Lei, Li, Zheng, LAM, Tai Hing, Liang, Raymond, Yeh, Su-Peng, Xu, Jun, Ip, Dennis Kai Ming, Li, Gandi, Xu, Gang, Wang, Xiaodong, Bai, Ou, Cai, Qing-Qing, Xia, Yi, Chen, Jie-Rong, Luo, Chun-Ling, Xiong, Xiang-Yu, Zeng, Yanni, Wei, Pan-Pan, Liu, Chu-Jun, Liu, Yu-Xiang, Cao, Yu-Lu, He, Shuai, Liu, Yang, Ha, Jeslin Chian Hung, Khoo, Lay Poh, Kee, Rebecca Xiangpin, Tan, Jing, Liu, Yanhui, Zhang, Fen, Feng, Yanfen, Rao, Huilan, Chng, Wee Joo, Chan, Jason Yong Sheng, Somasundaram, Nagavalli D/O, Tao, Miriam, Ras, Mohamad Farid Bin Harunal, Yeoh, Kheng-Wei, Goh, Yeow Tee, Ong, Shin Yeu, Grigoropoulos, Nicholas Francis, Wong, Esther Kam Yin, Pang, Jane Wan Lu, Lim, Jing Quan, Chia, Burton Kuan Hui, Kim, Seok Jin, Yoon, Sang Eun, Choi, Seungkyu, Kuo, Ching-Yuan, Chen, Tsai-Yun, Su, Yu-Chieh, Huang, Wen-Tsung, Lee, Ming-Yang, Yao, Wenxiu, Ngan, Kai-Cheong, Liu, Herman, Lee, Harold, Yip, Sze-Fai, Liu, Jie, Li, Jianyong, Rabkin, Charles S., Berndt, Sonja, Bassig, Bryan, Hu, Wei, Zhao, Mingfeng, Li, Yuming, Zhai, Qiongli, Shao, Zonghong, Qiu, Lugui, Wang, Jianxiang, Xu, Fu-Ping, Chen, Ling, Hou, Yu, Xu, Shuangnian, Huang, Zhen, Xie, Mingling, Li, Ming, Zhong, Shilong, Zhang, Yan, Gu, Dongqing, Wang, Xin, Foo, Jia Nee, Li, Zhiqiang, Dai, Juncheng, Sun, Liangdan, Wang, Zhenzhen, Liu, Hong, Zhou, Hui, Sun, Yonghu, Koh, Woon-Puay, Heng, Chew-Kiat, Hong, Chew Soo, Ahn, Jeeyun, Park, Kyu Hyung, Tin, Aung, Gu, Jieruo, Xia, Xiaojun, Li, Bo, Yu, Xueqing, Lin, Guo-Wang, Xu, Caigang, Chen, Kexin, Huang, Hui-Qiang, Chen, Jieping, Song, Bao, Chan, John K C, Li, Wenyu, Liu, Weiping, Shih, Lee-Yung, Chuang, Wen-Yu, Kim, Won Seog, Tan, Wen, Peng, Rou-Jun, Laurensia, Yurike, Cheah, Daryl Ming Zhe, Huang, DaChuan, Cheng, Chee Leong, Su, Yi-Jiun, Tan, Soo-Yong, Ng, Siok-Bian, Tang, Tiffany Pooi Ling, Han, Kyudong, Wang, Vivien Ya-Fan, Jia, Wei-Hua, Pei, Zhong, Li, Ya-Jun, Gao, Song, Shi, Yongyong, Hu, Zhibin, Zhang, Furen, Zhang, Ben, Zeng, Yi-Xin, Shen, Hongbing, He, Lin, Ong, Choon Kiat, Lim, Soon Thye, Chanock, Stephen, Kwong, Yok-Lam, Lin, Dongxin, Rothman, Nathaniel, Khor, Chiea Chuen, Lan, Qing, and Bei, Jin-Xin
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- 2020
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43. Aspirin but not statins is inversely related to gastric cancer with a duration-risk effect: results from the Stomach Cancer Pooling (StoP) Project Consortium
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Pastorino, Roberta, primary, Marafon, Denise Pires, additional, Sassano, Michele, additional, Hoxhaj, Ilda, additional, Pelucchi, Claudio, additional, Liao, Linda M., additional, Rabkin, Charles S., additional, Sinha, Rashmi, additional, Lunet, Nuno, additional, Morais, Samantha, additional, Zaridze, David, additional, Maximovitch, Dmitry, additional, Aragonés, Nuria, additional, Castaño-Vinyals, Gemma, additional, Gómez-Acebo, Inés, additional, López-Carrillo, Lizbeth, additional, López-Cervantes, Malaquias, additional, Bonzi, Rossella, additional, Turati, Federica, additional, Boffetta, Paolo, additional, Camargo, Maria Constanza, additional, Curado, Maria Paula, additional, Vioque, Jesus, additional, Zhang, Zuo-Feng, additional, Negri, Eva, additional, Vecchia, Carlo La, additional, and Boccia, Stefania, additional
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- 2024
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44. Sexually transmitted infections, benign prostatic hyperplasia and lower urinary tract symptom‐related outcomes: results from the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial
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Breyer, Benjamin N, Huang, Wen-Yi, Rabkin, Charles S, Alderete, John F, Pakpahan, Ratna, Beason, Tracey S, Kenfield, Stacey A, Mabie, Jerome, Ragard, Lawrence, Wolin, Kathleen Y, Grubb, Robert L, Andriole, Gerald L, and Sutcliffe, Siobhan
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Sexually Transmitted Infections ,Urologic Diseases ,Cancer ,Infectious Diseases ,Prevention ,Infection ,Good Health and Well Being ,Aged ,Humans ,Incidence ,Lower Urinary Tract Symptoms ,Male ,Middle Aged ,Prevalence ,Prospective Studies ,Prostatic Hyperplasia ,Retrospective Studies ,Sexually Transmitted Diseases ,sexually transmitted infection ,benign prostatic hyperplasia ,nocturia ,Prostate lung colorectal and ovarian cancer screening trial ,Urology & Nephrology ,Clinical sciences ,Oncology and carcinogenesis - Abstract
ObjectiveTo examine whether a history of sexually transmitted infections (STIs) or positive STI serology is associated with prevalent and incident benign prostatic hyperplasia (BPH)/lower urinary tract symptoms (LUTS)-related outcomes in the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial.MethodsSelf-reported history of STIs (gonorrhoea, syphilis) was ascertained at baseline, and serological evidence of STIs (Chlamydia trachomatis, Trichomonas vaginalis, human papillomavirus (HPV)-16, HPV-18, herpes simplex virus type 2, human herpesvirus type 8 and cytomegalovirus) was detected in baseline serum specimens. We used data collected on the baseline questionnaire, as well as results from the baseline prostate-specific antigen (PSA) test and digital rectal examination (DRE), to define prevalent BPH/LUTS-related outcomes as evidence of LUTS (self-reported diagnosis of an enlarged prostate/BPH, BPH surgery or nocturia [waking ≥2 times/night to urinate]) and evidence of prostate enlargement (PSA > 1.4 ng/mL or prostate volume ≥30 mL) in men without prostate cancer. We created a similar definition of incident BPH using data from the follow-up questionnaire completed 5-13 years after enrolment (self-reported diagnosis of an enlarged prostate/BPH or nocturia), data on finasteride use during follow-up, and results from the follow-up PSA tests and DREs. We used Poisson regression with robust variance estimation to calculate prevalence ratios (PRs) in our cross-sectional analysis of self-reported (n = 32 900) and serologically detected STIs (n = 1 143) with prevalent BPH/LUTS, and risk ratios in our prospective analysis of self-reported STIs with incident BPH/LUTS (n = 5 226).ResultsGenerally null results were observed for associations of a self-reported history of STIs and positive STI serologies with prevalent and incident BPH/LUTS-related outcomes, with the possible exception of T. vaginalis infection. This STI was positively associated with prevalent nocturia (PR 1.36, 95% confidence interval (CI) 1.18-1.65), prevalent large prostate volume (PR 1.21 95% CI 1.02-1.43), and any prevalent BPH/LUTS (PR 1.32 95% CI 1.09-1.61); too few men had information on both STI serologies and incident BPH/LUTS to investigate the associations between T. vaginalis infection and incident BPH/LUTS-related outcomes.ConclusionsOur findings do not support associations of several known STIs with BPH/LUTS-related outcomes, although T. vaginalis infection may warrant further study.
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- 2016
45. Reproductive factors, hormonal interventions, and gastric cancer risk in the Stomach cancer Pooling (StoP) Project
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Song, Minkyo, primary, Jayasekara, Harindra, additional, Pelucchi, Claudio, additional, Rabkin, Charles S., additional, Johnson, Kenneth C., additional, Hu, Jinfu, additional, Palli, Domenico, additional, Ferraroni, Monica, additional, Liao, Linda M., additional, Bonzi, Rossella, additional, Zaridze, David, additional, Maximovitch, Dmitry, additional, Aragonés, Nuria, additional, Martin, Vicente, additional, Castaño-Vinyals, Gemma, additional, Guevara, Marcela, additional, Tsugane, Shoichiro, additional, Hamada, Gerson Shigueaki, additional, Hidaka, Akihisa, additional, Negri, Eva, additional, Ward, Mary H., additional, Sinha, Rashmi, additional, Lagiou, Areti, additional, Lagiou, Pagona, additional, Boffetta, Paolo, additional, Curado, Maria Paula, additional, Lunet, Nuno, additional, Vioque, Jesus, additional, Zhang, Zuo-Feng, additional, La Vecchia, Carlo, additional, and Camargo, M. Constanza, additional
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- 2023
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46. Neutrophil-to-lymphocyte ratio and mortality in the United States general population
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Song, Minkyo, Graubard, Barry I., Rabkin, Charles S., and Engels, Eric A.
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- 2021
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47. Coffee consumption and gastric cancer: a pooled analysis from the Stomach cancer Pooling Project consortium
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Martimianaki, Georgia, Bertuccio, Paola, Alicandro, Gianfranco, Pelucchi, Claudio, Bravi, Francesca, Carioli, Greta, Bonzi, Rossella, Rabkin, Charles S., Liao, Linda M., Sinha, Rashmi, Johnson, Ken, Hu, Jinfu, Palli, Domenico, Ferraroni, Monica, Lunet, Nuno, Morais, Samantha, Tsugane, Shoichiro, Hidaka, Akihisa, Hamada, Gerson Shigueaki, López-Carrillo, Lizbeth, Hernández-Ramírez, Raúl Ulises, Zaridze, David, Maximovitch, Dmitry, Aragonés, Nuria, Martin, Vicente, Ward, Mary H., Vioque, Jesus, Garcia de la Hera, Manoli, Zhang, Zuo-Feng, Kurtz, Robert C., Lagiou, Pagona, Lagiou, Areti, Trichopoulou, Antonia, Karakatsani, Anna, Malekzadeh, Reza, Camargo, M. Constanza, Curado, Maria Paula, Boccia, Stefania, Boffetta, Paolo, Negri, Eva, and La Vecchia, Carlo
- Published
- 2022
- Full Text
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48. Risk of Breast Cancer With CXCR4-Using HIV Defined by V3 Loop Sequencing
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Goedert, James J, Swenson, Luke C, Napolitano, Laura A, Haddad, Mojgan, Anastos, Kathryn, Minkoff, Howard, Young, Mary, Levine, Alexandra, Adeyemi, Oluwatoyin, Seaberg, Eric C, Aouizerat, Bradley, Rabkin, Charles S, Harrigan, P Richard, and Hessol, Nancy A
- Subjects
Biomedical and Clinical Sciences ,Health Sciences ,Oncology and Carcinogenesis ,Clinical Research ,Cancer ,Breast Cancer ,Adult ,Breast Neoplasms ,Case-Control Studies ,Female ,Genetic Predisposition to Disease ,HIV ,HIV Infections ,Humans ,Middle Aged ,Receptors ,CXCR4 ,chemokine receptors ,AIDS ,breast cancer ,parallel sequencing ,women ,Clinical Sciences ,Public Health and Health Services ,Virology ,Clinical sciences ,Epidemiology ,Public health - Abstract
ObjectiveEvaluate the risk of female breast cancer associated with HIV-CXCR4 (X4) tropism as determined by various genotypic measures.MethodsA breast cancer case-control study, with pairwise comparisons of tropism determination methods, was conducted. From the Women's Interagency HIV Study repository, one stored plasma specimen was selected from 25 HIV-infected cases near the breast cancer diagnosis date and 75 HIV-infected control women matched for age and calendar date. HIV-gp120 V3 sequences were derived by Sanger population sequencing (PS) and 454-pyro deep sequencing (DS). Sequencing-based HIV-X4 tropism was defined using the geno2pheno algorithm, with both high-stringency DS [false-positive rate (3.5) and 2% X4 cutoff], and lower stringency DS (false-positive rate, 5.75 and 15% X4 cutoff). Concordance of tropism results by PS, DS, and previously performed phenotyping was assessed with kappa (κ) statistics. Case-control comparisons used exact P values and conditional logistic regression.ResultsIn 74 women (19 cases, 55 controls) with complete results, prevalence of HIV-X4 by PS was 5% in cases vs 29% in controls (P = 0.06; odds ratio, 0.14; confidence interval: 0.003 to 1.03). Smaller case-control prevalence differences were found with high-stringency DS (21% vs 36%, P = 0.32), lower stringency DS (16% vs 35%, P = 0.18), and phenotyping (11% vs 31%, P = 0.10). HIV-X4 tropism concordance was best between PS and lower stringency DS (93%, κ = 0.83). Other pairwise concordances were 82%-92% (κ = 0.56-0.81). Concordance was similar among cases and controls.ConclusionsHIV-X4 defined by population sequencing (PS) had good agreement with lower stringency DS and was significantly associated with lower odds of breast cancer.
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- 2015
49. Association of the VACS Index With Hospitalization Among People With HIV in the NA-ACCORD
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Qian, Yuhang, Moore, Richard D., Coburn, Sally B., Davy-Mendez, Thibaut, Akgün, Kathleen M., McGinnis, Kathleen A., Silverberg, Michael J., Colasanti, Jonathan A., Cachay, Edward R., Horberg, Michael A., Rabkin, Charles S., Jacobson, Jeffrey M., Gill, M. John, Mayor, Angel M., Kirk, Gregory D., Gebo, Kelly A., Nijhawan, Ank E., and Althoff, Keri N.
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- 2022
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50. Association of immunosuppression and HIV viraemia with non-Hodgkin lymphoma risk overall and by subtype in people living with HIV in Canada and the USA: a multicentre cohort study
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Betts, Adrian, Brooks, John T., Freeman, Aimee M., Van Rompaey, Stephen E., Burchell, Ann, Yip, Benita, You, Bin, Hogan, Brenna, Grasso, Chris, Hogg, Robert S., Benson, Constance A., Drozd, Daniel R., Sterling, Timothy R., Haas, David, Humes, Elizabeth, Crane, Heidi M., Willig, James, Eron, Joseph J., Martin, Jeffrey N., Saag, Michael S., Jing, Jerry, Zhang, Jinbing, Lindsay, Joanne, Hunter-Mellado, Robert F., Deeks, Steven G., Zhu, Julia, Montaner, Julio S.G., McReynolds, Justin, Gabler, Karyn, Buchacz, Kate, Rodriguez, Benigno, Thorne, Jennifer E., Margolick, Joseph B., Anastos, Kathryn, Jacobson, Lisa P., Klein, Marina B., Kroch, Abigail, Morton, Liz, Turner, Megan, Fiellin, David, Gange, Stephen J., Mugavero, Michael J., Harrigan, P. Richard, Rebeiro, Peter, Bosch, Ronald J., Kirk, Gregory D., Mayer, Kenneth H., McKaig, Rosemary G., Coburn, Sally, Napravnik, Sonia, Kitahata, Mari M., Lober, William B., Lee, Jennifer S., Hernández-Ramírez, Raúl U, Qin, Li, Lin, Haiqun, Leyden, Wendy, Neugebauer, Romain S, Althoff, Keri N, Achenbach, Chad J, Hessol, Nancy A, D'Souza, Gypsyamber, Gebo, Kelly A, Gill, M John, Grover, Surbhi, Horberg, Michael A, Li, Jun, Mathews, W Christopher, Mayor, Angel M, Park, Lesley S, Rabkin, Charles S, Salters, Kate, Justice, Amy C, Moore, Richard D, Engels, Eric A, Silverberg, Michael J, and Dubrow, Robert
- Published
- 2019
- Full Text
- View/download PDF
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