1. Anchored phylogenomics illuminates the skipper butterfly tree of life
- Author
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Naomi E. Pierce, Kelly M. Dexter, Masaya Yago, Andrew D. Warren, Andrew V. Z. Brower, Jesse W. Breinholt, David J. Lohman, Akito Y. Kawahara, Chandra Earl, Emmanuel F. A. Toussaint, and Marianne Espeland
- Subjects
0106 biological sciences ,0301 basic medicine ,Butterfly phylogenomics ,Evolution ,010603 evolutionary biology ,01 natural sciences ,Target capture ,03 medical and health sciences ,Species Specificity ,Eudaminae ,QH359-425 ,Animals ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Molecular systematics ,Likelihood Functions ,Hesperiidae ,Base Sequence ,Phylogenetic tree ,biology ,Papilionoidea ,Genomics ,biology.organism_classification ,Coalescent multi-species ,Grass skippers ,Lepidoptera ,030104 developmental biology ,Sister group ,Evolutionary biology ,Anchored hybrid enrichment ,Coeliadinae ,Firetips ,Parsimony ,Butterflies ,Pyrgini ,Research Article ,Maximum likelihood - Abstract
Background Butterflies (Papilionoidea) are perhaps the most charismatic insect lineage, yet phylogenetic relationships among them remain incompletely studied and controversial. This is especially true for skippers (Hesperiidae), one of the most species-rich and poorly studied butterfly families. Methods To infer a robust phylogenomic hypothesis for Hesperiidae, we sequenced nearly 400 loci using Anchored Hybrid Enrichment and sampled all tribes and more than 120 genera of skippers. Molecular datasets were analyzed using maximum-likelihood, parsimony and coalescent multi-species phylogenetic methods. Results All analyses converged on a novel, robust phylogenetic hypothesis for skippers. Different optimality criteria and methodologies recovered almost identical phylogenetic trees with strong nodal support at nearly all nodes and all taxonomic levels. Our results support Coeliadinae as the sister group to the remaining skippers, the monotypic Euschemoninae as the sister group to all other subfamilies but Coeliadinae, and the monophyly of Eudaminae plus Pyrginae. Within Pyrginae, Celaenorrhinini and Tagiadini are sister groups, the Neotropical firetips, Pyrrhopygini, are sister to all other tribes but Celaenorrhinini and Tagiadini. Achlyodini is recovered as the sister group to Carcharodini, and Erynnini as sister group to Pyrgini. Within the grass skippers (Hesperiinae), there is strong support for the monophyly of Aeromachini plus remaining Hesperiinae. The giant skippers (Agathymus and Megathymus) once classified as a subfamily, are recovered as monophyletic with strong support, but are deeply nested within Hesperiinae. Conclusions Anchored Hybrid Enrichment sequencing resulted in a large amount of data that built the foundation for a new, robust evolutionary tree of skippers. The newly inferred phylogenetic tree resolves long-standing systematic issues and changes our understanding of the skipper tree of life. These resultsenhance understanding of the evolution of one of the most species-rich butterfly families. Electronic supplementary material The online version of this article (10.1186/s12862-018-1216-z) contains supplementary material, which is available to authorized users.
- Published
- 2018
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