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Asian rice gall midge, Orseolia oryzae (Wood-Mason) is the important endemic pest of Rice crop in the North coastal zone of Andhra Pradesh causing grain yield losses. A field experiment was conducted during Kharif 2022 at Agriculture College farm, Naira to know the relationship of various abiotic parameters with rice gall midge incidence in four different dates of sowings. The peak incidence of rice gall midge was noticed with 13.14 per cent silver shoots during the 46th SMW (Standard Meteorological Week) on the fourth date of sowing (17-09-2022). The correlation studies between percent silver shoots (fourth date of sowing) and abiotic factors revealed that maximum temperature (r = -0.245), morning relative humidity (r = -0.384) and rainfall (r = -0.121) showed a non-significant negative correlation, whereas minimum temperature (r = 0.613) showed nonsignificant positive correlation and evening relative humidity (r = 0.774) showed a significant positive correlation. [ABSTRACT FROM AUTHOR]

A field experiment was carried out to determine the comparative efficacy of newer insecticides with botanical insecticides, viz., Chlorantraniliprole 0.4G @ 10 kg ha-1, Fipronil 5 SC @ 1500 ml ha-1, Acephate 95 SG @ 750 g ha-1, Lambda cyhalothrin 4.9 CS @ 550 ml ha-1, Thiamethoxam 25 WG @ 150 g ha-1 @ Carbofuran 3 CG @ 30 kg ha-1, Carbosulfan 25 EC @ 875 ml ha-1, Cedarwood oil @ 1000 ml ha-1, Azadirachtin 0.03 EC @ 2500 ml ha-1, applied at 20 and 35 DAT, against rice gall midge, Orseolia oryzae (Wood-Mason) in rice during kharif, 2019 and 2020. All the treatments were effective for gall midge. Lambda cyhalothrin 4.9 CS @ 550 ml ha-1 was significantly superior (>80% reduction over control) for gall midge management and grain yield was 4.75 t ha-1. Both botanical and untreated plots had more number of parasitized gall midge (40-53.3%) than other chemical treated plots. [ABSTRACT FROM AUTHOR]

The Asian rice gall midge (Orseolia oryzae (Wood-Mason)) is a major insect pest in rice cultivation. Therefore, development of a reliable system for the timely prediction of this insect would be a valuable tool in pest management. In this study, occurring between the period from 2013–2018: (i) gall midge populations were recorded using a light trap with an incandescent bulb, and (ii) climatological parameters (air temperature, air relative humidity, rainfall and insulations) were measured at four intensive rice cropping agroecosystems that are endemic for gall midge incidence in India. In addition, weekly cumulative trapped gall midge populations and weekly averages of climatological data were subjected to count time series (Integer-valued Generalized Autoregressive Conditional Heteroscedastic—INGARCH) and machine learning (Artificial Neural Network—ANN, and Support Vector Regression—SVR) models. The empirical results revealed that the ANN with exogenous variable (ANNX) model outperformed INGRACH with exogenous variable (INGRCHX) and SVR with exogenous variable (SVRX) models in the prediction of gall midge populations in both training and testing data sets. Moreover, the Diebold–Mariano (DM) test confirmed the significant superiority of the ANNX model over INGARCHX and SVRX models in modeling and predicting rice gall midge populations. Utilizing the presented efficient early warning system based on a robust statistical model to predict the build-up of gall midge population could greatly contribute to the design and implementation of both proactive and more sustainable site-specific pest management strategies to avoid significant rice yield losses.

Resistance against the Asian rice gall midge, Orseolia oryzae (Wood-Mason), is conferred by any one of the 11 major genes identified so far. Resistance conferred by these genes may or may not involve a hypersensitive reaction (HR). Three of these gall midge resistance genes have been already cloned. In this study, expression of 20 key genes, identified based on our earlier studies, in 12 rice genotypes was profiled through quantitative real time (RT)-PCR at two time points. Results highlighted diversity in resistance pathways either involving reactive oxygen species (ROS)-hypersensitive reaction (HR) salicylic acid-mediated systemic acquired resistance or strong suppression of ROS-HR at initial stage itself. Some of the susceptible test genotypes derived from crosses between gall midge resistant and susceptible parents expressed trace activity of these genes even during compatible interaction. [ABSTRACT FROM AUTHOR]

African rice gall midge, Orseolia oryzivora Harris and Gagné, is a major pest of rice in Africa. Depsite its economic importance, its chemical ecology is not well understood. Here, we assessed behavioral and electrophysiological responses of O. oryzivora to host plant volatiles. In olfactometer bioassays, mated female O. oryzivora were attracted to volatiles emitted from intact rice plants but were repelled by volatiles collected from plants infested by conspecifics. In a choice test, there was a preference for volatiles from uninfested plants over those from infested plants. Coupled gas chromatography-electroantennography analyses of panicle volatiles isolated four electrophysiologically active components: ( S)-linalool, 4,8-dimethyl-1,3,7-nonatriene, ( E)-caryophyllene, and ( R/S)-( E)-nerolidol. A synthetic blend of volatiles at the same concentration and ratio as that from an intact plant was attractive to mated females, whereas a blend based on the ratio of volatiles from an infested plant was repellent. This suggests that O. oryzivora uses olfaction for host plant recognition. The identification of blends of volatiles emitted by plants that can both attract and repel O. oryzivora may aid the development of sustainable control measures. [ABSTRACT FROM AUTHOR]

Rice black streaked dwarf virus (RBSDV), southern rice black streaked dwarf virus (SRBSDV), rice ragged stunt virus (RRSV) and rice gall dwarf virus (RGDV) are common pathogens that affect rice in eastern and southeastern Asia. They are transmitted by the white-backed planthopper, brown planthopper, leafhopper and small brown planthopper, respectively, and require different control strategies. Although rice plants develop characteristic symptoms when infected by each virus, infected plants may also exhibit similar symptoms, which can hinder accurate symptom-based diagnoses. Thus, a one-step multiplex reverse transcription-PCR assay was developed for the simultaneous detection of the four viruses. The amplification products in singly or co-infected plants were easily distinguished during agarose gel electrophoresis. The optimized multiplex reverse transcription-PCR method was used to analyze 582 field samples collected from southern China between 2013 and 2015. RGDV was the most common virus, detected in ∼36.1% of the samples, while RRSV, SRBSDV, and RBSDV were detected in ∼34.0%, ∼30.1%, and ∼0.5% of the samples, respectively. There were also differences in the geographical distributions of the four viruses. RRSV mostly occurred in southern Hainan, RGDV was mainly distributed in southwestern and northeastern Guangdong, SRBSDV was detected across southern China, and RBSDV was detected only in the northern parts of southern China. [ABSTRACT FROM AUTHOR]

African rice gall midge (AfRGM) is one of the most destructive pests of irrigated and lowland African ecologies. This study aimed to identify the quantitative trait loci (QTL) associated with AfRGM pest incidence and resistance in three independent bi-parental rice populations (ITA306xBW348-1, ITA306xTOG7106 and ITA306xTOS14519), and to conduct meta QTL (mQTL) analysis to explore whether any genomic regions are conserved across different genetic backgrounds. Composite interval mapping (CIM) conducted on the three populations independently uncovered a total of 28 QTLs associated with pest incidence (12) and pest severity (16). The number of QTLs per population associated with AfRGM resistance varied from three in the ITA306xBW348-1 population to eight in the ITA306xTOG7106 population. Each QTL individually explained 1.3 to 34.1% of the phenotypic variance. The major genomic region for AfRGM resistance had a LOD score and R2 of 60.0 and 34.1% respectively, and mapped at 111 cM on chromosome 4 (qAfrGM4) in the ITA306xTOS14519 population. The meta-analysis reduced the number of QTLs from 28 to 17 mQTLs, each explaining 1.3 to 24.5% of phenotypic variance, and narrowed the confidence intervals by 2.2 cM. There was only one minor effect mQTL on chromosome 1 that was common in the TOS14519 and TOG7106 genetic backgrounds; all other mQTLs were background specific. We are currently fine-mapping and validating the major effect genomic region on chromosome 4 (qAfRGM4). This is the first report in mapping the genomic regions associated with the AfRGM resistance, and will be highly useful for rice breeders. [ABSTRACT FROM AUTHOR]

Background: An incompatible interaction between rice ( Oryza sativa) and the Asian rice gall midge (AGM, Orseolia oryzae Wood-Mason), that is usually manifested through a hypersensitive response (HR), represents an intricate relationship between the resistant host and its avirulent pest. We investigated changes in the transcriptome and metabolome of the host ( indica rice variety: RP2068-18-3-5, RP), showing HR when attacked by an avirulent gall midge biotype (GMB1), to deduce molecular and biochemical bases of such a complex interaction. Till now, such an integrated analysis of host transcriptome and metabolome has not been reported for any rice-insect interaction. Results: Transcript and metabolic profiling data revealed more than 7000 differentially expressed genes and 80 differentially accumulated metabolites, respectively, in the resistant host. Microarray data revealed deregulation of carbon (C) and nitrogen (N) metabolism causing a C/N shift; up-regulation of tetrapyrrole synthesis and down-regulation of chlorophyll synthesis and photosynthesis. Integrated results revealed that genes involved in lipid peroxidation (LPO) were up-regulated and a marker metabolite for LPO (azelaic acid) accumulated during HR. This coincided with a greater accumulation of GABA (neurotransmitter and an insect antifeedant) at the feeding site. Validation of microarray results by semi-quantitative RT-PCR revealed temporal variation in gene expression profiles. Conclusions: The study revealed extensive reprogramming of the transcriptome and metabolome of RP upon GMB1 infestation leading to an HR that was induced by the generation and release of reactive oxygen species i.e. singlet oxygen and resulted in LPO-mediated cell death. RP thus used HR as a means to limit nutrient supply to the feeding maggots and simultaneously accumulated GABA, strategies that could have led to maggot mortality. The integrated results of transcript and metabolic profiling, for the first time, provided insights into an HR+ type of resistance in rice against gall midge. [ABSTRACT FROM AUTHOR]

Gall midges are insects specialized in maneuvering plant growth, metabolic and defense pathways for their benefit. The Asian rice gall midge and rice share such an intimate relationship that there is a constant battle for survival by either partner. Diverse responses by the rice host against the midge include necrotic hypersensitive resistance reaction, non-hypersensitive resistance reaction and gall-forming compatible interaction. Genetic studies have revealed that major R (resistance) genes confer resistance to gall midge in rice. Eleven gall midge R genes have been characterized so far in different rice varieties in India. In addition, no single R gene confers resistance against all the seven biotypes of the Asian rice gall midge, and none of the biotypes is virulent against all the resistance genes. Further, the interaction of the plant resistance gene with the insect avirulence gene is on a gene-for-gene basis. Our recent investigations involving suppressive subtraction hybridization cDNA libraries, microarray analyses, gene expression assays and metabolic profiling have revealed several molecular mechanisms, metabolite markers and pathways that are induced, down-regulated or altered in the rice host during incompatible or compatible interactions with the pest. This is also true for some of the pathways studied in the gall midge. Next generation sequencing technology, gene expression studies and conventional screening of gall midge cDNA libraries highlighted molecular approaches adopted by the insect to feed, survive and reproduce. This constant struggle by the midge to overcome the host defenses and the host to resist the pest has provided us with an opportunity to observe this battle for survival at the molecular level. [ABSTRACT FROM AUTHOR]

Background: The Asian rice gall midge (Orseolia oryzae) is a destructive insect pest of rice. Gall midge infestation in rice triggers either compatible or incompatible interactions leading to survival or mortality of the feeding maggots, respectively. In incompatible interactions, generation of plant allelochemicals/defense molecules and/or inability of the maggots to continue feeding on the host initiate(s) apoptosis within the maggots. Unraveling these molecular events, triggered within the maggots as a response to feeding on resistant hosts, will enable us to obtain a better understanding of host resistance. The present study points towards the likely involvement of a defender against apoptotic cell death gene (DAD1) in the insect in response to the host defense. Results: The cDNA coding for the DAD1 orthologue in the rice gall midge (OoDAD1) consisted of 339 nucleotides with one intron of 85 bp and two exons of 208 and 131 nucleotides. The deduced amino acid sequence of OoDAD1 showed a high degree of homology (94.6 %) with DAD1 orthologue from the Hessian fly (Mayetiola destructor) --a major dipteran pest of wheat. Southern hybridization analysis indicated that OoDAD1 was present as a single copy in the genomes of the Asian rice gall midge biotypes (GMB) 1, 4 and 4 M. In the interactions involving GMB4 with Jaya (susceptible rice host) the expression level of OoDAD1 in feeding maggots gradually increased to 3-fold at 96hai (hours after infestation) and peaked to 3.5-fold at 96hai when compared to that at 24 hai. In contrast, expression in maggots feeding on RP2068 (resistant host) showed a steep increase of more than 8-fold at 24hai and this level was sustained at 48, 72 and 96hai when compared with the level in maggots feeding on Jaya at 24hai. Recombinant OoDAD1, expressed in E. coli cells, when injected into rice seedlings induced a hypersensitive response (HR) in the resistant rice host, RP2068, but not in the susceptible rice variety, Jaya. Conclusions: The results indicate that the expression of OoDAD1 is triggered in the feeding maggots probably due to the host resistance response and therefore, is likely an important molecule in the initial stages of the interaction between the midge and its rice host. [ABSTRACT FROM AUTHOR]

The complete mitochondrial genome of the Asian rice gall midge, Orseolia oryzae (Diptera; Cecidomyiidae) was sequenced, annotated and analysed in the present study. The circular genome is 15,286 bp with 13 protein-coding genes, 22 tRNAs and 2 ribosomal RNA genes, and a 578 bp non-coding control region. All protein coding genes used conventional start codons and terminated with a complete stop codon. The genome presented many unusual features: (1) rearrangement in the order of tRNAs as well as protein coding genes; (2) truncation and unusual secondary structures of tRNAs; (3) presence of two different repeat elements in separate non-coding regions; (4) presence of one pseudo-tRNA gene; (5) inversion of the rRNA genes; (6) higher percentage of non-coding regions when compared with other insect mitogenomes. Rearrangements of the tRNAs and protein coding genes are explained on the basis of tandem duplication and random loss model and why intramitochondrial recombination is a better model for explaining rearrangements in the O. oryzae mitochondrial genome is discussed. Furthermore, we evaluated the number of iterations of the tandem repeat elements found in the mitogenome. This led to the identification of genetic markers capable of differentiating rice gall midge biotypes and the two Orseolia species investigated. [ABSTRACT FROM AUTHOR]

The Asian rice gall midge ( Orseolia oryzae Wood-Mason) is a serious pest of rice that causes huge loss in yield. While feeding inside the susceptible host, maggots secrete substances that facilitate the formation of a hollow tube-like structure called gall and prevent panicle formation. The present investigation was carried out to get an account of biochemical changes occurring in the rice plant upon gall midge feeding. Metabolic profiling of host tissues from three rice varieties, namely, TN1, Kavya, and RP2068, exposed to gall midge biotype 1 (GMB1), was carried out using gas chromatography mass spectrometry (GC-MS). TN1 and GMB1 represented compatible interaction, while Kavya and GMB1 as well as RP2068 and GMB1 represented incompatible interactions. The current study identified several metabolites that could be grouped as resistance, susceptibility, infestation, and host features based on their relative abundance. These may be regarded as biomarkers for insect-plant interaction in general and rice-gall midge interaction in particular. [ABSTRACT FROM AUTHOR]

Landrace rice in Thailand consists of managed populations grown under traditional and long-standing agricultural practices. These populations evolve both in response to environmental conditions within the local agro-ecosystem and in response to human activities. Single landraces are grown across varying environments and recently have experienced temporal changes in local environments due to climate change. Here we assess the interplay between natural selection in a changing climate and human-mediated selection on the population genetic structure of Muey Nawng, a local landrace of Thai rice. Genetic diversity and population structure of landrace rice were assessed by a STRUCTURE analysis of 20 microsatellite loci. The first exon-intron junction of the waxy gene was sequenced to determine genotypes for glutinous or non-glutinous grain starch. Muey Nawng rice is genetically variable and is structured based on starch grain types and the level of resistance to gall midge pest. A strong positive correlation was found between genetic diversity and the percentage of gall midge infestation. Variation in the waxy locus is correlated with starch quality; selection for non-glutinous rice appears to involve additional genes. The dynamics of genetic diversity within Muey Nawng rice depends on three factors: (a) a genetic bottleneck caused by strong selection associated with gall midge infestation, (b) selection by local farmers for starch quality and (c) variation introduced by farmer practices for cultivation and seed exchange. These results, when taken in total, document the ability of landrace rice to quickly evolve in response to both natural and human-mediated selection. [ABSTRACT FROM AUTHOR]

Abstract: The Asian rice gall midge, Orseolia oryzae (Diptera: Cecidomyiidae), is the third most destructive insect pest of rice (Oryza sativa L.). Till date, 11 gall midge resistance gene loci have been characterized in different rice varieties. To elucidate molecular basis of incompatible (hypersensitive response plus [HR+] type) and compatible rice-gall midge interactions, two suppressive subtraction hybridization cDNA libraries were constructed. These were enriched for differentially expressed transcripts after gall midge infestation in two rice varieties (resistant Suraksha and susceptible TN1). In total, 2784 ESTs were generated and sequenced from the two libraries, of which 1536 were from the resistant Suraksha and 1248 were from the susceptible TN1. Majority (80%) of the ESTs was non-redundant sequences with known functions and was classified into three principal gene ontology (GO) categories and 12 groups. Upregulation of NBS-LRR, Cytochrome P450, heat shock proteins, phenylalanine ammonia lyase and OsPR10α genes from the Suraksha library, as revealed by real-time PCR, indicated that R gene mediated, salicylic acid related defense pathway is likely to be involved in gall midge resistance. Present study suggested that resistance in Suraksha against gall midge is similar in nature to the resistance observed in plants against pathogens. However, in TN1, genes related to primary metabolism and redox were induced abundantly. Results suggested that genes encoding translationally controlled tumor protein and NAC domain proteins are likely to be involved in the gall midge susceptibility. [Copyright &y& Elsevier]

Abstract: Resistance to rice gall midge in rice germplasm 91-1A2 was identified and genetically analyzed. F1s of rice population were derived from 91-1A2 which crossed with rice materials Jinggui, TN1, W1263 (Gm1), IET2911 (Gm2), BG404-1 (gm3), OB677 (Gm4), ARC5984 (Gm5) and Duokang 1 (Gm6) as a male parent. The resistance of all parental lines and F1, BC1F1 and F2 populations to rice gall midge was identified. The results showed that 91-1A2 and all F1s were resistant to Chinese rice gall midge biotype IV. The segregation ratio of resistant plants to susceptible ones in BC1F1 and F2 were accorded with 1:3 and 9:7 rules by X2 test, suggesting that the resistance of 91-1A2 to Chinese rice gall midge biotype IV was controlled by two dominant genes which were new resistance genes, non-allelic to the known rice gall midge resistance genes. [Copyright &y& Elsevier]

The Asian rice gall midge, Orseolia oryzae, is a major dipteran pest of rice, with many known biotypes. The present investigation was initiated to understand the molecular mechanisms of infestation for developing novel integrated pest management strategies. We isolated and characterized a gene, nucleoside diphosphate kinase ( OoNDPK), from the rice gall midge, encoding a protein with 169 amino acid residues and with a secretory signal sequence - an observation that assumes significance as salivary gland secretions have been implicated to play a major role in insect−plant interactions. Furthermore, up-regulation (> 18 folds) of OoNDPK was observed in the salivary glands of maggots feeding on susceptible host in contrast to those feeding on resistant host. Phylogenetic analysis revealed similarity of OoNDPK with its dipteran orthologues. 3 DLigandSite analysis, of the predicted OoNDPK and its orthologues, revealed phenylalanine and tyrosine residues to be specifically present in NDPK proteins from the plant feeders. Results suggest secretion of OoNDPK into the host plant and its probable involvement in gall midge−rice interaction. Using the coleoptile cell elongation assay, we demonstrated that the recombinant OoNDPK is capable of causing elongation of rice coleoptile cells. Additionally, heterologous expression of OoNDPK in Escherichia coli increased the tolerance of these cells to salt ( NaCl; up to 1 mM), hinting at the involvement of this gene in abiotic stress response as well. [ABSTRACT FROM AUTHOR]

Host plant resistance is the preferred management strategy for Asian rice gall midge ( Orseolia oryzae), a serious pest in many rice-growing countries. Identification of simple sequence repeat (SSR) markers that are tightly linked to pest resistance genes can accelerate development of gene pyramids for durable/multiple resistance. Based on conventional and molecular allelism tests, we report herein that rice genotype Aganni possesses Gm8 gene, conferring hypersensitive independent (HR- type) resistance to gall midge biotypes GMB1, GMB2, GMB3, GMB4, and GMB4M. The gene Gm8 was mapped to chromosome 8 within a 400-kbp region, and the SSR markers RM22685 and RM22709 flank the gene closely. Using these closely linked flanking markers, nine other gall midge-resistant genotypes were identified as carrying the same gene Gm8. Through marker-assisted selection, Gm8 has been introgressed into an elite bacterial blight-resistant cultivar, Improved Samba-Mahsuri (IS). [ABSTRACT FROM AUTHOR]

Several diagrams related to rice gall midge maggots are presented which explain the topics including visualization of the transcripts involved in aminoacyl-tranfer RNA biosynthesis pathway, transcripts involved in oxidative phosphorylation pathway and Venn diagram representing genes present in it.

The Asian rice gall midge (Orseolia oryzae) is a major pest responsible for immense loss in rice productivity. Currently, very little knowledge exists with regard to this insect at the molecular level. The present study was initiated with the aim of developing molecular resources as well as identifying alterations at the transcriptome level in the gall midge maggots that are in a compatible (SH) or in an incompatible interaction (RH) with their rice host. Roche 454 pyrosequencing strategy was used to develop both transcriptomics and genomics resources that led to the identification of 79,028 and 85,395 EST sequences from gall midge biotype 4 (GMB4) maggots feeding on a susceptible and resistant rice variety, TN1 (SH) and Suraksha (RH), respectively. Comparative transcriptome analysis of the maggots in SH and RH revealed over-representation of transcripts from proteolysis and protein phosphorylation in maggots from RH. In contrast, over-representation of transcripts for translation, regulation of transcription and transcripts involved in electron transport chain were observed in maggots from SH. This investigation, besides unveiling various mechanisms underlying insect-plant interactions, will also lead to a better understanding of strategies adopted by insects in general, and the Asian rice gall midge in particular, to overcome host defense. [ABSTRACT FROM AUTHOR]

The Asian rice gall midge, Orseolia oryzae, is a fast evolving, damaging pest of rice. Understanding the underlying molecular mechanism of interaction between the gall midge and rice will help in devising strategies to control and manage the pest. The present study aims to identify rice-responsive genes in the gall midge that aid pest survival. The abundance of transcripts coding for enzymes related to glycosylation, in a cDNA library prepared from maggots of the rice gall midge feeding on susceptible hosts, indicated their probable involvement in the gall midge-rice interaction. Hence, a full-length transcript for a gamma subunit of the oligosaccharyl transferase gene ( OoOST) from the gall midge was cloned and characterized. It has 72% similarity to its orthologue cloned from Aedes aegypti. Tissue-specific analysis of the expression of OoOST revealed an increase (> sevenfold) in the transcripts of the gene in the salivary glands of maggots in susceptible plants when compared with the transcript level in the salivary glands of maggots feeding on resistant hosts. Using quantitative PCR, performed on different developmental stages of the maggots in two susceptible and two resistant hosts, we observed similar expression patterns (i.e. overexpression in the compatible interaction). These results indicate the involvement of OoOST in maggot survival and establishment in the susceptible host. In order to identify polymorphism in the gene, OoOST was cloned from three gall midge biotypes GMB1, GMB4 and GMB4M. [ABSTRACT FROM AUTHOR]

The Asian rice gall midge, Orseolia oryzae (Wood-Mason), is a serious pest of rice. Investigations into the gall midge-rice interaction will unveil the underlying molecular mechanisms which, in turn, can be used as a tool to assist in developing suitable integrated pest management strategies. The insect gut is known to be involved in various physiological and biological processes including digestion, detoxification and interaction with the host. We have cloned and identified two genes, OoprotI and OoprotII, homologous to serine proteases with the conserved His87, Asp136 and Ser241 residues. OoProtI shared 52.26% identity with mosquito-type trypsin from Hessian fly whereas OoProtII showed 52.49% identity to complement component activated C1s from the Hessian fly. Quantitative real time PCR analysis revealed that both the genes were significantly upregulated in larvae feeding on resistant cultivar than in those feeding on susceptible cultivar. These results provide an opportunity to understand the gut physiology of the insect under compatible or incompatible interactions with the host. Phylogenetic analysis grouped these genes in the clade containing proteases of phytophagous insects away from hematophagous insects. [ABSTRACT FROM AUTHOR]

Microsatellite loci were isolated from the genomic DNA of the Asian rice gall midge, Orseolia oryzae (Wood-Mason) using a hybridization capture approach. A total of 90 non-redundant primer pairs, representing unique loci, were designed. These simple sequence repeat (SSR) markers represented di (72%), tri (15.3%), and complex repeats (12.7%). Three biotypes of gall midge (20 individuals for each biotype) were screened using these SSRs. The results revealed that 15 loci were hyper variable and showed polymorphism among different biotypes of this pest. The number of alleles ranged from two to 11 and expected heterozygosity was above 0.5. Inheritance studies with three markers (observed to be polymorphic between sexes) revealed sex linked inheritance of two SSRs (Oosat55 and Oosat59) and autosomal inheritance of one marker (Oosat43). These markers will prove to be a useful tool to devise strategies for integrated pest management and in the study of biotype evolution in this important rice pest. [ABSTRACT FROM AUTHOR]

A sequence encoding putative pathogenesis-related protein OsPR10α (GenBank accession no. GQ487633) was identified from suppression subtractive hybridization cDNA library of rice cultivar Suraksha, after infestation with the Asian rice gall midge (Orseolia oryzae) involving incompatible interaction with hypersensitive reaction (HR). Full-length cloning (RACE) and homology search proved its identity as root-specific OsPR10α (RsOsPR10α). The expression of RsOsPR10α was analysed at different time intervals to understand its role in the resistance mechanism in rice against the pest. Real-time PCR detected significant upregulation of the gene, 40.4 and 23.5-fold at 24 and 120 h after infestation respectively, with the avirulent gall midge biotype 1 (GMB1) in Suraksha. Such upregulation was not observed after infestation with the virulent biotype (GMB4M). Significantly, RsOsPR10α expression was not upregulated in the cultivar Kavya, exhibiting resistance without HR against GMB1 or in the susceptible cultivar TN1 with either of the biotypes. Similar expression analysis of two other PR genes, OsPR1α and OsPR2, did not reveal significant changes in the transcript levels. Further, sequence analysis of full-length RsOsPR10α and its promoter region from the three cultivars revealed mutations in Kavya at four putative cis-acting elements, viz. PAL A box binding site, GT-1 binding site, bZIP binding site and GATA binding site. These results suggest that RsOsPR10α plays an important role in the events leading to gall midge resistance with HR. They also demonstrate that rice-gall midge interactions share similarities with the reported rice-pathogen interactions rather than with in rice-insect interactions. To the best of our knowledge, there are no reports implicating PR10α gene in plant resistance against insects. [ABSTRACT FROM AUTHOR]

This study assessed the effects of genotype variations in two cultivated rice species: Oryza glaberrima and Oryza sativa on the biology and galling characteristics of the African rice gall midge (AfRGM), Orseolia oryzivora Harris and Gagné. The study was conducted in the screen house at ambient temperature (27 ± 3°C), 70 ± 5% relative humidity and 12:12 h photoperiod. Shoot galling, the most visible response of rice genotypes to attack by the insect, was greatly suppressed, being only 0.7 cm long in the O. glaberrima genotypes compared to 34 cm in the O. sativa species. Larval mortality (70-88%) in the O. glaberrima genotypes was significantly higher at the first instar compared to O. sativa. Gall setting was confirmed to be an irredeemable tiller loss. Even in the susceptible O. sativa genotypes, where many larvae may colonize a tiller, only one survived to the second instar. Resistant and susceptible rice genotypes had significantly different effects on the development and reproductive anatomy of the AfRGM. The female reproductive anatomy which consists of two ovaries, each with a potential complement of 192 eggs was affected by interspecific variation in rice genotypes causing reduced potential fecundity (32); morphological distortion, 60% reduction of egg size of F1 emergent in O. glaberrima compared to emergent from the susceptible O. sativa genotypes. [ABSTRACT FROM AUTHOR]

Gall midge is the third most destructive insect pests of rice after stem borers and planthoppers. Host plant resistance has been recognized as the most effective and economic, means for gall midge management. With the characterization of a new gall midge biotype (GMB) 4M, unique feature of gall midge resistance in the breeding line CR57-MR1523 was highlighted. Multi-location evaluation of F3 families derived from the cross TN1 × CR57-MR1523 against different gall midge biotypes helped to identify a new dominant gene conferring resistance against GMB4. This gene has been designated as Gm11t. Though CR57-MR1523 has been extensively used in breeding gall midge resistant rice varieties like Suraksha, neither the genetics of resistance nor chromosomal location of the resistance gene(s) is known. In the present study we have tagged and mapped the new gall midge resistance gene, Gm11t, on chromosome 12, using SSR markers. To map the gene locus, 466 F10 generation Recurrent Inbred Lines (RILs), from the cross of TN1 × CR57-MR1523 were used. Of the 471 SSR markers spread across the rice genome, 56 markers showed polymorphism and were used to screen a subset of the mapping population consisting of 10 resistant (R) and 10 susceptible (S) F10 RILs. Six SSR markers, RM28706, RM235, RM17, RM28784, RM28574 and RM28564 on chromosome 12 were initially found to be associated with resistance and susceptibility. Based on the linkage analysis in selected 158 RILs, we were able to map the locus between two flanking SSR markers, RM28574 and RM28706, on chromosome 12 within 4.4 and 3.8 cM, respectively. Further, two NILs with 99% genetic similarity, were identified from the RILs which differed in gall midge resistance. The tightly linked flanking SSR markers will facilitate marker-assisted gene pyramiding and map-based cloning of the resistant gene. NILs would be valuable materials for functional analysis of the identified candidate gene. [ABSTRACT FROM AUTHOR]

The African rice gall midge (AfRGM) Orseolia oryzivora Harris and Gagné is an important insect pest of rice in Nigeria. Studies were conducted at Ogidiga (forest zone) and Edozhigi (southern Guinea savanna) in Nigeria, under rainfed lowland conditions during the 2006 and 2007 rainy seasons, on the population dynamics of AfRGM adults using light trap and random sampling of % tiller infestation (plant damage due to AfRGM) and % parasitism by Platygaster diplosisae Risbec and Aprostocetus procerae Risbec (parasitized larvae and pupae and parasitoid species present in dissected tillers). The results obtained showed that AfRGM populations were relatively low in June and July – the beginning of the 2006 and 2007 rainy seasons, respectively – and increased abruptly from September, reaching a peak in October at both locations. The increase was attributed to the rapid build-up of the pest populations at both locations. There were strong positive correlations between adult populations from light-trap catches and % tiller infestation, and between % tiller infestation and parasitism. The peak period of parasitism by P. diplosisae and A. procerae occurred towards the end of the rainy season in October, coinciding with high level of % tiller infestation. It is concluded that conservation of the parasitoids early in the cropping season (i.e. to improve their synchronization with the host) could become an effective management strategy against AfRGM. [ABSTRACT FROM PUBLISHER]

Platygaster diplosisae and Aprostocetus procerae attack both the African rice gall midge (AfRGM), Orseolia oryzivora, and Orseolia bonzii, a closely related gall midge that feeds on Paspalum scrobiculatum. Recent research has shown that managing this weed at the edge of rice fields offers African farmers, low-cost non-chemical control of AfRGM. [ABSTRACT FROM AUTHOR]

Rice production is of great importance to food security in Nigeria. The African rice gall midge (AfRGM), Orseolia oryzivora Harris & Gagné, is a major pest of lowland rice in Nigeria and many other Africa countries. Current management efforts are directed at integrating host plant resistance with biological agents. The type and abundance of some phytochemicals are known to affect resistance in host plants, so in this study we measured rice culm hardness, rice culm stickiness and the type and quantity of phytosterols in rice cultivars, and investigated the effects of these factors on resistance to the AfRGM. The study was conducted at 24 ± 2°C, 60 ± 5% relative humidity, and a 12 h light : 12 h dark photoperiod. Three rice cultivars were studied: one Oryza glaberimma cultivar, Tog 7442 (resistant), and two O. sativa cultivars, Cisadane (tolerant) and ITA 306 (susceptible). We found no significant differences in culm hardness and stickiness among the cultivars tested. Using gas chromatography (flame ionization detection) analysis, we identified four major phytosterols: campesterol, 24-methylenecholesterol, stigmasterol and β-sitosterol. 24-Methylenecholesterol was the most abundant sterol in the resistant O. glaberimma cultivar (79.20 μg), whereas β-sitosterol was most abundant in the two susceptible O. sativa cultivars (Cisadane, 71.27 μg; ITA 306, 66.37 μg). The comparatively high concentration of 24-methylenecholesterol in this cultivar of O . glaberimma may be an indicator of resistance to AfRGM. [ABSTRACT FROM AUTHOR]

Against the background of conflicting reports of variable sex ratio distribution in different populations of the African rice gall midge (AfRGM), Orseolia oryzivora Harris and Gagne, the number and sex ratios of F1 adult progeny produced per female from wild and screen house populations were investigated in the screen house at 27 ± 3°C, 60–70% relative humidity and 12 : 12 h (light : dark) photoperiod. Results indicated the occurrence of a single sex-biased ratio in all the F1 adult progeny produced per female of this pest. Regardless of the source, whether from wild or screen house population, each mated female AfRGM produced a full complement of either sex only but never both. The difference between the number of eggs laid and F1 adult progeny that emerged per female from wild and screen house populations was not significant (P > 0.05), indicating consistency in the occurrence of this phenomenon among AfRGM populations. The reason for this could not be ascertained in this study but AfRGM eggs must be fertilized for development and eclosion to occur. No F2 adults emerged when a cohort of emergents from the same female were allowed to re-infest susceptible seedlings, indicating absence of parthenogenesis. [ABSTRACT FROM AUTHOR]

Transencapsidation of the Rice gall dwarf virus (RGDV) inner core by the Rice dwarf virus (RDV) outer capsid P8 protein was examined in vitro and in planta. When RGDV core particles were incubated with an extract from RDV P8-transgenic rice leaf tissue, RDV P8 encapsidated the RGDV core particles to form double-shelled virus-like particles in vitro. In contrast, when RDV P8-transgenic rice plants were inoculated with RGDV, progeny RGDV particles contained RGDV P8 but RDV P8 was not detectable in the virions. No significant differences were found in acquisition by the vector insects and subsequent transmission rates between RGDV infecting nontransgenic rice plants and those infecting RDV P8-transgenic rice plants. These results indicate that mechanisms of and/or requirements for interactions between P8 and the inner core particles of phytoreoviruses differ between in vitro and in planta. [ABSTRACT FROM AUTHOR]

Host-plant resistance is the preferred strategy for management of Asian rice gall midge (Orseolia oryzae), a serious pest in many rice-growing countries. The deployment of molecular markers linked to gall midge resistance genes in breeding programmes can accelerate the development of resistant cultivars. In the present study, we have tagged and mapped a dominant gall midge resistance gene,Gm1, from theOryza sativacv. W1263 on chromosome 9, using SSR markers. A progeny-tested F2 mapping population derived from the cross W1263/TN1 was used for analysis. To map the gene locus, initially a subset of the F2 mapping population consisting of 20 homozygous resistant and susceptible lines each was screened with 63 parental polymorphic SSR markers. The SSR markers RM316, RM444 and RM219, located on chromosome 9, are linked toGm1at genetic distances of 8.0, 4.9 and 5.9 cM, respectively, and flank the gene locus. Further, gene/marker order was also determined. The utility of the co-segregating SSR markers was tested in a backcross population derived from the cross Swarna/W1263//Swarna, and allelic profiles of these markers were analysed in a set of donor rice genotypes possessingGm1and in a few gall midge-susceptible, elite rice varieties. [ABSTRACT FROM AUTHOR]

Using amplified fragment length polymorphisms (AFLPs) and random amplified polymorphic DNAs (RAPDs), we have tagged and mappedGm8, a gene conferring resistance to the rice gall midge (Orseolia oryzae), a major insect pest of rice, onto rice chromosome 8. Using AFLPs, two fragments, AR257 and AS168, were identified that were linked to the resistant and susceptible phenotypes, respectively. Another resistant phenotype-specific marker, AP19587, was also identified using RAPDs. SCAR primers based on the sequence of the fragments AR257 and AS168 failed to reveal polymorphism between the resistant and the susceptible parents. However, PCR using primers based on the regions flanking AR257 revealed polymorphism that was phenotype-specific. In contrast, PCR carried out using primers flanking the susceptible phenotype-associated fragment AS168 produced a monomorphic fragment. Restriction digestion of these monomorphic fragments revealed polymorphism between the susceptible and resistant parents. Nucleotide BLAST searches revealed that the three fragments show strong homology to rice PAC and BAC clones that formed a contig representing the short arm of chromosome 8. PCR amplification using the above-mentioned primers on a larger population, derived from a cross between twoindicarice varieties, Jhitpiti (resistant parent) and TN1 (susceptible parent), showed that there is a tight linkage between the markers and theGm8locus. These markers, therefore, have potential for use in marker-aided selection and pyramiding ofGm8along with other previously tagged gall midge resistance genes [Gm2,Gm4(t), andGm7]. [ABSTRACT FROM AUTHOR]

Considerable diversity was observed in the reactions of 20 rice genotypes to African rice gall midge (AfRGM) at five locations in four countries in West Africa. Of 14 Oryza sativa lines studied, TOS14519 had the lowest mean plant damage; TOG7106 had the lowest mean damage among five O. glaberrima lines in the trials. The only O. sativa × O. glaberrima progeny in the study, WAB450-I-B-P-181-22-1- HB, showed mean damage comparable with the resistant check NHTA 8. The levels of resistance shown by the glaberrimas were better than those of the sativas. Eight genotypes could be described as possessing both stable and acceptable levels of resistance to the pest. TOG7106 and TOS14519 were rated highly stable and highly resistant. The high genotype × environment interaction in the reactions of the rice lines to AfRGM could not be attributed to agroclimatic or crop management factors, leaving us to suggest the possible existence of different biotypes of AfRGM in West Africa. [ABSTRACT FROM AUTHOR]

In an effort to study genome diversity within and between the Indian biotypes of the Asian rice gall midge, Orseolia oryzae, a major insect pest of rice, we made use of mariner transposable element integration site polymorphisms. Using degenerate primers, the design of which is based on mariner sequences, we amplified a ca. 450 bp mariner sequence from the rice gall midge. The mariner sequence showed homology with that of a mariner element isolated from the Hessian fly, Mayetiola destructor, a major dipteran pest of wheat. Southern hybridization, using this mariner fragment as a probe, revealed that the mariner elements are moderately to highly repetitive in the rice gall midge genome. Based on the sequence information of this 450-bp PCR-amplified fragment, outward-directed primers were designed and used in an inverse PCR (iPCR) to amplify the DNA flanking the conserved regions. To study the regions flanking the mariner integration sites, we employed a novel PCR-based approach: a combination of sequence specific amplification polymorphism (SSAP) and amplified fragment length polymorphism (AFLP). The outward-directed mariner-specific primer was used in combination with adapter-specific primers with 1–3 selective nucleotides at their 3' ends. The amplification products were resolved on an agarose gel, Southern-transferred onto nylon membranes, and probed with the iPCR fragment. Results revealed biotype-specific polymorphisms in the regions flanking the mariner integration sites, suggesting that mariner elements in the rice gall midge may be fixed in a biotype-specific manner. The implications of these results are discussed in the context of biotype differentiation.Key words: DNA fingerprinting, inverse PCR (iPCR), Oryza sativa, rice pest, transposon.Afin d'étudier la diversité génomique parmi et entre les biotypes indiens de la mouche des galles du riz (Orseolia oryzae), un ravageur important du riz, les auteurs ont exploité le polymorphisme au niveau des sites d'intégration des éléments transposables mariner. Des amorces dégénérées, inspirées de la séquence d'éléments mariner, ont permis d'amplifier une séquence d'environ 450 pb d'un élément mariner chez la mouche des galles du riz. Cette séquence mariner montrait de l'homologie avec l'élément mariner identifié chez la mouche de Hesse, Mayetiola destructor, un important diptère ravageur chez le blé. Une hybridation Southern, réalisée avec le fragment mariner comme sonde, a révélé qu'il s'agit d'une séquence modérément à fortement répétée au sein du génome de la mouche des galles du riz. En s'appuyant sur la séquence de l'amplicon de 450 pb, des amorces dirigées vers l'extérieur de l'élément ont été synthétisées et employées en PCR inverse (iPCR) afin d'amplifier les séquences d'ADN adjacentes aux régions conservées. Afin d'étudier les séquences adjacentes aux sites d'intégration des éléments mariner, les auteurs ont employé une nouvelle technique PCR, une combinaison des techniques SSAP (« sequence specific amplification polymorphism ») et AFLP (« amplified fragment length polymorphism »). L'amorce spécifique de l'élément mariner, et dirigée vers l'extérieur de celui-ci, a été utilisée en combinaison avec des amorces spécifiques à des adaptateurs et munies de 1–3 bases sélectives à leur extrémité 3'. Les amplicons ont été séparés sur gel d'agarose, transférés sur des membranes de nylon et hybridés avec le fragment d'iPCR. Les résultats ont révélé des polymorphismes spécifiques de biotypes dans les régions adjacentes aux sites d'intégration des élémets mariner. Cela suggérerait que les éléments mariner chez la mouche des galles du riz pourraient être fixés au sein des divers biotypes. Les implications de ces résultats sont discutées dans le contexte de la différenciation des biotypes.Mots clés : empreintes génétiques, PCR inverse (iPCR), Oryza sativa, ravageurs du riz, transposon.[Traduit par la Rédaction] [ABSTRACT FROM AUTHOR]

Describes the method for screening rice germplasm for resistance to the African rice gall midge (AfRGM) in Nigeria. Role of partial resistance on the management of AfRGM; Development of resistant varieties; Percentage rate of tiller infestation levels.

AbstractUsing a PCR-based method, we detected Wolbachia in the Asian rice gall midge. Furthermore, results showed that all females across all biotypes are infected with Wolbachia. However, all male flies are not infected and show different infection frequency in different biotypes. We have also identified three mitotypes, in the rice gall midge, based on DraI restriction pattern of a portion of the 12S rRNA gene that was PCR amplified using primers specific to this gene. All the females and infected male flies had type 1 mtDNA while uninfected males showed only type 2 or 3 mtDNA. Inheritance patterns of mtDNA revealed the existence of a correlation between mtDNA type and Wolbachia infection in the Asian rice gall midge. Evidence for paternal inheritance of mtDNA in Wolbachia-free gall midge is also presented. [ABSTRACT FROM AUTHOR]

The Asian rice gall midge (Orseolia oryzae (Wood-Mason)) is a major insect pest in rice cultivation. Therefore, development of a reliable system for the timely prediction of this insect would be a valuable tool in pest management. In this study, occurring between the period from 2013–2018: (i) gall midge populations were recorded using a light trap with an incandescent bulb, and (ii) climatological parameters (air temperature, air relative humidity, rainfall and insulations) were measured at four intensive rice cropping agroecosystems that are endemic for gall midge incidence in India. In addition, weekly cumulative trapped gall midge populations and weekly averages of climatological data were subjected to count time series (Integer-valued Generalized Autoregressive Conditional Heteroscedastic—INGARCH) and machine learning (Artificial Neural Network—ANN, and Support Vector Regression—SVR) models. The empirical results revealed that the ANN with exogenous variable (ANNX) model outperformed INGRACH with exogenous variable (INGRCHX) and SVR with exogenous variable (SVRX) models in the prediction of gall midge populations in both training and testing data sets. Moreover, the Diebold–Mariano (DM) test confirmed the significant superiority of the ANNX model over INGARCHX and SVRX models in modeling and predicting rice gall midge populations. Utilizing the presented efficient early warning system based on a robust statistical model to predict the build-up of gall midge population could greatly contribute to the design and implementation of both proactive and more sustainable site-specific pest management strategies to avoid significant rice yield losses. [ABSTRACT FROM AUTHOR]

Examines the differentiation of Asian rice gall midge for Orseolia oryzae on biotypes by sequence of amplified regions. Development of polymerase chain reaction (PCR); Isolation of PCR products; Amplification of DNA fragments as diagnostic markers to identify biotypes of gall midge.

The active substance, cecidogen secreted from the saliva of gall midge larva and the larval feeding on the meristematic tissue of terminal and auxiliary shoot apices in rice plant are responsible for gall formation (silver-shoot) in rice. Gall midge occurs in many of the rice growing areas and causes considerable yield loss even up to 70% in kharif crop. Many resistant varieties are being cultivated but the occurrence of biotypic variation of the insect limits their extensive use. Integrating chemical and genetic resistance appeared feasible to check the pest. Seasonal occurrence, host variation, resistance mechanism, biological, cultural and chemical control methods are reviewed and future lines of research on this important pest have also been discussed. [ABSTRACT FROM AUTHOR]

The Asian rice gall midge, Orseolia oryzae Wood Mason (Diptera: Cecidomyiidae), is a major pest of rice in several South and South East Asian countries. The maggots feed internally on the growing tips of the tillers and transform them into tubular galls, onion leaf-like structures called `silver shoots' resulting into severe yield loss to the rice crop. We studied the mode of inheritance and allelic relationships of the resistance genes involved in resistant donor Line 9, a sib of a susceptible cultivar `Madhuri'. The segregation behaviour of F1, F2 and F3 populations of the cross between Line 9 and susceptible cultivar MW10 confirmed the presence of a single dominant gene for resistance. Tests of allelism with all the known genes giving resistance to this population indicated that Line 9 possessed a new gene which was designated Gm 9. [ABSTRACT FROM AUTHOR]

Farmer-managed trials of the rice variety Cisadane were undertaken at 47 rainfed lowland sites around Abakaliki, south-east Nigeria, a major outbreak area of the African rice gall midge (ARGM). At each site a plot of Cisadane was grown alongside a control plot of the participating farmer's usual variety. On average the Cisadane yielded 26% higher than the controls but ARGM infestation levels on it were only slightly lower, suggesting thatithad greater tolerance to the pest butlittle antixenotic or antibiotic resistance. For all of 14 evaluation criteria, most participating farmers rated Cisadane as better than their control varieties. It appears to be a useful component for an ARGM management strategy. Regression analyses of yield on alternative variables for ARGM infestation derived from data recorded at 3, 7 or 11 w.a.t. (weeks after transplanting) showed that the log-transformed percent tiller infestation at 7 w.a.t. was the best predictor of yield. Variables for site topography, water level, fertilizer use in the nursery, and plant spacing also had significant partial regression coefficients. Excluding plots with tiller infestation levels above 30%, the relationship between yield and infestation was approximately linear and suggested a yield loss of 2.9% per 1% increase in infestation. [ABSTRACT FROM AUTHOR]