133 results on '"Quddus MR"'
Search Results
2. Genetic Variability, Heritability, Correlation and Path Coefficient Studies for Yield and Yield Components of Some Promising Rice Hybrids
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Akter, A, primary, Hasan, MJ, primary, Latif, MA, primary, Kulsum, MU, primary, Biswas, PL, primary, Rahman, MH, primary, Majumder, RR, primary, Lipi, LF, primary, Quddus, MR, primary, Akter, F, primary, and Ara, A, primary
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- 2020
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3. RT-PCR based detection and adaptation of foot and mouth disease virus serotype A in BHK-21 cell line
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Quddus, MR, primary, Hossen, ML, primary, Chowdhury, MMR, primary, Chakrobarty, T, primary, Mahmud, S, primary, Nazir, KHMNH, primary, Nasiruddin, KM, primary, and Rahman, MB, primary
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- 2016
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4. Donor Site Evaluation After Lingual Mucosal Graft Harvest for Urethroplasty
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Asaduzzaman, M, primary, Quddus, MR, primary, Islam, MS, primary, Ahmed, K, primary, Rosy, SK, primary, and Bhuiyan, AKMZI, primary
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- 2013
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5. Abstract P6-01-04: Ductal Carcinoma In-Situ Associated with Triple-Negative Invasive Breast Carcinoma Is Often Immunohistochemically Distinct from Invasive Component
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Simon, RA, primary, Karim, TA, additional, Zhang, C, additional, Steinhoff, MM, additional, Sung, CJ, additional, and Quddus, MR., additional
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- 2010
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6. Hyper reactive malarial splenomegaly (HMS).
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Khan, MK, primary, Kamruzzaman, M, additional, and Quddus, MR, additional
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- 2007
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7. High nuclear grade, frequent mitotic activity, cyclin d1 and p53 overexpression are associated with stromal invasion in mammary intracystic papillary carcinoma.
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Zhang C, Zhang P, Hao J, Quddus MR, Steinhoff MM, and Sung CJ
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Stromal invasion is identified with difficulty in routine hematoxylin-eosin-stained sections of core needle biopsy specimens from mammary intracystic papillary carcinomas. The goal of this study was to determine if nuclear grade, mitotic activity, and immunohistochemical stains for p53 and cyclin D1 would assist in differentiating intracystic papillary carcinomas without stromal invasion (ICPC) from tumors with stromal invasion (ICPC-INVA). Eight cases of ICPC and 12 cases of ICPC-INVA were reviewed. Hematoxylin-eosin slides were examined to determine the histologic features. Immunohistochemistry was performed using monoclonal antibodies to human p53 and cyclin D1. Fisher's exact test was used to compare the nuclear grade, mitotic activity, and immunoreactivity between ICPC and ICPC-INVA. High nuclear grade was more often associated with ICPC-INVA than with ICPC, although the difference was not statistically significant (p = 0.069). Frequent mitotic activity was associated with ICPC-INVA more than with ICPC (p = 0.0198). All cases of ICPC were negative for either p53 or cyclin D1, whereas 7 of 12 cases (58.3%) of ICPC-INVA were positive for either cyclin D1 alone (3 cases), p53 alone (3 cases), or both cyclin D1 and p53 (1 case) (p = 0.0147). Identical nuclear grade, mitotic activity, and immunostaining patterns were seen in the intracystic and the invasive components, and in the core biopsy and the excision of the same tumor. When any one of the positive indicators (high nuclear grade, frequent mitotic activity, or positive immunostains for cyclin D1 and/or p53) was present, the positive predictive value for stromal invasion was 91.7%. When none of the positive indicators was present, the negative predictive value was 87.5%. [ABSTRACT FROM AUTHOR]
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- 2005
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8. Short communication atypical adenomyoepithelioma of the breast: diagnostic problems and practical approaches in core needle biopsy.
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Cunxian Zhang F, Quddus MR, and Sung CJ
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- 2004
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9. A 54-year-old woman with bilateral pelvic masses.
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Carter A, Quddus MR, Sung CJ, and Lawrence WD
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- 2005
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10. Analysis of Concordance Between Next-Generation Sequencing Assessment of Microsatellite Instability and Immunohistochemistry-Mismatch Repair From Solid Tumors.
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Ali-Fehmi R, Krause HB, Morris RT, Wallbillich JJ, Corey L, Bandyopadhyay S, Kheil M, Elbashir L, Zaiem F, Quddus MR, Abada E, Herzog T, Karnezis AN, Antonarakis ES, Kasi PM, Wei S, Swensen J, Elliott A, Xiu J, Hechtman J, Spetzler D, Abraham J, Radovich M, Sledge G, Oberley MJ, and Bryant D
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- Humans, Female, Male, Middle Aged, Aged, Microsatellite Instability, High-Throughput Nucleotide Sequencing, DNA Mismatch Repair genetics, Immunohistochemistry methods, Neoplasms genetics
- Abstract
Purpose: The new CAP guideline published in August 2022 recommends using immunohistochemistry (IHC) to test for mismatch repair defects in gastroesophageal (GE), small bowel (SB), or endometrial carcinoma (EC) cancers over next-generation sequencing assessment of microsatellite instability (NGS-MSI) for immune checkpoint inhibitor (ICI) therapy eligibility and states there is a preference to use IHC over NGS-MSI in colorectal carcinoma (CRC)., Methods: We assessed the concordance of NGS-MSI and IHC-MMR from a very large cohort across the spectrum of solid tumors., Results: Of the over 190,000 samples with both NGS-MSI and IHC-MMR about 1,160 were initially flagged as discordant. Of those samples initially flagged as discordant, 50.9% remained discordant after being reviewed by an additional pathologist. This resulted in a final discordance rate of 0.31% (590/191,767). Among CRC, GE, SB and EC, 55.4% of mismatch repair proficient/MSI high (MMRp/MSI-H) tumors had at least one somatic pathogenic mutation in an MMR gene or POLE . Mismatch repair deficient/microsatellite stable (MMRd/MSS) tumors had a significantly lower rate of high tumor mutational burden than MMRp/MSI-H tumors. Across all solid tumors, MMRd/MSI-H tumors had significantly longer overall survival (OS; hazard ratio [HR], 1.47, P < .001) and post-ICI survival (HR, 1.82, P < .001) as compared with MMRp/MSS tumors. The OS for the MMRd/MSS group was slightly worse compared to the MMRp/MSI-H tumors, but this difference was not statistically significant (HR, 0.73, P = .058), with a similar pattern when looking at post-ICI survival (HR, 0.43, P = .155)., Conclusion: This study demonstrates that NGS-MSI is noninferior to IHC-MMR and can identify MSI-H tumors that IHC-MMR is unable to detect and conversely IHC-MMR can identify MMRd tumors that NGS-MSI misses.
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- 2024
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11. Ever Expanding Morphologic Patterns of Mesonephric-like Adenocarcinomas of the Uterine Corpus: A Report of Two Tumors and a Brief Review of the Literature.
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Quddus MR, Mathews CA, and Singh K
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- Humans, Female, Diagnosis, Differential, Endometrial Neoplasms pathology, Endometrial Neoplasms diagnosis, Biomarkers, Tumor analysis, Middle Aged, Adenocarcinoma, Mucinous pathology, Adenocarcinoma, Mucinous diagnosis, Uterine Neoplasms pathology, Uterine Neoplasms diagnosis, Carcinosarcoma pathology, Carcinosarcoma diagnosis, Immunohistochemistry, Aged, Goblet Cells pathology, Adenocarcinoma pathology, Adenocarcinoma diagnosis
- Abstract
Mesonephric-like adenocarcinoma (MLA) of the endometrium shows a variety of morphologic appearances, including small glands, tubules with eosinophilic materials in the lumen, prominent papillary patterns, spindled cells, solid formations, and corded and hyalinized patterns. Unique morphology, characteristic immunohistochemical staining patterns, molecular alterations, and awareness of the pathologists make it possible to identify this tumor accurately. This report of two additional morphologic patterns, intestinal goblet cells mimicking intestinal-type mucinous carcinoma and squamous differentiation with spindle and epithelioid cells mimicking carcinosarcoma of the endometrium will expand the literature on MLA., Competing Interests: Declaration of Conflicting InterestsThe authors declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2024
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12. Invasive acantholytic anaplastic extramammary Paget disease: A previously unreported neoplasm in the vulva and review of the literature.
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Sta Ines FMG, Salinaro JR, Marchese M, Mathews CA, and Quddus MR
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This report describes the first documented invasive acantholytic anaplastic extramammary Paget disease (AAEMPD) of the vulva. An 87-year-old female presented with a recurrent vulvar lesion refractory to topical imiquimod and treated with multiple wide local excisions (WLE). Microscopic examination of the final WLE specimen revealed unique histologic features, primarily supra-basal intraepidermal acantholysis with epidermal papillomatosis and hyperkeratosis. The epidermis, composed of two distinct cell populations, exhibited full-thickness atypia. Paget cells with high mitotic activity were present in the basal and parabasal layers surrounding benign squamous cells in the mid-squamous mucosa. The histologic features were suspicious of the EMPD involving a warty lesion and/or invasive squamous cell carcinoma. In addition to the intraepidermal component, dermal invasion was also present with lymphovascular space invasion. Immunohistochemical studies (KRT7, HER2, and GATA3 reactivity in Paget cells, p63 negativity, and rare mucin in Paget cells) supported the diagnosis of acantholytic anaplastic EMPD. AAEMPD, a rare variant of EMPD, shares similar prognosis and behavior with the classic Paget disease. Recognition and accurate diagnosis of this subtype is crucial for optimal patient management, given distinct treatment strategies compared with other entities in the differential diagnosis., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Author(s).)
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- 2024
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13. Concurrent High-Grade Serous Carcinoma with Mucinous Differentiation and Ectopic Complete Molar Pregnancy of the Fallopian Tube: A Case Report.
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Ines FMGS, Al-Tarawneh B, Marchese M, Jansen C, De Paepe ME, Sung CJ, Tatevian N, Quddus MR, Lokich E, and Marketkar S
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- Humans, Female, Pregnancy, Hydatidiform Mole pathology, Hydatidiform Mole diagnosis, Fallopian Tubes pathology, Adult, Cystadenocarcinoma, Serous pathology, Cystadenocarcinoma, Serous surgery, Cystadenocarcinoma, Serous diagnosis, Cystadenocarcinoma, Serous genetics, Cell Differentiation, Pregnancy, Ectopic pathology, Pregnancy, Ectopic diagnosis, Pregnancy, Ectopic surgery, Fallopian Tube Neoplasms pathology, Fallopian Tube Neoplasms diagnosis, Fallopian Tube Neoplasms surgery
- Abstract
Objective: We report the first documented case of concurrent ectopic complete hydatidiform mole (CHM) and high-grade serous carcinoma (HGSC) of the fallopian tube, associated with unique histologic features and mutations in the HGSC., Case Report: The patient presented with pelvic pain and vaginal bleeding. Laboratory examination revealed a positive urine pregnancy test and high serum beta-human chorionic gonadotropin (β-hCG). Transvaginal ultrasound demonstrated a left adnexal mass suspicious for ectopic pregnancy. Salpingectomy was performed, and the fallopian tube, noted to be ruptured with a visible ectopic pregnancy, demonstrated chorionic villi with diffuse hydropic enlargement and mild trophoblast hyperplasia. p57/Kip2 immunohistochemical staining (IHC) showed loss of expression in villous cytotrophoblasts and stromal cells, confirming CHM. An incidental 0.5 cm focus of HGSC was identified in the fallopian tube, associated with serous tubal intraepithelial carcinoma (STIC). The tumor exhibited solid, transitional cell carcinoma-like, and acinar patterns, with intraluminal mucin highlighted by Alcian blue and PAS-D stains. Patient underwent staging surgery which resulted in the finding of a 0.7 cm HGSC in the left ovary with morphology concordant to the tubal mass, except for a pseudo-endometrioid pattern in the ovary. Notably, the HGSC is positive (2+, 90%) for FOLR1 antigen and harbored a pathogenic mutation (p.R273H) in exon 8 of the TP53 gene., Conclusion: This report emphasizes the crucial role of meticulous sampling and histopathologic examination of the fallopian tube, including the fimbriae, in all salpingectomy specimens. Furthermore, the case highlights the broad spectrum of morphologies encountered in HGSC, including mucinous differentiation. HGSC should be in the differential diagnosis when encountering mucin-producing high-grade carcinoma., (© 2024 by the Association of Clinical Scientists, Inc.)
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- 2024
14. Synchronous Epidermodysplasia Verruciformis and Intraepithelial Lesion of the Vulva Is Caused by Coinfection With Alpha-Human Papillomavirus and Beta-Human Papillomavirus Genotypes and Facilitated by Mutations in Cell-Mediated Immunity Genes.
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Ribeiro E Ribeiro R, Sung CJ, and Quddus MR
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- Humans, Female, Retrospective Studies, Adult, Vulvar Neoplasms virology, Vulvar Neoplasms genetics, Vulvar Neoplasms pathology, Middle Aged, Betapapillomavirus genetics, Vulva pathology, Vulva virology, Squamous Intraepithelial Lesions virology, Squamous Intraepithelial Lesions pathology, Squamous Intraepithelial Lesions genetics, Human Papillomavirus Viruses, Epidermodysplasia Verruciformis genetics, Epidermodysplasia Verruciformis virology, Epidermodysplasia Verruciformis pathology, Papillomavirus Infections virology, Papillomavirus Infections genetics, Papillomavirus Infections complications, Papillomavirus Infections pathology, Mutation, Alphapapillomavirus genetics, Genotype, Coinfection virology, Coinfection genetics, Coinfection pathology
- Abstract
Context.—: There have been exceedingly few reports of epidermodysplasia verruciformis (EV) or EV-like lesions in the vulva. We describe the first observation of vulvar lesions displaying synchronous EV-like histology and conventional high-grade squamous intraepithelial lesion (HSIL), a finding hitherto unreported in medical literature., Objectives.—: To describe this novel vulvar lesion with hybrid features of HSIL and EV, attempt to confirm the hypothesis of coinfection with α and β human papillomavirus (α-HPV and β-HPV) genotypes, and describe relevant underlying genetic mutations., Design.—: Cases were retrospectively selected from our institutional archive. Detailed review of clinical information, histologic examination, and whole genome sequencing (WGS) were performed., Results.—: Five samples from 4 different patients were included. Three of 4 patients had a history of either iatrogenic immune suppression or prior immune deficiency, and all 3 featured classic HSIL and EV changes within the same lesion. One patient had no history of immune disorders, presented with EV-like changes and multinucleated atypia of the vulva, and was the sole patient without conventional HSIL. By WGS, several uniquely mappable reads pointed toward infection with multiple HPV genotypes, including both α-HPVs and β-HPVs. Mutations in genes implicated in cell-mediated immunity, such as DOCK8, CARMIL2, MST1, and others, were also found., Conclusions.—: We provide the first description of vulvar lesions harboring simultaneous HSIL and EV features in the English-language literature, a phenomenon explained by coinfection with α-HPV and β-HPV genotypes. The finding of EV-like changes in a vulvar specimen should prompt assessment of the patient's immune status., Competing Interests: The authors have no relevant financial interest in the products or companies described in this article., (© 2024 College of American Pathologists.)
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- 2024
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15. Endometrial endometrioid adenocarcinoma with a malignant squamous component: is the unusual metastatic pattern unique of these tumors?
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Quddus MR, Ribeiro RRE, DiSilvestro JB, Sung CJ, and Singh K
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The FIGO scheme is currently applied for tumor grading of endometrioid adenocarcinoma. The current report presents a series of ten cases of endometrioid carcinomas that when applying the FIGO grading does not fully convey the true biological nature of the disease. The squamous component of these tumors is malignant; it constitutes the predominant invasive component, and it often metastasizes to unconventional sites. Half of the cohort developed distant disease recurrence within 2 years, even those with early-stage disease. Somatic mutations were analyzed, targeting 101 genes in all ten cases, and mutations in PTEN, MMR, PIK3CA, ATM, RB1, and TP53 genes were detected, often multiple mutations in the same case. None of the cases revealed unique molecular signatures or previously unreported gene mutations. Immunohistochemical staining for beta-catenin showed aberrant nuclear staining in eight of ten cases and remaining two showed cytoplasmic and membranous staining. Aggressive behavior and unusual sites of metastases are observed in this series even in low-grade tumor. The FIGO grading on smaller samples may be deceptive for these cases. Even if FIGO is applied, the pathology report should emphasize the malignant squamous component and its potential significance so that the gynecologic oncology team can formulate appropriate adjuvant treatment upfront. This case series argues that this histology should be regarded as a high-grade endometrioid carcinoma and can show unusual metastatic patterns. Further research is needed with more cases within this histologic subtype to guide recommendations on adjuvant therapies for this aggressive tumor type., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2024
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16. Human epidermal growth factor receptor-2 (HER2) expression in FIGO3 high-grade endometrial endometrioid carcinoma: Clinicopathologic characteristics and future directions.
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Abada E, Kim S, Jang H, Kheil M, Singh K, Bandyopadhyay S, Ali-Fehmi R, and Quddus MR
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- Humans, Female, Middle Aged, Aged, Adult, Neoplasm Grading, In Situ Hybridization, Fluorescence, Aged, 80 and over, Immunohistochemistry, Endometrial Neoplasms pathology, Endometrial Neoplasms genetics, Endometrial Neoplasms metabolism, Receptor, ErbB-2 biosynthesis, Receptor, ErbB-2 genetics, Receptor, ErbB-2 metabolism, Carcinoma, Endometrioid genetics, Carcinoma, Endometrioid pathology, Carcinoma, Endometrioid metabolism
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Objectives: To study the expression of HER2 in high-grade FIGO3 endometrial endometroid carcinoma (EEC) and to correlate our findings with the clinicopathologic characteristics of this tumor., Methods: HER2 expression by immunohistochemistry (IHC) was performed on 10% formalin-fixed paraffin embedded tissue on cases diagnosed as FIGO3 EEC. HER2 expression was interpreted as negative (0), low (1+ and 2+) or positive (3+) using similar criteria as in the breast. HER2 amplification by Fluorescence in situ hybridization (FISH) was performed on cases interpreted as 2+ and 3+ by IHC., Results: One hundred and forty-three FIGO3 EEC were identified. Of these, 70 (49%) cases were HER2 negative (IHC 0), and 73 (51%) cases expressed/amplified HER2 by IHC and/or FISH. Of the 73 cases expressing or amplifying HER2, 59 cases were IHC 1+, 12 cases were IHC 2+, and 2 cases were IHC 3+. FISH testing was performed in 12 cases. Only one of the two HER2 IHC 3+ cases showed HER2 gene amplification by FISH and the other 11 cases were not amplified. The 5-year overall survival (OS) rate for HER2 IHC 1+ cases was 92.20% (95% CI: 83.97-100.00), and the 5-year OS rate for HER2 IHC 2+/3+ cases was 89.50% (95% CI: 56.41-100.00)., Conclusion: Our findings indicate that about one half of FIGO3 EEC variably expresses HER2 and with the emerging concept of "HER2 low", anti-HER2 agents may be explored as potential therapeutic options in these patients, for possible survival benefits., Competing Interests: Declaration of competing interest All authors declare that they have no conflicts of interest related to this manuscript., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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17. Recurrent Primary Paget Disease of Vulva with Paget-Like Epithelial Cells in Papillary Dermis: Displaced or Invasion?
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Tamayo SC, Quddus MR, and Singh K
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- Female, Humans, Vulva pathology, Epithelial Cells pathology, Dermis pathology, Paget Disease, Extramammary pathology, Vulvar Neoplasms pathology
- Abstract
While histological diagnosis of Paget disease of vulva is mostly straightforward, identifying and confirming invasion can be challenging. Often invasion is accompanied by epidermal hyperplasia, marked inflammatory response and desmoplastic reaction. Diagnosis of invasion in Paget disease portends a poor outcome. We report findings from a recurrent primary vulvar Paget disease where overall histomorphology of possible invasive disease is unusual and raises a possibility of displacement of Paget cells in the dermis. We compare histology of the index case with known invasive vulvar Paget disease cases retrieved from our pathology archives. Unique histomorphology in the index case suggests a possibility of previous excision related dermal displacement of Paget cells., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2024
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18. Immunohistochemical findings and clinicopathological features of breast cancers with pathogenic germline mutations in Non-BRCA genes.
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Singh K, Scalia J, Legare R, Quddus MR, and Sung CJ
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- Humans, Female, Middle Aged, Adult, Aged, Genetic Predisposition to Disease, Nuclear Proteins genetics, Breast Neoplasms genetics, Breast Neoplasms pathology, Germ-Line Mutation, PTEN Phosphohydrolase genetics, Checkpoint Kinase 2 genetics, Immunohistochemistry, Ataxia Telangiectasia Mutated Proteins genetics, Fanconi Anemia Complementation Group N Protein genetics, Biomarkers, Tumor genetics, Biomarkers, Tumor analysis, Tumor Suppressor Proteins genetics
- Abstract
Deleterious germline mutations in multiple genes confer an increased breast cancer (BC) risk. Immunohistochemical (IHC) expression of protein products of mutated high-risk genes has not been investigated in BC. We hypothesized that pathogenic mutations may lead to an abnormal IHC expression pattern in the tumor cells. BCs with deleterious germline mutations in CHEK2, ATM, PALB2 & PTEN were identified. Immunohistochemistry was performed using Dako staining platform on formalin fixed paraffin embedded tumor tissue. Primary antibodies for PALB2 (ab202970), ATM [2C1(1A10)}, CHK2 (EPR4325), and PTEN (138G6) proteins were used for BCs with respective deleterious mutations. IHC expression was assessed in tumor and adjacent benign breast tissue. Total 27 BCs with 10 CHEK2, 9 ATM, 6 PALB2 & 2 PTEN deleterious germline mutations were identified. IHC staining was performed on 8 CHEK2, 7 ATM, 6 PALB2 & 2 PTEN cases. Abnormal CHEK2 IHC staining was identified in 7/8(88%) BCs. Three distinct CHK2 IHC patterns were noted: 1) Strong diffuse nuclear positivity (5 BC), 2) Null-pattern (2 BC), & 3) Normal breast-like staining in 1 BC Four of 5 (80%) strong CHK2 staining BC had missense CHEK2 mutations. Null-pattern was present with a missense & a frameshift mutation. Normal breast-like CHEK2 IHC staining pattern was present in 1 BC with CHEK2 frameshift mutation. Loss of nuclear/cytoplasmic PTEN IHC expression was noted in 2 in-situ carcinomas. Abnormal PTEN and CHK2 IHC were present in atypical ductal hyperplasia and flat epithelial atypia. ATM and PALB2 IHC expression patterns were similar in tumor cells and benign breast epithelium: mild to moderate intensity nuclear and cytoplasmic staining. We report abnormal CHEK2 IHC expression in 88% of BCs with pathogenic CHEK2 mutations. With PTEN and CHEK2 pathogenic mutations, abnormal IHC patterns are seen in early atypical proliferative lesions. IHC may be applied to identify CHEK2 & PTEN mutated BCs and precursor lesions., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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19. Developing climate-resilient rice varieties (BRRI dhan97 and BRRI dhan99) suitable for salt-stress environments in Bangladesh.
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Debsharma SK, Rahman MA, Khatun M, Disha RF, Jahan N, Quddus MR, Khatun H, Dipti SS, Ibrahim M, Iftekharuddaula KM, and Kabir MS
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- Bangladesh, Plant Breeding, Phenotype, Climate, Oryza genetics
- Abstract
Salinity variations are the main reason for rice yield fluctuations in salt-prone regions throughout the dry season (Boro season). Plant breeders must produce new rice varieties that are more productive, salt tolerant, and stable across a variety of settings to ensure Bangladesh's food sustainability. To assess the yield and stability, we used fifteen rice genotypes containing two tolerant checks BRRI dhan67, Binadhan-10 and the popular Boro rice variety BRRI dhan28 in different salinity "hotspot" in three successive years followed by additive main effects and multiplicative interaction (AMMI) model utilizing a randomized complete block (RCB) design with two replications. Parents selection was done based on estimated breeding values (EBVs). Eight parents with high EBVs (IR83484-3-B-7-1-1-1, IR87870-6-1-1-1-1-B, BR8992-B-18-2-26, HHZ5-DT20-DT2-DT1, HHZ12-SAL2-Y3-Y2, BR8980-B-1-3-5, BRRI dhan67, and Binadhan-10) might be used to develop new segregating breeding materials. Based on farmer preferences and grain acceptability, three genotypes (IR83484-3-B-7-1-1-1, HHZ5-DT20-DT2-DT1, and HHZ12-SAL2-Y3-Y2) were the winning and best ones. The above three genotypes in the proposed variety trial showed significantly higher yields than the respective check varieties, high salinity tolerance ability, and good grain quality parameters. Among them, HHZ5-DT20-DT2-DT1 and IR83484-3-B-7-1-1-1 harbored eight and four QTL/genes that regulate the valuable traits revealed through 20 SNP genotyping. Finally, two genotypes IR83484-3-B-7-1-1-1 and HHZ5-DT20-DT2-DT1 were released as high salinity-tolerant rice varieties BRRI dhan97 and BRRI dhan99, respectively in Bangladesh for commercial cultivation for sustaining food security and sustainability., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Debsharma et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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20. Low-level expression of human Epidermal growth Factor Receptor-2 (HER2) in High-Grade Mullerian Tumors: Implications for therapy decision making.
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Abada E, Singh K, Hansen K, and Quddus MR
- Abstract
Introduction: Reclassification of HER2-negative breast cancers to HER2 low-level expression allowed targeted anti-HER2 therapy in about 60% of patients, improving outcome. The high recurrence rates and often dismal outcomes with current therapies of high-grade Mullerian carcinomas, offers opportunity to explore anti-HER2 therapies in the gynecologic tract carcinomas. We investigated HER2 low expression as currently defined in breast carcinomas., Methods: We reviewed all high-grade Mullerian cancers between 2016 and 2021, where HER2 by IHC and/or FISH tests were available. Additional clinical information was recorded, and statistical analysis was performed using SPSS (version 27)., Results: Forty (49.4%) tumors were endometrial, 20 (24.7%) ovarian, 16 (19.8%) fallopian tubal, and 5 (6.2%) primarily peritoneal. Overall, 17 (21.0%) were HER2 positive (IHC 3+/IHC 2+/FISH amplified), 31 (38.3%) HER2 low (IHC 1+/2+/FISH non-amplified), and 30 (37.0%) were HER2 negative (IHC = 0). HER2 low expression was noted in 15% ovarian, 25% fallopian tubal, 53% endometrial, and 60% peritoneal tumors; 34% and 21% of serous carcinomas, 63% and 13% of carcinosarcomas, and 67% and 33% of endometrioid carcinomas were HER2 low and HER2 positive respectively. HER2 negative and HER2 low expression had a significant association with primary tumor location (p = 0.001); endometrium and peritoneal tumors were more likely to be HER2 low and HER2 negative. During a mean follow-up of 13.2 months (range: 1-34), 5% of the patients were deceased., Conclusions: Based on the current HER2-low recommendations in the breast, about one-third of patients with high-grade Mullerian carcinomas might qualify for anti-HER2 therapy with a potential for improved progression-free and overall survival., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Authors.)
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- 2023
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21. Diagnostic utility of PRAME immunohistochemistry in PEComa family of tumors and morphologic mimics with emphasis on the gynecologic tract.
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Smithgall MC, Liu-Jarin X, Chen X, Singh K, Quddus MR, and Cimic A
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Perivascular epithelioid cell tumors (PEComas), rare mesenchymal tumors with myomelanocytic differentiation, can be a diagnostic challenge, often requiring a panel of immunohistochemical markers. Preferentially expressed antigen in melanoma (PRAME) is a relatively new antigen with utility in diagnosing melanomas. This study aimed to survey PRAME expression patterns in the PEComa family of tumors and morphologic mimics. Twenty cases of PEComas and 27 non-PEComas (10 leiomyosarcomas, 3 smooth muscle tumors of uncertain malignant potential [STUMPs], 11 leiomyomas, 1 uterine inflammatory myofibroblastic tumor [IMT], and 2 low-grade endometrial stromal sarcomas [LGESSs]) were stained with PRAME and compared to previously performed HMB45 and Melan-A stains, when available. Tumors showing no or barely perceptible PRAME staining at 10× were considered negative. Tumors were considered positive if there was full nuclear staining evident at 10× in at least one 10× field. Diffuse staining was defined as positivity in at least 80% of tumor nuclei. Overall, PRAME was expressed in 70% of PEComas, with diffuse positivity in 60%. However, PRAME was not specific for PEComas, with immunopositivity in the majority (70%) of uterine leiomyosarcoma cases, though negative in STUMP, leiomyoma, IMT, and LGESS cases. PRAME sensitivity was 70% and specificity was 74%, while HMB45 was more sensitive (90%) and specific (100%), but only 15% of PEComas showed diffuse staining. Melan-A staining was less common than HMB45 or PRAME, with only 18.8% sensitivity but 100% specificity. Among gynecologic PEComas, PRAME was expressed in 75% overall and enriched among malignant cases (85.7% positive). As part of an immunohistochemical panel, PRAME could be useful in the workup of PEComa cases. In the future, PRAME-specific immunotherapies may be beneficial in treating patients with malignant PEComas., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2023
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22. Benign Biphasic Tumors of the Mullerian Tract - a Mimic of Phyllodes Tumor. A Clinical-Pathologic Description of 21 Cases.
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Wawire J, Sung CJ, and Quddus MR
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- Humans, Female, Stromal Cells, Phyllodes Tumor diagnosis, Adenosarcoma diagnosis, Adenofibroma, Breast Neoplasms
- Abstract
Objective: A review of the clinical-pathologic characteristics and outcomes of biphasic polyps occurring in the female genital tract, not meeting the diagnostic criteria of Mullerian Adenosarcoma (MA)., Methods: An archival database search was run, after IRB approval, between 2001 and 2019, using terminology such as "Mullerian adenofibroma," "atypical Mullerian adenofibroma," "polypoid adenofibroma," and "atypical polyp with increased stromal cellularity." Two pathologists (JW and MRQ) reviewed all the retrieved cases and documented the morphologic features with particular emphasis on the presence of any features of Mullerian adenosarcoma. Follow-up data were also abstracted., Results: Twenty-one cases, 12 cervical and 9 endometrial lesions, constituted the study cohort. Patients ranged from 26 to 64 years (median 49 years). On review, 20 of 21 of those cases showed Phyllodes-like architectural patterns. However, only one case showed all four features of MA, all of which were focal and inconspicuous. Follow-up (median duration of 5 years) did not document any recurrences in any of the 21 cases after excision., Conclusion: This series adds to the growing body of literature affirming the existence of benign biphasic Mullerian polyps encountered in the endometrium and cervix that fall short of the Mullerian adenosarcoma diagnosis., (© 2023 by the Association of Clinical Scientists, Inc.)
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- 2023
23. Simultaneous p53 and KRAS mutation in a high-grade serous carcinoma with deceptive appearance of a low-grade carcinoma. A case report.
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Marketkar S, Sung CJ, and Quddus MR
- Abstract
Low-grade and high-grade serous carcinomas have unique clinical, morphological, underlying molecular alterations, and vastly different biologic behavior (Prat et al., 2018, Vang et al., 2009). The differentiation into high and low-grade serous carcinoma is important for clinical management and prognosis and is easily recognized by practicing pathologists. High-grade serous carcinoma is characterized by marked nuclear atypia and pleomorphism, frequent, often atypical mitosis with papillary or three-dimensional clusters, p53 mutation, and block-like p16 staining. In contrast, low-grade serous carcinomas have a different morphologic appearance with micropapillary formation, small nests of tumor cells having low to intermediate grade nuclei, and absence of significant mitosis. Low-grade serous carcinoma is often associated with micropapillary variant of ovarian serous borderline tumor. The low-grade serous carcinoma shows wild type p53 expression, patchy p16 staining, and often K-RAS , N-RAS , and/or B-RAF mutation. Here we report a case of mullerian high grade serous with a deceptive morphology resembling low-grade serous carcinoma with micropapillary features and moderate nuclear atypia. However, the tumor is simultaneously p53 and K-RAS mutated. This case illustrates three critical issues; a) potential to be mistaken as a low-grade serous carcinoma because of morphologic appearance and relative uniform cytologic feature. b). raise the question of true progression of low-grade to high-grade serous carcinoma, a rare phenomenon as described in the literature, and c). whether the biologic behavior and/or response to therapy would differ from the classic forms., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Authors.)
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- 2023
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24. Evaluation of Saccharomyces cerevisiae -like 1 (SEC14L1) in Gynecologic Malignancies Shows Overexpression in Endometrial Serous Carcinoma.
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Banet N, Masnick M, and Quddus MR
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- Female, Humans, Saccharomyces cerevisiae metabolism, Carrier Proteins, Phospholipid Transfer Proteins, Genital Neoplasms, Female, Carcinoma, Endometrioid pathology, Endometrial Neoplasms pathology, Uterine Neoplasms pathology, Cystadenocarcinoma, Serous pathology, Carcinosarcoma pathology, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Saccharomyces cerevisiae -like 1 ( SEC14L1 ) is a member of the SEC14 family and is involved in liposoluble vitamin transfer, and in a large cohort of breast cancer cases, was one of the genes most significantly associated with lymphovascular invasion (LVI), and had a significant relationship with human epidermal growth factor receptor 2 status, survival, and histologic grade. In this study, 111 separate gynecologic tumors were studied for SEC14L1 protein expression, including: uterine adenosarcoma, ovarian clear cell carcinoma, endometrial stromal sarcoma, endometrioid carcinoma of the uterus, high-grade serous carcinoma, ovarian endometrioid carcinoma, uterine leiomyosarcoma, low-grade serous carcinoma, uterine carcinosarcoma, and uterine serous carcinoma (USC). Overall, LVI was noted in 31/111 (28%) cases, highest in uterine carcinosarcoma (5/11; 45%), high-grade serous carcinoma (9/21; 43%), and ovarian clear cell carcinoma (4/10; 40%). SEC14L1 was positive in 25/111 (23%) cases; the highest percentage and only statistically significant finding by tumor type was USC at 9/12 (75%) cases positive. No relation between LVI or survival and SEC14L1 expression was noted. The relation between USC, a tumor known to show human epidermal growth factor receptor 2 overexpression and SEC14L1 is a novel finding, the significance of which warrants further study., Competing Interests: The authors declare no conflict of interest., (Copyright © 2022 by the International Society of Gynecological Pathologists.)
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- 2023
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25. Variants of in situ carcinoma of the endometrium: Clear cell and gastrointestinal types, with a review of the literature.
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Abada E, Banet N, and Quddus MR
- Abstract
Two precursor lesions are commonly associated with endometrial carcinoma. Atypical endometrial hyperplasia/endometrial intraepithelial neoplasia is a known precursor lesion of endometrial endometrioid carcinoma, while endometrial intraepithelial carcinoma, is a recognized precursor lesion of endometrial high-grade serous carcinoma. Other than these two recognized entities, other rare precursor lesions for endometrial carcinoma do exist, although reported cases are relatively few and not universally recognized. This therefore poses diagnostic challenges in clinical practice. Here, we describe a series of rare precursor lesions of the endometrium identified at our institution, including clear cell and gastrointestinal variants, their morphologic and immunohistochemical characteristics, and review current literature regarding these variants. The information provided may guide the proper diagnosis and ultimately lead to effective clinical management in every-day practice., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2022 Published by Elsevier Inc.)
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- 2022
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26. Benign stratified intraepithelial mucinous proliferation of the uterine cervix: Significance of a previously unreported potential mimic of SMILE.
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Arslanian E, Singh K, Hansen K, and Quddus MR
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- Cell Proliferation, Cervix Uteri pathology, Female, Humans, Mucins, Retrospective Studies, Uterine Cervical Neoplasms pathology, Uterine Cervical Dysplasia pathology
- Abstract
Stratified mucin-producing intraepithelial lesion (SMILE) is a histologic subtype of HPV-associated endocervical adenocarcinoma in situ. We have observed benign endocervical changes resembling SMILE. We aim to characterize this pattern and explore its potential association with dysplasia. We retrospectively retrieved all 296 consecutive cases accessioned as endocervical biopsies. Some included multiple specimens, totaling 483 biopsies and 219 endocervical curettages (ECC), n = 702. We included cases showing endocervical epithelial stratification often with pencillate (triangular-shaped) nuclei. We rejected cases in which layering represented tangential sectioning, metaplasia, microglandular hyperplasia, gastric type epithelial changes, and dysplasia. We found benign stratified intraepithelial mucinous proliferation in 51 patients, either with a multilayered (n = 27) or a two-layered appearance (n = 24). Overall, multilayered proliferation occurred in 6 % (29/483) of biopsies and in 0.9 % of ECCs (2/219). Two-layering was identified in 4 % of all biopsies (20/482) and was not seen in ECCs. Histologic findings included stratification, intracytoplasmic mucin, paler cytoplasm, low nuclear-to-cytoplasmic ratio, often pencillate nuclei, rare mitoses, and no apoptotic bodies. P16 immunohistochemistry (n = 12) was negative, suggesting absence of underlying high-risk HPV infection. HSIL was concomitant in 29.6 % (8/27) of patients with multilayered proliferation. Concurrent SMILE was not observed. We also reviewed 13 SMILE cases. Concurrent multilayered benign proliferation was identified in 54 % (7/13) of cases. We describe benign stratified intraepithelial mucinous proliferation of the cervix, which morphologically may overlap with SMILE. Its presence in most SMILE cases suggests a potential relationship. The multilayered form represents a diagnostic pitfall when mitotically active. Because of the often-coexistent HSIL, we propose that its presence should prompt scrutiny to rule out any associated dysplasia., Competing Interests: Declaration of competing interest None., (Copyright © 2022 Elsevier Inc. All rights reserved.)
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- 2022
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27. Somatic mutation analysis of Mesonephric-Like adenocarcinoma and associated putative precursor Lesions: Insight into pathogenesis and potential molecular treatment targets.
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Arslanian E, Singh K, James Sung C, and Quddus MR
- Abstract
Aims: Mesonephric-like adenocarcinoma (MLA) is a recently described histologic tumor subtype of the Müllerian tract. MLA can arise in association with Müllerian lesions that share common mutations. We report three MLAs and hypothesize that concurrent endometriosis and cystadenofibroma with focal borderline changes might also carry common mutations., Methods and Results: We searched "mesonephric" in our database from 2015 to mid-2021 to retrieve MLA cases. Somatic mutation analysis was performed on tumors and on associated benign proliferative lesions. All MLAs (2 ovarian and 1 uterine) harbored KRAS G12D or G12 V mutations. A PIK3CA alteration (H1047Q) was detected in one MLA and in the associated cystadenofibroma with focal borderline changes. The molecular profile of MLA-associated Müllerian lesions (endometriosis and seromucinous cystadenofibroma with focal borderline changes) was similar to concurrent adenocarcinoma. However, tumor contamination could not be excluded in the endometriotic lesion. Patients presented at various stages, with no evidence of post-operative recurrence after 15 months (FIGO IC) and 33 months (FIGO IIA2). One patient (FIGO IIIA1) died of disease 32 months after surgery., Conclusions: KRAS mutations commonly characterize MLA. At least some MLA-associated Müllerian lesions show MLA-like genetic profiles, suggesting a precursor role. As far as we are aware, we describe for the first time in MLA the potentially actionable H1047Q variant of PIK3CA ., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2022 Published by Elsevier Inc.)
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- 2022
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28. Comparison of Cervical HSIL Outcome between Pregnant and Non-Pregnant Women.
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Pongsuvareeyakul T, Eaton S, Quddus MR, Sung CJ, and Singh K
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- Female, Humans, Inflammation, Papanicolaou Test, Pregnancy, Carcinoma, Squamous Cell pathology, Squamous Intraepithelial Lesions, Uterine Cervical Neoplasms pathology, Uterine Cervical Dysplasia diagnosis
- Abstract
Objective: Variables predicting outcome of high-grade squamous intraepithelial lesion (HSIL) in pregnancy are unknown. The HSIL is usually managed conservatively during pregnancy. We aim to assess morphological features of HSIL diagnosed during pregnancy and identify variables predicting HSIL outcome in pregnant and non-pregnant women., Methods: ThinPrep pap smears with HSIL in pregnant (2014-2019) and non-pregnant females (2017-2019) were identified. The pathology material from follow-up cervical samples was reviewed by two participating pathologists (TP and KS). Regression was defined as benign or residual low-grade squamous intraepithelial lesion. Histological findings were recorded and compared between pregnant and non-pregnant cohort., Results: The HSIL regression rate was higher in colposcopic samples (16% vs. 0%; p =0.05) and follow up excisions (27% vs. 23%) from pregnant cohort. Overall regression rate was higher in pregnant versus non-pregnant cohort (34% vs. 23%; p =0.1). The stromal inflammation was prominent in biopsies from pregnant cohort ( p =0.02). Presence of CIN 2 (versus CIN 3) in non-pregnant cohort predicted HSIL regression ( p =0.04). The time to biopsy and excision (from pap smear) was significantly higher in pregnant cohort ( p =0.0001). HSIL histological features (nuclear pleomorphism, hyperchromasia, nuclear contour irregularity, nuclear to cytoplasmic ratio, and mitosis) and HPV types were similar in both cohorts and did not predict regression., Conclusion: The higher rate of benign findings during HSIL follow up in pregnancy is likely related to duration and stromal inflammation. HSIL regression is frequently noted following CIN2 diagnosis in non-pregnant setting. HSIL histology is similar in postpartum and non-pregnant females., (© 2022 by the Association of Clinical Scientists, Inc.)
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- 2022
29. A Snapshot of the Landscape of Endocervical Adenocarcinoma in Kenya: What Has HPV Got to Do with It?
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Wawire J, Njenga P, Moloo Z, Sung CJ, and Quddus MR
- Subjects
- Adult, Aged, Cross-Sectional Studies, Female, Formaldehyde, Humans, Kenya epidemiology, Middle Aged, Papillomaviridae genetics, Young Adult, Adenocarcinoma metabolism, Papillomavirus Infections diagnosis, Papillomavirus Infections epidemiology, Uterine Cervical Neoplasms diagnosis, Uterine Cervical Neoplasms epidemiology, Uterine Cervical Neoplasms pathology
- Abstract
Objective: To determine the frequency of the HPV associated endocervical adenocarcinomas diagnosed at a tertiary referral laboratory in Kenya over a one-year period and classify them by histologic subtypes according to the proposed criteria by IECC., Materials and Methods: This was a collaborative cross-sectional descriptive study. Formalin-fixed parrafin embedded tissue blocks of 29 confirmed cases of endocervical adenocarcinoma diagnosed at AKUHN between July 2017 and July 2018 were analyzed for presence of 14 hrHPV subtypes including types 16 and 18 using GenomeMETM's GeneNavTm HPV One qPCR kit. Variables analyzed included age, histologic subtype and presence or absence of hrHPV., Results: Twenty-nine cases were analyzed (median age=48years, range 23-70 years), of which 27(93.1%) were positive for hrHPV, with type 16 alone positive in 11(40.7%) cases and present alone or in combination with others including type 18 in 21(72.4%) cases. All hrHPV positive cases had either type 16 or 18. Twenty cases (69.0%) were classified as usual type adenocarcinoma, all positive for hrHPV. Other HPV associated adenocarcinomas identified were mucinous, signet ring cell type (4), villoglandular (2) and mucinous, NOS (1). There were only two cases of non-HPV associated adenocarcinoma., Conclusion: In this series, we show that the proportion of HPV associated endocervical adenocarcinoma in Kenya is high and is particularly driven by types 16 and 18. Policy makers, hospitals and laboratories in East Africa should make an effort to avail the various techniques of detecting hrHPV critical in screening and diagnosis of endocervical adenocarcinoma., (© 2022 by the Association of Clinical Scientists, Inc.)
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- 2022
30. Tumoral Morphologic Features From Cervical Biopsies That Are Predictive of a Negligible Risk for Nodal Metastasis and Tumor Recurrence in Usual-type Cervical Adenocarcinomas: A Multi-institutional Study.
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Wang Y, Chang RJ, Luo RZ, Yu J, Zhang X, Yang X, Quddus MR, Li L, Yang W, Liu A, Jiang Q, Zhao R, Zhu H, Zhou F, Wang Y, Sheng X, Liu LL, Wen YL, Banet N, Sung CJ, Qi Y, Bi R, Li M, Wang Y, Li J, Lin W, Wang Y, Rivera G, Chen H, Holloway SB, Fadare O, Liu J, Wang J, Lea J, Kong B, and Zheng W
- Subjects
- Biopsy, Female, Humans, Neoplasm Recurrence, Local pathology, Papillomaviridae, Adenocarcinoma pathology, Carcinoma, Uterine Cervical Neoplasms pathology
- Abstract
The metastatic or recurrent potential of localized human papillomavirus-associated endocervical adenocarcinoma (HPVA EAC) is difficult to predict, especially based upon biopsy alone. Recent analyses of small cohorts indicate that high tumor nuclear grade (TNG) and the presence of necrotic tumor debris (NTD) from HPVA EACs in cervical biopsy specimens are highly predictive of nodal metastasis (NM). In the present study, we aimed to investigate how reliably tumoral morphologic features from cervical biopsy specimens predict NM or tumor recurrence (TR) and patient outcomes in a large cohort of endocervical adenocarcinoma patients. A cohort comprised of 397 patients with HPVA EAC treated at 18 institutions was identified, and cervical biopsies were paired with their associated complete tumor resections for a total of 794 specimens. A variety of tumoral histologic features were examined for each paired specimen, including TNG (assessed on a 3-tiered scale of increasing abnormalities-TNG1, TNG2, TNG3) and NTD (defined by the presence of necrotic and apoptotic tumor cells within tumor glandular lumens admixed with granular and eosinophilic amorphous material and inflammatory cells), which were correlated with outcomes. The distribution of TNG in biopsies was as follows: 86 (21.7%) TNG1, 223 (56.2%) TNG2, and 88 (22.2%) TNG3. NTD was identified in 176 (44%) of the biopsy specimens. The sensitivity, specificity, positive predictive value, and negative predictive value of a TNG1 assignment in the biopsy being predictive of the same assignment in the full resection were 0.82 (95% confidence interval [CI]: 0.7-0.9), 0.895 (0.86-0.93), 0.593 (0.48-0.696), and 0.96 (0.94-0.98), respectively. Respective values for an NTD-negative status were 0.89 (95% CI: 0.83-0.92), 0.715 (0.64-0.77), 0.72 (0.65-0.77), and 0.89 (0.83-0.93), respectively. Compared with the other cases in each category, both TNG1 and an NTD-negative status were each significantly associated with lower rates of NM (odds ratio for TNG1=0.245, 95% CI: 0.070-0.857, P=0.0277; for NTD=0.199, 95% CI: 0.094-0.421, P<0.0001) and TR (odds ratio for TNG1=0.225, 95% CI: 0.051-0.987, P=0.0479; for NTD=0.367, 95% CI: 0.171-0.786, P=0.0099) independent of depth of stromal invasion, lymphovascular invasion, tumor size, FIGO stage, and Silva pattern. Overall, 73/379 (19%) cases were both TNG1 and NTD-negative on the biopsy, and none of these 73 cases showed NM (0%), but a single case (1.4%) showed TR. In contrast, among the 324 biopsies with TNG2/3 and/or presence of NTD, 62 (19.1%) had NM, and 41 (12.9%) had TR. In summary, 2 variables in combination (ie, TNG1 and NTD-negative) identified a subset of HPVA EAC patients-∼19%-with a 0% frequency of nodal metastases and only 1.4% frequency of recurrence. Biopsies highly but imperfectly predicted these features. Nonetheless, these findings may potentially be of clinical utility in the risk stratification of patients with HPVA EACs. This may allow some patients with a minimal risk of nodal metastases and TR to be identified at the biopsy phase, thereby facilitating more personalized, possibly less aggressive treatment., Competing Interests: Conflicts of Interest and Source of Funding: Partially supported by Mark and Jane Gibson Endowment fund to W.Z., an Intramural Research Grant awarded to G.R., the start-up fund of Department of Pathology, University of Texas Southwestern Medical Center to G.R. and H.C. The research project was also partially supported by Natural Science Grant of China 2016YFC 0902903 2016 to B.K. (as Co-PI in the grant) and Cervical Cancer Research Award 2020KJHM0020 to Yue. W. The authors have disclosed that they have no significant relationships with, or financial interest in, any commercial companies pertaining to this article., (Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2022
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31. Adenomatoid Tumor of Fallopian Tube With "Deciduoid" Morphology and Atypical Nuclear Features.
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Pongsuvareeyakul T, Quddus MR, and Singh K
- Subjects
- Adult, Biomarkers, Tumor, Fallopian Tubes pathology, Female, Humans, Adenomatoid Tumor diagnosis, Adenomatoid Tumor pathology, Fallopian Tube Neoplasms diagnosis, Fallopian Tube Neoplasms pathology, Genital Neoplasms, Female pathology
- Abstract
Adenomatoid tumor is a benign neoplasm of mesothelial origin. Adenomatoid tumor in female genital tract shows typical morphologic features with bland nuclei. Deciduoid morphology has not been reported in adenomatoid tumor. Tumors with deciduoid cells and atypical nuclear features may pose a diagnostic challenge and raise the suspicion of malignancy. We present a case of fallopian tube adenomatoid tumor with deciduoid morphology and atypical nuclear features in a 39-year-old woman with prolonged progestin therapy. We hypothesize that the unusual morphological changes in adenomatoid tumor, like deciduoid morphology and nuclear atypia, may be secondary to hormone effects., Competing Interests: The authors declare no conflict of interest., (Copyright © 2021 by the International Society of Gynecological Pathologists.)
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- 2022
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32. SNP Based Trait Characterization Detects Genetically Important and Stable Multiple Stress Tolerance Rice Genotypes in Salt-Stress Environments.
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Debsharma SK, Rahman MA, Quddus MR, Khatun H, Disha RF, Roy PR, Ahmed S, El-Sharnouby M, Iftekharuddaula KM, Aloufi S, Alzuaibr FM, Alqurashi M, Sakran MI, and Kabir MS
- Abstract
Soil salinity is a major constraint to rice production in coastal areas around the globe, and modern high-yielding rice cultivars are more sensitive to high salt stress, which limits rice productivity. Traditional breeding programs find it challenging to develop stable salt-tolerant rice cultivars with other stress-tolerant for the saline environment in Bangladesh due to large yield variations caused by excessive salinity fluctuations during the dry ( boro ) season. We examined trait characterization of 18 advanced breeding lines using SNP genotyping and among them, we found line G6 (BR9621-B-1-2-11) (single breeding line with multiple-stress-tolerant QTL/genes) possessed 9 useful QTLs/genes, and two lines (G4:BR9620-2-7-1-1 and G14: IR 103854-8-3-AJY1) carried 7 QTLs/genes that control the desirable traits. To evaluate yield efficiency and stability of 18 rice breeding lines, two years of field experiment data were analyzed using AMMI (additive main effect and multiplicative interaction) and GGE (Genotype, Genotype Environment) biplot analysis. The AMMI analysis of variance demonstrated significant genotype, environment, and their interaction, accounting for 14.48%, 62.38%, and 19.70% of the total variation, respectively, and revealed that among the genotypes G1, G13, G14, G17, and G18 were shown to some extent promising. Genotype G13 (IR 104002-CMU 28-CMU 1-CMU 3) was the most stable yield based on the AMMI stability value. The GGE biplot analysis indicates 76% of the total variation (PC1 48.5% and PC2 27.5%) which is performed for revealing genotype × environment interactions. In the GGE biplot analysis, genotypes were checked thoroughly in two mega-environments (ME). Genotype G14 (IR103854-8-3-AJY1) was the winning genotype in ME I, whereas G1 (BR9627-1-3-1-10) in ME II. Because of the salinity and stability factors, as well as the highest averages of grain yield, the GGE and AMMI biplot model can explain that G1 and G13 are the best genotypes. These (G1, G6, G13, G14, G17, and G18) improved multiple-stress-tolerant breeding lines with stable grain yield could be included in the variety release system in Bangladesh and be used as elite donor parents for the future breeding program as well as for commercial purposes with sustainable production.
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- 2022
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33. Primary Fallopian Tube Mullerian Adenosarcoma With Sarcomatous Overgrowth and a Previously Unreported MEIS1-NCOA2 Gene Fusion.
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Ribeiro E Ribeiro R, Lewin ER, Hart JL, Quddus MR, and Hansen K
- Subjects
- Fallopian Tubes, Female, Gene Fusion, Humans, Nuclear Receptor Coactivator 2 genetics, Adenosarcoma diagnosis, Adenosarcoma genetics, Fallopian Tube Neoplasms genetics, Peritoneal Neoplasms, Uterine Neoplasms
- Abstract
Extrauterine Mullerian adenosarcomas (MA) are rare and often associated with endometriosis. We report a 55-yr-old patient seen in consultation for abdominal pain and bloating. Imaging was suggestive of a left adnexal mass and "peritoneal carcinomatosis". Pathological examination of the specimen revealed a MA arising in the left fallopian tube, with sarcomatous overgrowth, diffuse peritoneal involvement and omental "caking". Next-generation sequencing identified a MEIS1-NCOA2 gene fusion, previously unreported in MA., Competing Interests: The authors declare no conflict of interest., (Copyright © 2021 by the International Society of Gynecological Pathologists.)
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- 2022
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34. Genetic diversity of Lathyrus sp collected from different geographical regions.
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Rahman MM, Quddus MR, Ali MO, Liu R, Li M, Yan X, Li G, Ji Y, Hossain MM, Wang C, Sarker A, Yang T, and Zong X
- Subjects
- Algorithms, Genetic Markers, Genetics, Population, Genotype, Microsatellite Repeats, Models, Genetic, Genetic Variation, Lathyrus classification, Lathyrus genetics, Phylogeny, Phylogeography
- Abstract
Background: The demand for grass peas (Lathyrus sativus L.) had increased as high nutritional safe food, but most of the accessions of South Asia and Africa had low grain harvest. Therefore, this study had been undertaken to collect grass pea germplasm for boosting yields and quality improvement., Methods and Results: In this study, 400 accessions of grass pea from different geographical regions had characterized by using 56 Simple Sequences Repeat (SSRs) markers. In total 253 alleles were detected, the maximum and minimum polymorphic information content (PIC) indices were 0.70 and 0.34 found in markers G17922 and G18078, correspondingly. The germplasm was split into two main and one sub-group by cluster assay, by SSR assay, and three populations by model-based population structure analysis (Pop1, Pop2 and admixed). Neighbors joining tree assay showed the tested germplasm highly diverse in structure. Three-dimensional principal components analysis (PCA) and two dimensional principles coordinate analysis (PCoA) exhibited two main and one admixed group (P1, P2 and P1P2). In addition, FST population value of pairwise mean and analysis of molecular variance (AMOVA) showed high population structure across all pairs of populations on an average 0.1710 advocating all population structure categories varied significantly. The average predictable heterozygosity distant was 0.4472-0.4542 in same cluster for the individuals., Conclusion: Discovery from this study revealed SSR markers based polymorphic bands showed in the diversified grasspea germplasm which might be utilized as genetic resource of a breeding scheme and prospective uses for mapping analyses of recombinant inbred lines (RIL)., (© 2021. The Author(s), under exclusive licence to Springer Nature B.V.)
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- 2022
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35. Androgen-induced Hyperplastic Prostatic Glands in the Uterine Cervix.
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Quddus MR, Ribeiro E Ribeiro R, and Singh K
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- Humans, Male, Androgens adverse effects, Cervix Uteri pathology, Hyperplasia pathology, Prostate, Transgender Persons, Female, Prostatic Neoplasms pathology, Uterine Cervical Neoplasms pathology
- Abstract
Competing Interests: The authors declare no conflict of interest.
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- 2022
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36. Metaplastic Potential of Müllerian Epithelia in Full Display!
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Ribeiro E Ribeiro R, Sung CJ, and Quddus MR
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- Female, Humans, Middle Aged, Carcinoma, Ovarian Epithelial pathology, Cystadenoma pathology, Epithelium pathology, Ovarian Neoplasms pathology
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- 2021
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37. "Corkscrew"-Associated Gastritis: A Form of Zoonosis!
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Islam KMS, Sung CJ, and Quddus MR
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- Animals, Bacterial Zoonoses microbiology, Bacterial Zoonoses pathology, DNA, Bacterial isolation & purification, Gastric Mucosa pathology, Gastritis microbiology, Gastritis pathology, Helicobacter heilmannii genetics, Humans, Polymerase Chain Reaction, RNA, Ribosomal, 16S genetics, Bacterial Zoonoses diagnosis, Gastric Mucosa microbiology, Gastritis diagnosis, Helicobacter heilmannii isolation & purification
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- 2021
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38. Epithelium Involving Bilateral Axillary Lymph Nodes: Metastasis, Misplaced, or Mullerian!
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Singh K, Sardana R, Quddus MR, and Harigopal M
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- Aged, Axilla, Breast Neoplasms pathology, Carcinoma, Ductal, Breast pathology, Choristoma pathology, Diagnosis, Differential, Epithelium pathology, Female, Frozen Sections, Humans, Lymphatic Metastasis diagnosis, Lymphatic Metastasis pathology, Neoplasm Staging, Sentinel Lymph Node Biopsy, Breast Neoplasms diagnosis, Carcinoma, Ductal, Breast diagnosis, Choristoma diagnosis, Lymph Nodes pathology, Mullerian Ducts
- Abstract
During breast cancer staging, histological evaluation of axillary sentinel lymph nodes (SLN) is usually straightforward. However, the exact characterization of a small epithelial deposit in an SLN can be challenging, especially during the frozen section examination. We report the first case of endosalpingiosis involving bilateral axillary lymph nodes. We review published literature on axillary endosalpingiosis and discuss the differential diagnosis of small epithelial deposits in an axillary SLN. Pathologists should consider benign epithelial rests and displaced epithelium as differential diagnoses for the microscopic epithelial nodal deposit, especially during the frozen section examination.
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- 2021
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39. Low-grade serous carcinoma with extensive osseous metaplasia arising from ovarian serous cystadenofibroma.
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Ribeiro E Ribeiro R, Valenzuela A, Beffa L, Sung CJ, and Quddus MR
- Abstract
•Bilateral ovarian low-grade serous carcinoma presenting with extensive osseous metaplasia.•Both lesions arising directly from ovarian cystadenofibromas, skipping the "borderline phase".•No micropapillary serous borderline component was identified.•This case may represent a "skipped step" in low-grade serous carcinogenesis., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2021 The Author(s).)
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- 2021
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40. Descriptive study comparing outcomes of classic and nonclassic lobular carcinoma in situ (florid and pleomorphic) initially diagnosed on core needle biopsy.
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Singh K, Sung CJ, and Quddus MR
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- Biopsy, Large-Core Needle, Female, Humans, Neoplasm Recurrence, Local, Breast Carcinoma In Situ surgery, Breast Neoplasms, Carcinoma in Situ surgery, Carcinoma, Lobular
- Abstract
The lobular carcinoma in situ (LCIS) subtypes include classic (CLCIS), pleomorphic (PLCIS), and florid LCIS (FLCIS). The CLCIS is considered a breast cancer risk factor, but clinical significance and natural history of other LCIS subtypes are unclear. The outcome data on PLCIS and FLCIS is limited. The aim of current study is to compare excision and follow-up findings of CLCIS and nonclassic LCIS (NCLCIS). The breast needle biopsies (NBs) with LCIS during 01/2007-12/2017 were identified. The imaging, clinical findings, and outcome were compared between CLCIS and NCLCIS. A total of 36 NBs from 32 patients with NCLCIS (14 PLCIS & 22 FLCIS) and 73 NBs from 68 patients with CLCIS were identified. The NCLCIS patients were older (57 vs 52 years; P = .02) and presented more often with calcifications (78% vs 44%; P = .01). Seven (19%) PLCIS were initially diagnosed as ductal carcinoma in situ (DCIS). The microscopic invasion was frequent with NCLCIS (25%). No invasion was identified in NBs with CLCIS. A separate concurrent NBs with a carcinoma (29% vs 6%; P = .018) or ductal atypia (12% vs 3%; P = .1) was more frequent with CLCIS. The upgrade rate (invasion or DCIS) was higher with NCLCIS (25% vs 4%). Four NCLCIS developed ipsilateral recurrences: 2 NCLCIS, 1 IDC, and 1 ILC (50; 10-96 months). No breast event was reported in 24 pure CLCIS (60; 8-144 months). Invasive carcinoma with NCLCIS, unlike CLCIS, is always lobular type. Recurrences following NCLCIS are ipsilateral lobular tumors. NCLCIS subtypes are nonobligate precursors to invasive lobular carcinoma., (© 2020 Wiley Periodicals LLC.)
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- 2020
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41. COL1A1-PDGFB fusion uterine sarcoma and its response to Imatinib therapy.
- Author
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Grindstaff SL, DiSilvestro P, and Quddus MR
- Abstract
Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
- Published
- 2020
- Full Text
- View/download PDF
42. Comparison of PAX8 Expression in Breast Carcinoma Using MRQ50 and BC12 Monoclonal Antibodies.
- Author
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Singh K, Hanley LC, Sung CJ, and Quddus MR
- Subjects
- Biomarkers, Tumor metabolism, Breast Neoplasms diagnosis, Breast Neoplasms pathology, Cell Nucleus metabolism, Cross Reactions, Female, Humans, Immunohistochemistry, Receptor, ErbB-2 metabolism, Receptors, Estrogen metabolism, Receptors, Progesterone metabolism, Antibodies, Monoclonal immunology, Breast Neoplasms immunology, Breast Neoplasms metabolism, PAX8 Transcription Factor metabolism
- Abstract
PAX8 is a specific marker for kidney, ovarian, and thyroid tissue. Antibody-dependent cross-reactivity for PAX8 has been reported in mesothelial, pancreatic, and B-cell proliferations. We recently described antibody clone-dependent aberrant PAX8 expression in breast cancer. In this study we systematically analyze PAX8 expression in breast cancer on whole tissue sections, using MRQ50 and BC12 PAX8 monoclonal antibodies. Immunohistochemistry was performed on formalin-fixed paraffin-embedded whole tissue sections from 85 invasive mammary carcinomas. Immunostaining was evaluated at ×10 objective; extent (intervals of 10%, 0% to 100%) and intensity (weak, moderate, and strong) of nuclear staining was evaluated in the tumor, benign breast tissue, and lymphocytes. With MRQ50 variable PAX8 nuclear positivity was identified in tumor cells in 35/85 (41%) cases. Of 35 PAX8 cases, 23 (66%) showed only weak expression in 1% to 10% cells, 8 (23%) were weakly (5/8) or moderately (3/8) PAX8 in 11% to 50% cells, and 4 (11%) showed weak PAX8 positivity in >50% tumor cells. All 3 (3.5%) cases that showed moderate nuclear PAX8 staining with MRQ50 were histologic grade 3. No PAX8 expression was noted in benign lobules/ducts with either antibody. Breast carcinomas can show nuclear immunostaining with MRQ50 PAX8 antibody with up to 3.5% cases showing moderately intense expression. The BC12 PAX8 antibody does not cross-react with breast carcinoma and lymphocytes. During workup of metastatic carcinoma, weak to moderate PAX8 nuclear expression with MRQ50 clone should be interpreted with caution.
- Published
- 2020
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43. Clear Cell Endometrial Carcinoma In Situ (CCEIC) Exists!
- Author
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Islam KMS, Lawrence WD, and Quddus MR
- Subjects
- Adult, Female, Humans, Middle Aged, Adenocarcinoma, Clear Cell pathology, Carcinoma in Situ pathology, Endometrial Neoplasms pathology
- Published
- 2020
- Full Text
- View/download PDF
44. Aberrant Immunostaining of Breast Carcinoma by MRQ-50 PAX8 Antibody.
- Author
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Singh K, Hansen K, and Quddus MR
- Subjects
- Immunoassay, PAX8 Transcription Factor, Antibodies
- Published
- 2020
- Full Text
- View/download PDF
45. Human epidermal growth factor receptor 2 (Her2) testing for uterine serous carcinoma: Report of scenarios of unusual overexpression.
- Author
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Quddus MR, Hansen K, Tantravahi U, and Sung CJ
- Abstract
The human epidermal growth factor receptor 2 (Her2) is tested in many human cancers, including breast, bladder, pancreatic, ovarian and stomach. The American Society of Clinical Oncology (ASCO)/College of American Pathologists (CAP) have issued Clinical Practice Guidelines for reporting Her2 results for breast carcinomas (Wolf et al., 2018). For the last 1-2 years Her2/neu is tested in endometrial serous carcinoma, especially in recurrent tumors or non-responsive tumors as an option for additional treatment. College of American Pathologists (CAP) offers a template for prognostic marker reporting results for specimens with endometrial carcinomas (Fitzgibbons et al., 2019). Her2/neu testing by immunohistochemistry (IHC) mandates rigorous fixation time control, e.g., fixation time should fall within 6-72 h (Recommendations for Her2 Testing in Breast Cancer, 2013). For that reason, in breast cancers, Her2/neu testing is done on initial core biopsy specimens. The test is however, repeated on excision specimen in high grade tumors where Her2/neu expression was initially negative on core biopsies. For endometrial serous carcinoma no guidelines have been set or proposed as of yet. The Gynecologic Oncologists request this test because of proven benefit of adding Trastuzumab (Fader et al., 2018) and that is why it is important to documenting the findings in this report in the literature so that an informed request can be made by the treating oncologist when multiple tissue samples from the same patient are available for testing. Similarly pathologists also can decide which would be the best sample to test when no instruction is received. We report here three separate scenarios of uterine serous carcinomas in which the Her2/neu expressions were unique enough to justify documentation and therefore have implications for determining which specimen is ideal for the Her2 overexpression testing and likely to have highest possibility in identifying the Her2/neu overexpressed clone in the tumor which would expand the therapeutic options for the patients., Competing Interests: The authors declared that there is no conflict of interest., (© 2020 The Author(s).)
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- 2020
- Full Text
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46. COL1A1-PDGFB fusion uterine fibrosarcoma: A case report with treatment implication.
- Author
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Grindstaff SL, DiSilvestro J, Hansen K, DiSilvestro P, Sung CJ, and Quddus MR
- Abstract
COL1A1-PDGFB gene fusion associated uterine sarcoma, so called dermatofibrosarcoma-like tumor, a recently reported entity in the uterine corpus, morphologically appears as high grade sarcoma with some features of dermatofibrosarcoma. So far only one other case has been reported in the uterine corpus and two in the uterine cervix. Identification of this gene fusion allows greater choice of targeted therapy in these patients. All the reported cases in the mullerian system are found to be CD34 positive by immunohistochemistry, a commonly used antibody in most immunohistochemistry laboratories. We would, therefore, propose routine CD34 immunohistochemical staining in all high grade uterine sarcomas which have failed other common immunohistochemical markers., Competing Interests: The authors declared that there is no conflict of interest.
- Published
- 2019
- Full Text
- View/download PDF
47. Clear Cell Lesions of the Mullerian System: Not Always That "Clear"!
- Author
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Wawire J, Lawrence WD, and Quddus MR
- Subjects
- Abortion, Spontaneous pathology, Adenocarcinoma, Clear Cell pathology, Adenocarcinoma, Clear Cell surgery, Adult, Aged, 80 and over, Aspartic Acid Endopeptidases analysis, Biomarkers, Tumor analysis, Carcinoma, Endometrioid pathology, Diagnosis, Differential, Endometrial Neoplasms pathology, Endometrial Neoplasms surgery, Endometrium growth & development, Endometrium surgery, Epithelium pathology, Female, Humans, Hysterectomy, Middle Aged, Mullerian Ducts growth & development, Abortion, Spontaneous diagnostic imaging, Adenocarcinoma, Clear Cell diagnosis, Carcinoma, Endometrioid diagnosis, Endometrial Neoplasms diagnosis, Endometrium pathology
- Published
- 2019
- Full Text
- View/download PDF
48. Luteinized Fibrothecoma.
- Author
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Haghayeghi K, Hansen K, and Quddus MR
- Subjects
- Female, Humans, Hysterectomy, Lutein metabolism, Middle Aged, Neoplasms, Complex and Mixed pathology, Neoplasms, Complex and Mixed surgery, Ovarian Neoplasms pathology, Ovarian Neoplasms surgery, Salpingo-oophorectomy, Thecoma pathology, Thecoma surgery, Fibroma diagnosis, Neoplasms, Complex and Mixed diagnosis, Ovarian Neoplasms diagnosis, Ovary pathology, Thecoma diagnosis
- Published
- 2019
- Full Text
- View/download PDF
49. Verrucous Carcinoma Arising in Association With Giant Condyloma.
- Author
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Wawire J, Hansen K, and Quddus MR
- Subjects
- Biomarkers, Tumor analysis, Carcinoma, Verrucous etiology, Carcinoma, Verrucous surgery, Condylomata Acuminata complications, Condylomata Acuminata surgery, Female, Humans, Middle Aged, Vulva surgery, Vulvar Neoplasms etiology, Vulvar Neoplasms surgery, Carcinoma, Verrucous diagnosis, Condylomata Acuminata diagnosis, Vulva pathology, Vulvar Neoplasms diagnosis
- Published
- 2019
- Full Text
- View/download PDF
50. Large Epithelial and Stromal Lesion of Breast: It's Not Always Phyllodes!
- Author
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Wawire J, Singh K, and Quddus MR
- Subjects
- Angiomatosis, Breast Diseases, Breast Neoplasms pathology, Diagnosis, Differential, Female, Fibroadenoma pathology, Humans, Hyperplasia, Phyllodes Tumor pathology, Breast pathology, Breast Neoplasms diagnosis, Fibroadenoma diagnosis, Phyllodes Tumor diagnosis
- Published
- 2019
- Full Text
- View/download PDF
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