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A special‐purpose Committee on DNA Sequences as Types was established at the XIX International Botanical Congress (IBC) in Shenzhen, China, in 2017, with a mandate to report to the XX IBC in Madrid in 2024 with recommendations on a preferred course of action with respect to potential amendments of the International Code of Nomenclature for algae, fungi, and plants to allow DNA sequences as types. This is the first in an expected series of papers from the Special‐purpose Committee on this issue. We set out the background to the establishment of the Committee, explore key issues around typification that are pertinent to the question of DNA sequences as types, enumerate pros and cons of allowing DNA sequences as types, and foreshadow options for future discussion and potential recommendations.

Eremophila R.Br. comprises at least 238 species endemic to Australia, with many more having not yet been formally described. Three putative new taxa, namely, E. sp. Hamersley Range (K. Walker KW 136), E. sp. Calvert Range (A. A. Burbidge 738) and E. sp. Rudall River (P. G. Wilson 10512), were segregated from a broadly defined E. tietkensii F.Muell. & Tate by J. Hurter at the Western Australian Herbarium in 2012. Both E. sp. Hamersley Range and E. sp. Rudall River are listed as being of conservation concern in Western Australia, the former occurring in the Pilbara region in areas of prospective interest for mining development. We sought to determine whether these phrase-named entities should be formally described as new species, using multivariate analyses of morphometric and molecular data derived from specimens in the Western Australia Herbarium. Eremophila sp. Rudall River could not be adequately separated from E. tietkensii by either morphological or molecular data, and is here included within that species. By contrast, E. sp. Hamersley Range and E. sp. Calvert Range are clearly morphologically and genetically distinct. We thus describe them here as the new species E. naaykensii A.L.Curtis & K.R.Thiele and E. hurteri A.L.Curtis & K.R.Thiele. The recognition of these taxa will help inform their conservation prioritisation and subsequent management.

PREMISE OF THE STUDY Continental-scale disjunctions and associated drivers is a core research interest in biogeographic studies. Here, we selected a species-rich Australian plant genus (Calytrix; Myrtaceae) as a case study to investigate these patterns. The endemic Australian starflower genus has a disjunct distribution across the mesic fringes of the continent and is largely absent from the arid centre. METHODS We used high-throughput sequencing to generate unprecedented resolution and near complete species-level nuclear and plastid phylogenies for Calytrix. BioGeoBEARS and biogeographic stochastic mapping were used to infer ancestral areas, the relative contributions of vicariance and dispersal events, and directionality of dispersal. KEY RESULTS Present-day disjunctions in Calytrix are explained by a combination of scenarios: (1) retreat of multiple lineages from the continental centre to the more mesic fringes as Australia became progressively more arid, with subsequent extinction in the centre, and also (2) origination of ancestral lineages in southwestern Australia (SWA) for species-rich clades. The SWA biodiversity hotspot is a major diversification centre and the most common source area of dispersals, with multiple lineages originating in SWA and subsequently spreading to the adjacent arid Eremaean region. CONCLUSIONS Our results suggest major extinction, as a result of cooling and drying of the Australian continent in the Eocene-Miocene, shaped the present-day biogeography of Calytrix. We hypothesise that this peripheral vicariance pattern, which is similar to the African Rand flora, may explain the disjunctions of many other Australian plant groups. Further studies with densely sampled phylogenies are required to test this hypothesis. This article is protected by copyright. All rights reserved.

Species lists are widely used in legislation and regulation to manage and conserve biodiversity. In this paper, we explore the issues caused by the lack of an adequately governed and universally accepted list of the world’s species. These include lack of quality control, duplicated effort, conflicts of interest, lack of currency, and confusion in the scientific use of taxonomic information. If species lists are to fulfill their role efficiently, then the governance systems underlying their creation must keep pace. Fortunately, modernization of species list governance is now possible as a result of advances in biodiversity informatics and two decades of experience working to create the backbone of a global species list.

Despite the important role that species names play in multiple fields, there is no globally complete list of known and described species. This lack is a result simultaneously of the complexity of planetary biodiversity, the long history of naming species in publications from all over the world, the small number of taxonomists working on many important groups, the rapid and dynamic change in knowledge for a few well-studied groups, and the limited incentives for researchers to curate such lists. Recent papers have proposed that a more formal governance mechanism is needed to assist with the translation of taxonomic knowledge to user communities. The recommendation is for the taxonomic community to assist user groups by maintaining reviewed lists that reflect as far as possible consensus among practising taxonomists and incorporating new insights and understanding as these become widely accepted within the relevant taxonomic community. The Catalogue of Life (COL) is the most significant international partnership working to deliver a list of all species by engaging a broad network of taxonomists and databases to contribute expert-curated lists for different taxonomic groups. COL, which included 1,908,823 species as of May 2021, has great experience with developing such a list across all taxonomic groups and has been modernising its processes and tools since 2017 to reflect best practice in management of large digital information assets. This paper explores the alignment between the current state and directions of COL and the initiative to improve the governance of species lists.

In the present study, we tested the chronological and geographic origins of the mostly arid Australian Ptilotus (Amaranthaceae) and its close relatives (i.e. the ‘aervoids’) by reconstructing a dated phylogeny with near-comprehensive sampling for Ptilotus and estimating ancestral geographic ranges. We investigated climatic niche evolution within Ptilotus and identified likely climatic origins and subsequent niche shifts by reconstructing ancestral states of climatic variables on the phylogeny, which was visualised using a phyloecospace approach. Geospatial analyses were employed to identify probable diversification hotspots within Australia. We inferred that the aervoids originated in Oligocene Africa–Asia and that Ptilotus arrived in northern Australia by dispersal in the Early Miocene. Subsequent diversification of Ptilotus was rapid, giving rise to all major clades in the western Eremaean by the time of an aridification pulse in the Middle Miocene. Climatic niche shifts from the arid Eremaean into monsoonal northern and temperate southern Australia are apparent for multiple independent species groups. Our analyses support the hypothesis that a pre-adaptation to aridity and early arrival in an aridifying Australia were integral to the success of Ptilotus, and that the Eremaean has been a source of biodiversity in the genus and for independent radiations into neighbouring climatic zones.

Background Distal lower extremity reconstruction can be challenging in terms of flap design. Bulky flaps result in limited mobility accompanied with the need of customized footwear. Raising the ALT-flap in a superficial fascial plane (thin ALT-flap) can be beneficial. This study evaluates thin ALT-flaps for lower distal extremity reconstruction. Methods In a retrospective study, patients that underwent microvascular extremity reconstruction at the level of the ankle and dorsal foot at the University of Freiburg from 2008–2018 were reviewed. Results 95 patients could be included in the study (35 perforator flaps, 8 fascia flaps and 54 muscle flaps).Among the perforator flaps, 21 ALT-flaps were elevated conventionally and 14 in the superficial fascial plane (thin ALT-flap). Among the conventional ALT-flaps, there was one flap loss (5%) and one successful revision (5%). 5(24%) flaps received secondary thinning. 57%(n = 12) were able to wear conventional footwear. There were 2(15%) successful revisions of thin ALT-flaps. 100% of thin ALT-flaps survived and 85%(n = 11) of the patients wore ordinary footwear after defect coverage.Among fascial flaps, 50%(n = 4) had to be revised with 2(25%) complete and 1 (13%) partial flap loss. All patients achieved mobility in ordinary shoes (n = 8).In muscle flaps, there were 7(13%) revisions and 5(9%) flap losses. 5(9%) flaps received secondary thinning. Only 33%(n = 18) were mobile in ordinary footwear. Conclusion The thin ALT-flap is a save one-stage evolution for lower distal extremity reconstruction with a favorable flap survival rate. Compared with conventional ALT-flaps it might be beneficial in reducing the need for expensive custom fitted shoes and secondary thinning procedures.

Governance is the act of governing or organizing, that is a system of rules, norms, or shared strategies to guide or regulate the actions of the governed. Since the initial development of Linnaean taxonomy, a diversity of approaches have been adopted for critical taxonomic decisions, introducing pluralism to taxonomic principles and resulting in disagreements about the development of species lists. These disagreements are in part a product of the fragmented governance structure that has developed for the creation of taxonomic lists. To address these challenges and achieve the goal of a single, accepted list of life on Earth, a new governance structure for the development of taxonomic lists is needed. Here, we introduce three high-level categories of governance structure—fragmentation, monocentric governance, and polycentric governance—which differ in the way decision-making power is distributed and coordinated. We then show the problems caused by the fragmented governance structure currently in place for the development of taxonomic lists and consider the potential for a new approach grounded in either monocentric or polycentric governance. Both monocentric and polycentric approaches have the potential to address the problems inherent in the existing fragmented system. Ultimately, the best governance system for taxonomic lists will be the one that the taxonomic community is prepared to accept.

Taxonomy—the delimitation, naming, classification and documentation of species and other taxa—is an often-misunderstood discipline. Complex and at times contested, taxonomy occupies a sometimes discomforting intermediate position on a continuum from descriptive to hypothetico-deductive science. Two aspects of taxonomy that are striking to many observers and users are the degree to which taxonomists often disagree, and the degree of taxonomic revisionism (the replacement of one taxonomic classification with another, exemplified by the phrase ‘taxonomists are always changing the names of things’). Disagreements between taxonomists do not usually indicate taxonomic confusion or chaos, but rather often represent valid disagreements over the best, most effective and most meaningful way to interpret, describe and classify one of the most complex systems that scientists seek to describe and characterise—the patterns of variation of life on Earth. One way to partially manage disagreements among taxonomists is to develop a mechanism to synthesise the flux of taxonomic activity into agreed, broadly accepted, authoritative and scientifically robust global lists of the world’s species and other taxa. A sound understanding of some aspects of the nature of taxonomy is needed to appreciate the opportunities, complexities and limitations of the development and maintenance of such lists.

Direct tests of gene function have historically been performed in a limited number of model organisms. The CRISPR/Cas system is species-agnostic, offering the ability to manipulate genes in a range of models, enabling insights into evolution, development, and physiology. Astatotilapia burtoni, a cichlid fish from the rivers and shoreline around Lake Tanganyika, has been extensively studied in the laboratory to understand evolution and the neural control of behavior. Here we develop protocols for the creation of CRISPR-edited cichlids and create a broadly useful mutant line. By manipulating the Tyrosinase gene, which is necessary for eumelanin pigment production, we describe a fast and reliable approach to quantify and optimize gene editing efficiency. Tyrosinase mutants also remove a major obstruction to imaging, enabling visualization of subdermal structures and fluorophores in situ. These protocols will facilitate broad application of CRISPR/Cas9 to studies of cichlids as well as other non-traditional model aquatic species.

Objective Racial disparities among women with cervical cancer have been reported but are understudied in Caribbean immigrants. The objective of this study is to describe the disparities in clinical presentation and outcomes between Caribbean-born (CB) and US-born (USB) women with cervical cancer by race and nativity. Methods An analysis of the Florida Cancer Data Service (FCDS), the statewide cancer registry, was performed to identify women diagnosed with invasive cervical cancer between 1981 and 2016. Women were classified as USB White or Black and CB White or Black. Clinical data were abstracted. Analyses were done using chi square, ANOVA, Kaplan-Meier and Cox proportional hazards models, with significance set at P < .05. Results 14 932 women were included in the analysis. USB Black women had the lowest mean age at diagnosis, while CB Black women were diagnosed at later stages of disease. USB White women and CB White women had better OS (median OS 70.4 and 71.5 months, respectively) than USB Black and CB Black women (median OS 42.4 and 63.8 months, respectively) ( P < .0001). In multivariable analysis, relative to USB Black women, CB Blacks (HR .67, CI .54–.83), and CB White (HR .66, CI .55–.79) had better odds of OS. White race among USB women was not significantly associated with improved survival ( P = .087). Conclusion Race alone is not a determinant of cancer mortality in women with cervical cancer. Understanding the impact of nativity on cancer outcomes is crucial to improve health outcomes.

The Miocene convergence of the Sunda shelf, Sahul shelf and Wallacea facilitated the exchange of previously isolated floras across the Sunda–Sahul Convergence Zone (SSCZ). The SSCZ is a hotspot of biogeographical research; however, phytogeographical patterns across the region remain poorly understood. We conducted multivariate analysis on a comprehensive species checklist of SSCZ vascular plants to quantify the extent of exchange, characterize phytogeographical patterns and investigate their abiotic drivers. We found that Lydekker’s and Wallace’s Lines are not reflected in floristic composition at any taxonomic level, with 46% of genera distributed across these biogeographical lines. In contrast, environment is significantly correlated with floristic composition, with annual rainfall and seasonality being the strongest correlates. Mainland Asia, Borneo, the Philippines, New Guinea and Australia were major routes of exchange throughout the Cenozoic, possibly because these areas have been persistent landmasses throughout the entire period of convergence. We conclude that Sunda–Sahul floristic exchange has substantially influenced the assembly of the regional flora and that modern phytogeographical patterns have been influenced more by environmental variables and available landmass (i.e. establishment conditions) than by putative barriers to movement such as Wallace’s and Lydekker’s Lines (i.e. vagility).

Animals benefit from knowing if and how they are moving. Across the animal kingdom, sensory information in the form of optic flow over the visual field is used to estimate self-motion. However, different species exhibit strong spatial biases in how they use optic flow. Here, we show computationally that noisy natural environments favor visual systems that extract spatially biased samples of optic flow when estimating self-motion. The performance associated with these biases, however, depends on interactions between the environment and the animal's brain and behavior. Using the larval zebrafish as a model, we recorded natural optic flow associated with swimming trajectories in the animal's habitat with an omnidirectional camera mounted on a mechanical arm. An analysis of these flow fields suggests that lateral regions of the lower visual field are most informative about swimming speed. This pattern is consistent with the recent findings that zebrafish optomotor responses are preferentially driven by optic flow in the lateral lower visual field, which we extend with behavioral results from a high-resolution spherical arena. Spatial biases in optic-flow sampling are likely pervasive because they are an effective strategy for determining self-motion in noisy natural environments.

Abstract —Data scored for cladistic analyses may be quantitative or qualitative, continuous or discrete, and show overlapping or non-overlapping values between taxa. Quantitative and qualitative are modes of expression of data, while continuous or discrete refer to properties of the set of numbers that express the data; both these pairs of terms have been confused with overlapping and non-overlapping. The degree of overlap of values between taxa is often used to filter characters in cladistic analyses: if a minimum amount of overlap is exceeded, or a minimum amount of disjunction not reached, characters are rejected as "not cladistic". However, this rests on a confusion between features of taxa and features of individual organisms (attributes). Cladistic characters are features of taxa, and comprise frequency distributions of attribute values over individuals of a taxon. Cladistic characters logically cannot overlap, although taxa may have overlapping attribute values. Thus, a priori rejection of characters that have overlapping attribute values is non-sensical. Such data may still be rejected from consideration for cladistic analysis if it could be demonstrated that they contain little recoverable phylogenetic signal. Few published analyses have empirically tested this. An analysis of overlapping morphometric data from three series of Banksia suggests that, at least in these cases, they map phylogeny almost as accurately as more conventional, qualitative morphological data. While more such tests are required, morphometric data should not be rejected a priori from cladistic analyses.

ispartof: ORGANISMS DIVERSITY & EVOLUTION vol:21 issue:4 pages:657-675 status: published

A global consensus list of the world’s species must be based on the best available taxonomic research, and its contents should not be biased towards certain political or social aims. At the same time, users of any global list must be involved or consulted in its establishment to ensure that the list meets their needs. This paper argues that while these two desiderata— independence and inclusion—might seem to be in conflict, they are in fact compatible. More precisely, it suggests the roles taxonomists and users could play in establishing and maintaining a global consensus list to make sure that this list is both inclusive and independent.

Land-use intensification is a major driver of biodiversity loss. However, understanding how different components of land use drive biodiversity loss requires the investigation of multiple trophic levels across spatial scales. Using data from 150 agricultural grasslands in central Europe, we assess the influence of multiple components of local- and landscape-level land use on more than 4,000 above- and belowground taxa, spanning 20 trophic groups. Plot-level land-use intensity is strongly and negatively associated with aboveground trophic groups, but positively or not associated with belowground trophic groups. Meanwhile, both above- and belowground trophic groups respond to landscape-level land use, but to different drivers: aboveground diversity of grasslands is promoted by diverse surrounding land-cover, while belowground diversity is positively related to a high permanent forest cover in the surrounding landscape. These results highlight a role of landscape-level land use in shaping belowground communities, and suggest that revised agroecosystem management strategies are needed to conserve whole-ecosystem biodiversity., Nature Communications, 12 (1), ISSN:2041-1723

Ptilotus macrocephalus (R.Br.) Poir. (Amaranthaceae), commonly known as a featherhead, is a widespread and common species in many parts of Australia. In the present study, we assess morphological variation in P. macrocephalus throughout its geographic range and provide evidence for the recognition of two new species, namely, P. psilorhachis T.Hammer & R.W.Davis and P. xerophilus T.Hammer & R.W.Davis. Geospatial analyses indicated that these new species are partitioned ecologically and geographically.

Viola banksii of the eastern Australian and Tasmanian sect. Erpetion produces exclusively chasmogamous flowers, unlike most other temperate taxa of Viola which additionally produce obligatory self-pollinated cleistogamous flowers. This study explored flower structure and nyctinastic flower movements (temporal flower closure), the correlation of the timing of nyctinastic movements with stigma receptivity, and self-compatibility of flowers. Petal movement in day/night cycles was documented by two cameras. Floral morphology, anther protuberance anatomy, stigma receptivity, and pollen tube growth were examined using scanning electron microscopy, fluorescent microscopy, histochemical and sectioning techniques. Diurnal petal movements that cause flowers to be open during the day and closed during the night were documented in V. banksii. Chasmogamous flower colour, fragrance, anterior petal venation, and the indurated green area at the base of the anterior petal are all likely to play roles for pollinator attraction. Unlike most other Viola species, the anther protuberances do not function as nectaries. The flowers offer pollinators no nectar reward. The short time of stigma receptivity (2–3 days) of individual flowers limits opportunities for insect visitation and cross-pollination. Night-closed flowers of V. banksii appear to facilitate self-pollination. Self-compatibility was confirmed by tracking the pollen tube growth from the stigma to the ovule in spontaneous and hand self-pollinated flowers. Over the floral phenological cycle, nyctinasty coincides in time with stigma receptivity and, hence, the ability of self-pollination. We discovered that the same chasmogamous flower of V. banksii can cross-pollinate while open during the day, but self-pollinate while closed during the night (i.e. acting as a cleistogamous-like flower). Several floral characters indicate that V. banksii exhibits a pollination deceit strategy. Such a pollination system has not been described elsewhere in Viola.

Summary Polymer injection might lead to incremental oil recovery and increase the value of an asset. Several steps must be taken to mature a polymer-injection project. The field needs to be screened for applicability of polymer injection, laboratory experiments have to be performed, and a pilot project might be required before field implementation. The decision to perform a pilot project can be dependent on a value-of-information (VOI) calculation. The VOI can be derived by performing a work flow that captures the effects of the range of geological scenarios, as well as dynamic and polymer parameters, on incremental net present value (NPV). The result of the work flow is a cumulative distribution function (CDF) of NPV linked to prior distributions of model parameters and potential observables from the polymer-injection pilot. The effect of various parameters on the CDF of the fieldwide NPV can be analyzed and in turn used to decide which measurements from the pilot have a strong sensitivity on the NPV CDF, and are thus informative. In the case shown here, the water-cut reduction in the pilot area has a strong effect on the NPV CDF of the polymer-injection field implementation. To extract maximum information, the response of the pilot for water-cut reduction needs to be optimized under uncertainty. To calculate the VOI, the expected-monetary-value (EMV) difference of a decision tree with and without the pilot can be used if the decision maker (DM) is risk neutral. However, if the DM requires hurdle values through a probability of economic success (PES), value functions (VFs) and decision weights according to the prospect theory should be used. Applying risk hurdles requires a consistent use of VFs and decision weights for calculating VOI and the probability of maturation (POM) of projects. The methodology was applied to assess the VOI for a horizontal-well pilot in the ninth Tortonian Horizon (9TH) Reservoir in Austria for a risk-averse DM. The operating parameters (polymer concentration and water injection) were chosen such that the water-cut reduction, which was the most influential parameter of the polymer pilot on the field NPV CDF, was maximized.

We present BonZeb – a suite of modular Bonsai packages which allow high-resolution zebrafish tracking with dynamic visual feedback. Bonsai is an increasingly popular software platform that is accelerating the standardization of experimental protocols within the neurosciences due to its speed, flexibility, and minimal programming overhead. BonZeb can be implemented into novel and existing Bonsai workflows for online behavioral tracking and offline tracking with batch processing. We demonstrate that BonZeb can run a variety of experimental configurations used for gaining insights into the neural mechanisms of zebrafish behavior. BonZeb supports head-fixed closed-loop and free-swimming virtual open-loop assays as well as multi-animal tracking, optogenetic stimulation, and calcium imaging during behavior. The combined performance, ease of use and versatility of BonZeb opens new experimental avenues for researchers seeking high-resolution behavioral tracking of larval zebrafish.

Postpartum anemia is common after delivery, and postpartum blood transfusion is the leading indicator of severe maternal morbidity in the United States. Although hematologic changes during the antepartum period are well understood, little is known about postpartum hematologic changes. Therefore, we investigated the hematologic changes in the postpartum period in a large, contemporary cohort.This study aimed to characterize hematologic recovery in the postpartum period and evaluate the effect of demographics, medical conditions, and pregnancy characteristics on the recovery.In a contemporary cohort of deliveries in 2019 at a single institution, the hematocrit of postpartum women before hospital discharge was compared with the hematocrit of women at the postpartum follow-up. Our population was composed of a predominantly Hispanic population at an urban, safety-net hospital. All women received a complete blood count on postpartum day 1 and a spun hematocrit at their postpartum follow-up visit in our hospital system. All women were scheduled for a routine postpartum visit 2 to 3 weeks after delivery. All deliveries of a live-born infant with available postpartum hematocrit before hospital discharge and at postpartum follow-up were included. Demographics and pregnancy characteristics, along with medical conditions, were evaluated. To evaluate an uncomplicated cohort, those with multiple gestation, preeclampsia with severe features, chronic hypertension, and diabetes mellitus were excluded in the secondary analysis. Statistical analysis included chi-square, paired Student t test, Student t test for independent groups, and analysis of variance.Of 12,456 deliveries, 9003 met the inclusion criteria. The average number of days from discharge to follow-up was 21.73±10.39 days. The average hematocrit levels were 30.77±3.61 before discharge and 38.70±3.61 at postpartum follow-up. From discharge to postpartum follow-up, the hematocrit levels increased by an average of 7.93±3.24. In the cohort without complications, the average increase in hematocrit levels was 8.19±3.09. The rise in hematocrit levels was significantly lower for those with chronic hypertension (6.9±3.6), diabetes mellitus (7.3±3.3), and preeclampsia with severe features (6.9±3.7). The severity of anemia influenced the rise in hematocrit levels in the postpartum period. In women with postpartum anemia (hematocrit30%), the rise in hematocrit levels was 9.49±2.97 in the uncomplicated cohort. Postpartum hemorrhage did not influence the rise in postpartum hematocrit levels; women receiving blood transfusion had a greater rise in hematocrit levels (9.01±3.29).Our study establishes the natural course of hematologic recovery in the postpartum period, and we found that women with asymptomatic postpartum anemia may have a hematocrit level of 37% to 39% at their postpartum follow-up approximately 3 weeks after hospital discharge. Women with preexisting and obstetrical complications experienced less hematologic recovery and adapted more slowly to postpartum physiological changes.

Aim Gondwanan biogeographic patterns include a combination of old vicariance events following the breakup of the supercontinent, and more recent long-distance dispersals across the southern landmasses. Floristic relationships between Australia and New Zealand have mostly been attributed to recent dispersal events rather than vicariance. We assessed the biogeographic history of Pomaderris (Rhamnaceae), which occurs in both Australia and New Zealand, by constructing a time-calibrated molecular phylogeny to infer (1) phylogenetic relationships and (2) the relative contributions of vicariance and dispersal events in the biogeographic history of the genus. Location Australia and New Zealand. Methods Using hybrid capture and high throughput sequencing, we generated nuclear and plastid data sets to estimate phylogenetic relationships and fossil calibrated divergence time estimates for Pomaderris. BioGeoBEARS and biogeographical stochastic mapping (BSM) were used to assess the ancestral area of the genus and the relative contributions of vicariance vs dispersal, and the directionality of dispersal events. Results Our analyses indicate that Pomaderris originated in the Oligocene and had a widespread Australian distribution. Vicariance of western and eastern Australian clades coincides with the uplift of the Nullarbor Plain c. 14 Ma, followed by subsequent in-situ and within-biome diversification with little exchange across regions. A rapid radiation of southeastern Australian taxa beginning c. 10 Ma was the source for at least six independent long-distance dispersal events to New Zealand during the Pliocene–Pleistocene. Main conclusions Our study demonstrates the importance of dispersal in explaining not only the current cross-Tasman distributions of Pomaderris, but for the New Zealand flora more broadly. The pattern of multiple independent long-distance dispersal events for Pomaderris, without significant radiation within New Zealand, is congruent with other lowland plant groups, suggesting that this biome has a different evolutionary history compared with the younger alpine flora of New Zealand, which exhibits extensive radiations often following single long distance dispersal events.

Lists of species underpin many fields of human endeavour, but there are currently no universally accepted principles for deciding which biological species should be accepted when there are alternative taxonomic treatments (and, by extension, which scientific names should be applied to those species). As improvements in information technology make it easier to communicate, access, and aggregate biodiversity information, there is a need for a framework that helps taxonomists and the users of taxonomy decide which taxa and names should be used by society whilst continuing to encourage taxonomic research that leads to new species discoveries, new knowledge of species relationships, and the refinement of existing species concepts. Here, we present 10 principles that can underpin such a governance framework, namely (i) the species list must be based on science and free from nontaxonomic considerations and interference, (ii) governance of the species list must aim for community support and use, (iii) all decisions about list composition must be transparent, (iv) the governance of validated lists of species is separate from the governance of the names of taxa, (v) governance of lists of accepted species must not constrain academic freedom, (vi) the set of criteria considered sufficient to recognise species boundaries may appropriately vary between different taxonomic groups but should be consistent when possible, (vii) a global list must balance conflicting needs for currency and stability by having archived versions, (viii) contributors need appropriate recognition, (ix) list content should be traceable, and (x) a global listing process needs both to encompass global diversity and to accommodate local knowledge of that diversity. We conclude by outlining issues that must be resolved if such a system of taxonomic list governance and a unified list of accepted scientific names generated are to be universally adopted., Currently there are no rules on compiling lists of accepted names of species, meaning that many people use a variety of competing lists, which results in confusion and inefficiencies. This Perspective article provides principles for developing global lists of species that are needed if such lists are to be accepted by both taxonomists and users of taxonomy.

Introduction: Resection of anorectal malignancies may result in extensive perineal/pelvic defects that require an interdisciplinary surgical approach involving reconstructive surgery. The myocutaneous gracilis flap (MGF) and the gluteal fold flap (GFF) are common options for defect coverage in this area. Here we report our experience with the MGF/GFF and compare the outcome regarding clinical key parameters. Methods: In a retrospective chart review, we collected data from the Department of Plastic Surgery of the University of Freiburg from December 2008-18 focusing on epidemiological, oncological, and therapy-related data including comorbidities (ASA Classification) and peri-/postoperative complications (Clavien-Dindo-System). Results: Twenty-nine patients were included with a mean follow-up of 17 months. Of the cases, 19 (65.5%) presented with recurrent disease, 21 (72.4%) received radiochemotherapy preoperatively, 2 (6.9%) received chemotherapy alone. Microscopic tumor free margins were achieved in 25 cases (86.2%). 17 patients (7 men, 10 women, rectal adenocarcinoma n = 11; anal squamous cell carcinoma n = 6; mean age 58.5 ± 10.68, mean BMI 23.1, mean ASA score 2.8) received a MGF (unilateral n = 10; bilateral n = 7). Twelve patients (7 men, 5 women, rectal adenocarcinoma n = 7; anal squamous cell carcinoma n = 4, proctodeal gland carcinoma n = 1, mean age 66.2 ± 9.2, mean BMI 23.6, mean ASA score 2.6) received coverage with a GFF (unilateral n = 4; bilateral n = 8). Mean operation time of coverage was 105 ± 9 min for unilateral and 163 ± 11 for bilateral MGFs, 70 ± 13 min for unilateral and 107 ± 14 for bilateral GFFs. Complications affected 62%. There was no significant difference in the complication rate between the MGF- and GFF-group. Complications were mainly wound healing disorders that did not extend the hospital stay. No flap loss and no complication that lead to long-lasting disability was documented (both groups). Pain-free sitting took more time in the GFF-group due to the location of the donor site. Conclusion: MG-flaps and GF-flaps prove to be reliable and robust techniques for perineal/pelvic reconstruction. Though flap elevation is significantly faster for GF-flaps, preoperative planning and intraoperative Doppler confirmation are advisable. With comparable complication rates, we suggest a decision-making based on distribution of adipose tissue for dead space obliteration, intraoperative patient positioning, and perforator vessel quality/distribution.

Background The Sunda-Sahul Convergence Zone, defined here as the area comprising Australia, New Guinea, and Southeast Asia (Indonesia to Myanmar), straddles the Sunda and Sahul continental shelves and is one of the most biogeographically famous and important regions in the world. Floristically, it is thought to harbour a large amount of the world’s diversity. Despite the importance of the area, a checklist of the flora has never before been published. Here we present the first working checklist of vascular plants for the Sunda-Sahul Convergence Zone. The list was compiled from 24 flora volumes, online databases and unpublished plot data. Taxonomic nomenclature was updated, and each species was coded into nested biogeographic regions. The list includes 60,415 species in 5,135 genera and 363 families of vascular plants. New information This is the first species-level checklist of the region and presents an updated census of the region’s floristic biodiversity. The checklist confirms that species richness of the SSCZ is comparable to that of the Neotropics, and highlights areas in need of further documentation and taxonomic work. This checklist provides a novel dataset for studying floristic ecology and evolution in this biogeographically important region of very high global biodiversity.

The diversification dynamics of the Australian temperate flora remains poorly understood. Here, we investigate whether differences in plant richness in the southwest Australian (SWA) biodiversity hotspot and southeast Australian (SEA) regions of the Australian continent can be attributed to higher net diversification, more time for species accumulation, or both. We assembled dated molecular phylogenies for the 21 most species-rich flowering plant families found across mesic temperate Australia, encompassing both SWA and SEA regions, and applied a series of diversification models to investigate responses across different groups and timescales. We show that the high richness in SWA can be attributed to a higher net rate of lineage diversification and more time for species accumulation. Different pulses of diversification were retrieved in each region. A decrease in diversification rate across major flowering plant lineages at the Eocene–Oligocene boundary ( ca 34 Ma) was witnessed in SEA but not in SWA. Our study demonstrates the importance of historical diversification pulses and differential responses to global events as drivers of present-day diversity. More broadly, we show that diversity within the SWA biodiversity hotspot is not only the result of recent radiations, but also reflects older events over the history of this planet.

Background Herbaria are valuable sources of extensive curated plant material that are now accessible to genetic studies because of advances in high-throughput, next-generation sequencing methods. As an applied assessment of large-scale recovery of plastid and ribosomal genome sequences from herbarium material for plant identification and phylogenomics, we sequenced 672 samples covering 21 families, 142 genera and 530 named and proposed named species. We explored the impact of parameters such as sample age, DNA concentration and quality, read depth and fragment length on plastid assembly error. We also tested the efficacy of DNA sequence information for identifying plant samples using 45 specimens recently collected in the Pilbara. Results Genome skimming was effective at producing genomic information at large scale. Substantial sequence information on the chloroplast genome was obtained from 96.1% of samples, and complete or near-complete sequences of the nuclear ribosomal RNA gene repeat were obtained from 93.3% of samples. We were able to extract sequences for the core DNA barcode regions rbcL and matK from 96 to 93.3% of samples, respectively. Read quality and DNA fragment length had significant effects on sequencing outcomes and error correction of reads proved essential. Assembly problems were specific to certain taxa with low GC and high repeat content (Goodenia, Scaevola, Cyperus, Bulbostylis, Fimbristylis) suggesting biological rather than technical explanations. The structure of related genomes was needed to guide the assembly of repeats that exceeded the read length. DNA-based matching proved highly effective and showed that the efficacy for species identification declined in the order cpDNA >> rDNA > matK >> rbcL. Conclusions We showed that a large-scale approach to genome sequencing using herbarium specimens produces high-quality complete cpDNA and rDNA sequences as a source of data for DNA barcoding and phylogenomics.

The successful engineering of biosynthetic pathways hinges on understanding the factors that influence acyl carrier protein (ACP) stability and function. The stability and structure of ACPs can be influenced by the presence of divalent cations, but how this relates to primary sequence remains poorly understood. As part of a course-based undergraduate research experience, we investigated the thermostability of type II polyketide synthase (PKS) ACPs. We observed an approximate 40 °C range in the thermostability amongst the 14 ACPs studied, as well as an increase in stability (5 – 26 °C) of the ACPs in the presence of divalent cations. Distribution of charges in the helix II-loop-helix III region was found to impact the enthalpy of denaturation. Taken together, our results reveal clues as to how the sequence of type II PKS ACPs relates to their structural stability, information that can be used to study how ACP sequence relates to function.

Summary Determining the remaining spatial oil-saturation distribution or current reservoir-pressure distribution for a mature (water, solvent, CO2) flood is a cornerstone of reservoir management for improving sweep and selecting infill-well locations. Decisions of these types are typically supported by reservoir flow simulation models that have been calibrated to historical injection/production data. In this paper, we present a novel-pattern material-balance (PatMB) approach to estimating remaining fluids in place as an alternative to flow simulation. First, we use the historical injection/production volumes to solve for streamlines and streamline-derived pattern metrics such as well-allocation factors and injector/producer-pair reservoir pore volumes (PVs). Then, we apply material balance on these volumes over time to estimate the remaining oil in place (ROIP) and pressures at the end of history. Resembling reservoir simulation, the method considers changing well patterns through time, requires a 3D static geological model, and yields 3D saturation distributions of oil, water, and gas. However, unlike reservoir simulation, because historical injected and produced voidage terms are honored, calibration is only possible through the 3D distribution of PV and fluids initially in place. We present results for the Berrymoor-pattern waterflood and show that the ROIP distribution is a strong function of the original-oil-in-place (OOIP) distribution, well locations, and historical oil, gas, and water production/injection volumes. For this case, the ROIP distribution is almost insensitive to interwell permeability distributions, suggesting that the primary focus when estimating ROIP with the PatMB approach is to ensure a good estimate of OOIP, major flow units, and the correct injection/production data. We also compare our method to reservoir flow simulation for a large water/hydrocarbon miscible flood (HCMF), and we observed that the ROIP maps compare well, with both methods highlighting similar areas for potential infill locations. However, the remaining-gas-in-place maps differed with PatMB, showing a more diffused distribution than flow simulation of the gas. We attribute the difference to the fact that PatMB does not account for transport effects such as separation of the phases caused by density differences.