745 results on '"R. Roche"'
Search Results
2. Ammonia sources and sinks in an intensively managed grassland canopy
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M. David, B. Loubet, P. Cellier, M. Mattsson, J. K. Schjoerring, E. Nemitz, R. Roche, M. Riedo, and M. A. Sutton
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Ecology ,QH540-549.5 ,Life ,QH501-531 ,Geology ,QE1-996.5 - Abstract
Grasslands represent canopies with a complex structure where sources and sinks of ammonia (NH3) may coexist at the plant level. Moreover, management practices such as mowing, hay production and grazing may change the composition of the sward and hence the source-sink relationship at the canopy level as well as the interaction with the atmosphere. There is therefore a need to understand the exchange of ammonia between grasslands and the atmosphere better, especially regarding the location and magnitude of sources and sinks. Fluxes of atmospheric NH3 within a grassland canopy were assessed in the field and under controlled conditions using a dynamic chamber technique (cuvette). These cuvette measurements were combined with extraction techniques to estimate the ammonium (NH4+) concentration and the pH of a given part of the plant or soil, leading to an estimated ammonia compensation point (Cp). The combination of the cuvette and the extraction techniques was used to identify the potential sources and sinks of NH3 within the different compartments of the grassland: the soil, the litter or senescent "litter leaves", and the functioning "green leaves". A set of six field experiments and six laboratory experiments were performed in which the different compartments were either added or removed from the cuvettes. The results show that the cuvette measurements agree with the extraction technique in ranking the strength of compartment sources. It suggests that in the studied grassland the green leaves were mostly a sink for NH3 with a compensation point around 0.1–0.4 μg m−3 and an NH3 flux of 6 to 7 ng m−2 s−1. Cutting of the grass did not increase the NH3 fluxes of the green leaves. The litter was found to be the largest source of NH3 in the canopy, with a Cp of up to 1000 μg m−3 NH3 and an NH3 flux up to 90 ng m−2 s−1. The litter was found to be a much smaller NH3 source when dried (Cp=160 μg m−3 and FNH3=35 ng m−2 s−1 NH3). Moreover emissions from the litter were found to vary with the relative humidity of the air. The soil was a strong source of NH3 in the period immediately after cutting (Cp=320 μg m−3 and FNH3=60 ng m−2 s−1), which was nevertheless always smaller than the litter source. The soil NH3 emissions lasted, however, for less than one day, and were not observed with sieved soil. They could not be solely explained by xylem sap flow extruding NH4+. These results indicate that future research on grassland-ammonia relationships should focus on the post-mowing period and the role of litter in interaction with meteorological conditions.
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- 2009
3. Dynamics of ammonia exchange with cut grassland: strategy and implementation of the GRAMINAE Integrated Experiment
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M. A. Sutton, E. Nemitz, M. R. Theobald, C. Milford, J. R. Dorsey, M. W. Gallagher, A. Hensen, P. A. C. Jongejan, J. W. Erisman, M. Mattsson, J. K. Schjoerring, P. Cellier, B. Loubet, R. Roche, A. Neftel, B. Hermann, S. K. Jones, B. E. Lehman, L. Horvath, T. Weidinger, K. Rajkai, J. Burkhardt, F. J. Löpmeier, and U. Daemmgen
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Ecology ,QH540-549.5 ,Life ,QH501-531 ,Geology ,QE1-996.5 - Abstract
A major international experiment on ammonia (NH3) biosphere-atmosphere exchange was conducted over intensively managed grassland at Braunschweig, Germany. The experimental strategy was developed to allow an integrated analysis of different features of NH3 exchange including: a) quantification of nearby emissions and advection effects, b) estimation of net NH3 fluxes with the canopy by a range of micrometeorological measurements, c) analysis of the sources and sinks of NH3 within the plant canopy, including soils and bioassay measurements, d) comparison of the effects of grassland management options on NH3 fluxes and e) assessment of the interactions of NH3 fluxes with aerosol exchange processes. Additional technical objectives included the inter-comparison of different estimates of sensible and latent heat fluxes, as well as continuous-gradient and Relaxed Eddy Accumulation (REA) systems for NH3 fluxes. The prior analysis established the spatial and temporal design of the experiment, allowing significant synergy between these objectives. The measurements were made at 7 measurement locations, thereby quantifying horizontal and vertical profiles, and covered three phases: a) tall grass canopy prior to cutting (7 days), b) short grass after cutting (7 days) and c) re-growing sward following fertilization with ammonium nitrate (10 days). The sequential management treatments allowed comparison of sources-sinks, advection and aerosol interactions under a wide range of NH3 fluxes. This paper describes the experimental strategy and reports the grassland management history, soils, environmental conditions and air chemistry during the experiment, finally summarizing how the results are coordinated in the accompanying series of papers.
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- 2009
4. De la biología al injerto de tejido adiposo: cómo mejorar el lipoinjerto
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A.C. Girard, S. Mirbeau, M. Atlan, F. Festy, R. Roche, and L. Hoareau
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Injerto de grasa autóloga ,Lidocaina ,Centrifugacion ,Células madre derivadas de tejido adiposo ,Medicine ,Surgery ,RD1-811 - Abstract
A pesar de que el uso del injerto de grasa ha ganado popularidad, no hay consenso sobre la mejor manera de manejar el tejido adiposo. Los protocolos difieren y los resultados son a menudo variables. Diversos factores influyen en la calidad de la grasa inyectada, entre los que encontramos las moléculas tóxicas provenientes de la infiltración, procedimiento previo a la liposucción. En este trabajo, hemos confirmado el efecto nocivo de los anestésicos sobre las células madre derivadas del tejido adiposo, determinando el efecto del lavado y la centrifugación en el tejido graso con el fin de proponer un protocolo simple y optimizado para mejorar la supervivencia del injerto. Evaluamos la citotoxicidad de la lidocaína sobre las células madre derivadas de tejido adiposo (ADSC) mediante ensayo de LDH. Sometimos el tejido adiposo conjunto a varios tipos de centrifugación (de 1 segundo a 10 minutos y desde 0 g a 1800 g), y el volumen de líquido y el aceite liberado se midió inmediatamente después de la centrifugación. Tras la determinación de las condiciones óptimas para la manipulación de tejidos (400 g/1 minuto), inyectamos el tejido adiposo de liposucción sin o con lidocaína en ratones inmunodeficientes. Un mes después de la inyección, evaluamos la calidad de los injertos mediante histología, y en comparación con los injertos obtenidos a partir de un protocolo convencional: una simple sedimentación. La lidocaína ejerce un efecto citotóxico sobre las ADSC, y este efecto depende del tiempo de incubación y de las concentraciones. En cuanto al tejido adiposo, una centrifugación intensa (900 g, 1800 g) es perjudicial en comparación con una centrifugación suave (100 g, 400 g). Además, las secciones histológicas de los injertos de tejido adiposo no centrifugados mostraron la presencia de grandes vacuolas de aceite mientras que los injertos resultantes de lavado con protocolo de centrifugación suave (400g/1minuto) no lo hacen. En conclusión, creemos que se debe emplear un manejo adecuado del tejido adiposo, incluyendo lavado y centrifugación, con el fin de eliminar el líquido de infiltración y las moléculas tóxicas asociadas que son perjudiciales para los injertos. Sin embargo, no recomendamos una centrifugación intensa ya que conduce muy rápidamente a una mayor muerte celular. Por lo tanto, una centrifugación suave (400 g/1 minuto) precedida de lavados, parece ser el protocolo más apropiado para la reinyección del tejido adiposo.
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- 2013
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5. Molecular characterisation of Pinus sylvestris (L.) in Ireland at the western limit of the species distribution
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Samuel Belton, Philippe Cubry, Jenni R. Roche, and Colin T. Kelleher
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Ecology ,QH540-549.5 ,Evolution ,QH359-425 - Abstract
Abstract Background Scots pine (Pinus sylvestris L.) underwent significant population declines across much of northwest Europe during the mid-to-late Holocene and was thought to have become extirpated in Ireland from about 400 AD. However, most extant populations are plantations reintroduced from Scotland. Others are naturalised therefrom and one in Western Ireland is a putative relict. In this paper, Scots pine in Ireland are genetically described for the first time. Results Using two mitochondrial (mtDNA) loci, eight chloroplast (cpSSR) and 18 nuclear (nSSR) loci, the genetic composition and diversity of 19 Irish Scots pine populations is described and compared to other European populations. All trees sampled in Ireland were fixed for mitotype a, which is the most common across northwest Europe. By contrast, cpSSR (H CP = 0.967) and nSSR (H e = 0.540) variation was high, and comparable with estimates for other regions across the species range. Differentiation at both sets of loci were similarly low (cpSSR F ST = 0.019; nSSR F ST = 0.018), but populations from continental Europe were significantly differentiated from all Irish populations based on nSSR variation. Conclusions All Irish Scots pine are likely part of a common Irish-Scottish gene pool which diverged from continental Scots pine following post-glacial recolonisation. A high genetic diversity and an absence of evidence of inbreeding suggests the regional decline of Scots pine did not critically reduce allelic variation. The post-glacial relationship between Irish and Scottish pine is discussed, and a suggestion from recent palaeoecological work that reintroduced Scots pine be managed as a native species is now further supported by genetic data.
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- 2024
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6. Human-centered visualization technologies for patient monitoring are the future: a narrative review
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Greta Gasciauskaite, Justyna Lunkiewicz, Tadzio R. Roche, Donat R. Spahn, Christoph B. Nöthiger, and David W. Tscholl
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Visualization technologies ,Situation awareness ,User-centered design ,Patient monitoring ,Intensive care unit ,Perioperative medicine ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Medical technology innovation has improved patient monitoring in perioperative and intensive care medicine and continuous improvement in the technology is now a central focus in this field. Because data density increases with the number of parameters captured by patient-monitoring devices, its interpretation has become more challenging. Therefore, it is necessary to support clinicians in managing information overload while improving their awareness and understanding about the patient’s health status. Patient monitoring has almost exclusively operated on the single-sensor–single-indicator principle—a technology-centered way of presenting data in which specific parameters are measured and displayed individually as separate numbers and waves. An alternative is user-centered medical visualization technology, which integrates multiple pieces of information (e.g., vital signs), derived from multiple sensors into a single indicator—an avatar-based visualization—that is a meaningful representation of the real-world situation. Data are presented as changing shapes, colors, and animation frequencies, which can be perceived, integrated, and interpreted much more efficiently than other formats (e.g., numbers). The beneficial effects of these technologies have been confirmed in computer-based simulation studies; visualization technologies improved clinicians’ situation awareness by helping them effectively perceive and verbalize the underlying medical issue, while improving diagnostic confidence and reducing workload. This review presents an overview of the scientific results and the evidence for the validity of these technologies.
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- 2023
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7. User Perceptions of Visual Clot in a High-Fidelity Simulation Study: Mixed Qualitative-Quantitative Study
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Greta Gasciauskaite, Clara Castellucci, Amos Malorgio, Alexandra D Budowski, Giovanna Schweiger, Michaela Kolbe, Daniel Fries, Bastian Grande, Christoph B Nöthiger, Donat R Spahn, Tadzio R Roche, David W Tscholl, and Samira Akbas
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Medical technology ,R855-855.5 - Abstract
BackgroundViscoelastic hemostatic assays, such as rotational thromboelastometry (ROTEM) or thromboelastography, enable prompt diagnosis and accelerate targeted treatment. However, the complex interpretation of the results remains challenging. Visual Clot—a situation awareness-based visualization technology—was developed to assist clinicians in interpreting viscoelastic tests. ObjectiveFollowing a previous high-fidelity simulation study, we analyzed users’ perceptions of the technology, to identify its strengths and limitations from clinicians’ perspectives. MethodsThis is a mixed qualitative-quantitative study consisting of interviews and a survey. After solving coagulation scenarios using Visual Clot in high-fidelity simulations, we interviewed anesthesia personnel about the perceived advantages and disadvantages of the new tool. We used a template approach to identify dominant themes in interview responses. From these themes, we defined 5 statements, which were then rated on Likert scales in a questionnaire. ResultsWe interviewed 77 participants and 23 completed the survey. We identified 9 frequently mentioned topics by analyzing the interview responses. The most common themes were “positive design features,” “intuitive and easy to learn,” and “lack of a quantitative component.” In the survey, 21 respondents agreed that Visual Clot is easy to learn and 16 respondents stated that a combination of Visual Clot and ROTEM would help them manage complex hemostatic situations. ConclusionsA group of anesthesia care providers found Visual Clot well-designed, intuitive, and easy to learn. Participants highlighted its usefulness in emergencies, especially for clinicians inexperienced in coagulation management. However, the lack of quantitative information is an area for improvement.
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- 2024
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8. The Visual Patient Avatar ICU Facilitates Information Transfer of Written Information by Visualization: A Multicenter Comparative Eye-Tracking Study
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Julie Viautour, Lukas Naegeli, Julia Braun, Lisa Bergauer, Tadzio R. Roche, David W. Tscholl, and Samira Akbas
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Visual-Patient-avatar ICU ,eye tracking ,visual perception ,situation awareness ,avatar-based monitoring ,Medicine (General) ,R5-920 - Abstract
Patient monitoring is crucial in critical care medicine. Perceiving and interpreting multiple vital signs requires a high workload that can lead to decreased situation awareness and consequently inattentional blindness, defined as impaired perception of unexpectedly changing data. To facilitate information transfer, we developed and validated the Visual-Patient avatar. Generated by numerical data, the animation displays the status of vital signs and patient installations according to a user-centered design to improve situation awareness. As a surrogate parameter for information transfer in patient monitoring, we recorded visual attention using eye-tracking data. In this computer-based study, we compared the correlation of visually perceived and correctly interpreted vital signs between a Visual-Patient-avatar ICU and conventional patient monitoring. A total of 50 recruited study participants (25 nurses, 25 physicians) from five European study centers completed five randomized scenarios in both modalities. Using a stationary eye tracker as the primary endpoint, we recorded how long different areas of interest of the two monitoring modalities were viewed. In addition, we tested for a possible association between the length of time an area of interest was viewed and the correctness of the corresponding question. With the conventional monitor, participants looked at the installation site the longest (median 2.13–2.51 s). With the Visual-Patient-avatar ICU, gaze distribution was balanced; no area of interest was viewed for particularly long. For both modalities, the longer an area was viewed, the more likely the associated question was answered incorrectly (OR 0.97, 95% CI 0.95–0.99, p = 0.008). The Visual-Patient-avatar ICU facilitates and improves information transfer through its visualizations, especially with written information. The longer an area of interest was viewed, the more likely the associated question was answered incorrectly.
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- 2023
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9. Using Visual Patient to Show Vital Sign Predictions, a Computer-Based Mixed Quantitative and Qualitative Simulation Study
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Amos Malorgio, David Henckert, Giovanna Schweiger, Julia Braun, Kai Zacharowski, Florian J. Raimann, Florian Piekarski, Patrick Meybohm, Sebastian Hottenrott, Corinna Froehlich, Donat R. Spahn, Christoph B. Noethiger, David W. Tscholl, and Tadzio R. Roche
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avatar ,machine learning ,monitoring ,predictive models ,Visual Patient ,vital sign predictions ,Medicine (General) ,R5-920 - Abstract
Background: Machine learning can analyze vast amounts of data and make predictions for events in the future. Our group created machine learning models for vital sign predictions. To transport the information of these predictions without numbers and numerical values and make them easily usable for human caregivers, we aimed to integrate them into the Philips Visual-Patient-avatar, an avatar-based visualization of patient monitoring. Methods: We conducted a computer-based simulation study with 70 participants in 3 European university hospitals. We validated the vital sign prediction visualizations by testing their identification by anesthesiologists and intensivists. Each prediction visualization consisted of a condition (e.g., low blood pressure) and an urgency (a visual indication of the timespan in which the condition is expected to occur). To obtain qualitative user feedback, we also conducted standardized interviews and derived statements that participants later rated in an online survey. Results: The mixed logistic regression model showed 77.9% (95% CI 73.2–82.0%) correct identification of prediction visualizations (i.e., condition and urgency both correctly identified) and 93.8% (95% CI 93.7–93.8%) for conditions only (i.e., without considering urgencies). A total of 49 out of 70 participants completed the online survey. The online survey participants agreed that the prediction visualizations were fun to use (32/49, 65.3%), and that they could imagine working with them in the future (30/49, 61.2%). They also agreed that identifying the urgencies was difficult (32/49, 65.3%). Conclusions: This study found that care providers correctly identified >90% of the conditions (i.e., without considering urgencies). The accuracy of identification decreased when considering urgencies in addition to conditions. Therefore, in future development of the technology, we will focus on either only displaying conditions (without urgencies) or improving the visualizations of urgency to enhance usability for human users.
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- 2023
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10. User Perceptions of Visual Blood: An International Mixed Methods Study on Novel Blood Gas Analysis Visualization
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Greta Gasciauskaite, Justyna Lunkiewicz, Giovanna Schweiger, Alexandra D. Budowski, David Henckert, Tadzio R. Roche, Lisa Bergauer, Patrick Meybohm, Sebastian Hottenrott, Kai Zacharowski, Florian Jürgen Raimann, Eva Rivas, Manuel López-Baamonde, Michael Thomas Ganter, Tanja Schmidt, Christoph B. Nöthiger, David W. Tscholl, and Samira Akbas
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blood gas analysis ,point-of-care diagnostic ,qualitative research ,situation awareness ,user-centered design ,visualization ,Medicine (General) ,R5-920 - Abstract
Blood gas analysis plays a central role in modern medicine. Advances in technology have expanded the range of available parameters and increased the complexity of their interpretation. By applying user-centered design principles, it is possible to reduce the cognitive load associated with interpreting blood gas analysis. In this international, multicenter study, we explored anesthesiologists’ perspectives on Visual Blood, a novel visualization technique for presenting blood gas analysis results. We conducted interviews with participants following two computer-based simulation studies, the first utilizing virtual reality (VR) (50 participants) and the second without VR (70 participants). Employing the template approach, we identified key themes in the interview responses and formulated six statements, which were rated using Likert scales from 1 (strongly disagree) to 5 (strongly agree) in an online questionnaire. The most frequently mentioned theme was the positive usability features of Visual Blood. The online survey revealed that participants found Visual Blood to be an intuitive method for interpreting blood gas analysis (median 4, interquartile range (IQR) 4-4, p < 0.001). Participants noted that minimal training was required to effectively learn how to interpret Visual Blood (median 4, IQR 4-4, p < 0.001). However, adjustments are necessary to reduce visual overload (median 4, IQR 2-4, p < 0.001). Overall, Visual Blood received a favorable response. The strengths and weaknesses derived from these data will help optimize future versions of Visual Blood to improve the presentation of blood gas analysis results.
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- 2023
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11. Attitudes of Anesthesiologists toward Artificial Intelligence in Anesthesia: A Multicenter, Mixed Qualitative–Quantitative Study
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David Henckert, Amos Malorgio, Giovanna Schweiger, Florian J. Raimann, Florian Piekarski, Kai Zacharowski, Sebastian Hottenrott, Patrick Meybohm, David W. Tscholl, Donat R. Spahn, and Tadzio R. Roche
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artificial intelligence ,machine learning ,anesthesia ,anesthesiology ,qualitative research ,clinical decision support ,Medicine - Abstract
Artificial intelligence (AI) is predicted to play an increasingly important role in perioperative medicine in the very near future. However, little is known about what anesthesiologists know and think about AI in this context. This is important because the successful introduction of new technologies depends on the understanding and cooperation of end users. We sought to investigate how much anesthesiologists know about AI and what they think about the introduction of AI-based technologies into the clinical setting. In order to better understand what anesthesiologists think of AI, we recruited 21 anesthesiologists from 2 university hospitals for face-to-face structured interviews. The interview transcripts were subdivided sentence-by-sentence into discrete statements, and statements were then grouped into key themes. Subsequently, a survey of closed questions based on these themes was sent to 70 anesthesiologists from 3 university hospitals for rating. In the interviews, the base level of knowledge of AI was good at 86 of 90 statements (96%), although awareness of the potential applications of AI in anesthesia was poor at only 7 of 42 statements (17%). Regarding the implementation of AI in anesthesia, statements were split roughly evenly between pros (46 of 105, 44%) and cons (59 of 105, 56%). Interviewees considered that AI could usefully be used in diverse tasks such as risk stratification, the prediction of vital sign changes, or as a treatment guide. The validity of these themes was probed in a follow-up survey of 70 anesthesiologists with a response rate of 70%, which confirmed an overall positive view of AI in this group. Anesthesiologists hold a range of opinions, both positive and negative, regarding the application of AI in their field of work. Survey-based studies do not always uncover the full breadth of nuance of opinion amongst clinicians. Engagement with specific concerns, both technical and ethical, will prove important as this technology moves from research to the clinic.
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- 2023
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12. Visual Blood, Visualisation of Blood Gas Analysis in Virtual Reality, Leads to More Correct Diagnoses: A Computer-Based, Multicentre, Simulation Study
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Lisa Bergauer, Samira Akbas, Julia Braun, Michael T. Ganter, Patrick Meybohm, Sebastian Hottenrott, Kai Zacharowski, Florian J. Raimann, Eva Rivas, Manuel López-Baamonde, Donat R. Spahn, Christoph B. Noethiger, David W. Tscholl, and Tadzio R. Roche
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virtual reality ,blood gas analysis ,data display ,point-of-care ,situation awareness ,user-centred design ,Technology ,Biology (General) ,QH301-705.5 - Abstract
Interpreting blood gas analysis results can be challenging for the clinician, especially in stressful situations under time pressure. To foster fast and correct interpretation of blood gas results, we developed Visual Blood. This computer-based, multicentre, noninferiority study compared Visual Blood and conventional arterial blood gas (ABG) printouts. We presented six scenarios to anaesthesiologists, once with Visual Blood and once with the conventional ABG printout. The primary outcome was ABG parameter perception. The secondary outcomes included correct clinical diagnoses, perceived diagnostic confidence, and perceived workload. To analyse the results, we used mixed models and matched odds ratios. Analysing 300 within-subject cases, we showed noninferiority of Visual Blood compared to ABG printouts concerning the rate of correctly perceived ABG parameters (rate ratio, 0.96; 95% CI, 0.92–1.00; p = 0.06). Additionally, the study revealed two times higher odds of making the correct clinical diagnosis using Visual Blood (OR, 2.16; 95% CI, 1.42–3.29; p < 0.001) than using ABG printouts. There was no or, respectively, weak evidence for a difference in diagnostic confidence (OR, 0.84; 95% CI, 0.58–1.21; p = 0.34) and perceived workload (Coefficient, 2.44; 95% CI, −0.09–4.98; p = 0.06). This study showed that participants did not perceive the ABG parameters better, but using Visual Blood resulted in more correct clinical diagnoses than using conventional ABG printouts. This suggests that Visual Blood allows for a higher level of situation awareness beyond individual parameters’ perception. However, the study also highlighted the limitations of today’s virtual reality headsets and Visual Blood.
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- 2023
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13. User Perceptions of ROTEM-Guided Haemostatic Resuscitation: A Mixed Qualitative–Quantitative Study
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Greta Gasciauskaite, Amos Malorgio, Clara Castellucci, Alexandra Budowski, Giovanna Schweiger, Michaela Kolbe, Bastian Grande, Christoph B. Noethiger, Donat R. Spahn, Tadzio R. Roche, David W. Tscholl, and Samira Akbas
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haemostasis ,coagulation management ,point-of-care ,viscoelastic test ,rotational thromboelastometry ,user-centred design ,Technology ,Biology (General) ,QH301-705.5 - Abstract
Viscoelastic point-of-care haemostatic resuscitation methods, such as ROTEM or TEG, are crucial in deciding on time-efficient personalised coagulation interventions. International transfusion guidelines emphasise increased patient safety and reduced treatment costs. We analysed care providers’ perceptions of ROTEM to identify perceived strengths and areas for improvement. We conducted a single-centre, mixed qualitative–quantitative study consisting of interviews followed by an online survey. Using a template approach, we first identified themes in the responses given by care providers about ROTEM. Later, the participants rated six statements based on the identified themes on five-point Likert scales in an online questionnaire. Seventy-seven participants were interviewed, and 52 completed the online survey. By analysing user perceptions, we identified ten themes. The most common positive theme was “high accuracy”. The most common negative theme was “need for training”. In the online survey, 94% of participants agreed that monitoring the real-time ROTEM temograms helps to initiate targeted treatment more quickly and 81% agreed that recurrent ROTEM training would be beneficial. Anaesthesia care providers found ROTEM to be accurate and quickly available to support decision-making in dynamic and complex haemostatic situations. However, clinicians identified that interpreting ROTEM is a complex and cognitively demanding task that requires significant training needs.
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- 2023
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14. Visual Blood, a 3D Animated Computer Model to Optimize the Interpretation of Blood Gas Analysis
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Giovanna Schweiger, Amos Malorgio, David Henckert, Julia Braun, Patrick Meybohm, Sebastian Hottenrott, Corinna Froehlich, Kai Zacharowski, Florian J. Raimann, Florian Piekarski, Christoph B. Noethiger, Donat R. Spahn, David W. Tscholl, and Tadzio R. Roche
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blood gas analysis ,medical devices ,point-of-care-testing ,situational awareness ,technology ,Technology ,Biology (General) ,QH301-705.5 - Abstract
Acid–base homeostasis is crucial for all physiological processes in the body and is evaluated using arterial blood gas (ABG) analysis. Screens or printouts of ABG results require the interpretation of many textual elements and numbers, which may delay intuitive comprehension. To optimise the presentation of the results for the specific strengths of human perception, we developed Visual Blood, an animated virtual model of ABG results. In this study, we compared its performance with a conventional result printout. Seventy physicians from three European university hospitals participated in a computer-based simulation study. Initially, after an educational video, we tested the participants’ ability to assign individual Visual Blood visualisations to their corresponding ABG parameters. As the primary outcome, we tested caregivers’ ability to correctly diagnose simulated clinical ABG scenarios with Visual Blood or conventional ABG printouts. For user feedback, participants rated their agreement with statements at the end of the study. Physicians correctly assigned 90% of the individual Visual Blood visualisations. Regarding the primary outcome, the participants made the correct diagnosis 86% of the time when using Visual Blood, compared to 68% when using the conventional ABG printout. A mixed logistic regression model showed an odds ratio for correct diagnosis of 3.4 (95%CI 2.00–5.79, p < 0.001) and an odds ratio for perceived diagnostic confidence of 1.88 (95%CI 1.67–2.11, p < 0.001) in favour of Visual Blood. A linear mixed model showed a coefficient for perceived workload of −3.2 (95%CI −3.77 to −2.64) in favour of Visual Blood. Fifty-one of seventy (73%) participants agreed or strongly agreed that Visual Blood was easy to use, and fifty-five of seventy (79%) agreed that it was fun to use. In conclusion, Visual Blood improved physicians’ ability to diagnose ABG results. It also increased perceived diagnostic confidence and reduced perceived workload. This study adds to the growing body of research showing that decision-support tools developed around human cognitive abilities can streamline caregivers’ decision-making and may improve patient care.
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- 2023
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15. Visual Attention of Anesthesia Providers in Simulated Anesthesia Emergencies Using Conventional Number-Based and Avatar-Based Patient Monitoring: Prospective Eye-Tracking Study
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Arsène Ljubenovic, Sadiq Said, Julia Braun, Bastian Grande, Michaela Kolbe, Donat R Spahn, Christoph B Nöthiger, David W Tscholl, and Tadzio R Roche
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Information technology ,T58.5-58.64 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundInadequate situational awareness accounts for two-thirds of preventable complications in anesthesia. An essential tool for situational awareness in the perioperative setting is the patient monitor. However, the conventional monitor has several weaknesses. Avatar-based patient monitoring may address these shortcomings and promote situation awareness, a prerequisite for good decision making. ObjectiveThe spatial distribution of visual attention is a fundamental process for achieving adequate situation awareness and thus a potential quantifiable surrogate for situation awareness. Moreover, measuring visual attention with a head-mounted eye-tracker may provide insights into usage and acceptance of the new avatar-based patient monitoring modality. MethodsThis prospective eye-tracking study compared anesthesia providers' visual attention on conventional and avatar-based patient monitors during simulated critical anesthesia events. We defined visual attention, measured as fixation count and dwell time, as our primary outcome. We correlated visual attention with the potential confounders: performance in managing simulated critical anesthesia events (task performance), work experience, and profession. We used mixed linear models to analyze the results. ResultsFifty-two teams performed 156 simulations. After a manual quality check of the eye-tracking footage, we excluded 57 simulations due to technical problems and quality issues. Participants had a median of 198 (IQR 92.5-317.5) fixations on the patient monitor with a median dwell time of 30.2 (IQR 14.9-51.3) seconds. We found no significant difference in participants' visual attention when using avatar-based patient monitoring or conventional patient monitoring. However, we found that with each percentage point of better task performance, the number of fixations decreased by about 1.39 (coefficient –1.39; 95% CI –2.44 to –0.34; P=.02), and the dwell time diminished by 0.23 seconds (coefficient –0.23; 95% CI: –0.4 to –0.06; P=.01). ConclusionsUsing eye tracking, we found no significant difference in visual attention when anesthesia providers used avatar-based monitoring or conventional patient monitoring in simulated critical anesthesia events. However, we identified visual attention in conjunction with task performance as a surrogate for situational awareness.
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- 2022
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16. Farm systems research at Ruakura – a 60-year legacy underpinning profitable and sustainable pasture-based dairy systems
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Kevin A. Macdonald and John R. Roche
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Soil Science ,Animal Science and Zoology ,Plant Science ,Agronomy and Crop Science - Published
- 2023
17. User Perceptions of Visual Clot in a High–Fidelity Simulation Study: a Mixed Qualitative–Quantitative Study (Preprint)
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Greta Gasciauskaite, Clara Castellucci, Amos Malorgio, Alexandra D. Budowski, Giovanna Schweiger, Michaela Kolbe, Daniel Fries, Bastian Grande, Christoph B. Nöthiger, Donat R. Spahn, Tadzio R. Roche, David W. Tscholl, and Samira Akbas
- Abstract
BACKGROUND Viscoelastic hemostatic assays, such as ROTEM or TEG, enable prompt diagnosis and accelerate targeted treatment. However, the complex interpretation of the results remains challenging. Visual Clot - a situation awareness-based visualization technology - was developed to assist clinicians in interpreting viscoelastic tests. OBJECTIVE Following a previous high-fidelity simulation study, we analyzed users' perceptions of the technology to identify its strengths and limitations from clinicians' perspectives. METHODS This is a mixed qualitative-quantitative study consisting of interviews and an online survey. After solving coagulation scenarios using Visual Clot in high-fidelity simulations, we interviewed anesthesia personnel about the perceived advantages and disadvantages of the new tool. We used a template approach to identify dominant themes in interview responses. Out of these themes, we then defined five main statements, which were rated on Likert scales in the online questionnaire. RESULTS We interviewed 77 participants and 23 completed the online survey. We identified nine frequently mentioned topics by analyzing interview responses. The most common themes were ``positive design features``, ``intuitive and easy to learn`` and ``lack of a quantitative component ``. In the online survey, 70% of participants agreed that Visual Clot is easy to learn and that a combination of Visual Clot and ROTEM would help manage complex hemostatic situations. CONCLUSIONS A group of anesthesia care providers found Visual Clot well-designed, intuitive and easy to learn. Participants highlighted its usefulness in emergencies, especially for clinicians inexperienced in coagulation management. However, the lack of quantitative information is an area for improvement.
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- 2023
18. Changes in plasma electrolytes, minerals, and hepatic markers of health across the transition period in dairy cows divergent in genetic merit for fertility traits and postpartum anovulatory intervals
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C.V.C. Phyn, T.M. Grala, O.M. Jordan, John R Roche, Chris R. Burke, B. Kuhn-Sherlock, and Susanne Meier
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Bilirubin ,media_common.quotation_subject ,Period (gene) ,Ice calving ,Fertility ,Fatty Acids, Nonesterified ,Biology ,Plasma electrolytes ,Electrolytes ,chemistry.chemical_compound ,Animal science ,Genetics ,Animals ,Lactation ,Retrospective Studies ,media_common ,Estrous cycle ,Minerals ,3-Hydroxybutyric Acid ,Postpartum Period ,Milk ,Liver ,chemistry ,Herd ,Cattle ,Female ,Animal Science and Zoology ,Genetic merit ,Food Science - Abstract
Peripartum metabolism and subsequent reproductive performance of dairy cows are linked, with maladaptation over the transition period associated with poor reproductive success. A herd of seasonal calving, grazing dairy cows was established that differed in their genetic merit for fertility traits. The heifers were produced by a customized mating program to achieve a 10-percentage point divergence in the New Zealand fertility breeding value (FertBV) as follows: +5 FertBV (POS) versus −5% FertBV (NEG), while also limiting divergence in other breeding values, including body weight, body condition score, and milk production. In this study, we aimed to characterize differences in metabolic, mineral, and metabolic stress marker profiles during their first postpartum transition period as primiparous heifers and to examine if animals with longer postpartum anestrous intervals (PPAI; more than 66 d compared with less than 35 d) had greater metabolic dysfunction. Blood was sampled at −21, −14, −7, 0, 4, 7, 10, 14, 17, 21, 28, and 35 d relative to calving in 455 primiparous cows and plasma analyzed. The NEG cows had lower concentrations of both plasma nonesterified fatty acids and β-hydroxybutyrate at d 7 compared with POS cows. Detailed temporal profiling of various metabolic, mineral, and metabolic stress markers was undertaken in a subset of cows (n = 70). Cows were selected retrospectively to create 4 groups in a 2 × 2 factorial design with either a POS or NEG FertBV and either a short (19–35 d) or long (66–131 d) PPAI. The NEG cows tended, on average, to have lower nonesterified fatty acids and β-hydroxybutyrate concentrations compared with POS cows across the transition period. Mean body weight and body condition score was greatest in NEG cows when compared with the POS cows and an interaction with day demonstrated this only occurred precalving. They also had indications of improved liver health precalving, with higher albumin-to-globulin ratios and lower bilirubin concentrations. Concentrations of aspartate aminotransferase were lower, and the Na-to-Cl ratio was greater in cows with a long versus a short PPAI at d 28 and d 35 after calving, potentially because of cows with a short PPAI (19–35 d) returning to estrous during this time. Magnesium concentrations were lower in NEG cows with a short PPAI from d 21 onwards, indicating NEG cows may metabolically respond to estrous differently than POS cows. The NEG-long PPAI cows had greater gamma-glutamyl transferase concentrations from calving until d 28 and lower bilirubin concentrations throughout the transition period. Together, the results demonstrate significant effects of FertBV on peripartum metabolic status. However, most of the markers tested returned to reference intervals within 4 d after calving or remained within those intervals for the whole transition period, indicating relatively minor biological effects of FertBV on transition period adaptation. The profound differences in reproductive performance among the groups was not explained by underlying differences in metabolic responses during the transition period.
- Published
- 2022
19. Catchment processes can amplify the effect of increasing rainfall variability
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Marc F Müller, Kevin R Roche, and David N Dralle
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climate change ,rainfall ,stream flow ,water resources ,Environmental technology. Sanitary engineering ,TD1-1066 ,Environmental sciences ,GE1-350 ,Science ,Physics ,QC1-999 - Abstract
By filtering the incoming climate signal when producing streamflow, river basins can attenuate—or amplify—projected increases in rainfall variability. A common perception is that river systems dampen rainfall variability by averaging spatial and temporal variations in their watersheds. However, by analyzing 671 watersheds throughout the United States, we find that many catchments actually amplify the coefficient of variation of rainfall, and that these catchments also likely amplify changes in rainfall variability. Based on catchment-scale water balance principles, we relate that faculty to the interplay between two fundamental hydrological processes: water uptake by vegetation and the storage and subsequent release of water as discharge. By increasing plant water uptake, warmer temperatures might exacerbate the amplifying effect of catchments. More variable precipitations associated with a warmer climate are therefore expected to lead to even more variable river flows—a significant potential challenge for river transportation, ecosystem sustainability and water supply reliability.
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- 2021
- Full Text
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20. Attitudes of Anesthesiologists Towards Artificial Intelligence in Anesthesia: An International, Mixed Qualitative-Quantitative Study (Preprint)
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David Henckert, Amos Malorgio, Giovanna Schweiger, Florian J Raimann, Florian Piekarski, Kai Zacharowski, Sebastian Hottenrott, Patrick Meybohm, David W Tscholl, Donat R Spahn, and Tadzio R Roche
- Abstract
BACKGROUND Artificial intelligence (AI) is predicted to play an increasingly important role in perioperative medicine in the very near future. However, little is known about what anesthesiologists know and think about AI in this context. This is important because the successful introduction of new technologies depends on the understanding and cooperation of end users. OBJECTIVE Investigate how much anesthesiologists know about AI, and what they think about the introduction of AI-based technologies into the clinical setting. METHODS In order to better understand what anesthesiologists think of AI, we recruited 21 anesthesiologists from two university hospitals for face-to-face structured interviews. Thematic analysis was applied to statements derived from these interviews, and key themes were determined. Subsequently, a survey of closed questions based on these themes was sent to 70 anesthesiologists from three university hospitals for rating. RESULTS In the interviews, the base level of knowledge of AI was good at 86 of 90 statements (96%), although awareness of potential applications of AI in anesthesia was poor at only 7 of 42 statements (17%). Regarding the implementation of AI in anesthesia, statements were split roughly evenly between pros (46 of 105, 44%) and cons (59 of 105, 56%). Interviewees considered that AI could usefully be used in diverse tasks such as risk stratification, the prediction of vital sign changes, or as a treatment guide. The validity of these themes was probed in a follow-up survey of 70 anesthesiologists with a response rate of 70%, which confirmed an overall positive view of AI in this group. CONCLUSIONS Anesthesiologists hold a range of opinions, both positive and negative, regarding the application of AI in their field of work. Survey-based studies do not always uncover the full breadth of nuance of opinion amongst clinicians. Engagement with specific concerns, both technical and ethical, will prove important as this technology moves from research into the clinic.
- Published
- 2022
21. Real-Time Cardiac Beat Detection and Heart Rate Monitoring from Combined Seismocardiography and Gyrocardiography.
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Yannick D'Mello, James Skoric, Shicheng Xu, Philip J. R. Roche, Michel A. Lortie, Stéphane Gagnon, and David V. Plant
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- 2019
- Full Text
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22. Revelation of the sciences of traditional foods
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Zhen Jia, Boce Zhang, Arnav Sharma, Nathalie S. Kim, Sonia M. Purohit, Madison M. Green, Michelle R. Roche, Emma Holliday, and Hongda Chen
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Food Science ,Biotechnology - Published
- 2023
23. Graduate Student Literature Review: Evaluating the appropriate use of wearable accelerometers in research to monitor lying behaviors of dairy cows
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DJ Donaghy, C.V.C. Phyn, John R Roche, S.J. Hendriks, K.R. Mueller, S. A. Turner, and J.M. Huzzey
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Computer science ,Wearable computer ,Accelerometer ,Appropriate use ,Wearable Electronic Devices ,03 medical and health sciences ,Estrus ,Accelerometry ,Genetics ,Animals ,Students ,Dairy cattle ,Wearable technology ,Monitoring, Physiologic ,030304 developmental biology ,0303 health sciences ,Behavior, Animal ,business.industry ,0402 animal and dairy science ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,Data science ,Automation ,Dairying ,Milk ,Cattle ,Female ,Animal Science and Zoology ,business ,Raw data ,Lying ,Food Science - Abstract
Until recently, animal behavior has been studied through close and extensive observation of individual animals and has relied on subjective assessments. Wearable technologies that allow the automation of dairy cow behavior recording currently dominate the precision dairy technology market. Wearable accelerometers provide new opportunities in animal ethology using quantitative measures of dairy cow behavior. Recent research developments indicate that quantitative measures of behavior may provide new objective on-farm measures to assist producers in predicting, diagnosing, and managing disease or injury on farms and allowing producers to monitor cow comfort and estrus behavior. These recent research developments and a large increase in the availability of wearable accelerometers have led to growing interest of both researchers and producers in this technology. This review aimed to summarize the studies that have validated lying behavior derived from accelerometers and to describe the factors that should be considered when using leg-attached accelerometers and neck-worn collars to describe lying behavior (e.g., lying time and lying bouts) in dairy cows for research purposes. Specifically, we describe accelerometer technology, including the instrument properties and methods for recording motion; the raw data output from accelerometers; and methods developed for the transformation of raw data into meaningful and interpretable information. We highlight differences in validation study outcomes for researchers to consider when developing their own experimental methodology for the use of accelerometers to record lying behaviors in dairy cows. Finally, we discuss several factors that may influence the data recorded by accelerometers and highlight gaps in the literature. We conclude that researchers using accelerometers to record lying behaviors in dairy cattle should (1) select an accelerometer device that, based on device attachment and sampling rate, is appropriate to record the behavior of interest; (2) account for cow-, farm-, and management-related factors that could affect the lying behaviors recorded; (3) determine the appropriate editing criteria for the accurate interpretation of their data; (4) support their chosen method of recording, editing, and interpreting the data by referencing an appropriately designed and accurate validation study published in the literature; and (5) report, in detail, their methodology to ensure others can decipher how the data were captured and understand potential limitations of their methodology. We recommend that standardized protocols be developed for collecting, analyzing, and reporting lying behavior data recorded using wearable accelerometers for dairy cattle.
- Published
- 2020
24. Associations between lying behavior and activity and hypocalcemia in grazing dairy cows during the transition period
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John R Roche, S.J. Hendriks, K.R. Mueller, C.V.C. Phyn, J.M. Huzzey, DJ Donaghy, S.-A. Turner, and B. Kuhn-Sherlock
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Rest ,Posture ,Cattle Diseases ,Ice calving ,Early detection ,Body weight ,03 medical and health sciences ,Animal science ,Pregnancy ,Grazing ,Genetics ,medicine ,Animals ,Lactation ,Herbivory ,Retrospective Studies ,030304 developmental biology ,Parturient Paresis ,0303 health sciences ,Total plasma ,Behavior, Animal ,Hypocalcemia ,business.industry ,Body Weight ,Metabolic disorder ,0402 animal and dairy science ,Milk fever ,04 agricultural and veterinary sciences ,medicine.disease ,040201 dairy & animal science ,Parity ,Milk ,Calcium ,Cattle ,Female ,Animal Science and Zoology ,business ,Food Science - Abstract
Hypocalcemia is a common metabolic disorder of transition dairy cows that is considered a gateway disease, increasing the risk of other health disorders and reducing cow performance. Clinical milk fever is associated with long periods of recumbency, and it is plausible that cows experiencing non-paretic hypocalcemia may spend more time lying; hence, lying behavior and activity measures may be useful in identifying at-risk cows. The objective of this study was to describe associations among blood calcium (Ca) status at calving and lying behavior and activity measures during the transition period in grazing dairy cows. Blood was sampled on the day of calving (d 0), and d 1, 2, 3, and 4 postcalving, and analyzed for total plasma Ca concentration. Twenty-four multiparous Holstein-Friesian and Holstein-Friesian × Jersey grazing dairy cows were classified, retrospectively, as clinically hypocalcemic (CLIN; blood Ca ≤ 1.4 mmol/L at 1 or more consecutive samplings within 48 h postcalving, but without parturient paresis). These cows were pair-matched (using milk production potential from their estimated breeding value for milk protein, mean body weight at wk -5 and -6 precalving, and, where possible, parity) with 24 cows classified as subclinically hypocalcemic (SUB; blood Ca > 1.4 and < 2.0 mmol/L at 2 consecutive samplings within 48 h postcalving), and 24 cows classified as normocalcemic (NORM; blood Ca ≥ 2.0 mmol/L at 3 consecutive samplings within 72 h postcalving). Lying behavior and activity were monitored using triaxial accelerometers from -21 to +35 d relative to calving. Data were summarized to calculate daily lying time (h/d), daily number of lying bouts (LB; no./d), mean LB duration (min/bout), and the number of steps taken (steps/d). On d 0, the CLIN group were less active and spent approximately 2.6 h longer lying than the SUB and NORM groups, particularly between 0200 and 1400 h. On d 0, the NORM group had fewer LB (16.3/d) than the SUB and CLIN groups (18.2 and 19.2/d, respectively). These differences in behavior were no longer detected 2 d postcalving, and no further differences were observed. The day before calving, the CLIN group spent 1.4 h longer lying down than did the SUB and NORM groups. Further, the relative change in steps from a precalving baseline period (d -14 to -7) until d 0 was positively, linearly associated with blood Ca concentration within 24 h postcalving. Future work should consider daily and temporal changes in behavior in individual cows to determine the potential for these measures to allow early detection of hypocalcemia.
- Published
- 2020
25. On Levine’s notorious hat puzzle
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Joe Buhler, Chris Freiling, Ron Graham, Jonathan Kariv, James R Roche, Mark Tiefenbruck, Clint Van Alten, and Dmytro Yeroshkin
- Published
- 2022
26. Anesthesia personnel’s visual attention regarding patient monitoring in simulated routine and critical incidents. An eye-tracking study
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Tadzio R. Roche, Elise J. Maas, Sadiq Said, Julia Braun, Carl Machado, Donat R. Spahn, Christoph B. Noethiger, and David W. Tscholl
- Abstract
Background: Cognitive ergonomics design of patient monitoring may reduce human factor errors in high-stress environments. Eye-tracking is a suitable tool to gain insight into the visual interaction of healthcare professionals with patient monitors, which may facilitate their further development.Methods: This prospective, randomized, high-fidelity simulation study compared anesthesia personnel's visual attention (fixation count and dwell time) to 15 areas of interest on the patient monitor during critical and non-critical anesthesia scenarios. Furthermore, we examined the extent to which participants' experience influenced visual attention and which vital signs displayed on the patient monitor received the most visual attention. We used mixed zero-inflated Poisson regression and mixed linear models to analyze the results.Results: Analyzing 23 ten-minute scenarios, we found significantly more fixations to the areas of interest on the patient monitor during critical situations (rate ratio of 1.45; 95% CI 1.33 to 1.59; p < 0.001). However, the dwell-time on the areas of interest did not significantly differ between the critical and non-critical scenarios (coefficient of –1.667; 95% CI –4.549 to 1.229; p = 0.27). The professional experience did not significantly influence the visual attention (fixation: rate ratio of 0.88; 95% CI 0.54 to 1.43; p = 0.61 and dwell-time: coefficient of 0.889; 95% CI –1.465 to 3.229; p = 0.27). Regarding vital signs, anesthesia personnel paid the most attention to blood pressure (fixation: mean [SD] of 108 [74.83]; dwell-time: mean [SD] of 27 [15.90] seconds), end-expiratory carbon dioxide (fixation: mean [SD] of 59 [47.39]; dwell-time: mean [SD] of 30 [21.51] seconds), and the electrocardiogram (fixation: mean [SD] of 58 [64.70]; dwell-time: mean [SD] of 15 [14.95] seconds).Conclusions: Critical anesthesia situations increased anesthesia personnel’s visual interaction with the patient monitor. Furthermore, we found that their visual attention focused mainly on a few vital signs. To assist clinicians in critical situations, manufacturers should optimize monitors to convey necessary information as easily and quickly as possible and optimize the visibility of less frequently observed but equally critical vital signs, especially when they are in an abnormal range.
- Published
- 2022
27. A Camera Phone Localised Surface Plasmon Biosensing Platform towards Low-Cost Label-Free Diagnostic Testing.
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Philip J. R. Roche, Sandrine Filion-Côté, Maurice C.-K. Cheung, Vamsy P. Chodavarapu, and Andrew G. Kirk
- Published
- 2011
- Full Text
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28. Dairy expansion: a case study of spring-calving pasture-based dairy production systems in Ireland
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K. M. Pierce, George Ramsbottom, J. R. Roche, and Brendan Horan
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Net profit ,0303 health sciences ,geography ,geography.geographical_feature_category ,Profit (accounting) ,0402 animal and dairy science ,Ice calving ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,Pasture ,03 medical and health sciences ,Agricultural science ,Grazing ,Genetics ,Environmental science ,Production (economics) ,Animal Science and Zoology ,Economic impact analysis ,Agronomy and Crop Science ,Productivity ,030304 developmental biology - Abstract
Since 1 April 2015, European dairy milk quotas have been removed resulting in the intensification of dairy production within EU countries. The aim of this study was to evaluate the physical and economic impacts of the initial intensification undertaken within Irish grazing dairy systems. Physical and financial data for 868 seasonal calving dairy farmers with records for each of the years 2013–2017 inclusive were used in this analysis. All analyses were undertaken using a mixed-model framework in PROC MIXED. The overall level of fat plus protein productivity of studied farms increased by 51% during the 5-year period through a combination of increased production per cow, increased operational scale and system intensification. Overall farm net profit was highly variable between years and was greatest in 2017 (€133 836) and least in 2016 (€65 176). When farms were characterized into milk production expansion quartiles, farms in Q1, Q2, Q3 and Q4 increased output by +7, +25, +44 and +86%, respectively. Whereas total farm profit (€/farm) declined for Q1 farms between 2013/2014 and 2016/2017 (€−5257; −7%), the greater expansion undertaken in Q2, Q3 and Q4 resulted in increases of €3046 (+4%), €20 810 (+25%) and €51 604 (+62%), respectively. In all strategies studied, farm profit increased due to a combination of increased revenues, increased pasture utilization and a dilution of per unit production costs. Further investigation of the longer term impacts of expansion is merited, not just in terms of economic indicators, but also in terms of environmental and socio-cultural change.
- Published
- 2020
29. Hepatic one-carbon metabolism enzyme activities and intermediate metabolites are altered by prepartum body condition score and plane of nutrition in grazing Holstein dairy cows
- Author
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M. A. Crookenden, Juan J. Loor, M. Vailati-Riboni, John R Roche, Murray D. Mitchell, Susanne Meier, Jane K. Kay, and Axel Heiser
- Subjects
Taurine ,Metabolite ,Cystathionine beta-Synthase ,Nutritional Status ,Ice calving ,Transsulfuration ,5-Methyltetrahydrofolate-Homocysteine S-Methyltransferase ,Antioxidants ,Choline ,03 medical and health sciences ,chemistry.chemical_compound ,Methionine ,Animal science ,Pregnancy ,Lactation ,Genetics ,medicine ,Animals ,Metabolomics ,Homocysteine ,030304 developmental biology ,0303 health sciences ,biology ,Postpartum Period ,0402 animal and dairy science ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,Carbon ,Breed ,Enzyme assay ,Diet ,medicine.anatomical_structure ,Betaine-Homocysteine S-Methyltransferase ,Liver ,chemistry ,biology.protein ,Cattle ,Female ,Animal Science and Zoology ,Energy Intake ,Energy Metabolism ,Food Science - Abstract
Precalving feeding level and body condition score (BCS) alter postcalving energy balance and oxidant status of dairy cows. We hypothesized that the reported benefits of a controlled restriction precalving depend on precalving BCS. The objective was to identify alterations in activity and intermediates of the hepatic one-carbon metabolism, transsulfuration, and tricarboxylic acid pathways. Twenty-eight pregnant and nonlactating grazing dairy cows of mixed age and breed (Friesian, Friesian × Jersey) were randomly allocated to 1 of 4 treatment groups in a 2 × 2 factorial design: 2 prepartum BCS categories [4.0 (thin, BCS4) and 5.0 (optimal, BCS5); 10-point scale], by managing cows in late lactation to achieve the 2 groups at dry-off, and 2 levels of energy intake during the 3 wk preceding calving (75 or 125% of estimated requirements), obtained via allowance (m2/cow) of fresh pasture composed of mostly perennial ryegrass and white cover. Average (± standard deviation) age was 6 ± 2, 6 ± 3, 5 ± 1, and 7 ± 3 yr for BCS4 fed 75 and 125%, and BCS5 fed 75 and 125%, respectively. Breed distribution (average ± standard deviation) for the 4 groups was 79 ± 21, 92 ± 11, 87 ± 31, and 74 ± 23% Friesian, and 17 ± 20, 8 ± 11, 13 ± 31, and 25 ± 23% Jersey. Liver tissue was collected by biopsy at -7, 7, and 28 d relative to calving. Tissue was used for 14C radio-labeling assays to measure betaine-homocysteine S-methyltransferase, 5-methyltetrahydrofolate-homocysteine methyltransferase (MTR), and cystathionine-β-synthase (CBS) activity. Liver metabolomics was undertaken using a targeted liquid chromatography with tandem mass spectrometry-based profiling approach. After initial liquid chromatography separation, mass spectra were acquired under both positive and negative ionization, whereas multiple reaction monitoring was used to measure target compound signal response (peak area count). Enzyme activity and metabolite peak area count were normalized with the homogenate protein concentration. Repeated measures analysis of variance via PROC MIXED in SAS (SAS Institute Inc., Cary, NC), with BCS, feeding, and time as fixed effects, and cow as random effect was used. All enzyme activities were affected by time, with betaine-homocysteine S-methyltransferase activity peaking at 7 d, whereas CBS and MTR activity decreased postpartum. Overall, thin cows had greater MTR activity, whereas cows fed 125% requirements had greater CBS activity. An interaction was detected between BCS and feeding for CBS activity, as thin cows fed 125% of requirements had greater overall activity. Compared with liver from BCS4 cows, BCS5 cows had overall greater betaine, glycine, butyrobetaine/acetylcholine, serine, and taurine concentrations. The same metabolites, plus choline and N-N-dimethylglycine, were overall greater in liver of cows fed 75% compared with those fed 125% of requirements. An interaction of BCS and feeding level was detected for the aforementioned metabolites plus methionine, cystathionine, cysteinesulfinate, and hypotaurine, due to greater overall concentrations in BCS5 cows fed 75% of requirements compared with other groups. Overall, differences in hepatic enzyme activity and intermediate metabolites suggest that both BCS and feeding level can alter the internal antioxidant system (e.g., glutathione and taurine) throughout the periparturient period. Further studies are needed to better understand potential mechanisms involved.
- Published
- 2020
30. A quantitative case study assessment of biophysical and economic effects from altering season of calving in temperate pasture-based dairy systems
- Author
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Martin J. Auldist, J.A.S. Lancaster, Kelli P. A. MacDonald, A.M. Bryant, O.K. Spaans, John R Roche, M. Neal, and G.J. Doole
- Subjects
Silage ,Ice calving ,Biology ,Pasture ,03 medical and health sciences ,chemistry.chemical_compound ,Animal science ,Grazing ,Genetics ,Animals ,Lactation ,Dry matter ,Lactose ,Hectare ,030304 developmental biology ,0303 health sciences ,geography ,geography.geographical_feature_category ,Parturition ,0402 animal and dairy science ,04 agricultural and veterinary sciences ,Animal Feed ,040201 dairy & animal science ,Diet ,Dairying ,Milk ,chemistry ,Herd ,Cattle ,Female ,Animal Science and Zoology ,Seasons ,Food Science - Abstract
In theory, a late winter–early spring calving date in temperate grazing systems best matches pasture supply and herd demand, thereby minimizing the need for nonpasture feeds and maximizing profitability. We used a quantitative case study approach to define the effects of season of calving on biophysical and financial performance in a grazing system without the confounding effects of imported feeds (i.e., milk production directly from grazed pasture). A 2-yr production system experiment was established to quantify the effects of changing onset of seasonal calving (i.e., planned start of calving; PSC) from winter (July in the Southern Hemisphere) to spring (October), summer, (January), or autumn (April) on pasture and animal production and profitability. Eighty Holstein-Friesian cows were randomly allocated to 1 of 4 PSC treatments, each of which had a different PSC [mean calving date of January 10 (JAN), April 10 (APR), July 10 (JUL), or October 10 (OCT)]. Data were analyzed for consistency of treatment response over years using ANOVA procedures with year, PSC treatment, and year × PSC treatment interactions as fixed effects. Collated biological data and financial data extracted from a national economic database were used as fixed variables to model the financial performance for the different treatments. A stochastic risk analysis was undertaken, where historical pasture growth and milk price data were used to estimate the probability distributions for stochastic input variables. Gross farm revenue and operating profit per hectare were modeled under 2 scenarios: (A) milk price did not include a premium for milk supplied during the winter, and (B) milk price included a realistic premium for milk supplied in winter. Annual and seasonal pasture growth did not differ between treatments, but the pasture growth (kg of dry matter/ha) and profile of the JUL treatment best matched the lactation nutrient demand profile. In comparison, profiles for JAN, APR, and OCT calving treatments had periods of greater surplus and deficit due to the time of calving and herd demand relative to the pasture growth profile. As a result, the JAN and OCT treatments conserved more pasture as silage and cows consumed a larger proportion of their annual diet as silage. Although the amount of silage conserved and consumed did not differ between the JUL and APR calving treatments, the timing of the silage consumption was different, with silage making up a greater proportion of the diets in the APR treatment 1 to 90 and 91 to 180 d postcalving and being offered to the JUL calving treatment only 271 to 365 d postcalving. As a result of differences in the quantity and proportion of pasture and pasture silage in the lactating diet, the JUL treatment herd tended to produce greater milk, 4% fat-corrected milk, fat, protein, and lactose yields (kg/cow) than the other PSC treatments, which did not differ from each other. Operating expenses per hectare did not differ materially between calving date scenarios, but operating expenses per kilogram of fat-corrected milk and kilogram of fat and protein were 15 to 20% less in the JUL treatment. With or without a realistic winter milk premium, gross farm revenue and operating profit per hectare were greater in the JUL treatment than in the APR treatment, which had greater revenue and profitability than the remaining 2 calving date treatments. In summary, our results indicate that a PSC in late winter is most profitable in a grazing system not importing feed, with or without a realistic price incentive scheme.
- Published
- 2019
31. Developing and maintaining professional standards: a personal view
- Author
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William R. Roche
- Subjects
0301 basic medicine ,Histology ,business.industry ,media_common.quotation_subject ,education ,Subject (philosophy) ,Professional practice ,Public relations ,Mental health ,Pathology and Forensic Medicine ,Ethos ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Promotion (rank) ,030220 oncology & carcinogenesis ,medicine ,Complaint ,Openness to experience ,Social isolation ,medicine.symptom ,Psychology ,business ,media_common - Abstract
The influence of medical culture and beliefs on the management of colleagues who pose risks of patient harm resulting from clinical errors or inappropriate behaviours is discussed. The importance of an evidence-based approach to the promotion of an ethos that is both conducive to openness and learning and that allows shortcomings to be identified and addressed is emphasised. A culture based on these principles is regarded as being fundamental to the development and maintenance of high standards of professional practice and conduct. Professional and social isolation of individual doctors, particularly of graduates from other countries, poses risks to both the doctors and patients and the mitigation of these risks is discussed. The need to address the mental wellbeing of doctors who are subject to complaints and/or investigations cannot be over-emphasised as there is a significant risk of self-harm in these situations.
- Published
- 2019
32. Visual Attention of Anesthesia Providers in Simulated Anesthesia Emergencies Using Conventional Number-Based and Avatar-Based Patient Monitoring: Prospective Eye-Tracking Study
- Author
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Arsène Ljubenovic, Sadiq Said, Julia Braun, Bastian Grande, Michaela Kolbe, Donat R Spahn, Christoph B Nöthiger, David W Tscholl, Tadzio R Roche, University of Zurich, and Roche, Tadzio R
- Subjects
10216 Institute of Anesthesiology ,Physical Therapy ,Rehabilitation ,Biomedical Engineering ,2204 Biomedical Engineering ,Physical Therapy, Sports Therapy and Rehabilitation ,610 Medicine & health ,10060 Epidemiology, Biostatistics and Prevention Institute (EBPI) ,Sports Therapy and Rehabilitation ,Computer Science Applications ,2742 Rehabilitation ,2738 Psychiatry and Mental Health ,Psychiatry and Mental health ,3612 Physical Therapy, Sports Therapy and Rehabilitation - Abstract
Background Inadequate situational awareness accounts for two-thirds of preventable complications in anesthesia. An essential tool for situational awareness in the perioperative setting is the patient monitor. However, the conventional monitor has several weaknesses. Avatar-based patient monitoring may address these shortcomings and promote situation awareness, a prerequisite for good decision making. Objective The spatial distribution of visual attention is a fundamental process for achieving adequate situation awareness and thus a potential quantifiable surrogate for situation awareness. Moreover, measuring visual attention with a head-mounted eye-tracker may provide insights into usage and acceptance of the new avatar-based patient monitoring modality. Methods This prospective eye-tracking study compared anesthesia providers' visual attention on conventional and avatar-based patient monitors during simulated critical anesthesia events. We defined visual attention, measured as fixation count and dwell time, as our primary outcome. We correlated visual attention with the potential confounders: performance in managing simulated critical anesthesia events (task performance), work experience, and profession. We used mixed linear models to analyze the results. Results Fifty-two teams performed 156 simulations. After a manual quality check of the eye-tracking footage, we excluded 57 simulations due to technical problems and quality issues. Participants had a median of 198 (IQR 92.5-317.5) fixations on the patient monitor with a median dwell time of 30.2 (IQR 14.9-51.3) seconds. We found no significant difference in participants' visual attention when using avatar-based patient monitoring or conventional patient monitoring. However, we found that with each percentage point of better task performance, the number of fixations decreased by about 1.39 (coefficient –1.39; 95% CI –2.44 to –0.34; P=.02), and the dwell time diminished by 0.23 seconds (coefficient –0.23; 95% CI: –0.4 to –0.06; P=.01). Conclusions Using eye tracking, we found no significant difference in visual attention when anesthesia providers used avatar-based monitoring or conventional patient monitoring in simulated critical anesthesia events. However, we identified visual attention in conjunction with task performance as a surrogate for situational awareness.
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- 2021
33. Visual Attention of Anesthesia Providers in Simulated Anesthesia Emergencies Using Conventional Number-Based and Avatar-Based Patient Monitoring: Prospective Eye-Tracking Study (Preprint)
- Author
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Arsène Ljubenovic, Sadiq Said, Julia Braun, Bastian Grande, Michaela Kolbe, Donat R Spahn, Christoph B Nöthiger, David W Tscholl, and Tadzio R Roche
- Abstract
BACKGROUND Inadequate situational awareness accounts for two-thirds of preventable complications in anesthesia. An essential tool for situational awareness in the perioperative setting is the patient monitor. However, the conventional monitor has several weaknesses. Avatar-based patient monitoring may address these shortcomings and promote situation awareness, a prerequisite for good decision making. OBJECTIVE The spatial distribution of visual attention is a fundamental process for achieving adequate situation awareness and thus a potential quantifiable surrogate for situation awareness. Moreover, measuring visual attention with a head-mounted eye-tracker may provide insights into usage and acceptance of the new avatar-based patient monitoring modality. METHODS This prospective eye-tracking study compared anesthesia providers' visual attention on conventional and avatar-based patient monitors during simulated critical anesthesia events. We defined visual attention, measured as fixation count and dwell time, as our primary outcome. We correlated visual attention with the potential confounders: performance in managing simulated critical anesthesia events (task performance), work experience, and profession. We used mixed linear models to analyze the results. RESULTS Fifty-two teams performed 156 simulations. After a manual quality check of the eye-tracking footage, we excluded 57 simulations due to technical problems and quality issues. Participants had a median of 198 (IQR 92.5-317.5) fixations on the patient monitor with a median dwell time of 30.2 (IQR 14.9-51.3) seconds. We found no significant difference in participants' visual attention when using avatar-based patient monitoring or conventional patient monitoring. However, we found that with each percentage point of better task performance, the number of fixations decreased by about 1.39 (coefficient –1.39; 95% CI –2.44 to –0.34; P=.02), and the dwell time diminished by 0.23 seconds (coefficient –0.23; 95% CI: –0.4 to –0.06; P=.01). CONCLUSIONS Using eye tracking, we found no significant difference in visual attention when anesthesia providers used avatar-based monitoring or conventional patient monitoring in simulated critical anesthesia events. However, we identified visual attention in conjunction with task performance as a surrogate for situational awareness.
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- 2021
34. Double Averaging Analysis Applied to a Large Eddy Simulation of Coupled Turbulent Overlying and Porewater Flow
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Wing Kam Liu, Benjamin Sonin, K. R. Roche, Gregory J. Wagner, Yanping Lian, J. Dallmann, and Aaron I. Packman
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Sediment–water interface ,Turbulence ,Flow (psychology) ,Hyporheic zone ,Mechanics ,Geology ,Water Science and Technology ,Large eddy simulation - Published
- 2021
35. The impact of biofilms and dissolved organic matter on the transport of nanoparticles in field-scale streams
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Junyeol Kim, Kevin R. Roche, Diogo Bolster, and Kyle Doudrick
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Titanium ,Environmental Engineering ,Biofilms ,Ecological Modeling ,Nanoparticles ,Dissolved Organic Matter ,Pollution ,Waste Management and Disposal ,Ecosystem ,Water Science and Technology ,Civil and Structural Engineering - Abstract
The fate and transport of nanoparticles (NPs) in streams is critical for understanding their overall environmental impact. Using a unique field-scale stream at the Notre Dame-Linked Experimental Ecosystem Facility, we investigated the impact of biofilms and the presence of dissolved organic matter (DOM) on the transport of titanium dioxide (TiO
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- 2022
36. On the Optimal Capacity of Binary Neural Networks: Rigorous Combinatorial Approaches.
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Jeong Han Kim and James R. Roche
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- 1995
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37. Coding for Computing.
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Alon Orlitsky and James R. Roche
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- 1995
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38. Gambling for the mnemonically impaired.
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James R. Roche
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- 2002
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39. Coding for computing.
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Alon Orlitsky and James R. Roche
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- 2001
- Full Text
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40. Benthic biolayer structure controls whole-stream reactive transport
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K. R. Roche and Marco Dentz
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Reaction rate ,Benthic zone ,Hyporheic zone ,Environmental science ,Soil science - Abstract
Hyporheic zone reaction rates are highest just below the sediment-water interface, in a shallow region called the benthic biolayer. Vertical variability of hyporheic reaction rates leads to unexpec...
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- 2021
41. Lifetime Climate Impacts of Diet Transitions: A Novel Climate Change Accounting Perspective
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Nick W. Smith, Jonathan E Barnsley, John Lynch, John R Roche, Lakshmi A. Dave, Warren C. McNabb, Paul Eze Eme, Chanjief Chandrakumar, Harry Clark, Bridget E P Bourke, David J. Frame, and Carlos Gonzalez-Fischer
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010504 meteorology & atmospheric sciences ,129999 Built Environment and Design not elsewhere classified ,111199 Nutrition and Dietetics not elsewhere classified ,Geography, Planning and Development ,Climate change ,TJ807-830 ,FOS: Health sciences ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,TD194-195 ,01 natural sciences ,Article ,Agricultural economics ,Renewable energy sources ,Nutrient ,Climate impact ,GE1-350 ,Uncategorized ,0105 earth and related environmental sciences ,Consumption (economics) ,GWP ,Environmental effects of industries and plants ,Renewable Energy, Sustainability and the Environment ,greenhouse gas emissions ,dietary change ,Dietary guideline ,Environmental sciences ,climate change ,Greenhouse gas ,Food systems ,Environmental science ,FOS: Civil engineering ,Global-warming potential ,New Zealand - Abstract
Dietary transitions, such as eliminating meat consumption, have been proposed as one way to reduce the climate impact of the global and regional food systems. However, it should be ensured that replacement diets are, indeed, nutritious and that climate benefits are accurately accounted for. This study uses New Zealand food consumption as a case study for exploring the cumulative climate impact of adopting the national dietary guidelines and the substitution of meat from hypothetical diets. The new GWP* metric is used as it was designed to better reflect the climate impacts of the release of methane than the de facto standard 100-year Global Warming Potential metric (GWP100). A transition at age 25 to the hypothetical dietary guideline diet reduces cumulative warming associated with diet by 7 to 9% at the 100th year compared with consuming the average New Zealand diet. The reduction in diet-related cumulative warming from the transition to a hypothetical meat-substituted diet varied between 12% and 15%. This is equivalent to reducing an average individual’s lifetime warming contribution by 2 to 4%. General improvements are achieved for nutrient intakes by adopting the dietary guidelines compared with the average New Zealand diet, however, the substitution of meat items results in characteristic nutrient differences, and these differences must be considered alongside changes in emission profiles.
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- 2021
42. Riverine macrophytes control seasonal nutrient uptake via both physical and biological pathways
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Tenna Riis, Diogo Bolster, Annette Baattrup-Pedersen, Anette Baisner Alnoee, K. R. Roche, Antoine Aubenau, Alexander J. Reisinger, Peter S. Levi, and Jennifer L. Tank
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river ,LOWLAND STREAMS ,chemistry.chemical_element ,Aquatic Science ,nitrogen ,NITROGEN UPTAKE ,Biological pathway ,Nutrient ,Transient storage ,WHOLE-STREAM METABOLISM ,transient storage ,phosphorus ,PHOSPHORUS UPTAKE ,stream ,Phosphorus ,SUBMERGED MACROPHYTES ,OXYGEN CHANGE TECHNIQUE ,DENITRIFICATION ,Nitrogen ,SOLUTE TRANSPORT ,Macrophyte ,chemistry ,Environmental chemistry ,AQUATIC MACROPHYTES ,GROWTH ,Environmental science - Abstract
In low-gradient, macrophyte-rich rivers, we expect that the significant change in macrophyte biomass among seasons will strongly influence both biological activity and hydraulic conditions resulting in significant effects on nutrient dynamics. Understanding seasonal variation will improve modelling of nutrient transport in river networks, including annual estimations of export, which could optimise decision-making and management outcomes. We explored the relationships among seasonal differences in reach-scale nutrient uptake, macrophyte abundance, solute transport and transient storage in the River Gudenå (Denmark), a large macrophyte-rich river. We used the minimal pulse addition technique to measure uptake of ammonium, nitrate, soluble reactive phosphorus, as well as reach-scale metabolism, and surface transient storage in spring, summer, and autumn. We found that riverine uptake changed among seasons and was linked to macrophyte biomass via both biological activity, reflected in reach-scale metabolism, and through physical processes, as solute transport was influenced by longitudinal dispersion. In this macrophyte-rich river, seasonal changes in macrophyte biomass affected contact time between the water and biota, which influenced ammonium and soluble reactive phosphorus uptake. Using stoichiometric scaling of reach-scale metabolism, we found that seasonal variation also influenced the relative contributions of autotrophic and heterotrophic biota in assimilatory uptake. In summary, riverine nutrient uptake was not static, highlighting the importance of seasonality, with significant implications for modelling of nutrient export in river networks. Moreover, current management strategies that remove macrophyte biomass (i.e. weed cutting and dredging) will short-circuit the positive effects of enhanced nutrient uptake resulting from abundant macrophytes in rivers.
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- 2019
43. Circulating exosomes may identify biomarkers for cows at risk for metabolic dysfunction
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Sarah Reed, Hassendrini N. Peiris, Yong Qin Koh, Olivia J. Holland, Fatema B. Almughlliq, Kanchan Vaswani, Buddhika J. Arachchige, Susanne Meier, Chris R. Burke, John R Roche, Murray D. Mitchell, and M. A. Crookenden
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0301 basic medicine ,Stromal cell ,040301 veterinary sciences ,Gene Expression ,lcsh:Medicine ,macromolecular substances ,Biology ,Exosomes ,Article ,0403 veterinary science ,Andrology ,Endometrium ,03 medical and health sciences ,Metabolic Diseases ,Lactation ,Gene expression ,medicine ,Animals ,lcsh:Science ,Triglycerides ,chemistry.chemical_classification ,Multidisciplinary ,3-Hydroxybutyric Acid ,fungi ,lcsh:R ,Fatty acid ,food and beverages ,Epithelial Cells ,04 agricultural and veterinary sciences ,Microvesicles ,PTGS2 Gene ,carbohydrates (lipids) ,030104 developmental biology ,medicine.anatomical_structure ,Liver ,chemistry ,Eicosanoid ,Proteome ,Nanoparticles ,Cattle ,Female ,Extracellular signalling molecules ,lcsh:Q ,Biomarkers - Abstract
Disease susceptibility of dairy cows is greatest during the transition from pregnancy to lactation. Circulating exosomes may provide biomarkers to detect at-risk cows to enhance health and productivity. From 490 cows, animals at high- (n = 20) or low-risk (n = 20) of transition-related diseases were identified using plasma non-esterified fatty acid and β-hydroxybutyrate concentrations and liver triacylglyceride concentrations during the two weeks post-calving. We isolated circulating exosomes from plasma of dairy cows at low-risk (LR-EXO) and high-risk (HR-EXO), and analyzed their proteome profiles to determine markers for metabolic dysfunction. We evaluated the effects of these exosomes on eicosanoid pathway expression by bovine endometrial stromal (bCSC) and epithelial (bEEL) cells. HR-EXO had significantly lower yield of circulating exosomes compared with LR-EXO, and unique proteins were identified in HR-EXO and LR-EXO. Exposure to LR-EXO or HR-EXO differentially regulated eicosanoid gene expression and production in bCSC and bEEL cells. In bCSC, LR-EXO exposure increased PGE2 and PGD2 production, whereas HR-EXO exposure increased PTGS2 gene expression. In bEEL, HR-EXO exposure caused a decrease in PGE2, PGF2α, PGD2, PGFM and TXB2 production. The unique presence of serpin A3-7, coiled-coil domain containing 88A and inhibin/activin β A chain in HR-EXO, indicates potential biomarkers for cows at-risk for metabolic diseases. Our results are in line with the health status of the cow indicating a potential diagnostic role for exosomes in enhancing cows’ health and fertility.
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- 2019
44. Autocorrelated Differential Algorithm for Real-Time Seismocardiography Analysis
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Shicheng Xu, James Skoric, Yannick D'Mello, Stephane Gagnon, Michel Lortie, Megan Akhras, Philip J. R. Roche, and David V. Plant
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Reproducibility ,Correlation coefficient ,Computation ,010401 analytical chemistry ,Autocorrelation ,01 natural sciences ,0104 chemical sciences ,Refresh rate ,Correlation ,Sampling (signal processing) ,Heart rate variability ,Electrical and Electronic Engineering ,Instrumentation ,Algorithm ,Mathematics - Abstract
We present a novel seismocardiography (SCG)-based approach for real-time cardio-respiratory activity measurement called the Autocorrelated Differential Algorithm (ADA). Measurements were performed on ten male subjects in the supine position for three 7-minute-long sets each, corresponding to 14,619 heartbeats. The ADA utilized temporal variations, windowing, and autocorrelation to produce physiological measurements corresponding to heart rate (HR), and left ventricular ejection time, and estimations of respiration rate, volume, and phase. The versatility of the ADA was investigated in two contexts: physical exertion and heart rate variability. The accuracy of HR measurements at a sampling frequency of 200 Hz resulted in a correlation coefficient ( $r^{2}$ ) of 0.9808 when compared with a manual annotation of all datasets. Its reproducibility was tested on externally obtained SCG and electrocardiography datasets, which produced an $r^{2}$ of 0.8224. The accuracy and computational time were also characterized by different sampling frequencies to quantify performance. The recommended sampling frequency is 200 Hz corresponding to a computation time of 0.05 s per instantaneous measurement using a standard desktop computer. The ADA delivered real-time SCG measurements with a refresh rate that was dependent on the computational time per measurement, which could be decreased by lowering the sampling frequency. The presented algorithm offers a novel tool toward real-time physiological monitoring in clinical and everyday scenarios.
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- 2019
45. Effects of Turbulent Hyporheic Mixing on Reach‐Scale Transport
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Angang Li, Diogo Bolster, Gregory J. Wagner, Aaron I. Packman, and K. R. Roche
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Flume ,Water column ,Turbulence ,Hyporheic zone ,Environmental science ,Mechanics ,Reduced mass ,Exponential decay ,Mixing (physics) ,Water Science and Technology ,Open-channel flow - Abstract
Turbulence causes rapid mixing of solutes and fine particles between open channel flow and coarse-grained streambeds. Turbulent mixing is known to control hyporheic exchange fluxes and the distribution of vertical mixing rates in the streambed, but it is unclear how turbulent mixing ultimately influences mass transport at the reach scale. We used a particle-tracking model to simulate local- and reach-scale solute transport for a stream with coarse-grained sediments. Simulations were first used to determine profiles of vertical mixing rates that best described solute concentration profiles measured within a coarse granular bed in flume experiments. These vertical mixing profiles were then used to simulate a pulse solute injection to show the effects of turbulent hyporheic exchange on reach-scale solute transport. Experimentally measured concentrations were best described by simulations with a non-monotonic mixing profile, with highest mixing at the sediment-water interface and exponential decay into the bed. Reach-scale simulations show that this enhanced interfacial mixing couples in-stream and hyporheic solute transport. Coupling produces an interval of exponential decay in breakthrough curves and delays the onset of power-law tailing. High streamwise velocities in the hyporheic zone reduced mass recovery in the water column and caused breakthrough curves to exhibit steeper power-law slopes than predictions from mobile-immobile modeling theory. These results demonstrate that transport models must consider the spatial variability of streamwise velocity and vertical mixing for both the stream and the hyporheic zone, and new analytical theory is needed to describe reach-scale transport when high streamwise velocities are present in the hyporheic zone.
- Published
- 2019
46. A Dual Domain stochastic lagrangian model for predicting transport in open channels with hyporheic exchange
- Author
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Diogo Bolster, K. R. Roche, Thomas Sherman, David Richter, and Aaron I. Packman
- Subjects
010504 meteorology & atmospheric sciences ,Scale (ratio) ,Turbulence ,0208 environmental biotechnology ,Scalar (physics) ,Direct numerical simulation ,CPU time ,02 engineering and technology ,Mechanics ,01 natural sciences ,020801 environmental engineering ,Open-channel flow ,Orders of magnitude (time) ,Environmental science ,Continuous-time random walk ,0105 earth and related environmental sciences ,Water Science and Technology - Abstract
The exchange of surface and subsurface waters plays an important role in understanding and predicting large scale transport processes in streams and rivers. Accurately capturing the influence of small-scale features associated with turbulent dispersion on exchange in an upscaled framework is necessary for developing reliable predictive models at the reach scale. In this work, we use high-fidelity direct numerical simulations (DNS) to fully resolve turbulent flow and hyporheic exchange in an open channel. We parameterize a 2D particle tracking model with the average DNS velocity and scalar diffusivity profiles. Breakthrough curves and rate of surface mass loss to the subsurface in both models agree after a sufficient distance downstream from particle injection. Finally we find that the travel time/distance joint pdf contains enough information to parameterize a 1D dual domain coupled Continuous Time Random Walk (ddc-CTRW) model that successfully reproduces the behavior of both the DNS and the 2D particle tracking model, allowing accurate prediction of breakthrough curves. Predicting breakthrough curves with a fully parameterized ddc-CTRW reduces cpu time by orders of magnitude when compared with DNS.
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- 2019
47. Modeling Benthic Versus Hyporheic Nutrient Uptake in Unshaded Streams With Varying Substrates
- Author
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Antoine F. Aubeneau, Diogo Bolster, K. R. Roche, Jennifer L. Tank, and Arial J. Shogren
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Atmospheric Science ,Ecology ,Paleontology ,Soil Science ,Forestry ,STREAMS ,Aquatic Science ,chemistry.chemical_compound ,Nutrient ,Nitrate ,chemistry ,Benthic zone ,Environmental chemistry ,Environmental science ,Water Science and Technology - Published
- 2019
48. Large eddy simulation of turbulent flow over and through a rough permeable bed
- Author
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Gregory J. Wagner, Yanping Lian, J. Dallmann, Wing Kam Liu, K. R. Roche, Aaron I. Packman, and B. Sonin
- Subjects
General Computer Science ,Turbulence ,General Engineering ,Mechanics ,01 natural sciences ,010305 fluids & plasmas ,Physics::Fluid Dynamics ,010101 applied mathematics ,Momentum ,Closure (computer programming) ,Flow (mathematics) ,Flow velocity ,Eddy ,0103 physical sciences ,0101 mathematics ,Freestream ,Geology ,Large eddy simulation - Abstract
This work elucidates the impacts of model construction choices on turbulence characteristics and solution fidelity in the simulation of coupled freestream and porous turbulent flows. A freestream-porewater interface is modeled numerically as a matrix of regularly spaced spheres submerged in a surrounding flow. Simulations are conducted to solve the continuity and momentum equations via Large Eddy Simulation (LES) using the Control Volume Finite Element Method (CVFEM) on an unstructured, surface-conforming mesh, and simulated flow fields are compared with experimental results. Key parameters are identified, allowing for model creation recommendations. A mesh refinement study is performed, and characteristic required mesh sizes in both the bed and the freestream are identified that achieve a good trade-off between accuracy and efficiency. Additionally, it is shown that similar to wall-bounded flows, the computational domain for a coupled freestream and porous flow must be sufficiently large to capture the relevant largest-sized eddies and to avoid the spanwise locking of flow structures; such structures may affect the flow field in the pores as well as in the freestream. Dimensions of 7.5H × 3.5H × H, where H is the freestream height, are found to give satisfactory comparison with experimental results for the cases studied. Finally, it is found that the wall-adapting local eddy-viscosity (WALE) turbulence closure scheme is better able to model the fluid velocity in the problem domain compared with the Smagorinsky model. Failure to select the proper turbulence closure model or domain size leads to a misrepresentation of the turbulent structures. Because of the strong coupling between the porewater flow and the freestream, these modeling errors propagate in both flow regions.
- Published
- 2019
49. Transport of food- and catalytic-grade titanium dioxide nanoparticles in controlled field streams with varying streambed and biofilm conditions
- Author
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John Sticha, Junyeol Kim, Diogo Bolster, K. R. Roche, Arial J. Shogren, and Kyle Doudrick
- Subjects
Chemistry ,Materials Science (miscellaneous) ,technology, industry, and agriculture ,Biofilm ,Nanoparticle ,Substrate (chemistry) ,02 engineering and technology ,STREAMS ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,01 natural sciences ,Catalysis ,chemistry.chemical_compound ,Water column ,Environmental chemistry ,Titanium dioxide ,0210 nano-technology ,Porosity ,0105 earth and related environmental sciences ,General Environmental Science - Abstract
With the increased use of nanoparticles (NPs) in consumer, food, and pharmaceutical products, their eventual release into streams is inevitable. Critical factors affecting the transport of NPs in streams are the hyporheic exchange between the water column and porous streambed substrate and the interaction with biofilms. In this study, the transport behavior of two titanium dioxide NPs – catalytic- (P90) and food-grade (E171) – was evaluated in four field streams lined with different streambed substrate sizes for varying seasonal biofilm conditions. When biofilm growth was minimal, NP retention in the streams increased with increasing substrate size due to increased hyporheic exchange and subsequent physical and chemical interactions between the NPs and substrate. For all streams, the average mass recovery at the 40 m sampling point for E171 and P90 was 44 ± 8.7% and 16 ± 8.0%, respectively. The greater mobility of E171 was due to the inherent presence of negatively charged surface phosphates that reduced aggregation and decreased its interaction with the substrate. When biofilms were thriving in the streams the average mass recovery at 40 m for both NPs decreased significantly (E171 = 5.8 ± 7.3%, P = 0.0017; P90 = 2.4 ± 0.7%, P = 0.041), and the mass recovery difference between the two NPs became insignificant (P = 0.38).
- Published
- 2019
50. Anthropogenic stressors compound climate impacts on inland lake dynamics: The case of Hamun Lakes
- Author
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Arash, Modaresi Rad, Jason, Kreitler, John T, Abatzoglou, Kendra, Fallon, Kevin R, Roche, and Mojtaba, Sadegh
- Subjects
Lakes ,Environmental Engineering ,Anthropogenic Effects ,Climate Change ,Humans ,Water ,Environmental Chemistry ,Agriculture ,Pollution ,Waste Management and Disposal ,Environmental Monitoring - Abstract
Inland lakes face unprecedented pressures from climatic and anthropogenic stresses, causing their recession and desiccation globally. Climate change is increasingly blamed for such environmental degradation, but in many regions, direct anthropogenic pressures compound, and sometimes supersede, climatic factors. This study examined a human-environmental system - the terminal Hamun Lakes on the Iran-Afghanistan border - that embodies amplified challenges of inland waters. Satellite and climatic data from 1984 to 2019 were fused, which documented that the Hamun Lakes lost 89% of their surface area between 1999 and 2001 (3809 km
- Published
- 2022
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