1,192 results on '"R, Mora"'
Search Results
2. Synthesis, Photophysical Properties, Theoretical Studies, and Living Cancer Cell Imaging Applications of New 7‑(Diethylamino)quinolone Chalcones
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Daniel Insuasty, Mario Mutis, Jorge Trilleras, Luis A. Illicachi, Juan D. Rodríguez, Andrea Ramos-Hernández, Homero G. San-Juan-Vergara, Christian Cadena-Cruz, José R. Mora, José L. Paz, Maximiliano Méndez-López, Edwin G. Pérez, Margarita E. Aliaga, Jhesua Valencia, and Edgar Márquez
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Chemistry ,QD1-999 - Published
- 2024
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3. Analyzing coherent and incoherent optical susceptibilities in four-wave mixing: stochasticity, symmetry, and intramolecular coupling
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José L. Paz, Cristhian Davila, Marcos A. Loroño, Lenin González-Paz, Edgar Márquez, José R. Mora, and Ysaias J. Alvarado
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Nonlinear optical susceptibilities ,Propagation ,Coherent ,Incoherent ,Intramolecular coupling ,Physics ,QC1-999 - Abstract
The nonlinear optical susceptibilities are analyzed in their optical propagation length considering the incoherent-coherent contributions with the dependence on the relaxation times. In addition, some symmetry properties of the Four-Wave mixing (FWM) signal concerning the frequency detuning exchange are used in the study, without restricting ourselves to the maxima of population oscillations. We analyze the behaviors of these optical responses in a vibronic coupling scheme using a molecule model consisting of two coupled harmonic curves of electronic energies with displaced minima in position and nuclear energies. The solvent effect in our model is treated through the natural Bohr frequency shift to a time-dependent function, with explicit manifestations in its comparison as if the upper state were broadened. Our results for both FWM signal propagation and nonlinear optical susceptibilities are sensitive to the intramolecular coupling parameters, solvent stochasticity, and perturbation order for the treatment of the weak probe beam. The consideration of a second-order probe beam in FWM would not represent a significant contribution to the predicted results, since its percentage contribution is negligible within the model development framework; however, this contribution becomes important when increasing the ratio between longitudinal and transverse relaxation times.
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- 2024
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4. Parametric Characterization of Nonlinear Optical Susceptibilities in Four-Wave Mixing: Solvent and Molecular Structure Effects
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José L. Paz, Alberto Garrido-Schaeffer, Marcos A. Loroño, Lenin González-Paz, Edgar Márquez, José R. Mora, and Ysaias J. Alvarado
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four-wave mixing ,stochastic ,vibronic ,nonlinear optical susceptibilities ,Mathematics ,QA1-939 - Abstract
We study the nonlinear absorptive and dispersive optical properties of molecular systems immersed in a thermal reservoir interacting with a four-wave mixing (FWM) signal. Residual spin-orbit Hamiltonians are considered in order to take into account the internal structure of the molecule. As system parameters in the dissipation processes, transverse and longitudinal relaxation times are considered for stochastic solute–solvent interaction processes. The intramolecular coupling effects on the optical responses are studied using a molecule model consisting of two coupled harmonic curves of electronic energies with displaced minima in nuclear energies and positions. In this study, the complete frequency space is considered through the pump–probe detuning, without restricting the derivations to only maximums of population oscillations. This approach opens the possibility of studying the behavior of optical responses, which is very useful in experimental design. Our results indicate the sensitivity of the optical responses to parameters of the molecular structure as well as to those derived from the photonic process of FWM signal generation.
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- 2024
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5. Photoelectrocatalytic degradation of high-density polyethylene microplastics on TiO2-modified boron-doped diamond photoanode
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Wendy Quilumbaquin, G. Xavier Castillo-Cabrera, Luis J. Borrero-González, José R. Mora, Vladimir Valle, Alexis Debut, Luis D. Loor-Urgilés, and Patricio J. Espinoza-Montero
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Materials chemistry ,Devices ,Science - Abstract
Summary: Microplastic (MP) accumulation in the environment is accelerating rapidly, which has led to their effects on both the ecosystem and human life garnering much attention. This study is the first to examine the degradation of high-density polyethylene (HDPE) MPs via photoelectrocatalysis (PEC) using a TiO2-modified boron-doped diamond (BDD/TiO2) photoanode. This study was divided into three stages: (i) preparation of the photoanode through electrophoretic deposition of synthetic TiO2 nanoparticles on a BDD electrode; (ii) characterization of the modified photoanode using electrochemical, structural, and optical techniques; and (iii) degradation of HDPE MPs by electrochemical oxidation and photoelectrocatalysis on bare and modified BDD electrodes under dark and UV light conditions. The results indicate that the PEC technique degraded 89.91 ± 0.08% of HDPE MPs in a 10-h reaction and was more efficient at a lower current density (6.89 mA cm−1) with the BDD/TiO2 photoanode compared to electrochemical oxidation on bare BDD.
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- 2024
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6. ‘Yo soy la única burra’ [I’m the only dumb one]. Not Anymore. An Intersectional Approach to Digital Inclusion
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Claudia Silva, Adolfo R. Mora, and Joseph D. Straubhaar
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Gender ,class ,intersectionality ,technology ,digital divide ,digital inclusion ,Communication. Mass media ,P87-96 ,Journalism. The periodical press, etc. ,PN4699-5650 - Abstract
This paper applies intersectionality theory to analyze the challenges and successes of vulnerable communities in developing techno-capital—a form of cultural capital that influences individuals’ technology adoption and usage. Through ethnographic methods, such as participant observations and interviews among a group of working-class US Latinas in central Texas, this work aims to explore why digital inclusion programs should go beyond the first and second levels of the digital divide. Our findings show that this group of women faced unique barriers to digital inclusion, such as skills, time, perceived self-exclusion, and self-doubt. Even when Internet access, devices, and knowledge existed in their homes, they felt they lacked the abilities to access them, thus reflecting complex gendered family dynamics. A two-year ethnography with a non-profit serving the youth and parents of their neighborhood revealed that even this organization had trouble recognizing multiple, interconnected issues arising from gender, household roles, and age on top of the other categories of issues faced by working-class Latino immigrants in a large urban enclave. However, intersectional analysis by the lead author, when working for the non-profit, enabled her to better see and make decisions to serve these women’s needs for digital inclusion and parent education.
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- 2024
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7. Impact of different treatments on the antioxidant properties of two market types of peanuts grown in Mexico
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M.C. Robles-Ramírez, R. Viramontes-Bocanegra, R. Mora-Escobedo, E. Ortega-Robles, and M.C. Beltrán-Orozco
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Antioxidant capacity ,Peanut processing ,Total flavonoids ,Total phenolics ,Nutrition. Foods and food supply ,TX341-641 - Abstract
The effect of roasting, frying, microwave heating, and germination on the antioxidant properties, total phenolics and flavonoids content of two types of peanuts (Valencia and Virginia) grown in Mexico was investigated. The thermal treatments affected the phenolic content and the antioxidant capacity of the two varieties of peanuts differently (by ABTS, DPPH, FRAP and iron chelating activity methods). Germination was the best method to increase the antioxidant activity (up to 157% increase in the Virginia variety) and the contents of compounds with nutraceutical potential in the peanuts (up to 59% increase in total phenolics in the Valencia variety and 700% increase in total flavonoids in the Virginia variety). Germinated peanuts could be used as raw material for the production of functional foods.
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- 2023
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8. Stochastic Nature and Intramolecular Coupling in Optical Response Profiles: Critical Analysis through Semiclassical Models
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José Luis Paz, Marcos A. Loroño, Lenin A. González-Paz, Edgar Márquez, José R. Mora, and Ysaias J. Alvarado
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Chemistry ,QD1-999 - Published
- 2023
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9. Tremorgenic mycotoxicosis in cattle, caused by Claviceps paspali
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N Ayala-Soldado, Lora-Benitez AJ, R Mora-Medina, Molina-Lopez AMª, Artillo-Guimera JI, and Moyano-Salvago MªR
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bovine ,mycotoxins ,paspalum ,sclerotium ,tremor ,Veterinary medicine ,SF600-1100 - Abstract
Claviceps paspali is a fungus that mainly parasitises Paspalum dilatatum, generating a structure denominated sclerotium, in which indole-diterpenoid alkaloids are isolated. Its action mechanism is related to the inhibition of the gamma-aminobutyric acid receptor. It basically affects bovines, triggering the tremorgenic syndrome, the prevalence of this intoxication being relatively low in Europe. This work describes a clinical case on a cattle farm in Seville (southern Spain), composed of 91 bovines, 60% of which were principally affected with nervous clinical signs. The diagnosis was based on a clinical inspection of the animals, as well as of the presence of paspalum seed heads containing the sclerotia of Claviceps paspali in the plants present in the pastures. The causal agent was identified as being Claviceps paspali, which had parasitised numerous examples of Paspalum paspaloides. The indole-diterpenoid alkaloids produced by Claviceps paspali were identified using ultraviolet-visible spectrophotometry and mass spectrometry. At present, no effective aetiological treatment has been described for poisoning caused by this mycotoxin, so a supportive treatment was administered, and different handling methods were applied, resulting in the complete recovery of the animals. Finally, it was concluded that unusually high humidity and temperature levels for the region triggered the development of the sclerotium generated by this fungus.
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- 2023
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10. Searching glycolate oxidase inhibitors based on QSAR, molecular docking, and molecular dynamic simulation approaches
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Nicolás Cabrera, Sebastián A. Cuesta, José R. Mora, José Luis Paz, Edgar A. Márquez, Patricio J. Espinoza-Montero, Yovani Marrero-Ponce, Noel Pérez, and Ernesto Contreras-Torres
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Medicine ,Science - Abstract
Abstract Primary hyperoxaluria type 1 (PHT1) treatment is mainly focused on inhibiting the enzyme glycolate oxidase, which plays a pivotal role in the production of glyoxylate, which undergoes oxidation to produce oxalate. When the renal secretion capacity exceeds, calcium oxalate forms stones that accumulate in the kidneys. In this respect, detailed QSAR analysis, molecular docking, and dynamics simulations of a series of inhibitors containing glycolic, glyoxylic, and salicylic acid groups have been performed employing different regression machine learning techniques. Three robust models with less than 9 descriptors—based on a tenfold cross (Q2 CV) and external (Q2 EXT) validation—were found i.e., MLR1 (Q2 CV = 0.893, Q2 EXT = 0.897), RF1 (Q2 CV = 0.889, Q2 EXT = 0.907), and IBK1 (Q2 CV = 0.891, Q2 EXT = 0.907). An ensemble model was built by averaging the predicted pIC50 of the three models, obtaining a Q2 EXT = 0.933. Physicochemical properties such as charge, electronegativity, hardness, softness, van der Waals volume, and polarizability were considered as attributes to build the models. To get more insight into the potential biological activity of the compouds studied herein, docking and dynamic analysis were carried out, finding the hydrophobic and polar residues show important interactions with the ligands. A screening of the DrugBank database V.5.1.7 was performed, leading to the proposal of seven commercial drugs within the applicability domain of the models, that can be suggested as possible PHT1 treatment.
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- 2022
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11. Analysis of the Immunogenicity from Abatacept‐Treated Pediatric Patients With Polyarticular‐Course Juvenile Idiopathic Arthritis: Findings From Two Phase III Clinical Trials
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Johanna R. Mora, Robert Wong, Mehmooda Shaikh, and Margarita Askelson
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Diseases of the musculoskeletal system ,RC925-935 - Abstract
Objective The goal of this article is to present the analysis of anti‐abatacept antibody data from children with polyarticular‐course juvenile idiopathic arthritis (pJIA), treated with abatacept. The data are from 395 participants with pJIA from two abatacept registrational trials. Methods We analyzed immunogenicity data according to age groups, administration route (intravenous [IV] or subcutaneous [SC]), drug treatment interruption, and co‐medications (with or without methotrexate [MTX]) to assess impact on the incidence of anti‐abatacept antibodies. Results The overall immunogenicity incidences observed in both JIA trials ranged between 4.7% and 23.3%. There was a slightly higher immunogenicity incidence in the 2–5‐year‐old participants (15.2%) compared with 6–17‐year‐old participants (4.7%). In the study with SC dosing, the overall incidence on treatment was 2.3% (3% if co‐dosed with MTX), similar to the incidence for Period A of the IV study (similar duration of treatment as the SC study), which was 2.1% (1.4% if co‐dosed with MTX). In the IV study, the period following a 6‐month interruption in treatment had comparable immunogenicity incidences (22.9% with interruption vs. 18.2% without interruption, both co‐dosed with MTX and 0% for both not co‐dosed with MTX). In most cases, participants co‐dosed with MTX had higher immunogenicity incidences than those on abatacept alone. Conclusion Although some trends were noted in terms of incidence according to age and MTX co‐dosing, none where conclusive owing to differences in population size. Drug holiday had no impact on immunogenicity incidence once treatment was resumed, and incidences across SC and IV dosing were comparable. There was no impact of immunogenicity on pharmacokinetics, safety, and efficacy.
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- 2022
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12. Response of a hydrothermal system to escalating phreatic unrest: the case of Turrialba and Irazú in Costa Rica (2007–2012)
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D. Rouwet, R. Mora-Amador, C. Ramírez, G. González, E. Baldoni, G. Pecoraino, S. Inguaggiato, B. Capaccioni, F. Lucchi, and C. A. Tranne
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Irazú and Turrialba volcanoes ,Phreatic eruptions ,Thermal springs ,Fluid geochemistry ,Crater lake disappearance ,Water budget analysis ,Geography. Anthropology. Recreation ,Geodesy ,QB275-343 ,Geology ,QE1-996.5 - Abstract
Abstract This study presents the first hydrogeochemical model of the hydrothermal systems of Turrialba and Irazú volcanoes in central Costa Rica, manifested as thermal springs, summit crater lakes, and fumarolic degassing at both volcanoes. Our period of observations (2007–2012) coincides with the pre- and early syn-phreatic eruption stages of Turrialba volcano that resumed volcanic unrest since 2004, after almost 140 years of quiescence. Peculiarly, the generally stable Irazú crater lake dropped its level during this reawakening of Turrialba. The isotopic composition of all the discharged fluids reveals their Caribbean meteoric origin. Four groups of thermal springs drain the northern flanks of Turrialba and Irazú volcanoes into two main rivers. Río Sucio (i.e. “dirty river”) is a major rock remover on the North flank of Irazú, mainly fed by the San Cayetano spring group. Instead, one group of thermal springs discharges towards the south of Irazú. All thermal spring waters are of SO4-type (i.e. steam-heated waters), none of the springs has, however, a common hydrothermal end-member. A water mass budget for thermal springs results in an estimated total output flux of 187 ± 37 L/s, with 100 ± 20 L/s accounted for by the San Cayetano springs. Thermal energy release is estimated at 110 ± 22 MW (83.9 ± 16.8 MW by San Cayetano), whereas the total rock mass removal rate by chemical leaching is ~ 3000 m3/year (~ 2400 m3/year by San Cayetano-Río Sucio). Despite Irazú being the currently less active volcano, it is a highly efficient rock remover, which, on the long term can have effects on the stability of the volcanic edifice with potentially hazardous consequences (e.g. flank collapse, landslides, phreatic eruptions). Moreover, the vapor output flux from the Turrialba fumaroles after the onset of phreatic eruptions on 5 January 2010 showed an increase of at least ~ 260 L/s above pre-eruptive background fumarolic vapor fluxes. This extra vapor loss implies that the drying of the summit hydrothermal system of Turrialba could tap deeper than previously thought, and could explain the coincidental disappearance of Irazú’s crater lake in April 2010.
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- 2021
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13. Carotid agenesis and absence of bifurcation, asymptomatic and incidental, during the study of cognitive impairment: a case report
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E. Cancho García and R. Mora Monago
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Neurology. Diseases of the nervous system ,RC346-429 - Published
- 2021
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14. A kinetic model for the equilibrium dynamics of absorption and scattering processes in four-wave mixing spectroscopy
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Jose Luis Paz, Marcos Loroño, F. Javier Torres, Lenin A. González-Paz, Edgar Marquez, José R. Mora, Ysaias J. Alvarado, and Vladimiro Mujica
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Physics ,QC1-999 - Abstract
We construct a kinetic model, analogous to a simple chemical reaction, to describe the spatial propagation of the electromagnetic fields in four-wave mixing spectroscopy in a two-level molecular model, explicitly taking into account the stochastic effects of the solvent. We show that in this case, the nonlinear optics processes (absorption and scattering) along the optical path can be described using an analogy with the kinetic processes that occur in a chemical reaction. A key result is that it is possible to define an apparent equilibrium constant that regulates the competition of the photonic processes that take place, an idea conceptually similar to Einstein’s model for spontaneous emission and how it can be connected to induced emission in atoms and molecules but including an extension to nonlinear optical and relaxation processes. Our model can be generalized to describe a variety of phenomena in nano-photonics and plasmonic systems.
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- 2022
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15. Complex Networks Analyses of Antibiofilm Peptides: An Emerging Tool for Next-Generation Antimicrobials’ Discovery
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Guillermin Agüero-Chapin, Agostinho Antunes, José R. Mora, Noel Pérez, Ernesto Contreras-Torres, José R. Valdes-Martini, Felix Martinez-Rios, Cesar H. Zambrano, and Yovani Marrero-Ponce
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antibiofilm peptide ,chemical space ,StarPep toolbox ,complex network ,centrality measure ,motif discovery ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Microbial biofilms cause several environmental and industrial issues, even affecting human health. Although they have long represented a threat due to their resistance to antibiotics, there are currently no approved antibiofilm agents for clinical treatments. The multi-functionality of antimicrobial peptides (AMPs), including their antibiofilm activity and their potential to target multiple microbes, has motivated the synthesis of AMPs and their relatives for developing antibiofilm agents for clinical purposes. Antibiofilm peptides (ABFPs) have been organized in databases that have allowed the building of prediction tools which have assisted in the discovery/design of new antibiofilm agents. However, the complex network approach has not yet been explored as an assistant tool for this aim. Herein, a kind of similarity network called the half-space proximal network (HSPN) is applied to represent/analyze the chemical space of ABFPs, aiming to identify privileged scaffolds for the development of next-generation antimicrobials that are able to target both planktonic and biofilm microbial forms. Such analyses also considered the metadata associated with the ABFPs, such as origin, other activities, targets, etc., in which the relationships were projected by multilayer networks called metadata networks (METNs). From the complex networks’ mining, a reduced but informative set of 66 ABFPs was extracted, representing the original antibiofilm space. This subset contained the most central to atypical ABFPs, some of them having the desired properties for developing next-generation antimicrobials. Therefore, this subset is advisable for assisting the search for/design of both new antibiofilms and antimicrobial agents. The provided ABFP motifs list, discovered within the HSPN communities, is also useful for the same purpose.
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- 2023
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16. Hydrogel for the Controlled Delivery of Bioactive Components from Extracts of Eupatorium glutinosum Lam. Leaves
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Lizbeth Zamora-Mendoza, Santiago Nelson Vispo, Lola De Lima, José R. Mora, António Machado, and Frank Alexis
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controlled delivery system ,antioxidant activity ,anti-hemolytic activity ,antibacterial activity ,secondary metabolites ,Organic chemistry ,QD241-441 - Abstract
This research reported a hydrogel loaded with the ethanolic and methanolic extracts of Eupatorium glutinosum Lam. The E. glutinosum extracts were characterized by phytochemical screening, Fourier-transform infrared spectroscopy (FTIR), thin-layer chromatography (TLC), and UV/Vis profile identification. This research also evaluated the pharmacological activity of the extracts using antimicrobial, antioxidant, and anti-inflammatory assays prior to polymeric encapsulation. Results indicate that extracts inhibit the Escherichia colii DH5-α (Gram negative) growth; excellent antioxidant activity was evaluated by the ferric reducing power and total antioxidant activity assays, and extracts showed an anti-hemolytic effect. Moreover, the cotton and microcrystalline cellulose hydrogels demonstrate successful encapsulation based on characterization and kinetics studies such as FTIR, extract release, and swelling degree. Moreover, effective antibacterial activity was registered by the loaded hydrogel. The overall results encourage and show that Eupatorium glutinosum-loaded hydrogel may find a wide range of bandage and wound healing applications in the biomedical area.
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- 2023
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17. QSAR Studies, Molecular Docking, Molecular Dynamics, Synthesis, and Biological Evaluation of Novel Quinolinone-Based Thiosemicarbazones against Mycobacterium tuberculosis
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Jhesua Valencia, Vivian Rubio, Gloria Puerto, Luisa Vasquez, Anthony Bernal, José R. Mora, Sebastian A. Cuesta, José Luis Paz, Braulio Insuasty, Rodrigo Abonia, Jairo Quiroga, Alberto Insuasty, Andres Coneo, Oscar Vidal, Edgar Márquez, and Daniel Insuasty
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Mycobacterium tuberculosis ,QSAR ,docking ,quinolinone ,thiosemicarbazone ,molecular dynamics and cytotoxicity ,Therapeutics. Pharmacology ,RM1-950 - Abstract
In this study, a series of novel quinolinone-based thiosemicarbazones were designed in silico and their activities tested in vitro against Mycobacterium tuberculosis (M. tuberculosis). Quantitative structure-activity relationship (QSAR) studies were performed using quinolinone and thiosemicarbazide as pharmacophoric nuclei; the best model showed statistical parameters of R2 = 0.83; F = 47.96; s = 0.31, and was validated by several different methods. The van der Waals volume, electron density, and electronegativity model results suggested a pivotal role in antituberculosis (anti-TB) activity. Subsequently, from this model a new series of quinolinone-thiosemicarbazone 11a–e was designed and docked against two tuberculosis protein targets: enoyl-acyl carrier protein reductase (InhA) and decaprenylphosphoryl-β-D-ribose-2’-oxidase (DprE1). Molecular dynamics simulation over 200 ns showed a binding energy of −71.3 to −12.7 Kcal/mol, suggesting likely inhibition. In vitro antimycobacterial activity of quinolinone-thiosemicarbazone for 11a–e was evaluated against M. bovis, M. tuberculosis H37Rv, and six different strains of drug-resistant M. tuberculosis. All compounds exhibited good to excellent activity against all the families of M. tuberculosis. Several of the here synthesized compounds were more effective than the standard drugs (isoniazid, oxafloxacin), 11d and 11e being the most active products. The results suggest that these compounds may contribute as lead compounds in the research of new potential antimycobacterial agents.
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- 2022
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18. Consumers Respond Positively to the Sensory, Health, and Sustainability Benefits of the Rare Sugar Allulose in Yogurt Formulations
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Margaux R. Mora, Zhixin Wang, Julie M. Goddard, and Robin Dando
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allulose ,natural sweeteners ,dairy ,sustainability ,rare sugars ,yogurt ,Chemical technology ,TP1-1185 - Abstract
Increased added sugar consumption is associated with type II diabetes, metabolic syndrome, and cardiovascular disease. Low and no-calorie alternative sweeteners have long been used as an aid in the reduction of added sugar. Unfortunately, these alternative sweeteners often have notable sensory deficits when compared to sucrose. Furthermore, many alternative sweeteners have synthetic origins, while consumers are increasingly turning to foods from natural origins, and from more sustainable sources. Such sweeteners include the rare sugar allulose, which can be manufactured from common agricultural waste and dairy co-product streams, and is reported to have a sensory profile similar to sucrose. This study aimed to determine the influence of the rare sugar allulose on consumer perception of sweetened vanilla yogurt. Participants were recruited to evaluate 4 vanilla yogurts sweetened with either sucrose, allulose, stevia or sucralose, and to rate their liking of the samples overall, and for flavor, texture, and their purchase intent. Statistical analysis of hedonic data from 100 consumers suggested that allulose performed similarly to sucrose in liking and purchase intent, and superior to other sweeteners tested in this study, with fewer off-flavors. Moreover, when consumers were queried on their purchase intent after learning details on the sweetener for each formulation, allulose scored significantly higher than all other formulations in purchase intent. This study highlights the potential of the rare sugar allulose as a low calorie, zero glycemic index, natural and better tasting sugar replacement in sweetened yogurt.
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- 2022
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19. A COMPARATIVE STUDY BETWEEN WMMS AND TLS FOR THE STABILITY ANALYSIS OF THE SAN PEDRO CHURCH BARREL VAULT BY MEANS OF THE FINITE ELEMENT METHOD
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L. J. Sánchez-Aparicio, B. Conde, M. A. Maté-González, R. Mora, M. Sánchez-Aparicio, J. García-Álvarez, and D. González-Aguilera
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Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Applied optics. Photonics ,TA1501-1820 - Abstract
Stability of masonry constructions is highly conditioned by the geometric disposition of its elements due to its low tensile strength and great compressive mechanical properties. Under this framework, this paper attempts to evaluate the suitability of a wearable mobile mapping solution, equipped in a backpack and based on the well-known simultaneous location and mapping paradigm, for the structural diagnosis of historical constructions. To evaluate the suitability of this device, the structural analysis obtained is compared with a high precision terrestrial laser scanner, which is considered as ground truth. The Romanesque church of San Pedro (Becerril del Carpio, Spain) was selected as a study case. This construction, initially conceived in the XIIIth century, has experimented in the past a soil settlement promoting the leaning of the north wall, several plastic hinges in its barrel vault and a visible geometrical deformation. The comparison of both techniques was carried out at different levels: i) an evaluation of the time needed to obtain the point cloud of the church; ii) an accuracy assessment based on the comparison of a terrestrial network using artificial spheres as checkpoints and; iii) an evaluation of the discrepancies, in terms of safety factor and collapse topology, found during the advance numerical evaluation of the barrel vault by means of the finite element method. This comparison places this wearable mobile mapping solution as an interesting tool for the creation of advanced numerical simulations to evaluate the structural stability of historical constructions.
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- 2019
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20. Kinetic study of the catalytic cracking of waste motor oil using biomass-derived heterogeneous catalysts
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Yuliana Rodriguez, Renato Guerra, Karla Vizuete, Alexis Debut, Daniela Almeida Streitwieser, Jose R. Mora, and Sebastian Ponce
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Waste Management and Disposal - Published
- 2023
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21. Propagation and Parametric Amplification in Four-Wave Mixing Processes: Intramolecular Coupling and High-Order Effects
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José Luis Paz, Patricio J. Espinoza-Montero, Marcos Loroño, Fernando Javier Torres, Lenin González-Paz, Edgar Márquez, Joan Vera-Villalobos, José R. Mora, Fernando Moncada, and Ysaias J. Alvarado
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intramolecular coupling ,propagation effects ,parametric amplification ,Mathematics ,QA1-939 - Abstract
A strong pump-power dependence of the four-wave mixing (FWM) signal for an aqueous solution of Malachite green is reported. The characteristics of the pump-power dependence of the nonlinear signal are reproduced by a theoretical model based on the coupling between pump-probe, considering signal fields and propagation effects. The effect of the intramolecular coupling on the nonlinear intensity of the FWM signal is studied using a model molecule consisting of two-coupled harmonic curves of electronic energies with minima displaced in energy and nuclear positions. Two-vibrational states are considered while including non-adiabatic effects for the two-state model. Moreover, the coupling among the field components, as well as the propagation effects, are studied by considering a constant pump-intensity. Our calculation scheme, considering both the intramolecular coupling effects in the description of the molecular structure and the effects produced by the propagation of the FWM signal along the optical length, allows the exponential dependence of the latter, as the intensity of the pumping beam increases. Our treatments do not require the inclusion of other non-resonant processes outside the RWA approximation, due to the consideration of an adiabatic basis.
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- 2022
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22. Transoral glossoepiglottopexy in the treatment of adult obstructive sleep apnoea: a surgical approach
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V. ROUSTAN, M. BARBIERI, F. INCANDELA, F. MISSALE, H. CAMERA, F. BRAIDO, R. MORA, and G. PERETTI
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Otorhinolaryngology ,RF1-547 - Published
- 2018
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23. ElectroPredictor: An Application to Predict Mayr’s Electrophilicity E through Implementation of an Ensemble Model Based on Machine Learning Algorithms
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Sebastián A. Cuesta, Martín Moreno, Romina A. López, José R. Mora, José Luis Paz, and Edgar A. Márquez
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General Chemical Engineering ,General Chemistry ,Library and Information Sciences ,Computer Science Applications - Published
- 2023
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24. In Silico Searching for Alternative Lead Compounds to Treat Type 2 Diabetes through a QSAR and Molecular Dynamics Study
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Nicolás Cabrera, Sebastián A. Cuesta, José R. Mora, Luis Calle, Edgar A. Márquez, Roland Kaunas, and José Luis Paz
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free fatty acid receptor 1 ,type 2 diabetes ,molecular dynamics ,molecular docking ,agonits of FFA1 ,Pharmacy and materia medica ,RS1-441 - Abstract
Free fatty acid receptor 1 (FFA1) stimulates insulin secretion in pancreatic β-cells. An advantage of therapies that target FFA1 is their reduced risk of hypoglycemia relative to common type 2 diabetes treatments. In this work, quantitative structure–activity relationship (QSAR) approach was used to construct models to identify possible FFA1 agonists by applying four different machine-learning algorithms. The best model (M2) meets the Tropsha’s test requirements and has the statistics parameters R2 = 0.843, Q2CV = 0.785, and Q2ext = 0.855. Also, coverage of 100% of the test set based on the applicability domain analysis was obtained. Furthermore, a deep analysis based on the ADME predictions, molecular docking, and molecular dynamics simulations was performed. The lipophilicity and the residue interactions were used as relevant criteria for selecting a candidate from the screening of the DiaNat and DrugBank databases. Finally, the FDA-approved drugs bilastine, bromfenac, and fenofibric acid are suggested as potential and lead FFA1 agonists.
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- 2022
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25. Synthesis of benzoxazoles via a silver mediated oxidation
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Chloe D. Wong, Kimiya Ganjooi, Maetja Verbarendse, Jessica M. Travis, Mark H. S. Troftgruben, Hannah R. Mora, Isabella Oldenburg, Robert Lammert, Horacio Lazaro, and Scott Eagon
- Subjects
Organic Chemistry - Abstract
A silver carbonate-based method to synthesize benzoxazoles from imines has been developed. The reaction is extremely mild, tolerates several heterocycles and functional groups, and provides highly functionalized benzoxazoles in modest to good yields. The reaction proceeds in an array of solvents and atmospheric conditions, demonstrating the robustness of this oxidation method and its ability to provide an alternative method for the easy preparation and isolation of these bioactive compounds.
- Published
- 2022
- Full Text
- View/download PDF
26. Synthesis, In Vitro, and In Silico Analysis of the Antioxidative Activity of Dapsone Imine Derivatives
- Author
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Ricardo Guzmán-Ávila, Mayra Avelar, Edgar A. Márquez, Julio C. Rivera-Leyva, José R. Mora, Virginia Flores-Morales, and Jesús Rivera-Islas
- Subjects
dapsone imines ,dapsone-derivatives ,antioxidant in vitro ,Organic chemistry ,QD241-441 - Abstract
Dapsone (DDS) is an antibacterial drug with well-known antioxidant properties. However, the antioxidant behavior of its derivatives has not been well explored. In the present work, the antioxidant activity of 10 dapsone derivatives 4-substituted was determined by an evaluation in two in vitro models (DPPH radical scavenging assay and ferric reducing antioxidant power). These imine derivatives 1–10 were obtained through condensation between DDS and the corresponding aromatic aldehydes 4-substuited. Three derivatives presented better results than DDS in the determination of DPPH (2, 9, and 10). Likewise, we have three compounds with better reducing activity than dapsone (4, 9, and 10). In order to be more insight, the redox process, a conceptual DFT analysis was carried out. Molecular descriptors such as electronic distribution, the total charge accepting/donating capacity (I/A), and the partial charge accepting/donating capacity (ω+/ω−) were calculated to analyze the relative donor-acceptor capacity through employing a donor acceptor map (DAM). The DFT calculation allowed us to establish a relationship between GAPHOMO-LUMO and DAM with the observed antioxidant effects. According to the results, we concluded that compounds 2 and 3 have the lowest Ra values, representing a good antioxidant behavior observed experimentally in DPPH radical capturing. On the other hand, derivatives 4, 9, and 10 display the best reducing capacity activity with the highest ω− and Rd values. Consequently, we propose these compounds as the best antireductants in our DDS imine derivative series.
- Published
- 2021
- Full Text
- View/download PDF
27. Disinfection procedure for stem cuttings and in vitro production of axillary buds for the Persian lime sanitation
- Author
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null Humberto Estrella-Maldonado, null Jesús R. Mora Solís, and null Cynthia G. Rodríguez-Quibrera
- Subjects
General Earth and Planetary Sciences ,General Environmental Science - Abstract
The research work covered the in vitro establishment of Persian lime nodal segments using a twig disinfection protocol, and their culture on Murashige and Skoog (MS) culture media supplemented with antibiotics (Estrepto-Ler® and Rifampicin) and fungicide (Chlorothalonil). The axillary buds production was performed cultured the nodal segments without contamination signs on MS culture media enriched with two cytokinins (6-BAP and Kinetin) at different concentrations. Results showed that 52 % of the nodal segments did not show signs of in vitro contamination when the twig submerged in 20% chlorine for 15 min during disinfection process and nodal segments were grown in MS culture medium supplemented with 2 mg L-1 of Rifampicin and fungicide Chlorothalonil. Interestingly, MS culture medium enriched with 6-BAP (0.5 mg L-1) + Kinetin (0.5 mg L-1) turned out to be the best combination to achieve that 78 % of nodal segments promoted 1 to 2 axillary buds.
- Published
- 2022
- Full Text
- View/download PDF
28. Comparative Study of Clinical Outcomes of Severe and Critical COVID 19 Patients Who Underwent and Did Not Undergo Hemoperfusion Admitted in a Referral Hospital
- Author
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M.W. Tibubos, R.M. Royeca, G. Ong-Cabrera, P.R. Evangelista, M.C. Orden, A.P. Estabillo, and R. Mora
- Published
- 2023
- Full Text
- View/download PDF
29. DeWAFF: A novel image abstraction approach to improve the performance of a cell tracking system.
- Author
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S. Calderon, A. Saenz, R. Mora, Francisco Siles, I. Orozco, and María E. Buemi
- Published
- 2015
- Full Text
- View/download PDF
30. In Silico Screening of the DrugBank Database to Search for Possible Drugs against SARS-CoV-2
- Author
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Sebastián A. Cuesta, José R. Mora, and Edgar A. Márquez
- Subjects
SARS-CoV-2 ,QSAR ,docking analysis ,DrugBank ,molecular dynamics ,Organic chemistry ,QD241-441 - Abstract
Coronavirus desease 2019 (COVID-19) is responsible for more than 1.80 M deaths worldwide. A Quantitative Structure-Activity Relationships (QSAR) model is developed based on experimental pIC50 values reported for a structurally diverse dataset. A robust model with only five descriptors is found, with values of R2 = 0.897, Q2LOO = 0.854, and Q2ext = 0.876 and complying with all the parameters established in the validation Tropsha’s test. The analysis of the applicability domain (AD) reveals coverage of about 90% for the external test set. Docking and molecular dynamic analysis are performed on the three most relevant biological targets for SARS-CoV-2: main protease, papain-like protease, and RNA-dependent RNA polymerase. A screening of the DrugBank database is executed, predicting the pIC50 value of 6664 drugs, which are IN the AD of the model (coverage = 79%). Fifty-seven possible potent anti-COVID-19 candidates with pIC50 values > 6.6 are identified, and based on a pharmacophore modelling analysis, four compounds of this set can be suggested as potent candidates to be potential inhibitors of SARS-CoV-2. Finally, the biological activity of the compounds was related to the frontier molecular orbitals shapes.
- Published
- 2021
- Full Text
- View/download PDF
31. Patrones de susceptibilidad de gramnegativos en aislamientos nosocomiales en un hospital de tercer nivel de atención pediatrica: análisis de su frecuencia y prevalencia en 2 periodos de tiempo (2006 vs. 2012)
- Author
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J.J. Coria Lorenzo, V.M. Pérez Robles, G. Pérez Avendaño, M. Torres García, R. Mora Suárez, A. Ojeda Sánchez, Y. Sánchez Flores, A. Vázquez Flores, and R.L. Aguilar Torres
- Subjects
Gramnegativos ,Resistencia antibiótica ,Infecciones asociadas a la atención a la salud ,Gynecology and obstetrics ,RG1-991 - Abstract
Introducción: Los patógenos gramnegativos se han señalado en la literatura como los principales causantes de infecciones asociadas a la atención a la salud. Material y métodos: Analizamos los resultados en cuanto a resistencia antimicrobiana de los principales patógenos gramnegativos obtenidos por diversos métodos de cultivo recabados mediante un sistema de vigilancia epidemiológica de control de las infecciones asociadas a la atención a la salud durante todo el 2006 para compararlos con los obtenidos en el 2012. Resultados: Identificamos 10 patógenos gramnegativos que sumaron un total de 387 aislamientos, con una prevalencia mayor en el 2012 (0.37) vs. 2006 (0.36). Destacaron 4 patógenos, en orden de importancia: Klebsiella pneumoniae (113-29.1%), Escherichia coli (88-22.7%), Enterobacter cloacae (65-16.7%) y Pseudomonas aeruginosa (63-16.2%). Hubo otros con menos aislamientos, pero que en conjunto estaban dentro del grupo de patógenos «ESKAPE-E» (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa y Enterobacter sp.). Estos son causantes de infecciones asociadas a la atención de la salud desde el 2006, pero en menor proporción de eventos y con mejor susceptibilidad antimicrobiana. A diferencia del 2012 donde las resistencias a la mayoría de los antibióticos aumentó en poco más del 20%. Hubo alerta de multirresistencia sobre todo para Klebsiella pneumoniae, Escherichia coli y Klebsiella oxytoca. Pocos antibióticos (imipenem, meropenem, gentamicina y amikacina) mantuvieron su perfil de actividad en ambos periodos, y otros como ertapenem y quinolonas que no se usaban en el 2006, se mostraron con buena susceptibilidad antimicrobiana en el 2012. Conclusiones: Los patógenos «ESKAPE-E» son un problema real de salud pública y la multirresistencia antibiótica les permite evadir muchas de las opciones terapéuticas disponibles. Aunado al hecho de que no hay nuevos antimicrobianos, el realizar estudios y creas mapas de resistencias bacterianas en nuestras instituciones nos puede ayudar a tomar mejores decisiones al iniciar una terapéutica empírica.
- Published
- 2016
- Full Text
- View/download PDF
32. Prevalencia y trascendencia de los hallazgos extracardíacos encontrados en resonancia magnética de corazón
- Author
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J.P. Mora-Encinas, B. Martín-Martín, J. Nogales-Montero, R. Mora-Monago, and J. Asensio Romero
- Subjects
Corazón ,Hallazgos incidentales ,Informe ,Resonancia magnética ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Objetivos: Valorar el número de lesiones incidentales detectadas por resonancia magnética (RM) cardíaca, establecer el porcentaje de hallazgos incluidos en el informe y definir el porcentaje de lesiones extracardíacas con implicancia en el manejo del paciente. Materiales y métodos: Se revisaron retrospectivamente 918 RM de corazón, realizadas desde mayo de 2006 hasta marzo de 2015, en busca de hallazgos extracardíacos. Estos fueron clasificados en nada/poco relevantes o relevantes, y en relación causa-efecto con la sintomatología cardíaca. Resultados: Se encontraron 271 hallazgos extracardíacos. El 35,7% resultó relevante y el 18,8% tenía una relación de causa-efecto con la sintomatología cardíaca. Los hallazgos extracardíacos relevantes fueron informados en el 58,4% de los casos y los poco/nada relevantes en el 26,6%. Discusión: Diferentes muestras poblacionales y protocolos de RM cardíaca pueden condicionar los porcentajes de los hallazgos extracardíacos detectados. Además, el análisis de estas imágenes tiene peculiaridades que requieren conocimiento y entrenamiento para una correcta valoración. Conclusión: Se detectaron hallazgos extracardíacos de diversa relevancia en un 26,4% de los pacientes. Analizar estos hallazgos y establecer su valoración es parte fundamental del informe radiológico de la RM cardíaca.
- Published
- 2016
- Full Text
- View/download PDF
33. The AAPS Journal Theme Issue: Compendium of Immunogenicity Risk Assessments: an Industry Guidance Built on Experience and Published Work
- Author
-
Johanna R. Mora and Susan M. Richards
- Subjects
Pharmaceutical Science - Published
- 2023
- Full Text
- View/download PDF
34. Air pollution exposure when cooking with electricity compared to gas
- Author
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Carlos F. Gould, Lissete Dávila, M. Lorena Bejarano, Marshall Burke, Darby W. Jack, Samuel B. Schlesinger, José R. Mora, and Alfredo Valarezo
- Abstract
We report small-sample evidence from a randomized experiment among a set of urban Ecuadorian households who owned both electric induction and gas stoves. We randomly assigned households to cook only with one stove during a prescribed two-day monitoring period, and then cook only with the other stove in a subsequent two-day period. The order of stove use was randomized, and air pollution was measured during each period. We found that mean 48-hour personal NO2exposure was 9.9 ppb higher (95% CI, 4.5-15.3) — a 50% increase over the 48-hour induction mean — when households were randomized to gas as compared to induction. Mean kitchen area NO2concentrations were 1 ppb higher (95% CI, 0.4-2.1) (a 6% increase) and mean personal PM2.5exposure was 11μgm−3higher (95% CI, -0.1-22.8) (a 44% increase) during study periods when randomized to gas. We use time-resolved cooking and pollution data to illustrate that these differences are driven by LPG cooking, which was associated with a 5.0 ppb increase in 5-minute average NO2kitchen area concentrations (95% CI, 3.4-6.7) and a 20.8μgm−3increase in 5-minute average personal PM2.5exposure (95% CI 8.9-32.6). In contrast, cooking with induction was not associated with changes to short-term NO2kitchen area concentrations, though it was associated with short-term increased personal PM2.5exposure (10.8, 95% CI, 5.7-15.9).
- Published
- 2023
- Full Text
- View/download PDF
35. Objective measurements of image quality in synchrotron radiation phase-contrast imaging versus digital mammography.
- Author
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Y. Ruiz-Gonzalez, M. Perez-Diaz, D. Martínez-Aguila, M. Diaz-Barreto, I. Fleitas, R. Mora-Machado, Luigi Rigon, Giuliana Tromba, and P. Bregant
- Published
- 2016
- Full Text
- View/download PDF
36. Computational Molecular Modeling of Pin1 Inhibition Activity of Quinazoline, Benzophenone, and Pyrimidine Derivatives
- Author
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Nicolás Cabrera, Jose R. Mora, and Edgar A. Marquez
- Subjects
Chemistry ,QD1-999 - Abstract
Pin1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1) is directly involved in cancer cell-cycle regulation because it catalyses the cis-trans isomerization of prolyl amide bonds in proteins. In this sense, a modeling evaluation of the inhibition of Pin1 using quinazoline, benzophenone, and pyrimidine derivatives was performed by using multilinear, random forest, SMOreg, and IBK regression algorithms on a dataset of 51 molecules, which was divided randomly in 78% for the training and 22% for the test set. Topological descriptors were used as independent variables and the biological activity (pIC50) as a dependent variable. The most robust individual model contained 9 features, and its predictive capability was statistically validated by the correlation coefficient for adjusting, 10-fold cross validation, test set, and bootstrapping with values of 0.910, 0.819, 0.841, and 0.803, respectively. In order to improve the prediction of the pIC50 values, the aggregation of the individual models was performed through the construction of an ensemble, and the most robust one was constructed by two individual models (LR3 and RF1) by applying the IBK algorithm, and a substantial improvement in predictive performance is reflected in the values of R2ADJ = 0.982, Q2CV = 0.962, and Q2EXT = 0.918. Mean square errors
- Published
- 2019
- Full Text
- View/download PDF
37. Tratamiento de Flegmasía Cerúlea Dolens con Trombólisis; Reporte de Caso
- Author
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Laura Alejandra Peña, L R Mora Posada, C G Hernández Forero, and F Villegas González
- Subjects
Trombosis ,edema ,isquemia ,anticoagulantes ,terapia trombolítica ,Science ,Science (General) ,Q1-390 - Abstract
La Flegmasía Cerúlea Dolens es una complicación rara y severa de la trombosis venosa profunda, que se manifiesta clínicamente con edema profuso, dolor y cianosis del miembro inferior afectado. La obstrucción masiva del sistema venoso determina un aumento de la presión de los compartimentos de la extremidad, que finalmente compromete la circulación arterial. Su tratamiento debe ser agresivo para evitar la gangrena y/o la muerte. Presentamos el caso de una paciente atendida en la Clínica La Sagrada Familia, Armenia – Colombia, quien consultó por cuadro clínico de edema progresivo en miembro inferior izquierdo, encontrando cambios isquémicos en falanges distales y edema grado III en miembro inferior izquierdo, con reporte de dúplex venoso con trombosis venosa profunda iliofemoral extensa izquierda y dúplex arterial con reducción de los flujos arteriales secundario a edema severo de tejidos blandos, se indica flebografía con trombólisis venosa por catéter regional en miembro inferior izquierdo con infusión continua de trombolítico. Con respectivos controles angiográficos a las 24 y 48 horas con recanalización del 80% de las venas iliaca, femoral y poplítea, se suspendió infusión y se retiró catéter, continuó anticoagulación con heparina no fraccionada hasta lograr paso a anticoagulación oral con posterior egreso hospitalario dado su evolución satisfactoria.
- Published
- 2018
- Full Text
- View/download PDF
38. Applications of Photogrammetry for Analysis of Forest Plantations. Preliminary study: Analysis of individual trees
- Author
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R. Mora, A. Barahona, and H. Aguilar
- Subjects
Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Applied optics. Photonics ,TA1501-1820 - Abstract
This paper presents a method for using high detail volumetric information, captured with a land based photogrammetric survey, to obtain information from individual trees. Applying LIDAR analysis techniques it is possible to measure diameter at breast height, height at first branch (commercial height), basal area and volume of an individual tree. Given this information it is possible to calculate how much of that tree can be exploited as wood. The main objective is to develop a methodology for successfully surveying one individual tree, capturing every side of the stem a using high resolution digital camera and reference marks with GPS coordinates. The process is executed for several individuals of two species present in the metropolitan area in San José, Costa Rica, Delonix regia (Bojer) Raf. and Tabebuia rosea (Bertol.) DC., each one with different height, stem shape and crown area. Using a photogrammetry suite all the pictures are aligned, geo-referenced and a dense point cloud is generated with enough detail to perform the required measurements, as well as a solid tridimensional model for volume measurement. This research will open the way to develop a capture methodology with an airborne camera using close range UAVs. An airborne platform will make possible to capture every individual in a forest plantation, furthermore if the analysis techniques applied in this research are automated it will be possible to calculate with high precision the exploit potential of a forest plantation and improve its management.
- Published
- 2015
- Full Text
- View/download PDF
39. Critical Importance of Emphasising Working-Class Parents in Digital Inclusion: A US Latino/a Case Study.
- Author
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Cláudia Silva, Adolfo R. Mora, and Joseph D. Straubhaar
- Published
- 2018
- Full Text
- View/download PDF
40. Molecular Docking and Molecular Dynamics Studies of SARS-CoV-2 Inhibitors: Crocin, Digitoxigenin, Beta-Eudesmol and Favipiravir: Comparative Study
- Author
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G. C. Lorena, José R. Mora, L. H. Mendoza-Huizar, G. S. Morán, Sebastián Cuesta, Assia Belhassan, Tahar Lakhlifi, P. F. Carlos, and Mohammed Bouachrine
- Subjects
Protease ,biology ,Chemistry ,Stereochemistry ,medicine.medical_treatment ,Protein Data Bank (RCSB PDB) ,Active site ,Favipiravir ,Biochemistry ,Crocin ,chemistry.chemical_compound ,Digitoxigenin ,Docking (molecular) ,biology.protein ,medicine ,Molecular Medicine ,Binding site ,Molecular Biology ,Biotechnology - Abstract
In this study, Crocin, Digitoxigenin, Beta-Eudesmol, and Favipiravir were docked in the active site of SARS-CoV-2 main protease (PDB code: 6LU7). The docking study was followed by Molecular Dynamics simulation. The result indicates that Crocin and Digitoxigenin are the structures with the best affinity in the studied enzyme's binding site. Still, Molecular Dynamics simulation showed that Digitoxigenin is the molecule that fits better in the active site of the main protease. Therefore, this molecule could have a more potent antiviral treatment of COVID-19 than the other three studied compounds. © 2021 by the authors.
- Published
- 2021
- Full Text
- View/download PDF
41. Fast Pyrolysis as a Valorization Mechanism for Banana Rachis and Low‐Density Polyethylene Waste
- Author
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Daniela Almeida Streitwieser, Sebastián Salazar, María L. Bejarano, Daniela Oña Villamil, José R. Mora, and Erika Gutierrez
- Subjects
Low-density polyethylene ,Materials science ,Residual biomass ,General Chemical Engineering ,General Chemistry ,Pulp and paper industry ,Pyrolysis ,Industrial and Manufacturing Engineering ,Mechanism (sociology) - Published
- 2021
- Full Text
- View/download PDF
42. Solvent randomness and intramolecular considerations of optical responses in four-wave mixing
- Author
-
Patricio Espinoza-Montero, Lenin A. González-Paz, Edgar Marquez, Marcos Loroño, Joan Vera-Villalobos, José R. Mora, Ysaias J. Alvarado, and José Luis Paz
- Subjects
Coupling ,Physics::Biological Physics ,Quantitative Biology::Biomolecules ,Materials science ,Molecular physics ,Atomic and Molecular Physics, and Optics ,Condensed Matter::Soft Condensed Matter ,Solvent ,Four-wave mixing ,Intramolecular force ,Thermal ,Physics::Chemical Physics ,Solvent effects ,Random variable ,Randomness - Abstract
We determined the optical profiles of a molecular system coupled with a thermal bath in presence of intramolecular coupling. Solvent effects were explicitly considered as a random variable by model...
- Published
- 2021
- Full Text
- View/download PDF
43. Molecular simulation of the (GPx)-like antioxidant activity of ebselen derivatives through machine learning techniques
- Author
-
Luis Calle, Yovani Marrero-Ponce, and José R. Mora
- Subjects
chemistry.chemical_classification ,Antioxidant ,Chemistry ,Ebselen ,General Chemical Engineering ,medicine.medical_treatment ,Glutathione peroxidase ,Molecular simulation ,General Chemistry ,Condensed Matter Physics ,Redox ,chemistry.chemical_compound ,Biochemistry ,Organoselenium Compound ,Modeling and Simulation ,medicine ,General Materials Science ,Information Systems ,Initial rate - Abstract
The selenoenzyme glutathione peroxidase (GPx) like activity of stable organoselenium compounds has been evaluated through the initial rate (ν0) of the reduction reaction of H2O2, Cum-OOH, and t-BuO...
- Published
- 2021
- Full Text
- View/download PDF
44. Manuelita: La amante revolucionaria de Simón Bolívar
- Author
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Manuel R. Mora
- Published
- 2016
45. Study of potential inhibition of the estrogen receptor α by cannabinoids using an in silico approach: Agonist vs antagonist mechanism
- Author
-
Cristian Rocha-Roa, Eliceo Cortes, Sebastián A. Cuesta, José R. Mora, José L. Paz, Máryury Flores-Sumoza, and Edgar A. Márquez
- Subjects
Health Informatics ,Computer Science Applications - Abstract
Breast cancer is the main cancer type with more than 2.2 million cases in 2020, and is the principal cause of death in women; with 685000 deaths in 2020 worldwide. The estrogen receptor is involved at least in 70% of breast cancer diagnoses, and the agonist and antagonist properties of the drug in this receptor play a pivotal role in the control of this illness. This work evaluated the agonist and antagonist mechanisms of 30 cannabinoids by employing molecular docking and dynamic simulations. Compounds with docking scores -8 kcal/mol were analyzed by molecular dynamic simulation at 300 ns, and relevant insights are given about the protein's structural changes, centered on the helicity in alpha-helices H3, H8, H11, and H12. Cannabicitran was the cannabinoid that presented the best relative binding-free energy (-34.96 kcal/mol), and based on rational modification, we found a new natural-based compound with relative binding-free energy (-44.83 kcal/mol) better than the controls hydroxytamoxifen and acolbifen. Structure modifications that could increase biological activity are suggested.
- Published
- 2022
46. Searching glycolate oxidase inhibitors based on QSAR, molecular docking, and molecular dynamic simulation approaches
- Author
-
Jose R Mora, Nicolas Cabrera, Noel Pérez, Sebastian Cuesta, Yovani Marrero-Ponce, Ernesto Contreras-Torres, Edgar Marquez, Patricio Javier Espinoza-Montero, and José Luis Paz
- Subjects
Molecular Docking Simulation ,Alcohol Oxidoreductases ,Multidisciplinary ,Quantitative Structure-Activity Relationship ,Molecular Dynamics Simulation - Abstract
Primary hyperoxaluria type 1 (PHT1) treatment is mainly focused on inhibiting the enzyme glycolate oxidase, which plays a pivotal role in the production of glyoxylate, which undergoes oxidation to produce oxalate. When the renal secretion capacity exceeds, calcium oxalate forms stones that accumulate in the kidneys. In this respect, detailed QSAR analysis, molecular docking, and dynamics simulations of a series of inhibitors containing glycolic, glyoxylic, and salicylic acid groups have been performed employing different regression machine learning techniques. Three robust models with less than 9 descriptors—based on a tenfold cross (Q2CV) and external (Q2EXT) validation—were found i.e., MLR1 (Q2CV = 0.893, Q2EXT = 0.897), RF1 (Q2CV = 0.889, Q2EXT = 0.907), and IBK1 (Q2CV = 0.891, Q2EXT = 0.907). An ensemble model was built by averaging the predicted pIC50 of the three models, obtaining a Q2EXT = 0.933. Physicochemical properties such as charge, electronegativity, hardness, softness, van der Waals volume, and polarizability were considered as attributes to build the models. To get more insight into the potential biological activity of the compouds studied herein, docking and dynamic analysis were carried out, finding the hydrophobic and polar residues show important interactions with the ligands. A screening of the DrugBank database V.5.1.7 was performed, leading to the proposal of seven commercial drugs within the applicability domain of the models, that can be suggested as possible PHT1 treatment.
- Published
- 2022
47. Comparative Study of Clinical Outcomes of Severe and Critical COVID-19 Patients With and Without Hemoperfusion Admitted in a Referral Hospital
- Author
-
M W Tibubos, R M Royeca, P R Evangelista, M C Orden, G Ong-Cabrera, A P Estabillo, and R Mora
- Published
- 2022
- Full Text
- View/download PDF
48. Metal Oxide/Sulphide-Based Nanocatalysts in Biodiesel Synthesis
- Author
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Juan S. Villarreal and José R. Mora
- Published
- 2022
- Full Text
- View/download PDF
49. Mapping variation of handsheet properties within loblolly pine trees
- Author
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Christian R. Mora, Joseph Dahlen, Finto Antony, and Laurence R. Schimleck
- Subjects
040101 forestry ,Variation (linguistics) ,0211 other engineering and technologies ,0401 agriculture, forestry, and fisheries ,Environmental science ,General Materials Science ,Forestry ,04 agricultural and veterinary sciences ,02 engineering and technology ,Atmospheric sciences ,Loblolly pine ,021101 geological & geomatics engineering - Abstract
Within-tree variation of four handsheet properties (burst index, sheet density, STFI short-span compression strength (STFI) and tensile index) was mapped for loblolly pine trees aged 13 and 22 years using NIR predicted handsheet property data (representing an average of 18 trees for each age). All within-tree maps were similar demonstrating a radial decrease in handsheet properties at all heights, with sheet density and tensile index having the greatest within-tree variation. The corewood zone had the highest values for all properties, while the lowest values were observed in a region consistent with juvenile and transitional outerwood as defined by Burdon et al. (2004). The maps are also similar to, but the inverse of, maps reported in prior studies for density and tracheid coarseness and wall thickness. Relationships amongst the examined handsheet properties and wood and tracheid properties explains the overall similarities of the different maps. The maps provide a representation of within-tree variation of important paper properties at two different ages. An understanding of how these properties vary within loblolly pine trees can aid in better utilization of forest resources.
- Published
- 2021
- Full Text
- View/download PDF
50. Agenesia carotídea y ausencia de bifurcación, asintomáticas e incidental, durante el estudio de deterioro cognitivo: a propósito de un caso
- Author
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E. Cancho García and R. Mora Monago
- Subjects
business.industry ,Medicine ,Neurology (clinical) ,business - Published
- 2021
- Full Text
- View/download PDF
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