141 results on '"R. Jakes"'
Search Results
2. Demographic Characteristics of Patients Who Utilize Biologics for Severe Asthma: A Real-World European Perspective
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S. Valliant, S. Zhang, J. Harvey, G. Mu, R. Jakes, K. Emeanuru, K. Bruini Pitta Palhares, M. Andre, and R. Alfonso Cristancho
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- 2023
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3. Demographics and Characteristics of Patients Who Initiate Biologics for Severe Asthma in Japan
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J. Harvey, S. Zhang, G. Mu, S. Valliant, R. Alfonso Cristancho, T. Ishii, T. Suzuki, H. Kunishige, and R. Jakes
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- 2023
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4. Blood Eosinophil and IgE Levels at Initiation of Biologics for the Treatment of Severe Asthma, a Perspective From US, EU-4, and UK
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S. Valliant, J. Harvey, S. Zhang, G. Mu, R. Jakes, K. Emeanuru, K. Brunini Pitta Palhares, M. Andre, and R. Alfonso Cristancho
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- 2023
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5. Mepolizumab effectiveness in severe asthma supported by federated analysis of European SHARP data
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J A Kroes, R Alfonso-Cristancho, A T Bansal, E Berret, K Bieksiene, A Bourdin, L Brussino, D Canhoto, C Cardini, G Celik, Z Csoma, B Dahlén, E Damadoğlu, K Eger, L Gauquelin, B Gemicioglu, O Goksel, S Graff, E Heffler, H B Hofstee, P Howarth, R Jakes, F Jaun, V Kalinauskaite-Zukauske, P Kopač, N Kwon, C C Loureiro, V Lozoya García, M Masoli, M Paula Rezelj, L Pérez De Llano, S Popović-Grle, D Ramos-Barbon, A Sà Sousa, K Samitas, F Schleich, C Sirena, S Skrgat, E Zervas, G Zichnalis, E H Bel, J K Sont, S Hashimoto, and A Ten Brinke
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- 2022
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6. Characterisation and burden of eosinophilic granulomatosis with polyangiitis: a European retrospective study
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R Jakes, N Kwon, L Huynh, J Hwee, L Baylis, R Alfonso-Cristancho, S Du, A Khanal, and M S Duh
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- 2022
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7. HSD58 Country Differences in the Clinical Manifestations and Treatment Patterns of Patients With Eosinophilic Granulomatosis With Polyangiitis (EGPA): A European Perspective
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R Jakes, N Kwon, L Huynh, J Hwee, L Baylis, R Alfonso-Cristancho, S Du, A Khanal, and MS Duh
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Health Policy ,Public Health, Environmental and Occupational Health - Published
- 2022
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8. EE607 Healthcare Utilisation of Patients With Eosinophilic Granulomatosis With Polyangiitis (EGPA): A European Perspective
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R Jakes, N Kwon, L Huynh, J Hwee, L Baylis, R Alfonso-Cristancho, S Du, A Khanal, and MS Duh
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Health Policy ,Public Health, Environmental and Occupational Health - Published
- 2022
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9. Influence des IgE totales à l’inclusion et des antécédents d’utilisation d’omalizumab sur l’impact du mépolizumab sur la réduction du taux d’exacerbations sévères de l’asthme : résultats de l’étude REALITI-A en vie réelle
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J. Kihyuk Lee, S. Pollard, M.C. Liu, F. Schleiich, G. Pelaiade, C. Almonacid, L.G. Heaney, R. Chaudhuri, R. Alfonso-Cristancho, R. Jakes, R. Price, A. Maxwell, P. Howarth, and S. Hu
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Immunology and Allergy - Published
- 2022
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10. How Real-World Mepolizumab Users in the REALITI-A Study Relate to the Recruitment Criteria Applied in the Randomized, Placebo-Controlled Trials of Subcutaneous Mepolizumab in Severe Eosinophilic Asthma
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D. Ramos-Barbon, R. Bals, N. Crimi, D. Menzies, B. Pek, C. Pilette, G. Steven, R. Alfonso-Cristancho, R. Jakes, A.C. Maxwell, R.G. Price, S. Yang, and P. Howarth
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- 2021
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11. POS0320 EPIDEMIOLOGY AND HEALTHCARE RESOURCE UTILIZATION OF PATIENTS WITH EGPA IN THE UNITED KINGDOM
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J. Hwee, Q. Fu, L. Harper, K. Nirantharakumar, R. Goel, and R. Jakes
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Rheumatology ,Immunology ,Immunology and Allergy ,General Biochemistry, Genetics and Molecular Biology - Abstract
BackgroundEosinophilic granulomatosis with polyangiitis (EGPA) is characterized by eosinophilic inflammation of small with or without medium arteries. EGPA is a rare disease with varying prevalence and incidence rates globally. To date, limited information is available on the prevalence, incidence and burden of disease in the United Kingdom (UK).ObjectivesThe objectives were to estimate the prevalence and incidence of EGPA, and to describe the healthcare resource utilization (HCRU) among patients with EGPA in the UK.MethodsThis retrospective database study used the UK-based Clinical Practice Research Datalink (CPRD)-AURUM database linked to the Hospital Episode Statistics (HES). Prevalence was estimated from 2005 to 2019, and incidence was estimated from 2006 to 2019. HCRU was assessed in the 12-months following the first recorded diagnosis of EGPA (index date), and included hospitalizations, emergency room visits, procedures, outpatient specialist visits, primary care visits, and oral corticosteroid use.Results764 people were identified with EGPA in the UK. The prevalence of EGPA, reported in the database, increased from 22.7 to 45.6 per 1,000,000 persons from 2005 to 2019 (Figure 1), whereas the incidence of EGPA from 2006 to 2019 ranged from 2.28 to 4.00 per 1,000,000 person-years. 377 patients with EGPA were successfully linked to the CPRD-HES database. Patient characteristics were as follows: mean age (SD) was 57 years (14.2); 49% were male; 81% had asthma; and 11% had peripheral neuropathy prior to the index date. For patients with EGPA, 19% had an EGPA-related hospitalization and 50% had any-cause hospitalization within 1 year of the index date (Table 1). The mean length of stay was, 18 days and 16 days for EGPA-related and any-cause hospitalizations, respectively. 52% of patients with EGPA had undergone a medical procedure, 89% of patients with EGPA had an outpatient visit to a specialist. Almost all patients with EGPA visited a general practitioner within 1 year of their EGPA diagnosis (97%) and averaged 16.0 visits in 1 year. A significant proportion of the EGPA population were prescribed OCS; most EGPA patients had a prescription in the 0–3 months after the index date (64%), and patients on average had a prescription for OCS for 6 out of the 12 months after the index date.Table 1.HCRU among patients with EGPAHCRUNumber of patients N (%) [total days]Number of events per patient, Mean (SD)Total EGPA cohort (N)377 EGPA-specific hospitalizations72 (19.10)1.2 (1) EGPA-specific hospitalizations length of stay[1283]17.8 (23.3) Any-cause hospitalizations188 (49.87)1.7 (1) Any-cause hospitalizations length of stay[2992]15.9 (23.7) Any-cause A & E events19 (5.04)1.8 (2) Any-cause outpatient visits334 (88.59)9.8 (7) Any procedures undertaken196 (51.99)6.8 (6) General Practitioner visits366 (97.08)16.0 (11)A&E, Accident and Emergency; EGPA, eosinophilic granulomatosis with polyangiitis; HCRU, healthcare resource utilization.Figure 1.Prevalence of EGPA in the UK from 2005 to 2019Prevalence is expressed as cases per 1,000,000 persons. EGPA, eosinophilic granulomatosis with polyangiitis; UK, United Kingdom.ConclusionThe prevalence of EGPA increased over the study period in the UK, and the data show significant HCRU within 1 year of the first recorded diagnosis of EGPA. Almost all of the patients with EGPA were found to frequently visit the primary care physician and seek specialist care, and almost half required hospitalization. Funding: GSK [207888]AcknowledgementsFunding: GSK [207888]Disclosure of InterestsJeremiah Hwee Shareholder of: GSK, Employee of: GSK, Qinggong Fu Shareholder of: GSK, Employee of: GSK, Lorraine Harper Speakers bureau: Viopharm (2021), Roche (2017), Consultant of: GSK (2021), Viopharm (2021), Grant/research support from: Viopharm (researcher initiated project), MSD (researcher initiated project), Krishnarajah Nirantharakumar Consultant of: Boehringer Ingelheim (Consultancy on real world evidence), Grant/research support from: AstraZeneca, Vifor and Boehringer Ingelheim (Investigator led grants), Ruchika Goel: None declared, Rupert Jakes Shareholder of: GSK, Employee of: GSK
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- 2022
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12. L’impact de la fraction exhalée de l’oxyde nitrique (NO) et du taux d’éosinophiles sanguin à l’inclusion sur les résultats cliniques dans REALITI-A
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D. Bernstein, M.C. Liu, F. Schleich, J.K. Lee, G. Pelaia, A. Sanchez, R. Chaudhuri, R. Alfonso-Cristancho, R. Jakes, R. Price, A. Maxwell, P. Howarth, and C. Picaud
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Immunology and Allergy - Published
- 2022
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13. Le bénéfice clinique du traitement par mépolizumab est indépendant de l’utilisation initiale de corticostéroïdes oraux : résultats de l’étude de vraie vie REALITI-A
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M.C. Liu, F. Schleich, J. Kiihyuk Lee, G. Pelaia, C. Almonacid Sanchez, L.G. Heaney, R. Alfonso-Cristancho, R. Jakes, R. Price, A. Maxwell, P. Howarth, and S. Seydoux-Chemla
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Immunology and Allergy - Published
- 2022
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14. Étude prospective internationale en vie réelle du mépolizumab chez les patients souffrant d’asthme sévère à un an: REALITI-A
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C. Pilette, G.W. Canonica, R. Chaudhuri, F.E.H. Lee, J.K. Lee, C. Almonacid Sanchez, R. Alfonso-Cristancho, R. Jakes, A. Maxwell, R. Price, P. Howarth, and S. Chemla Seydoux
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Pulmonary and Respiratory Medicine - Published
- 2022
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15. P270 Is the CTS5 a helpful decision-making tool in the extended adjuvant therapy setting?
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K. Wimmer, D. Hlauschek, M. Balic, G. Pfeiler, S. Strobl-Kacerovsky, R. Greil, C.F. Singer, S. Halper, G. Steger, C. Suppan, S.P. Gampenrieder, R. Helfgott, D. Egle, M. Filipits, R. Jakesz, L. Sölkner, C. Fesl, M. Gnant, and F. Fitzal
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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16. α-Synuclein in filamentous inclusions of Lewy bodies from Parkinson’s disease and dementia with Lewy bodies
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Maria Grazia Spillantini, Michel Goedert, Masato Hasegawa, R. Jakes, and R.A. Crowther
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Pathology ,medicine.medical_specialty ,Parkinson's disease ,Immunoelectron microscopy ,Synucleins ,Nerve Tissue Proteins ,chemistry.chemical_compound ,medicine ,Humans ,Alpha-synuclein ,Synucleinopathies ,Multidisciplinary ,Lewy body ,Chemistry ,Dementia with Lewy bodies ,Brain ,Parkinson Disease ,Anatomy ,Biological Sciences ,medicine.disease ,Immunohistochemistry ,nervous system diseases ,alpha-Synuclein ,Synuclein ,Dementia ,Lewy Bodies ,Autopsy ,Beta-synuclein - Abstract
Lewy bodies and Lewy neurites are the defining neuropathological characteristics of Parkinson's disease and dementia with Lewy bodies. They are made of abnormal filamentous assemblies of unknown composition. We show here that Lewy bodies and Lewy neurites from Parkinson's disease and dementia with Lewy bodies are stained strongly by antibodies directed against amino-terminal and carboxyl-terminal sequences of alpha-synuclein, showing the presence of full-length or close to full-length alpha-synuclein. The number of alpha-synuclein-stained structures exceeded that immunoreactive for ubiquitin, which is currently the most sensitive marker of Lewy bodies and Lewy neurites. Staining for alpha-synuclein thus will replace staining for ubiquitin as the preferred method for detecting Lewy bodies and Lewy neurites. We have isolated Lewy body filaments by a method used for the extraction of paired helical filaments from Alzheimer's disease brain. By immunoelectron microscopy, extracted filaments were labeled strongly by anti-alpha-synuclein antibodies. The morphologies of the 5- to 10-nm filaments and their staining characteristics suggest that extended alpha-synuclein molecules run parallel to the filament axis and that the filaments are polar structures. These findings indicate that alpha-synuclein forms the major filamentous component of Lewy bodies and Lewy neurites.
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- 1998
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17. [Untitled]
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Aaron Klug, R.A. Crowther, Masato Hasegawa, R. Jakes, Maria Grazia Spillantini, and Michel Goedert
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Pathology ,medicine.medical_specialty ,Text mining ,business.industry ,Genetics ,Medicine ,Disease ,Dissection (medical) ,business ,medicine.disease ,Molecular Biology ,Biochemistry - Published
- 1996
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18. Somatodendritic localization and hyperphosphorylation of tau protein in transgenic mice expressing the longest human brain tau isoform
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Michel Goedert, Jürgen Götz, T Schäfer, Maria Grazia Spillantini, R. Jakes, Kurt Bürki, and Alphonse Probst
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Gene isoform ,DNA, Complementary ,Microtubule-associated protein ,Transgene ,Molecular Sequence Data ,Tau protein ,Hyperphosphorylation ,Mice, Inbred Strains ,Mice, Transgenic ,tau Proteins ,Polymerase Chain Reaction ,General Biochemistry, Genetics and Molecular Biology ,Mice ,Alzheimer Disease ,Reference Values ,GSK-3 ,Consensus Sequence ,medicine ,Animals ,Humans ,Phosphorylation ,Promoter Regions, Genetic ,Molecular Biology ,In Situ Hybridization ,DNA Primers ,Neurons ,Base Sequence ,General Immunology and Microbiology ,biology ,General Neuroscience ,Brain ,Dendrites ,Human brain ,medicine.disease ,Immunohistochemistry ,Molecular biology ,Axons ,medicine.anatomical_structure ,biology.protein ,Alzheimer's disease ,Research Article - Abstract
Microtubule-associated protein tau is the major constituent of the paired helical filament, the main fibrous component of the neurofibrillary lesions of Alzheimer's disease. Tau is an axonal phosphoprotein in normal adult brain. In Alzheimer's disease brain tau is hyperphosphorylated and is found not only in axons, but also in cell bodies and dendrites of affected nerve cells. We report the production and analysis of transgenic mice that express the longest human brain tau isoform under the control of the human Thy-1 promoter. As in Alzheimer's disease, transgenic human tau protein was present in nerve cell bodies, axons and dendrites; moreover, it was phosphorylated at sites that are hyperphosphorylated in paired helical filaments. We conclude that transgenic human tau protein showed pre-tangle changes similar to those that precede the full neurofibrillary pathology in Alzheimer's disease.
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- 1995
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19. Isoform-specific interactions of apolipoprotein E with the microtubule-associated protein MAP2c: implications for Alzheimer's disease
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R. Jakes, Margaret A. Pericak-Vance, Donald E. Schmechel, Ann M. Saunders, Craig C. Garner, David Huang, Michel Goedert, Warren J. Strittmatter, Allen D. Roses, and Karl H. Weisgraber
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Gene isoform ,Apolipoprotein E ,Microtubule-associated protein ,General Neuroscience ,Apolipoprotein E4 ,Osmolar Concentration ,Apolipoprotein E3 ,Biology ,medicine.disease ,Rats ,Cell biology ,Pathogenesis ,Apolipoproteins E ,Isomerism ,Alzheimer Disease ,Microtubule ,Immunology ,medicine ,Animals ,lipids (amino acids, peptides, and proteins) ,Alzheimer's disease ,Cytoskeleton ,Microtubule-Associated Proteins ,Intracellular - Abstract
The apolipoprotein E type 4 allele is a susceptibility gene for late-onset Alzheimer's disease. Apolipoprotein E is found in neurons, some of which contain paired helical filaments made of the microtubule-associated protein τ. Previous studies have demonstrated that the apoE3 isoform, but not the apoE4 isoform, binds τ with high avidity. Because the microtubule-associated protein MAP2c also effects microtubule assembly and stability, we examined interactions between apoE isoforms and MAP2c. Similar to the τ-binding results, apoE3, but not apoE4, bound MAP2c. Binding was detectable down to 10 −9 M MAP2c and 10 −8 M apoE3. Isoform-specific interactions of apoE with the microtubule-associated proteins MAP2c and τ might affect intracellular maintenance of microtubules and could contribute to a time-dependent pathogenesis of Alzheimer's disease.
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- 1994
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20. Parkinson's Disease, Dementia with Lewy Bodies, and Multiple System Atrophy as α-Synucleinopathies
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M, Goedert, R, Jakes, R, Anthony Crowther, and M, Grazia Spillantini
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Parkinson's disease (PD) is the most common neurodegenerative movement disorder (1). Neuropathologically, it is defined by nerve cell loss in the substantia nigra and the presence of Lewy bodies and Lewy neurites (2,3). In many cases, Lewy bodies are also found in the dorsal motor nucleus of the vagus, the nucleus basalis of Meynert, the locus coeruleus, the raphe nuclei, the midbrain Edinger-Westphal nucleus, the cerebral cortex, the olfactory bulb, and some autonomic ganglia (4).
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- 2011
21. Parkinson's Disease, Dementia with Lewy Bodies, and Multiple System Atrophy as α-Synucleinopathies
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Michel Goedert, R. Jakes, Grazia Spillantini M, and Anthony Crowther R
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Synucleinopathies ,Parkinson's disease ,business.industry ,Dementia with Lewy bodies ,Substantia nigra ,medicine.disease ,Nucleus basalis ,medicine.anatomical_structure ,Dorsal motor nucleus ,nervous system ,Cerebral cortex ,medicine ,Locus coeruleus ,business ,Neuroscience - Abstract
Parkinson's disease (PD) is the most common neurodegenerative movement disorder (1). Neuropathologically, it is defined by nerve cell loss in the substantia nigra and the presence of Lewy bodies and Lewy neurites (2,3). In many cases, Lewy bodies are also found in the dorsal motor nucleus of the vagus, the nucleus basalis of Meynert, the locus coeruleus, the raphe nuclei, the midbrain Edinger-Westphal nucleus, the cerebral cortex, the olfactory bulb, and some autonomic ganglia (4).
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- 2003
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22. Fiber diffraction of synthetic alpha-synuclein filaments shows amyloid-like cross-beta conformation
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R.A. Crowther, John A. Berriman, Michel Goedert, R. Jakes, and Louise C. Serpell
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Circular dichroism ,Amyloid ,Protein Conformation ,animal diseases ,Synucleins ,Nerve Tissue Proteins ,Biology ,Songbirds ,chemistry.chemical_compound ,Protein structure ,gamma-Synuclein ,X-Ray Diffraction ,mental disorders ,medicine ,Animals ,Humans ,Protein secondary structure ,Zebra finch ,Alpha-synuclein ,Multidisciplinary ,Dementia with Lewy bodies ,Circular Dichroism ,Biological Sciences ,medicine.disease ,Phosphoproteins ,Recombinant Proteins ,nervous system diseases ,Rats ,Microscopy, Electron ,chemistry ,Biochemistry ,nervous system ,Biophysics ,alpha-Synuclein ,Fiber diffraction - Abstract
Filamentous inclusions made of alpha-synuclein constitute the defining neuropathological characteristic of Parkinson's disease, dementia with Lewy bodies, and multiple system atrophy. Rare familial cases of Parkinson's disease are associated with mutations A53T and A30P in alpha-synuclein. We report here the assembly properties and secondary structure characteristics of recombinant alpha-synuclein. Carboxy-terminally truncated human alpha-synuclein (1-87) and (1-120) showed the fastest rates of assembly, followed by human A53T alpha-synuclein, and rat and zebra finch alpha-synuclein. Wild-type human alpha-synuclein and the A30P mutant showed slower rates of assembly. Upon shaking, filaments formed within 48 h at 37 degrees C. The related proteins beta- and gamma-synuclein only assembled after several weeks of incubation. Synthetic human alpha-synuclein filaments were decorated by an antibody directed against the carboxy-terminal 10 amino acids of alpha-synuclein, as were filaments extracted from dementia with Lewy bodies and multiple system atrophy brains. Circular dichroism spectroscopy indicated that alpha-synuclein undergoes a conformational change from random coil to beta-sheet structure during assembly. X-ray diffraction and electron diffraction of the alpha-synuclein assemblies showed a cross-beta conformation characteristic of amyloid.
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- 2000
23. A panel of epitope-specific antibodies detects protein domains distributed throughout human alpha-synuclein in Lewy bodies of Parkinson's disease
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B I, Giasson, R, Jakes, M, Goedert, J E, Duda, S, Leight, J Q, Trojanowski, and V M, Lee
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Male ,Synucleins ,Antibodies, Monoclonal ,Nerve Tissue Proteins ,Parkinson Disease ,Cross Reactions ,Substantia Nigra ,Antibody Specificity ,alpha-Synuclein ,Animals ,Humans ,Lewy Bodies ,Epitope Mapping ,Aged - Abstract
To facilitate studies of the normal biology of alpha-synuclein, a member of a family of neuronal proteins of unknown function, and to elucidate the role of alpha-synuclein pathologies in neurodegenerative diseases, we generated and characterized a panel of anti-synuclein antibodies. Here we demonstrate that these antibodies recognize defined epitopes spanning the entire length of human alpha-synuclein, and that some of these antibodies also cross-react with zebra finch and rodent synucleins. Since alpha-synuclein has been reported to be a major component of Lewy bodies (LBs) in Parkinson's disease (PD), dementia with LBs and common variants of Alzheimer's disease, we performed immunohistochemical studies showing that these antibodies label numerous LBs in the PD substantia nigra, thereby localizing protein domains throughout human alpha-synuclein in LBs. Taken together, our data indicate that this panel of antibodies can be exploited to probe the normal biology of alpha-synuclein as well as the role of pathological forms of this protein in PD and related neurodegenerative synucleinopathies.
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- 2000
24. Activation of the novel MAP kinase homologue SAPK4 by cytokines and cellular stresses is mediated by SKK3 (MKK6)
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A, Cuenda, M, Goedert, M, Craxton, R, Jakes, and P, Cohen
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MAP Kinase Kinase 6 ,Transfection ,KB Cells ,Recombinant Proteins ,Cell Line ,Enzyme Activation ,Kinetics ,Mitogen-Activated Protein Kinase 13 ,Pituitary Gland ,Calcium-Calmodulin-Dependent Protein Kinases ,Humans ,Cloning, Molecular ,Mitogen-Activated Protein Kinases ,Phosphorylation ,Protein Kinases - Published
- 1998
25. Alzheimer-like changes in microtubule-associated protein Tau induced by sulfated glycosaminoglycans. Inhibition of microtubule binding, stimulation of phosphorylation, and filament assembly depend on the degree of sulfation
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M, Hasegawa, R A, Crowther, R, Jakes, and M, Goedert
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Heparin ,Protein Conformation ,Sulfates ,Cyclin-Dependent Kinase 5 ,Neurofibrillary Tangles ,tau Proteins ,DNA ,Protein Serine-Threonine Kinases ,Microtubules ,Cyclin-Dependent Kinases ,Glycogen Synthase Kinase 3 ,Alzheimer Disease ,Calcium-Calmodulin-Dependent Protein Kinases ,Humans ,RNA ,Heparitin Sulfate ,Phosphorylation ,Glycosaminoglycans - Abstract
Hyperphosphorylated microtubule-associated protein tau is the major proteinaceous component of the paired helical and straight filaments which constitute a defining neuropathological characteristic of Alzheimer's disease and a number of other neurodegenerative disorders. We have recently shown that full-length recombinant tau assembles into Alzheimer-like filaments upon incubation with heparin. Heparin also promotes phosphorylation of tau by a number of protein kinases, prevents tau from binding to taxol-stabilized microtubules, and produces rapid disassembly of microtubules assembled from tau and tubulin. Here, we have used the above parameters to study the interactions between tau protein and a number of naturally occurring and synthetic glycosaminoglycans. We show that the magnitude of the glycosaminoglycan effects is proportional to their degree of sulfation. Thus, the strongly sulfated glycosaminoglycans dextran sulfate, pentosan polysulfate, and heparin were the most potent, whereas the non-sulfated dextran and hyaluronic acid were without effect. The moderately sulfated glycosaminoglycans heparan sulfate, chondroitin sulfate, and dermatan sulfate had intermediate effects, whereas keratan sulfate had little or no effect. These in vitro interactions between tau protein and sulfated glycosaminoglycans reproduced the known characteristics of paired helical filament-tau from Alzheimer's disease brain. Sulfated glycosaminoglycans are present in nerve cells in Alzheimer's disease brain in the early stages of neurofibrillary degeneration, suggesting that their interactions with tau may constitute a central event in the development of the neuronal pathology of Alzheimer's disease.
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- 1998
26. Alpha-synuclein in Lewy bodies
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M G, Spillantini, M L, Schmidt, V M, Lee, J Q, Trojanowski, R, Jakes, and M, Goedert
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Synucleins ,alpha-Synuclein ,Humans ,Lewy Bodies ,Nerve Tissue Proteins ,Parkinson Disease ,Immunohistochemistry - Published
- 1997
27. Short-course adjuvant chemotherapy in high-risk stage I nonseminomatous germ cell tumors of the testis: a Medical Research Council report
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Michael Cullen, Stan B. Kaye, M. V. Williams, S. J. Harland, S. P. Stenning, M. C. Parkinson, Alan Horwich, R Jakes, and Sophie D. Fosså
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Oncology ,Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Time Factors ,medicine.medical_treatment ,Dysgerminoma ,Drug Administration Schedule ,Bleomycin ,Testicular Neoplasms ,Risk Factors ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Humans ,Neoplasm Invasiveness ,Etoposide ,Testicular cancer ,Neoplasm Staging ,Cisplatin ,Chemotherapy ,business.industry ,medicine.disease ,Prognosis ,Surgery ,Treatment Outcome ,Chemotherapy, Adjuvant ,Histopathology ,Teratoma ,Germ cell tumors ,business ,Stage I Testicular Cancer ,Orchiectomy ,medicine.drug - Abstract
PURPOSE This United Kingdom Medical Research Council (UK-MRC) study prospectively evaluated efficacy and long-term toxicity of adjuvant chemotherapy in high-risk stage I nonseminomatous germ cell tumors of the testis (NSGCTT). PATIENTS AND METHODS Eligible patients were those identified by the local histopathologist as having features confirmed in MRC surveillance studies to indicate an approximate 50% risk of relapse. Central histopathology review was undertaken. Chemotherapy consisted of two courses of cisplatin 100 mg/m2, bleomycin 30 mg weekly x 3, and etoposide 120 mg/m2 x 3, every 21 days (BEP). RESULTS One hundred fourteen eligible cases were enrolled. Median time of follow-up was 4 years, with 93 patients followed-up for at least 2 years. There have been two relapses, including one patient who did not have a germ cell tumor (GCT), according to the reference histopathologist. This patient is alive with active disease, the other has died. There was one death after a cerebrovascular accident during treatment. Assessment of fertility, lung function, and audiometry pretreatment and more than 9 months posttreatment indicated no clinically significant changes. A mean decrease in transfer factor coefficient (KCO) of 15% of the predicted value was noted, but no patient had symptomatic respiratory dysfunction. CONCLUSION There have been only two relapses among 114 cases of high-risk stage I NSGCTT treated with two courses of adjuvant BEP chemotherapy. The 95% confidence interval (CI) excludes a true relapse rate of more than 5%. Of 104 patients confirmed on histopathology review to have GCT, there has been only one relapse. Adjuvant chemotherapy is free from significant long-term toxicity, offering an effective alternative to surveillance or retroperitoneal lymph node dissection (RPLND) followed by surveillance, and may be preferred by some patients.
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- 1996
28. Molecular dissection of the neurofibrillary lesions of Alzheimer's disease
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M, Goedert, M G, Spillantini, M, Hasegawa, R, Jakes, R A, Crowther, and A, Klug
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Alzheimer Disease ,Humans ,Neurofibrillary Tangles ,tau Proteins ,Molecular Biology - Published
- 1996
29. Isoform-specific interactions of apolipoprotein E with microtubule-associated protein tau: implications for Alzheimer disease
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R. Jakes, Donald E. Schmechel, Michel Goedert, David Huang, Warren J. Strittmatter, Li Ming Dong, Allen D. Roses, Karl H. Weisgraber, Margaret A. Pericak-Vance, and Ann M. Saunders
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Gene isoform ,Apolipoprotein E ,Tau protein ,tau Proteins ,Plasma protein binding ,In Vitro Techniques ,Apolipoproteins E ,Alzheimer Disease ,mental disorders ,medicine ,Humans ,Binding site ,Multidisciplinary ,Binding Sites ,biology ,Chemistry ,medicine.disease ,Phosphoproteins ,Recombinant Proteins ,Cell biology ,Biochemistry ,biology.protein ,lipids (amino acids, peptides, and proteins) ,Alzheimer's disease ,Lipoprotein ,Research Article ,Protein Binding - Abstract
The apolipoprotein E (apoE) type 4 allele (APOE4) is a susceptibility gene for late-onset familial and sporadic Alzheimer disease. ApoE is found in some neurofibrillary tangle-bearing neurons, one of the major pathologic hallmarks of the disease. Neurofibrillary tangles contain paired helical filaments formed from hyperphosphorylated microtubule-associated protein tau. In vitro, tau binds avidly to apoE3, but not to apoE4, forming a bimolecular complex. Tau phosphorylated with a brain extract does not bind either isoform. ApoE3 binds to the microtubule-binding repeat region of tau, which is also the region that is thought to cause self-assembly into the paired helical filament. Binding studies with fragments of ApoE demonstrate that the tau-binding region of apoE3 corresponds to its receptor-binding domain and is distinct from the region that binds lipoprotein particles or beta/A4 peptide. Isoform-specific interactions of apoE with tau may regulate intraneuronal tau metabolism in Alzheimer disease and alter the rate of formation of paired helical filaments and neurofibrillary tangles.
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- 1994
30. Hypothesis: microtubule instability and paired helical filament formation in the Alzheimer disease brain are related to apolipoprotein E genotype
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Warren J. Strittmatter, Li Ming Dong, Allen D. Roses, Donald E. Schmechel, Michel Goedert, David Huang, R. Jakes, John R. Gilbert, Karl H. Weisgraber, Gillian Einstein, Elizabeth H. Corder, Margaret A. Pericak-Vance, Seol Heui Han, Ann M. Saunders, Mark J. Alberts, and Christine M. Hulette
- Subjects
Apolipoprotein E ,Apolipoprotein B ,Microtubule-associated protein ,Genetic Linkage ,Tau protein ,Apolipoprotein E4 ,tau Proteins ,Microtubules ,Chromosomes ,Degenerative disease ,Apolipoproteins E ,Developmental Neuroscience ,Microtubule ,Alzheimer Disease ,mental disorders ,medicine ,Humans ,Allele ,Phosphorylation ,Amyloid beta-Peptides ,biology ,Neurofibrillary Tangles ,medicine.disease ,Neurology ,biology.protein ,lipids (amino acids, peptides, and proteins) ,Alzheimer's disease ,Neuroscience - Abstract
A genetic classification of Alzheimer disease(s) (AD) is presented. We describe a potential metabolic process in individuals who inherit apolipoprotein E-epsilon 4 (APOE4, gene; apoE4, protein) alleles, leading to increased risk and earlier age of onset of late-onset Alzheimer disease. Apolipoprotein E-epsilon 3 (apoE3) binds to tau protein, possibly slowing the initial rate of tau phosphorylation and self-assembly into paired helical filaments (PHFs); apoE4 does not bind tau. Tau promotes microtubule assembly and stabilizes microtubules; hyperphosphorylated tau does not bind, thereby destabilizing microtubules. Hyperphosphorylated tau may self-assemble into PHFs. Over time a bias toward destabilization of microtubules and the formation of neurofibrillary tangles may occur in individuals who inherit APOE4 alleles, leading to a shorter functional neuronal life span. This hypothesis focuses attention on two important aspects of AD research design: (1) Although the inheritance of APOE4 is associated with increased risk and decreased age of onset, apoE4 does not directly cause the disease. Our data point to the absence of an important function of apoE3 or apoE2 in individuals who do not inherit these alleles as the genetically relevant metabolic factor. This has important implications for design of experiments directed toward understanding the relevant neuronal metabolism. (2) Should this hypothesis be proven and confirmed, targets for pharmaceutical therapy designed to mimic the metabolic function of apoE3 or apoE2 become a realistic preventive strategy.
- Published
- 1994
31. The abnormal phosphorylation of tau protein at Ser-202 in Alzheimer disease recapitulates phosphorylation during development
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U. Lübke, Michel Goedert, Virginia M.-Y. Lee, Marc Vandermeeren, R.A. Crowther, John Q. Trojanowski, R. Jakes, Patrick Cras, and Jan Six
- Subjects
Gene isoform ,inorganic chemicals ,Adult ,Aging ,Tau protein ,Restriction Mapping ,tau Proteins ,macromolecular substances ,Biology ,Serine ,Fetus ,Alzheimer Disease ,mental disorders ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Phosphorylation ,Cerebral Cortex ,Multidisciplinary ,Infant, Newborn ,Brain ,Neurofibrillary tangle ,Anatomy ,Human brain ,medicine.disease ,Recombinant Proteins ,Cell biology ,Rats ,enzymes and coenzymes (carbohydrates) ,medicine.anatomical_structure ,Phosphoprotein ,biology.protein ,Mutagenesis, Site-Directed ,bacteria ,Alzheimer's disease ,Protein Kinases ,Research Article - Abstract
Tau is a neuronal phosphoprotein whose expression is developmentally regulated. A single tau isoform is expressed in fetal human brain but six isoforms are expressed in adult brain, with the fetal isoform corresponding to the shortest of the adult isoforms. Phosphorylation of tau is also developmentally regulated, as fetal tau is phosphorylated at more sites than adult tau. In Alzheimer disease, the six adult tau isoforms become abnormally phosphorylated and form the paired helical filament, the major fibrous component of the characteristic neurofibrillary lesions. We show here that Ser-202 (in the numbering of the longest human brain tau isoform) is a phosphorylation site that distinguishes fetal from adult tau and we identify it as one of the abnormal phosphorylation sites in Alzheimer disease. The abnormal phosphorylation of tau at Ser-202 in Alzheimer disease thus recapitulates normal phosphorylation during development.
- Published
- 1993
32. Erste Ergebnisse einer multimodalen Behandlung des Pankreaskarzinoms
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C. Zielinski, Günther G. Steger, Reinhold Függer, P. Wamser, R. Jakes, and Thomas Sautner
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Gynecology ,medicine.medical_specialty ,business.industry ,Medicine ,Surgery ,Vascular surgery ,business ,Abdominal surgery ,Cardiac surgery - Abstract
Es handelt sich bei den beschriebenen Fatienten um Einzelkasuistiken. Eine Einschatzung der Prognose der operierten Patienten oder der Wertigkeit des Verfahrens ist aufgrund der kurzen Beobachtungszeit und der geringen Patientenzahl noch nicht moglich.
- Published
- 1998
- Full Text
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33. 303 Molecular dissection of the paired helical filament
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M. Goedert, R.A. Crowther, M. Hasegawa, R. Jakes, M.J. Smith, and M.G. Svillantini
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Aging ,General Neuroscience ,Neurology (clinical) ,Geriatrics and Gerontology ,Developmental Biology - Published
- 1996
- Full Text
- View/download PDF
34. 902 Optimal field size in adjuvant treatment of stage I seminoma
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J.P. Roberts, Sophie D. Fosså, R. Jakes, J.M. Russel, and Alan Horwich
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Cancer Research ,medicine.medical_specialty ,Lymph node drainage ,business.industry ,medicine.medical_treatment ,Seminoma ,medicine.disease ,Surgery ,Radiation therapy ,Oncology ,Stage I Seminoma ,medicine ,Field size ,Orchiectomy ,Lymph ,business ,Adjuvant - Abstract
From 7/1989 to 5/1993478 men with seminoma stage I (Tl–T3; no ipsilateral inguinal operation prior to orchiectomy) have been included in a phase III study assessing the field size of abdominal radiotherapy (30 Gy/3 wks). Group 1: paraaortic (p.a.) field from Thll to L5, the lateral borders including the processus transversi. Group 2: “dog-leg field” (p.a. + ipsilateral iliac field to the mid obturator level). Results With a median follow-up time of 29 months, 114 relapses have occurred, two of them within the pelvic area (2 years relapse-free survival 97%; 95% C.I./96%, 99%). Relapses were diagnosed between 4 months and 3 years from start of radiotherapy. Acute grade ≥3 gastrointestinal toxicity was observed in 11% and 17% of the patients with p.a. and dog-leg field, respectively. In Group I grade ≥2 myelotoxicity occurred in 5% of the patients and in 13% ofthe patients from Group 2.8 patients developed peptic ulcer after radiotherapy. After 1 year 11% patients in Group 1 and 30% of those in Group 2 were azoospermic. Conclusions In patients with seminoma stage I (T1–T3) and with undisturbed lymph node drainage of the primary tumour adjuvant radiotherapy to the p.a. lymph nodes is associated with reduced gastrointestinal, haematological and gonadal toxicity compared to standard pelvic + p.a. irradiation. The recurrence rate is low with either field.
- Published
- 1995
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35. Apolipoprotein E-e4 and apolipoprotein E-e2 are susceptibility genes that affect the rate of disease expressivity of late-onset familial and sporadic Alzheimer disease
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Warren J. Strittmatter, Karl H. Weisgraber, A. D. Roses, Seol Heui Han, Jonathan L. Haines, David Huang, Ann M. Saunders, Donald E. Schmechel, Christine M. Hulette, R. Jakes, Michel Goedert, Neil Risch, Gillian Einstein, M. Holsti, Elizabeth H. Corder, Margaret A. Pericak-Vance, and L.-M. Dong
- Subjects
Genetics ,Apolipoprotein E ,business.industry ,Late onset ,Susceptibility gene ,Disease ,medicine.disease ,Affect (psychology) ,Neurology ,medicine ,Neurology (clinical) ,Expressivity (genetics) ,Alzheimer's disease ,business - Published
- 1994
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- View/download PDF
36. Studies in the Respiratory and Carbohydrate Metabolism of Plant Tissues2
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M. E. Younis, R. Jakes, F. A. Isherwood, T. Solomos, and Jonathan Barker
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Biochemistry ,Physiology ,Chemistry ,Plant Science ,Respiratory system ,Carbohydrate metabolism - Published
- 1964
- Full Text
- View/download PDF
37. Phosphorylation site sequence of smooth muscle myosin light chain (Mr = 20 000)
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R. Jakes, M. John, J. Kendrick-Jones, Bruce E. Kemp, and Richard B. Pearson
- Subjects
Phosphopeptides ,Myosin light-chain kinase ,Phosphorylation sites ,Biophysics ,Myosin ,Biology ,Myosins ,Immunoglobulin light chain ,Biochemistry ,Homology (biology) ,Protein kinase ,Species Specificity ,Structural Biology ,Genetics ,medicine ,Animals ,Trypsin ,Amino Acid Sequence ,Phosphorylation ,Protein kinase A ,Molecular Biology ,Peptide sequence ,Myosin-Light-Chain Kinase ,Skeletal muscle ,Cell Biology ,Molecular biology ,Peptide Fragments ,Molecular Weight ,medicine.anatomical_structure ,Organ Specificity ,Gizzard, Avian ,Specificity ,Chickens ,Protein Kinases - Abstract
The amino terminal sequence of the myosin light chain ( M r = 20 000) isolated from chicken gizzards was found to be acetyl-Ser-Ser-Lys-Arg-Ala-Lys-Ala-Lys-Thr-Thr-Lys-Lys-Arg-Pro-Gln-Arg-Ala-Thr-Ser(P)-Asn-Val-Phe. This sequence assignment differs from that reported by Maita et al. [(1981) European J. Biochem. 117, 417] in the order of the tryptic peptides. The revised amino acid sequence exhibits greater homology with the phosphorylation site sequences of the regulatory light chains from cardiac and skeletal muscle. Moreover it is now apparent why synthetic peptides corresponding to the previously reported sequence were very poor substrates for the myosin light chain kinase.
- Published
- 1984
38. Role of the myosin light chains in the regulation of contractile activity
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J, Kendrick-Jones, R, Jakes, P, Tooth, R, Craig, and J, Scholey
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Mollusca ,Animals ,Calcium ,Rabbits ,Myosins ,Phosphorylation ,Actins ,Muscle Contraction - Published
- 1982
39. Pituitary fibroblast growth factors: immunocharacterization of an acid component and N-terminal sequence analysis of a truncated basic component
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P L, Ho, R, Jakes, F D, Northrop, and A G, Gambarini
- Subjects
Fibroblast Growth Factors ,Neutralization Tests ,Pituitary Gland ,Sepharose ,Blotting, Western ,Molecular Sequence Data ,Animals ,Cattle ,Amino Acid Sequence ,Amino Acids ,Hydrogen-Ion Concentration ,Isoelectric Focusing ,Chromatography, Affinity - Abstract
Extraction of bovine pituitaries at pH 7.0, in the presence or absence of protease inhibitors (PMSF, leupeptin, pepstatin A and EDTA) yielded both basic and acidic FGF components that were characterized by Western blotting and sequence analysis. Basic FGF comprised several components: an 18 KDa form that is similar, if not identical, to the basic FGF (1-146) already described; a 17 KDa form that is likely to be a new truncated molecular species (11-146) and a group of immunoreactive components of about 29 KDa. Acidic FGF showed several active components of pI 4.5-6.5. The most active component has a pI of approximately 5.0; molecular weight of 17 KDa and is shown, by Western blotting, to be similar to a truncated form of bovine brain acidic FGF. The biological activity of the latter component is shown to be neutralized by anti-brain acidic FGF antiserum.
- Published
- 1988
40. Myosin-Linked Regulation: A Chemical Approach
- Author
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J. Kendrick-Jones and R. Jakes
- Subjects
Calcium metabolism ,biology ,Chemistry ,chemistry.chemical_element ,macromolecular substances ,Calcium ,Tropomyosin ,Troponin ,Cell biology ,Troponin complex ,Calcium-binding protein ,Myosin ,biology.protein ,Actin - Abstract
Calcium is know to play a central role in controlling many cellular processes, for example, in secretion, in the visual cycle and in motility and has been implicated together with cyclic AMP in development, and in the control of many metabolic pathways; however, its role in regulating contraction in muscle is probably the best understood. Muscular contraction is controlled by specific calcium receptor proteins located on either the thick or thin filaments which are involved in switching actin-myosin interaction ON or OFF in response to changes in calcium concentration. In vertebrate striated and cardiac muscles, the regulatory proteins troponin and tropomyosin are associated with the thin filaments (Fig. 1). The extensive electron microscope, X-ray and biochemical evidence suggests that calcium induced changes in the troponin complex may be transmitted via a movement of the tropomyosin in such a way that it affects those sites in the actin molecules which are required for interaction with the myosin cross-bridges (see reviews Weber and Murray, 27; Huxley, 13). In molluscan muscles, the troponin complex is absent and instead calcium regulation of contractile activity requires the presence of specific regulatory light chains on the myosin (Fig. 1) (15, 24). However, little is known about how these regulatory light chains, under calcium, control, effect the transition of the myosin cross-bridge from the resting to the active state.
- Published
- 1977
- Full Text
- View/download PDF
41. Methionyl-tRNA synthetase from Escherichia coli. Primary structure of the active crystallised tryptic fragment
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D G, Barker, J P, Ebel, R, Jakes, and C J, Bruton
- Subjects
Amino Acyl-tRNA Synthetases ,DNA, Bacterial ,Chemistry ,Bacterial Proteins ,Chemical Phenomena ,Escherichia coli ,Chymotrypsin ,Trypsin ,Amino Acid Sequence ,Methionine-tRNA Ligase ,Cloning, Molecular ,Crystallization ,Peptide Fragments - Abstract
A 3300-base segment of Escherichia coli chromosomal DNA, cloned into pBR322, will complement a methionine auxotroph in which the lesion is a defective methionyl-tRNA synthetase with a much reduced affinity for methionine. Crude extracts of these transformants contain elevated levels of a protein which has a subunit molecular weight of 66 000, methionyl-tRNA synthetase aminoacylation activity in vitro and which cross-reacts with anti-(methionyl-tRNA synthetase) antibodies. This polypeptide is very slightly larger than the well-characterised and crystallised tryptic fragment of methionyl-tRNA synthetase. A DNA sequence of 1750 residues at one end of the cloned insert codes for a non-terminated open reading frame in which we can locate a large number of methionyl-tRNA synthetase tryptic and chymotryptic peptides. We have also sequenced 300 nucleotides upstream of this coding segment where we find a large invert repeat in the putative methionyl-tRNA synthetase promoter region.
- Published
- 1982
42. Determination of Certain Phosphate Compounds in Plant Extracts
- Author
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T. Solomos, Jonathan Barker, M. E. Younis, R. Jakes, and F. A. Isherwood
- Subjects
chemistry.chemical_classification ,Multidisciplinary ,Sugar phosphates ,fungi ,food and beverages ,Metabolism ,Phosphate ,chemistry.chemical_compound ,Pigment ,Enzyme ,chemistry ,Biochemistry ,visual_art ,Botany ,visual_art.visual_art_medium ,Glycolysis - Abstract
EXCEPT when isotopes have been used, the investigation of the metabolism of the sugar phosphates and related compounds in animal and plant tissues has long been restricted by a lack of specific methods of determination1. Recently, however, specific enzymatic techniques have been developed for the estimation of both sugar phosphates and glycolytic intermediates in extracts from animal and plant tissues2–7. The enzymatic methods present greater difficulties with plant than with animal extracts, partly because the contents of phosphate compounds are smaller, and partly because the presence of pigments and inhibitors interferes with the assays. But successful results have now been obtained with extracts of potato tubers, strawberry leaves and fruits of banana, tomato and apple.
- Published
- 1962
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- View/download PDF
43. Analysis of combined clinical and diffusion basis spectrum imaging metrics to predict the outcome of chronic cervical spondylotic myelopathy following cervical decompression surgery.
- Author
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Jayasekera D, Zhang JK, Blum J, Jakes R, Sun P, Javeed S, Greenberg JK, Song SK, and Ray WZ
- Abstract
Objective: Cervical spondylotic myelopathy (CSM) is the most common cause of chronic spinal cord injury, a significant public health problem. Diffusion tensor imaging (DTI) is a neuroimaging technique widely used to assess CNS tissue pathology and is increasingly used in CSM. However, DTI lacks the needed accuracy, precision, and recall to image pathologies of spinal cord injury as the disease progresses. Thus, the authors used diffusion basis spectrum imaging (DBSI) to delineate white matter injury more accurately in the setting of spinal cord compression. It was hypothesized that the profiles of multiple DBSI metrics can serve as imaging outcome predictors to accurately predict a patient's response to therapy and his or her long-term prognosis. This hypothesis was tested by using DBSI metrics as input features in a support vector machine (SVM) algorithm., Methods: Fifty patients with CSM and 20 healthy controls were recruited to receive diffusion-weighted MRI examinations. All spinal cord white matter was identified as the region of interest (ROI). DBSI and DTI metrics were extracted from all voxels in the ROI and the median value of each patient was used in analyses. An SVM with optimized hyperparameters was trained using clinical and imaging metrics separately and collectively to predict patient outcomes. Patient outcomes were determined by calculating changes between pre- and postoperative modified Japanese Orthopaedic Association (mJOA) scale scores., Results: Accuracy, precision, recall, and F1 score were reported for each SVM iteration. The highest performance was observed when a combination of clinical and DBSI metrics was used to train an SVM. When assessing patient outcomes using mJOA scale scores, the SVM trained with clinical and DBSI metrics achieved accuracy and an area under the curve of 88.1% and 0.95, compared with 66.7% and 0.65, respectively, when clinical and DTI metrics were used together., Conclusions: The accuracy and efficacy of the SVM incorporating clinical and DBSI metrics show promise for clinical applications in predicting patient outcomes. These results suggest that DBSI metrics, along with the clinical presentation, could serve as a surrogate in prognosticating outcomes of patients with CSM.
- Published
- 2022
- Full Text
- View/download PDF
44. Functional Disruptions of the Brain in Low Back Pain: A Potential Imaging Biomarker of Functional Disability.
- Author
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Lamichhane B, Jayasekera D, Jakes R, Ray WZ, Leuthardt EC, and Hawasli AH
- Abstract
Chronic low back pain (LBP) is one of the leading causes of disability worldwide. While LBP research has largely focused on the spine, many studies have demonstrated a restructuring of human brain architecture accompanying LBP and other chronic pain states. Brain imaging presents a promising source for discovering noninvasive biomarkers that can improve diagnostic and prognostication outcomes for chronic LBP. This study evaluated graph theory measures derived from brain resting-state functional connectivity (rsFC) as prospective noninvasive biomarkers of LBP. We also proposed and tested a hybrid feature selection method (Enet-subset) that combines Elastic Net and an optimal subset selection method. We collected resting-state functional MRI scans from 24 LBP patients and 27 age-matched healthy controls (HC). We then derived graph-theoretical features and trained a support vector machine (SVM) to classify patient group. The degree centrality (DC), clustering coefficient (CC), and betweenness centrality (BC) were found to be significant predictors of patient group. We achieved an average classification accuracy of 83.1% ( p < 0.004) and AUC of 0.937 ( p < 0.002), respectively. Similarly, we achieved a sensitivity and specificity of 87.0 and 79.7%. The classification results from this study suggest that graph matrices derived from rsFC can be used as biomarkers of LBP. In addition, our findings suggest that the proposed feature selection method, Enet-subset, might act as a better technique to remove redundant variables and improve the performance of the machine learning classifier., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Lamichhane, Jayasekera, Jakes, Ray, Leuthardt and Hawasli.)
- Published
- 2021
- Full Text
- View/download PDF
45. Multi-modal biomarkers of low back pain: A machine learning approach.
- Author
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Lamichhane B, Jayasekera D, Jakes R, Glasser MF, Zhang J, Yang C, Grimes D, Frank TL, Ray WZ, Leuthardt EC, and Hawasli AH
- Subjects
- Biomarkers, Brain Mapping, Humans, Machine Learning, Magnetic Resonance Imaging, Low Back Pain diagnostic imaging
- Abstract
Chronic low back pain (LBP) is a very common health problem worldwide and a major cause of disability. Yet, the lack of quantifiable metrics on which to base clinical decisions leads to imprecise treatments, unnecessary surgery and reduced patient outcomes. Although, the focus of LBP has largely focused on the spine, the literature demonstrates a robust reorganization of the human brain in the setting of LBP. Brain neuroimaging holds promise for the discovery of biomarkers that will improve the treatment of chronic LBP. In this study, we report on morphological changes in cerebral cortical thickness (CT) and resting-state functional connectivity (rsFC) measures as potential brain biomarkers for LBP. Structural MRI scans, resting state functional MRI scans and self-reported clinical scores were collected from 24 LBP patients and 27 age-matched healthy controls (HC). The results suggest widespread differences in CT in LBP patients relative to HC. These differences in CT are correlated with self-reported clinical summary scores, the Physical Component Summary and Mental Component Summary scores. The primary visual, secondary visual and default mode networks showed significant age-corrected increases in connectivity with multiple networks in LBP patients. Cortical regions classified as hubs based on their eigenvector centrality (EC) showed differences in their topology within motor and visual processing regions. Finally, a support vector machine trained using CT to classify LBP subjects from HC achieved an average classification accuracy of 74.51%, AUC = 0.787 (95% CI: 0.66-0.91). The findings from this study suggest widespread changes in CT and rsFC in patients with LBP while a machine learning algorithm trained using CT can predict patient group. Taken together, these findings suggest that CT and rsFC may act as potential biomarkers for LBP to guide therapy., (Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
46. The Synucleinopathies: Twenty Years On.
- Author
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Goedert M, Jakes R, and Spillantini MG
- Subjects
- History, 20th Century, History, 21st Century, Humans, Lewy Body Disease history, Multiple System Atrophy history, Parkinson Disease history, Lewy Body Disease metabolism, Multiple System Atrophy metabolism, Parkinson Disease metabolism, alpha-Synuclein metabolism
- Abstract
In 2017, it is two hundred years since James Parkinson provided the first complete clinical description of the disease named after him, fifty years since the introduction of high-dose D,L-DOPA treatment and twenty years since α-synuclein aggregation came to the fore. In 1998, multiple system atrophy joined Parkinson's disease and dementia with Lewy bodies as the third major synucleinopathy. Here we review our work, which led to the identification of α-synuclein in Lewy bodies, Lewy neurites and Papp-Lantos bodies, as well as what has happened since. Some of the experiments described were carried out in collaboration with ML Schmidt, JQ Trojanowski and VMY Lee.
- Published
- 2017
- Full Text
- View/download PDF
47. Human beta-synuclein rendered fibrillogenic by designed mutations.
- Author
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Zibaee S, Fraser G, Jakes R, Owen D, Serpell LC, Crowther RA, and Goedert M
- Subjects
- Animals, Gene Expression Regulation, Humans, Mice, Multiprotein Complexes, Parkinson Disease genetics, Parkinson Disease metabolism, Protein Structure, Quaternary, Protein Structure, Secondary, alpha-Synuclein chemistry, alpha-Synuclein genetics, alpha-Synuclein metabolism, beta-Synuclein genetics, beta-Synuclein metabolism, Point Mutation, beta-Synuclein chemistry
- Abstract
Filamentous inclusions made of α-synuclein are found in nerve cells and glial cells in a number of human neurodegenerative diseases, including Parkinson disease, dementia with Lewy bodies, and multiple system atrophy. The assembly and spreading of these inclusions are likely to play an important role in the etiology of common dementias and movement disorders. Both α-synuclein and the homologous β-synuclein are abundantly expressed in the central nervous system; however, β-synuclein is not present in the pathological inclusions. Previously, we observed a poor correlation between filament formation and the presence of residues 73-83 of α-synuclein, which are absent in β-synuclein. Instead, filament formation correlated with the mean β-sheet propensity, charge, and hydrophilicity of the protein (global physicochemical properties) and β-strand contiguity calculated by a simple algorithm of sliding averages (local physicochemical property). In the present study, we rendered β-synuclein fibrillogenic via one set of point mutations engineered to enhance global properties and a second set engineered to enhance predominantly β-strand contiguity. Our findings show that the intrinsic physicochemical properties of synucleins influence their fibrillogenic propensity via two distinct but overlapping modalities. The implications for filament formation and the pathogenesis of neurodegenerative diseases are discussed.
- Published
- 2010
- Full Text
- View/download PDF
48. Lewy body variant of Alzheimer's disease: selective neocortical loss of t-SNARE proteins and loss of MAP2 and alpha-synuclein in medial temporal lobe.
- Author
-
Mukaetova-Ladinska EB, Xuereb JH, Garcia-Sierra F, Hurt J, Gertz HJ, Hills R, Brayne C, Huppert FA, Paykel ES, McGee MA, Jakes R, Honer WG, Harrington CR, and Wischik CM
- Subjects
- Aged, Aged, 80 and over, Enzyme-Linked Immunosorbent Assay, Female, Humans, Lewy Bodies metabolism, Male, Neocortex pathology, Phosphorylation, Synaptosomes metabolism, tau Proteins metabolism, Alzheimer Disease metabolism, Lewy Body Disease metabolism, Microtubule-Associated Proteins analysis, Neocortex chemistry, SNARE Proteins analysis, Temporal Lobe chemistry, alpha-Synuclein analysis
- Abstract
Lewy bodies (LBs) appear in the brains of nondemented individuals and also occur in a range of neurodegenerative disorders, such as dementia with Lewy bodies (DLB) and Parkinson's disease. A number of people with a definite diagnosis of Alzheimer's disease (AD) also exhibit these intraneuronal inclusions in allo- and/or neocortical areas. The latter, referred to as Lewy body variant of AD (LBV), bears a clinical resemblance to AD in terms of age at onset, duration of illness, cognitive impairment, and illness severity. Since the presence of LBs is accompanied by neuronal cytoskeleton changes, it is possible that the latter may influence neuronal connectivity via alterations to the synaptic network. To address this, we examined the expression of synaptic proteins (synaptophysin, syntaxin, SNAP-25, and alpha-synuclein) and two cytoskeletal proteins (tau and MAP2) in the brain tissue of subjects enrolled in a population-based autopsy study (n = 47). They were divided into groups with no memory problems (control group, n = 15), LBV (n = 5), AD devoid of LBs (n = 17), cerebrovascular dementia (n = 3), and mixed dementia (n = 7). The LBV and AD groups had a similar degree of cognitive impairment and neuropathological staging in terms of Braak staging and CERAD score. In comparison with the control group and the dementia groups without LBs, the LBV group had significantly lower levels of syntaxin and SNAP-25 (23%) in the neocortex, and depletion of MAP2 (64%), SNAP-25 (34%), and alpha-synuclein (44%) proteins in the medial temporal lobes. These findings suggest that the t-SNARE complex deficit present in LBV may be associated with the presence of LB-related pathology and may explain the more profound cholinergic loss seen in these patients.
- Published
- 2009
- Full Text
- View/download PDF
49. Sequence Determinants for Amyloid Fibrillogenesis of Human alpha-Synuclein.
- Author
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Zibaee S, Jakes R, Fraser G, Serpell LC, Crowther RA, and Goedert M
- Subjects
- Amino Acid Sequence, Amyloid ultrastructure, Benzothiazoles, Fluorescence, Humans, Molecular Sequence Data, Mutation genetics, Protein Conformation, Protein Folding, Sequence Deletion, Sequence Homology, Amino Acid, Thiazoles chemistry, alpha-Synuclein ultrastructure, beta-Synuclein chemistry, Amyloid chemistry, alpha-Synuclein chemistry
- Abstract
Parkinson's disease (PD) and dementia with Lewy bodies (DLB) are characterized by the presence of filamentous inclusions in nerve cells. These filaments are amyloid fibrils that are made of the protein alpha-synuclein, which is genetically linked to rare cases of PD and DLB. beta-Synuclein, which shares 60% identity with alpha-synuclein, is not found in the inclusions. Furthermore, while recombinant alpha-synuclein readily assembles into amyloid fibrils, beta-synuclein fails to do so. It has been suggested that this may be due to the lack in beta-synuclein of a hydrophobic region that spans residues 73-83 of alpha-synuclein. Here, fibril assembly of recombinant human alpha-synuclein, alpha-synuclein deletion mutants, beta-synuclein and beta/alpha-synuclein chimeras was assayed quantitatively by thioflavin T fluorescence and semi-quantitatively by transmission electron microscopy. Deletion of residues 73-83 from alpha-synuclein did not abolish filament formation. Furthermore, a chimera of beta-synuclein with alpha-synuclein(73-83) inserted was significantly less fibrillogenic than wild-type alpha-synuclein. These findings, together with results obtained using a number of recombinant synucleins, showed a correlation between fibrillogenesis and mean beta-strand propensity, hydrophilicity and charge of the amino acid sequences. The combination of these simple physicochemical properties with a previously described calculation of beta-strand contiguity allowed us to design mutations that changed the fibrillogenic propensity of alpha-synuclein in predictable ways.
- Published
- 2007
- Full Text
- View/download PDF
50. Work and leisure time physical activity assessed using a simple, pragmatic, validated questionnaire and incident cardiovascular disease and all-cause mortality in men and women: The European Prospective Investigation into Cancer in Norfolk prospective population study.
- Author
-
Khaw KT, Jakes R, Bingham S, Welch A, Luben R, Day N, and Wareham N
- Subjects
- Aged, Cholesterol blood, Diabetes Mellitus, England epidemiology, Female, Humans, Hypertension, Incidence, Male, Middle Aged, Population Surveillance methods, Prospective Studies, Risk, Smoking, Social Class, Surveys and Questionnaires, Cardiovascular Diseases epidemiology, Leisure Activities, Mortality, Motor Activity, Work
- Abstract
Background: The health benefits of physical activity are well established, but the overall amount of physical activity associated with cardiovascular and other health outcomes, and whether the relationships are similar in men and women and at different ages is still debated. This may be partly related to different methods for assessing physical activity. Most studies have focused on leisure time physical activity., Methods: We examined the prospective relationship between usual physical activity, taking into account both leisure and work activity, using a simple, pragmatic, four-point rating scale validated against heart rate monitoring, and cardiovascular disease incidence and total mortality after an average 8 years follow-up in 22,191 community living men and women aged 45-79 years with no known cardiovascular disease or cancer at baseline., Results: The relative risks (95% confidence interval) for all-cause mortality (1,553 deaths) for men and women who were moderately inactive, moderately active, and active compared with those who were inactive were 0.83 (0.73-0.95), 0.68 (0.58-0.80), and 0.68 (0.57-0.81), respectively, after adjusting for age, sex, systolic blood pressure, blood cholesterol, cigarette smoking, alcohol intake, diabetes, body mass index, and social class. The relationships were also consistent for cardiovascular disease incidence (3,079 events), in subgroups stratified by age, sex, body mass index, smoking status and social class, and after excluding deaths in the first 2 years. The combined scale was more consistently associated with mortality than the individual work and leisure time components separately., Conclusions: When both work and leisure time physical activity patterns are taken into account, using a simple, pragmatic, validated questionnaire feasible for use in clinical and public health practice, even very moderate levels of usual physical activity are associated with significantly reduced risk of mortality and cardiovascular disease in men and women in the general population and potential population attributable impact of 14% for inactive compared with active levels. These findings may encourage efforts to increase physical activity levels not only in leisure time but also in usual daily working life.
- Published
- 2006
- Full Text
- View/download PDF
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