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83 results on '"Purnelle, B."'

1. The genome sequence of Schizosaccharomyces pombe

Author

Wood, V., Gwilliam, R., Rajandream, M.-A., Lyne, M., Lyne, R., Stewart, A., Sgouros, J., Peat, N., Hayles, J., Baker, S., Basham, D., Bowman, S., Brooks, K., Brown, D., Brown, S., Chillingworth, T., Churcher, C., Collins, M., Connor, R., Cronin, A., Davis, P., Feltwell, T., Fraser, A., Gentles, S., Goble, A., Hamlin, N., Harris, D., Hidalgo, J., Hodgson, G., Holroyd, S., Hornsby, T., Howarth, S., Huckle, E. J., Hunt, S., Jagels, K., James, K., Jones, L., Jones, M., Leather, S., McDonald, S., McLean, J., Mooney, P., Moule, S., Mungall, K., Murphy, L., Niblett, D., Odell, C., Oliver, K., O'Neil, S., Pearson, D., Quail, M. A., Rabbinowitsch, E., Rutherford, K., Rutter, S., Saunders, D., Seeger, K., Sharp, S., Skelton, J., Simmonds, M., Squares, R., Squares, S., Stevens, K., Taylor, K., Taylor, R. G., Tivey, A., Walsh, S., Warren, T., Whitehead, S., Woodward, J., Volckaert, G., Aert, R., Robben, J., Grymonprez, B., Weltjens, I., Vanstreels, E., Rieger, M., Schafer, M., Muller-Auer, S., Gabel, C., Fuchs, M., Fritzc, C., Holzer, E., Moestl, D., Hilbert, H., Borzym, K., Langer, I., Beck, A., Lehrach, H., Reinhardt, R., Pohl, T. M., Eger, P., Zimmermann, W., Wedler, H., Wambutt, R., Purnelle, B., Goffeau, A., Cadieu, E., Dreano, S., Gloux, S., Lelaure, V., Mottier, S., Galibert, F., Aves, S. J., Xiang, Z., Hunt, C., Moore, K., Hurst, S. M., Lucas, M., Rochet, M., Gaillardin, C., Tallada, V. A., Garzon, A., Thode, G., Daga, R. R., Cruzado, L., Jimenez, J., Sanchez, M., del Rey, F., Benito, J., Dominguez, A., Revuelta, J. L., Moreno, S., Armstrong, J., Forsburg, S. L., Cerrutti, L., Lowe, T., McCombie, W. R., Paulsen, I., Potashkin, J., Shpakovski, G. V., Ussery, D., Barrell, B. G., and Nurse, P.

Subjects
Environmental issues, Science and technology, Zoology and wildlife conservation
Abstract

Author(s): V. Wood [1]; R. Gwilliam [1]; M.-A. Rajandream (corresponding author) [1]; M. Lyne [1]; R. Lyne [1]; A. Stewart [2]; J. Sgouros [2]; N. Peat [3]; J. Hayles [3]; [...]

Published
2002
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3. The complete DNA sequence of yeast chromosome III

Author

Oliver, S.G., van der Aart, Q.J.M., Agostoni-Carbone, M.L., Aigle, M., Alberghina, L., Alexandraki, D., Antoine, G., Anwar, R., Ballesta, J.P.G., Benit, P., Berben, G., Bergantino, E., Biteau, N., Bolle, P.A., Bolotin-Fukuhara, M., Brown, A., Brown, A.J.P., Buhler, J.M., Carcano, C., Carignani, G., Cederberg, H., Chanet, R., Contreras, R., Crouzet, M., Daignan-Fornier, B., Defoor, E., Delgado, M., Demolder, J., Doira, C., Dubois, E., Dujon, B., Dusterhoft, A., Erdmann, D., Esteban, M., Fabre, F., Fairhead, C., Faye, G., Feldmann, H., Fiers, W., Francingues-Gaillard, M.C., Franco, L., Frontali, L., Fukuhara, H., Fuller, L.J., Galland, P., Gent, M.E., Gigot, D., Gilliquet, V., Glansdorff, N., Goffeau, A., Grenson, M., Grisanti, P., Grivell, L.A., de Haan, M., Haasemann, M., Hatat, D., Hoenicka, J., Hegemann, J., Herbert, C.J., Hilger, F., Hohmann, S., Hollenberg, C.P., Huse, K., Iborra, F., Indge, K.J., Isono, K., Jacq, C., Jacquet, M., James, C.M., Jauniaux, J.C., Jia, Y., Jimenez, A., Kelly, A., Kleinhans, U., Kreisl, P., Lanfranchi, G., Lewis, C., van der Linden, C.G., Lucchini, G., Lutzenkirchen, K., Maat, M.J., Mallet, L., Mannhaupt, G., Martegani, E., Mathieu, A., Maurer, C.T.C., McConnell, D., McKee, R.A., Messenguy, F., Mewes, H.W., Molemans, F., Montague, M.A., Muzi Falconi, M., Navas, L., Newlon, C.S., Noone, D., Pallier, C., Panzeri, L., Pearson, B.M., Perea, J., Philippsen, P., Pierard, A., Planta, R.J., Plevani, P., Poetsch, B., Pohl, F., Purnelle, B., Ramezani Rad, M., Rasmussen, S.W., Raynal, A., Remacha, M., Richterich, P., Roberts, A.B., Rodriguez, F., Sanz, E., Schaaff-Gerstenschlager, I., Scherens, B., Schweitzer, B., Shu, Y., Skala, J., Slonimski, P.P., Sor, F., Soustelle, C., Spiegelberg, R., Stateva, L.I., Steensma, H.Y., Steiner, S., Thierry, A., Thireos, G., Tzermia, M., Urrestarazu, L.A., Valle, G., Vetter, I., van Vliet-Reedijk, J.C., Voet, M., Volckaert, G., Vreken, P., Wang, H., Warmington, J.R., von Wettstein, D., Wicksteed, B.L., Wilson, C., Wurst, H., Xu, G., Yoshikawa, A., Zimmermann, F.K., and Sgouros, J.G.

Subjects
Saccharomyces -- Genetic aspects, Nucleotide sequence -- Research, Plant chromosomes -- Research, Genomes -- Research, Environmental issues, Science and technology, Zoology and wildlife conservation
Published
1992

4. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis

Author

Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessieres, P., Bolotin, A., Borchert, S., Borriss, R., Boursier, L., Brans, A., Braun, M., Brignell, S. C., Bron, S., Brouillet, S., Bruschi, C. V., Caldwell, B., Capuano, V., Carter, N. M., Choi, S.-K., Codani, J.-J., Connerton, I. F., Cummings, N. J., Daniel, R. A., Denizot, F., Devine, K. M., Dusterhoft, A., Ehrlich, S. D., Emmerson, P. T., Entian, K. D., Errington, J., Fabret, C., Ferrari, E., Foulger, D., Fritz, C., Fujita, M., Fujita, Y., Fuma, S., Galizzi, A., Galleron, N., Ghim, S.-Y., Glaser, P., Goffeau, A., Golightly, E. J., Grandi, G., Guiseppi, G., Guy, B. J., Haga, K., Haiech, J., Harwood, C. R., Henaut, A., Hilbert, H., Holsappel, S., Hosono, S., Hullo, M.-F., Itaya, M., Jones, L., Joris, B., Karamata, D., Kasahara, Y., Klaerr-Blanchard, M., Klein, C., Kobayashi, Y., Koetter, P., Koningstein, G., Krogh, S., Kumano, M., Kurita, K., Lapidus, A., Lardinois, S., Lauber, J., Lazarevic, V., Lee, S.-M., Levine, A., Liu, H., Masuda, S., Mauel, C., Medigue, C., Medina, N., Mellado, R. P., Mizuno, M., Moestl, D., Nakai, S., Noback, M., Noone, D., O'Reilly, M., Ogawa, K., Ogiwara, A., Oudega, B., Park, S.-H., Parro, V., Pohl, T. M., Portetelle, D., Porwollik, S., Prescott, A. M., Presecan, E., Pujic, P., Purnelle, B., Rapoport, G., Rey, M., Reynolds, S., Rieger, M., Rivolta, C., Rocha, E., Roche, B., Rose, M., Sadaie, Y., Sato, T., Scanlan, E., Schleich, S., Schroeter, R., Scoffone, F., Sekiguchi, J., Sekowska, A., Seror, S. J., Serror, P., Shin, B.-S., Soldo, B., Sorokin, A., Tacconi, E., Takagi, T., Takahashi, H., Takemaru, K., Takeuchi, M., Tamakoshi, A., Tanaka, T., Terpstra, P., Tognoni, A., Tosato, V., Uchiyama, S., Vandenbol, M., Vannier, F., Vassarotti, A., Viari, A., Wambutt, R., Wedler, E., Wedler, H., Weitzenegger, T., Winters, P., Wipat, A., Yamamoto, H., Yamane, K., Yasumoto, K., Yata, K., Yoshida, K., Yoshikawa, H.-F., Zumstein, E., Yoshikawa, H., and Danchin, A.

Published
1997

5. Progress in Arabidopsis genome sequencing and functional genomics

Author

Wambutt, R, Murphy, G, Volckaert, G, Pohl, T, Düsterhöft, A, Stiekema, W, Entian, K.-D, Terryn, N, Harris, B, Ansorge, W, Brandt, P, Grivell, L, Rieger, M, Weichselgartner, M, de Simone, V, Obermaier, B, Mache, R, Müller, M, Kreis, M, Delseny, M, Puigdomenech, P, Watson, M, Schmidtheini, T, Reichert, B, Portatelle, D, Perez-Alonso, M, Boutry, M, Bancroft, I, Vos, P, Hoheisel, J, Zimmermann, W, Wedler, H, Ridley, P, Langham, S.-A, McCullagh, B, Bilham, L, Robben, J, Van der Schueren, J, Grymonprez, B, Chuang, Y.-J, Vandenbussche, F, Braeken, M, Weltjens, I, Voet, M, Bastiaens, I, Aert, R, Defoor, E, Weitzenegger, T, Bothe, G, Ramsperger, U, Hilbert, H, Braun, M, Holzer, E, Brandt, A, Peters, S, van Staveren, M, Dirkse, W, Mooijman, P, Klein Lankhorst, R, Rose, M, Hauf, J, Kötter, P, Berneiser, S, Hempel, S, Feldpausch, M, Lamberth, S, Van den Daele, H, De Keyser, A, Buysshaert, C, Gielen, J, Villarroel, R, De Clercq, R, Van Montagu, M, Rogers, J, Cronin, A, Quail, M, Bray-Allen, S, Clark, L, Doggett, J, Hall, S, Kay, M, Lennard, N, McLay, K, Mayes, R, Pettett, A, Rajandream, M.-A, Lyne, M, Benes, V, Rechmann, S, Borkova, D, Blöcker, H, Scharfe, M, Grimm, M, Löhnert, T.-H, Dose, S, de Haan, M, Maarse, A, Schäfer, M, Müller-Auer, S, Gabel, C, Fuchs, M, Fartmann, B, Granderath, K, Dauner, D, Herzl, A, Neumann, S, Argiriou, A, Vitale, D, Liguori, R, Piravandi, E, Massenet, O, Quigley, F, Clabauld, G, Mündlein, A, Felber, R, Schnabl, S, Hiller, R, Schmidt, W, Lecharny, A, Aubourg, S, Gy, I, Cooke, R, Berger, C, Monfort, A, Casacuberta, E, Gibbons, T, Weber, N, Vandenbol, M, Bargues, M, Terol, J, Torres, A, Perez-Perez, A, Purnelle, B, Bent, E, Johnson, S, Tacon, D, Jesse, T, Heijnen, L, Schwarz, S, Scholler, P, Heber, S, Bielke, C, Frishmann, D, Haase, D, Lemcke, K, Mewes, H.W, Stocker, S, Zaccaria, P, Mayer, K, Schüller, C, and Bevan, M

Published
2000
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6. The Yeast Genome Directory

Author

Goffeau, A., Aert, R., Agostini-Carbone, M. L., Ahmed, A., Aigle, M., Alberghina, L., Albermann, K., Albers, M., Aldea, M., Alexandraki, D., Aljinovic, G., Allen, E., Alt-Mörbe, J., André, B., Andrews, S., Ansorge, W., Antoine, G., Anwar, R., Aparicio, A., Araujo, R., Arino, J., Arnold, F., Arroyo, J., Aviles, E., Backes, U., Baclet, M. C., Badcock, K., Bahr, A., Baladron, V., Ballesta, J. P. G., Bankier, A. T., Banrevi, A., Bargues, M., Baron, L., Barreiros, T., Barrell, B. G., Barthe, C., Barton, A. B., Baur, A., Bécam, A.-M., Becker, A., Becker, I., Beinhauer, J., Benes, V., Benit, P., Berben, G., Bergantino, E., Bergez, P., Berno, A., Bertani, I., Biteau, N., Bjourson, A. J., Blöcker, H., Blugeon, C., Bohn, C., Boles, E., Bolle, P. A., Bolotin-Fukuhara, M., Bordonné, R., Boskovic, J., Bossier, P., Botstein, D., Bou, G., Bowman, S., Boyer, J., Brandt, P., Brandt, T., Brendel, M., Brennan, T., Brinkman, R., Brown, A., Brown, A. J. P., Brown, D., Brückner, M., Bruschi, C. V., Buhler, J. M., Buitrago, M. J., Bussereau, F., Bussey, H., Camasses, A., Carcano, C., Carignani, G., Carpenter, J., Casamayor, A., Casas, C., Castagnoli, L., Cederberg, H., Cerdan, E., Chalwatzis, N., Chanet, R., Chen, E., Chéret, G., Cherry, J. M., Chillingworth, T., Christiansen, C., Chuat, J.-C., Chung, E., Churcher, C., Churcher, C. M., Clark, M. W., Clemente, M. L., Coblenz, A., Coglievina, M., Coissac, E., Colleaux, L., Connor, R., Contreras, R., Cooper, J., Copsey, T., Coster, F., Coster, R., Couch, J., Crouzet, M., Cziepluch, C., Daignan-Fornier, B., Dal Paro, F., Dang, D. V., D’Angelo, M., Davies, C. J., Davis, K., Davis, R. W., De Antoni, A., Dear, S., Dedman, K., Defoor, E., De Haan, M., Delaveau, Th., Del Bino, S., Delgado, M., Delius, H., Delneri, D., Del Rey, F., Demolder, J., Démolis, N., Devlin, K., de Wergifosse, P., Dietrich, F. S., Ding, H., Dion, C., Dipaolo, T., Doignon, F., Doira, C., Domdey, H., Dover, J., Du, Z., Dubois, E., Dujon, B., Duncan, M., Durand, P., Düsterhöft, A., Düsterhus, S., Eki, T., El Bakkoury, M., Eide, L. G., Entian, K.-D., Eraso, P., Erdmann, D., Erfle, H., Escribano, V., Esteban, M., Fabiani, L., Fabre, F., Fairhead, C., Fartmann, B., Favello, A., Faye, G., Feldmann, H., Fernandes, L., Feroli, F., Feuermann, M., Fiedler, T., Fiers, W., Fleig, U. N., Flöth, M., Fobo, G. M., Fortin, N., Foury, F., Francingues-Gaillard, M. C., Franco, L., Fraser, A., Friesen, J.D., Fritz, C., Frontali, L., Fukuhara, H., Fulton, L., Fuller, L. J., Gabel, C., Gaillardin, C., Gaillon, L., Galibert, F., Galisson, F., Galland, P., Gamo, F.-J., Gancedo, C., Garcia-Cantalejo, J. M., García-Gonzalez, M. I., Garcia-Ramirez, J. J., García-Saéz, M., Gassenhuber, H., Gatius, M., Gattung, S., Geisel, C., Gent, M. E., Gentles, S., Ghazvini, M., Gigot, D., Gilliquet, V., Glansdorff, N., Gómez-Peris, A., Gonzaléz, A., Goulding, S. E., Granotier, C., Greco, T., Grenson, M., Grisanti, P., Grivell, L. A., Grothues, D., Gueldener, U., Guerreiro, P., Guzman, E., Haasemann, M., Habbig, B., Hagiwara, H., Hall, J., Hallsworth, K., Hamlin, N., Hand, N. J., Hanemann, V., Hani, J., Hankeln, T., Hansen, M., Harris, D., Harris, D. E., Hartzell, G., Hatat, D., Hattenhorst, U., Hawkins, J., Hebling, U., Hegemann, J., Hein, C., Hennemann, A., Hennessy, K., Herbert, C. J., Hernandez, K., Hernando, Y., Herrero, E., Heumann, K., Heuss- Neitzel, D., Hewitt, N., Hiesel, R., Hilbert, H., Hilger, F., Hillier, L., Ho, C., Hoenicka, J., Hofmann, B., Hoheisel, J., Hohmann, S., Hollenberg, C. P., Holmstrøm, K., Horaitis, O., Horsnell, T. S., Huang, M.-E., Hughes, B., Hunicke-Smith, S., Hunt, S., Hunt, S. E., Huse, K., Hyman, R. W., Iborra, F., Indge, K. J., Iraqui Houssaini, I., Isono, K., Jacq, C., Jacquet, M., Jacquier, A., Jagels, K., Jäger, W., James, C. M., Jauniaux, J. C., Jia, Y., Jier, M., Jimenez, A., Johnson, D., Johnston, L., Johnston, M., Jones, M., Jonniaux, J.-L., Kaback, D. B., Kallesøe, T., Kalman, S., Kalogeropoulos, A., Karpfinger-Hartl, L., Kashkari, D., Katsoulou, C., Kayser, A., Kelly, A., Keng, T., Keuchel, H., Kiesau, P., Kirchrath, L., Kirsten, J., Kleine, K., Kleinhans, U., Klima, R., Komp, C., Kordes, E., Korol, S., Kötter, P., Krämer, C., Kramer, B., Kreisl, P., Kucaba, T., Kuester, H., Kurdi, O., Laamanen, P., Lafuente, M. J., Landt, O., Lanfranchi, G., Langston, Y., Lashkari, D., Latreille, P., Lauquin, G., Le, T., Legrain, P., Legros, Y., Lepingle, A., Lesveque, H., Leuther, H., Lew, H., Lewis, C., Li, Z. Y., Liebl, S., Lin, A., Lin, D., Logghe, M., Lohan, A. J. E., Louis, E. J., Lucchini, G., Lutzenkirchen, K., Lyck, R., Lye, G., Maarse, A. C., Maat, M. J., Macri, C., Madania, A., Maftahi, M., Maia e Silva, A., Maillier, E., Mallet, L., Mannhaupt, G., Manus, V., Marathe, R., Marck, C., Marconi, A., Mardis, E., Martegani, E., Martin, R., Mathieu, A., Maurer, C. T. C., Mazón, M. J., Mazzoni, C., McConnell, D., McDonald, S., McKee, R. A., McReynolds, A. D. K., Melchioretto, P., Menezes, S., Messenguy, F., Mewes, H. W., Michaux, G., Miller, N., Minenkova, O., Miosga, T., Mirtipati, S., Möller-Rieker, S., Möstl, D., Molemans, F., Monnet, A., Monnier, A-L., Montague, M. A., Moro, M., Mosedale, D., Möstl, D., Moule, S., Mouser, L., Murakami, Y., Müller-Auer, S., Mulligan, J., Murphy, L., Muzi Falconi, M., Naitou, M., Nakahara, K., Namath, A., Nasr, F., Navas, L., Nawrocki, A., Nelson, J., Nentwich, U., Netter, P., Neu, R., Newlon, C. S., Nhan, M., Nicaud, J.-M., Niedenthal, R. K., Nombela, C., Noone, D., Norgren, R., Nußbaumer, B., Obermaier, B., Odell, C., Öfner, P., Oh, C., Oliver, K., Oliver, S. G., Ouellette, B. F., Ozawa, M., Paces, V., Pallier, C., Pandolfo, D., Panzeri, L., Paoluzi, S., Parle-Mcdermott, A. G., Pascolo, S., Patricio, N., Pauley, A., Paulin, L., Pearson, B. M., Pearson, D., Peluso, D., Perea, J., Pérez-Alonso, M., Pérez-Ortin, J. E., Perrin, A., Petel, F. X., Pettersson, B., Pfeiffer, F., Philippsen, P., Piérard, A., Piravandi, E., Planta, R. J., Plevani, P., Poch, O., Poetsch, B., Pohl, F. M., Pohl, T. M., Pöhlmann, R., Poirey, R., Portetelle, D., Portillo, F., Potier, S., Proft, M., Prydz, H., Pujol, A., Purnelle, B., Puzos, V., Rajandream, M. A., Ramezani Rad, M., Rasmussen, S. W., Raynal, A., Rechmann, S., Remacha, M., Revuelta, J. L., Rice, P., Richard, G-F., Richterich, P., Rieger, M., Rifken, L., Riles, L., Rinaldi, T., Rinke, M., Roberts, A. B., Roberts, D., Rodriguez, F., Rodriguez-Belmonte, E., Rodriguez-Pousada, C., Rodriguez-Torres, A. M., Rose, M., Rossau, R., Rowley, N., Rupp, T., Ruzzi, M., Saeger, W., Saiz, J. E., Saliola, M., Salom, D., Saluz, H. P., Sánchez-Perez, M., Santos, M. A., Sanz, E., Sanz, J. E., Saren, A.-M., Sartorello, F., Sasanuma, M., Sasanuma, S-I., Scarcez, T., Schaaf-Gerstenschläger, I., Schäfer, B., Schäfer, M., Scharfe, M., Scherens, B., Schroff, N., Sen-Gupta, M., Shibata, T., Schmidheini, T., Schmidt, E. R., Schneider, C., Scholler, P., Schramm, S., Schreer, A., Schröder, M., Schwager, C., Schwarz, S., Schwarzlose, C., Schweitzer, B., Schweizer, M., Sdicu, A-M., Sehl, P., Sensen, C., Sgouros, J. G., Shogren, T., Shore, L., Shu, Y., Skala, J., Skelton, J., Slonimski, P. P., Smit, P. H. M., Smith, V., Soares, H., Soeda, E., Soler-Mira, A., Sor, F., Soriano, N., Souciet, J. L., Soustelle, C., Spiegelberg, R., Stateva, L. I., Steensma, H. Y., Stegemann, J., Steiner, S., Stellyes, L., Sterky, F., Storms, R. K., St. Peter, H., Stucka, R., Taich, A., Talla, E., Tarassov, I., Tashiro, H., Taylor, P., Teodoru, C., Tettelin, H., Thierry, A., Thireos, G., Tobiasch, E., Tovan, D., Trevaskis, E., Tsuchiya, Y., Tzermia, M., Uhlen, M., Underwood, A., Unseld, M., Urbanus, J. H. M., Urrestarazu, A., Ushinsky, S., Valens, M., Valle, G., Van Broekhoven, A., Vandenbol, M., Van Der Aart, Q. J. M., Van Der Linden, C. G., Van Dyck, L., Vanoni, M., Van Vliet-Reedijk, J. C., Vassarotti, A., Vaudin, M., Vaughan, K., Verhasselt, P., Vetter, I., Vierendeels, F., Vignati, D., Vilela, C., Vissers, S., Vleck, C., Vo, D. T., Vo, D. H., Voet, M., Volckaert, G., Von Wettstein, D., Voss, H., Vreken, P., Wagner, G., Walsh, S. V., Wambutt, R., Wang, H., Wang, Y., Warmington, J. R., Waterston, R., Watson, M. D., Weber, N., Wedler, E., Wedler, H., Wei, Y., Whitehead, S., Wicksteed, B. L., Wiemann, S., Wilcox, L., Wilson, C., Wilson, R., Winant, A., Winnett, E., Winsor, B., Wipfli, P., Wölfl, S., Wohldman, P., Wolf, K., Wolfe, K. H., Wright, L. F., Wurst, H., Xu, G., Yamasaki, M., Yelton, M. A., Yokohama, K., Yoshikawa, A., Yuping, S., Zaccaria, P., Zagulski, M., Zimmermann, F. K., Zimmermann, J., Zimmermann, M., Zhong, W-W., Zollner, A., and Zumstein, E.

Published
1997
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7. The nucleotide sequence of Saccharomyces cerevisiae chromosome VII

Author

Tettelin, H, Agostoni Carbone, ML, Albermann, K, Albers, M, Arroyo J, Backes, U, Barreiros, T, Bertani, I, Bjourson, AJ, Bruckner, M, Bruschi, CV, Carignani, G, Castagnoli, L, Cerdan, E, Clemente, ML, Coblenz, A, Coglievina, M, Coissac, E, Defoor, E, Delbino, S, Delius, H, Delneri, D, Dewergifosse, P, Dujon, B, Durand, P, Goffeau, A, Guerreiro, P, Hani, J, Hansen, M, Hebling, U, Hernandez, K, Heumann, KHF, Hofmann, B, Indge, KJ, James, CM, Klima, R, Kötter, P, Kramer, B, Kramer, W, Lauquin, G, Leuther, H, Louis, EJ, Maillier, E, Marconi, A, Martegani, E, Mazon, MJ, Mazzoni, C, McReynolds, ADK, Melchioretto, P, Mewes, HW, Minenkova, O, Müller-Auer, S, Nawrocki, A, Netter, P, Neu, R, Nombela, C, Oliver, SG, Panzeri, L, Paoluzi, S, Plevani, P, Portetelle, D, Portillo, F, Potier, S, Purnelle, B, Rieger, M, Riles, L, Rinaldi, T, Rodrigues-Pousada, C, Rodriguez-Belmonte, E, Rodriguez-Torres, AM, Rose, M, Ruzzi, M, Saliola, M, Sanchez-Perez, M, Schäfer, B, Schäfer, M, Scharfe, M, Schmidheini, T, Schreer, A, Skala, J, Souciet, JLSHY, Talla, E, Thierry, A, Vandenbol, M, van der Aart, QJM, Van Dyck, L, Vanoni, M, Verhasselt, P, Voet, M, Volckaert, G, Wambutt, R, Watson, MD, Weber, N, Wedler, E, Wedler, H, Wipfli, P, Wolf, K, Wright, LF, Zaccaria, P, Zimmermann, M, Zollner, A, Kleine, K, Tettelin, H, Agostoni Carbone, M, Albermann, K, Albers, M, Arroyo, J, Backes, U, Barreiros, T, Bertani, I, Bjourson, A, Bruckner, M, Bruschi, C, Carignani, G, Castagnoli, L, Cerdan, E, Clemente, M, Coblenz, A, Coglievina, M, Coissac, E, Defoor, E, Delbino, S, Delius, H, Delneri, D, Dewergifosse, P, Dujon, B, Durand, P, Goffeau, A, Guerreiro, P, Hani, J, Hansen, M, Hebling, U, Hernandez, K, Heumann, K, Hofmann, B, Indge, K, James, C, Klima, R, Kötter, P, Kramer, B, Kramer, W, Lauquin, G, Leuther, H, Louis, E, Maillier, E, Marconi, A, Martegani, E, Mazon, M, Mazzoni, C, Mcreynolds, A, Melchioretto, P, Mewes, H, Minenkova, O, Müller-Auer, S, Nawrocki, A, Netter, P, Neu, R, Nombela, C, Oliver, S, Panzeri, L, Paoluzi, S, Plevani, P, Portetelle, D, Portillo, F, Potier, S, Purnelle, B, Rieger, M, Riles, L, Rinaldi, T, Rodrigues-Pousada, C, Rodriguez-Belmonte, E, Rodriguez-Torres, A, Rose, M, Ruzzi, M, Saliola, M, Sanchez-Perez, M, Schäfer, B, Schäfer, M, Scharfe, M, Schmidheini, T, Schreer, A, Skala, J, Souciet, J, Talla, E, Thierry, A, Vandenbol, M, van der Aart, Q, Van Dyck, L, Vanoni, M, Verhasselt, P, Voet, M, Volckaert, G, Wambutt, R, Watson, M, Weber, N, Wedler, E, Wedler, H, Wipfli, P, Wolf, K, Wright, L, Zaccaria, P, Zimmermann, M, Zollner, A, and Kleine, K

Subjects
Fungal Proteins, Open Reading Frames, Base Sequence, Sequence Homology, Amino Acid, Humans, Saccharomyces cerevisiae, Chromosomes, Fungal, DNA, Fungal, BIO/10 - BIOCHIMICA, genome sequencing, yeast
Abstract

The complete nucleotide sequence of Saccharomyces cerevisiae chromosome VII has 572 predicted open reading frames (ORFs), of which 341 are new. No correlation was found between G+C content and gene density along the chromosome, and their variations are random. Of the ORFs, 17% show high similarity to human proteins. Almost half of the ORFs could be classified in functional categories, and there is a slight increase in the number of transcription (7.0 %) and translation (5.2 %) factors when compared with the complete S. cerevisiae genome. Accurate verification procedures demonstrate that there are less than two errors per 10,000 base pairs in the published sequence

Published
1997

8. The genome sequence of Schizosaccharomyces pombe (vol 415, pg 871, 2002)

Author

Wood, V, Gwilliam, R, Rajandream, MA, Lyne, M, Lyne, R, Stewart, A, Sgouros, J, Peat, N, Hayles, J, Baker, S, Basham, D, Bowman, S, Brooks, K, Brown, D, Brown, S, Chillingworth, T, Churcher, C, Collins, M, Connor, R, Cronin, A, Davis, P, Feltwell, T, Fraser, A, Gentles, S, Goble, A, Hamlin, N, Harris, D, Hidalgo, J, Hodgson, G, Holroyd, S, Hornsby, T, Howarth, S, Huckle, EJ, Hunt, S, Jagels, K, James, K, Jones, L, Jones, M, Leather, S, McDonald, S, McLean, J, Mooney, P, Moule, S, Mungall, K, Murphy, L, Niblett, D, Odell, C, Oliver, K, O'Neil, S, Pearson, D, Quail, MA, Rabbinowitsch, E, Rutherford, K, Rutter, S, Saunders, D, Seeger, K, Sharp, S, Skelton, J, Simmonds, M, Squares, R, Squares, S, Stevens, K, Taylor, K, Taylor, RG, Tivey, A, Walsh, S, Warren, T, Whitehead, S, Woodward, J, Volckaert, G, Aert, R, Robben, J, Grymonprez, B, Weltjens, I, Vanstreels, E, Rieger, M, Schafer, M, Muller-Auer, S, Gabel, C, Fuchs, M, Dusterhoft, A, Fritzc, C, Holzer, E, Moestl, D, Hilbert, H, Borzym, K, Langer, I, Beck, A, Lehrach, H, Reinhardt, R, Pohl, TM, Eger, P, Zimmermann, W, Wedler, H, Wambutt, R, Purnelle, B, Goffeau, A, Cadieu, E, Dreano, S, Gloux, S, Lelaure, V, Mottier, S, Galibert, F, Aves, SJ, Xiang, Z, Hunt, C, Moore, K, Hurst, SM, Lucas, M, Rochet, M, Gaillardin, C, Tallada, VA, Garzon, A, Thode, G, Daga, RR, Cruzado, L, Jimenez, J, Sanchez, M, del Rey, F, Benito, J, Dominguez, A, Revuelta, JL, Moreno, S, Armstrong, J, Forsburg, SL, Cerutti, L, Lowe, T, McCombie, WR, Paulsen, I, Potashkin, J, Shpakovski, GV, Ussery, D, Barrell, BG, and Nurse, P

Published
2003

9. The composite genome of legume symbiont Sinorhizobium meliloti

Author

Galibert, F., Finan, T.M., Long, S.R., Pühler, A., Abola, P., Ampe, Frédéric, Barloy-Hubler, F., Barnett, M.J., Becker, A., Boistard, P., Bothe, G., Boutry, M., Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R.W., Dréano, S., Federspiel, N.A., Fisher, R.F., Gloux, S., Godrie, T., Goffeau, A., Golding, B., Gouzy, J., Gurjal, M., Hernandez-Lucas, I., Hong, A., Huizar, L., Hyman, R.W., Jones, T., Kahn, D., Kahn, M.L., Kalman, S., Keating, D.H., Kiss, E., Komp, C., Lelaure, V., Masuy, D., Palm, C., Peck, M.C., Pohl, T.M., Portetelle, D., Purnelle, B., Ramsperger, U., Surzycki, R., Thébault, P., Vandenbol, M., Vohölter, F.J., Weidner, S., Wells, D.H., Wong, K., Yeh, K.C., and Batut, J.

Subjects
GENOME, ANALYSE DE SEQUENCE, NODULE RACINAIRE, CHROMOSOME, FIXATION BIOLOGIQUE DE L'AZOTE, LEGUMINEUSE, PROTEINE, SYMBIOSE, BACTERIE, EVOLUTION
Published
2001

10. Sequence analysis of three Bacillus cereus loci carrying PlcR-regulated genes encoding degradative enzymes and enterotoxin

Author

Okstad, O.A., Gominet, M., Purnelle, B., Rose, M., Lereclus, Didier, Kolsto, A.B., Unité expérimentale de Lutte Biologique (ULB), Institut National de la Recherche Agronomique (INRA), and ProdInra, Migration

Subjects
POUVOIR PATHOGENE, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, [SDV.MP] Life Sciences [q-bio]/Microbiology and Parasitology, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
1999

11. The nucleotide sequence of Saccharomyces cerevisiae chromosome XII

Author

Mark Johnston, Hillier, L., Riles, L., Albermann, K., André, B., Ansorge, W., Benes, V., Brückner, M., Delius, H., Dubois, E., Düsterhöft, A., Entian, K. -D, Floeth, M., Goffeau, A., Hebling, U., Heumann, K., Heuss-Neitzel, D., Hilbert, H., Hilger, F., Kleine, K., Kötter, P., Louis, E. J., Messenguy, F., Mewes, H. W., Miosga, T., Möstl, D., Müller-Auer, S., Nentwich, U., Obermaier, B., Piravandi, E., Pohl, T. M., Portetelle, D., Purnelle, B., Rechmann, S., Rieger, M., Rinke, M., Rose, M., Scharfe, M., Scherens, B., Scholler, P., Schwager, C., Schwarz, S., Underwood, A. P., Urrestarazu, L. A., Vandenbol, M., Verhasselt, P., Vierendeels, F., Voet, M., Volckaert, G., Voss, H., Wambutt, R., Wedler, E., Wedler, H., Zimmermann, F. K., Zollner, A., Hani, J., and Hoheisel, J. D.

Subjects
Base Sequence, Molecular Sequence Data, Saccharomyces cerevisiae, Chromosomes, Fungal, DNA, Fungal, Article
Abstract

The yeast Saccharomyces cerevisiae is the pre-eminent organism for the study of basic functions of eukaryotic cells(1). All of the genes of this simple eukaryotic cell have recently been revealed by an international collaborative effort to determine the complete DNA sequence of its nuclear genome. Here we describe some of the features of chromosome XII.

Published
1997

12. The nucleotide sequence of Saccharomyces cerevisiae chromosome IV

Author

Jacq, C., Altmorbe, J., Andre, B., Arnold, W., Bahr, A., Ballesta, Jpg, Bargues, M., Baron, L., Becker, A., Biteau, N., Blocker, H., Blugeon, C., Boskovic, J., Brandt, P., Bruckner, M., Buitrago, Mj, Coster, F., Delaveau, T., Delrey, F., Dujon, B., Eide, Lg, Garciacantalejo, Jm, Goffeau, A., Gomezperis, A., Granotier, C., Hanemann, V., Hankeln, T., Hoheisel, Jd, Jager, W., Jimenez, A., Jonniaux, Jl, Kramer, C., Kuster, H., Laamanen, P., Legros, Y., Louis, E., Mollerrieker, S., Monnet, A., Moro, M., Mullerauer, S., Nussbaumer, B., Paricio, N., Paulin, L., Perea, J., Perezalonso, M., Perezortin, Je, Pohl, Tm, Prydz, H., Purnelle, B., Rasmussen, Sw, Remacha, M., Jose Luis Revuelta, Rieger, M., Salom, D., Saluz, Hp, Saiz, Je, Saren, Am, Schafer, M., Scharfe, M., Schmidt, Er, Schneider, C., Scholler, P., Schwarz, S., Solermira, A., Urrestarazu, La, Verhasselt, P., Vissers, S., Voet, M., Volckaert, G., Wagner, G., Wambutt, R., Wedler, E., Wedler, H., Wolfl, S., Harris, DE, Bowman, S., Brown, D., Churcher, Cm, Connor, R., Dedman, K., Gentles, S., Hamlin, N., Hunt, S., Jones, L., Mcdonald, S., Murphy, L., Niblett, D., Odell, C., Oliver, K., Rajandream, Ma, Richards, C., Shore, L., Walsh, Sv, Barrell, Bg, Dietrich, Fs, Mulligan, J., Allen, E., Araujo, R., Aviles, E., Berno, O., Carpenter, J., Chen, E., Cherry, Jm, Chung, E., Duncan, M., Hunickesmith, S., Hyman, R., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Oefner, P., Oh, C., Petel, Fx, Roberts, D., Schramm, S., Schroeder, M., Shogren, T., Shroff, N., Winant, A., Yelton, M., Botstein, D., Davis, Rw, Johnston, M., Hillier, L., Riles, L., Albermann, K., Hani, J., Heumann, K., Kleine, K., Mewes, Hw, Zollner, A., and Zaccaria, P.

Subjects
Multidisciplinary, Base Sequence, Molecular Sequence Data, Saccharomyces cerevisiae, Chromosomes, Fungal, DNA, Fungal
Abstract

The complete DNA sequence of the yeast Saccharomyces cerevisiae chromosome IV has been determined. Apart from chromosome XII, which contains the 1-2 Mb rDNA cluster, chromosome IV is the longest S. cerevisiae chromosome. It was split into three parts, which were sequenced by a consortium from the European Community, the Sanger Centre, and groups from St Louis and Stanford in the United States. The sequence of 1,531,974 base pairs contains 796 predicted or known genes, 318 (39.9%) of which have been previously identified. Of the 478 new genes, 225 (28.3%) are homologous to previously identified genes and 253 (32%) have unknown functions or correspond to spurious open reading frames (ORFs). On average there is one gene approximately every two kilobases. Superimposed on alternating regional variations in G+C composition, there is a large central domain with a lower G+C content that contains all the yeast transposon (Ty) elements and most of the tRNA genes. Chromosome IV shares with chromosomes II, V, XII, XIII and XV some long clustered duplications which partly explain its origin.

Published
1997

13. A 23911 bp region of the Bacillus subtilis genome comprising genes located upstream and downstream of the lev operon

Author

Parro, V., San Roman, M., Galindo, I., Purnelle, B., Bolotin, A., Sorokin, A., Mellado, R.P., ProdInra, Migration, Unité de recherche Génétique Microbienne (UGM), and Institut National de la Recherche Agronomique (INRA)

Subjects
[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, [SDV.MP] Life Sciences [q-bio]/Microbiology and Parasitology
Abstract

3 tables 1 graph.; International audience

Published
1997

14. A global analysis of protein expression profiles in Sinorhizobium meliloti: Discovery of new genes for nodule occupancy and stress adaptation

Author

UCL - SST/ISV - Institut des sciences de la vie, Djordjevic, Michael A., Chen, Han Cai, Natera, Siria, Van Noorden, Giel, Menzel, Christian, Taylor, Scott, Renard, Clotilde, Geiger, Otto, Weiller, Georg F., Galibert, F., Finan, T.M., Long, S.R., Puhler, A., Abola, P., Ampe, F., Barloy-Hubler, F., Barnett, M.J., Becker, A., Boistard, P., Bothe, G., Boutry, Marc, Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R.W., Dreano, S., Federspiel, N.A., Fisher, R.F., Gloux, S., Godrie, T., Goffeau, A., Golding, B., Gouzy, G., Gurjal, M., Hernandez-Lucas, I., Hong, A., Huizar, L., Hyman, R.W., Jones, T., Kahn, D., Kahn, M.L., Kalman, S., Keating, D.H., Kiss, E., Komp, C., Lelaure, V., Masuy, D., Palm, C., Peck, M.C., Pohl, T.M., Portetelle, D., Purnelle, B., Ramsperger, U., Surzycki, R., Thébault, P., Vandenbol, M., Vorhölter, F.-J., Weidner, S., Wells, D.H., Wong, K., Yeh, K.-C., Batut, J., UCL - SST/ISV - Institut des sciences de la vie, Djordjevic, Michael A., Chen, Han Cai, Natera, Siria, Van Noorden, Giel, Menzel, Christian, Taylor, Scott, Renard, Clotilde, Geiger, Otto, Weiller, Georg F., Galibert, F., Finan, T.M., Long, S.R., Puhler, A., Abola, P., Ampe, F., Barloy-Hubler, F., Barnett, M.J., Becker, A., Boistard, P., Bothe, G., Boutry, Marc, Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R.W., Dreano, S., Federspiel, N.A., Fisher, R.F., Gloux, S., Godrie, T., Goffeau, A., Golding, B., Gouzy, G., Gurjal, M., Hernandez-Lucas, I., Hong, A., Huizar, L., Hyman, R.W., Jones, T., Kahn, D., Kahn, M.L., Kalman, S., Keating, D.H., Kiss, E., Komp, C., Lelaure, V., Masuy, D., Palm, C., Peck, M.C., Pohl, T.M., Portetelle, D., Purnelle, B., Ramsperger, U., Surzycki, R., Thébault, P., Vandenbol, M., Vorhölter, F.-J., Weidner, S., Wells, D.H., Wong, K., Yeh, K.-C., and Batut, J.

Abstract

A proteomic examination of Sinorhizobium meliloti strain 1021 was undertaken using a combination of 2-D gel electrophoresis, peptide mass fingerprinting, and bioinformatics. Our goal was to identify (i) putative symbiosis- or nutrientstress-specific proteins, (ii) the biochemical pathways active under different conditions, (iii) potential new genes, and (iv) the extent of posttranslational modifications of S. meliloti proteins. In total, we identified the protein products of 810 genes (13.1% of the genome's coding capacity). The 810 genes generated 1,180 gene products, with chromosomal genes accounting for 78% of the gene products identified (18.8% of the chromosome's coding capacity). The activity of 53 metabolic pathways was inferred from bioinformatic analysis of proteins with assigned Enzyme Commission numbers. Of the remaining proteins that did not encode enzymes, ABC-type transporters composed 12.7% and regulatory proteins 3.4% of the total. Proteins with up to seven transmembrane domains were identified in membrane preparations. A total of 27 putative nodulespecific proteins and 35 nutrient-stress-specific proteins were identified and used as a basis to define genes and describe processes occurring in S. meliloti cells in nodules and under stress. Several nodule proteins from the plant host were present in the nodule bacteria preparations. We also identified seven potentially novel proteins not predicted from the DNA sequence. Post-translational modifications such as N-terminal processing could be inferred from the data. The posttranslational addition of UMP to the key regulator of nitrogen metabolism, PII, was demonstrated. This work demonstrates the utility of combining mass spectrometry with protein arraying or separation techniques to identify candidate genes involved in important biological processes and niche occupations that may be intransigent to other methods of gene expression profiling.

Published
2003

15. The composite genome of the legume symbiont Sinorhizobium meliloti.

Author

UCL - AGRO/CABI - Département de chimie appliquée et des bio-industries, Galibert, F, Finan, T M, Long, S R, Puhler, A, Abola, P, Ampe, F, Barloy-Hubler, F, Barnett, M J, Becker, A, Boistard, P, Bothe, G, Boutry, Marc, Bowser, L, Buhrmester, J, Cadieu, E, Capela, D, Chain, P, Cowie, A, Davis, R W, Dreano, S, Federspiel, N A, Fisher, R F, Gloux, S, Godrie, T, Goffeau, A, Golding, B, Gouzy, J, Gurjal, M, Hernandez-Lucas, I, Hong, A, Huizar, L, Hyman, R W, Jones, T, Kahn, D, Kahn, M L, Kalman, S, Keating, D H, Kiss, E, Komp, C, Lelaure, V, Masuy, D, Palm, C, Peck, M C, Pohl, T M, Portetelle, D, Purnelle, B, Ramsperger, U, Surzycki, R, Thebault, P, Vandenbol, M, Vorholter, F J, Weidner, S, Wells, D H, Wong, K, Yeh, K C, Batut, J, UCL - AGRO/CABI - Département de chimie appliquée et des bio-industries, Galibert, F, Finan, T M, Long, S R, Puhler, A, Abola, P, Ampe, F, Barloy-Hubler, F, Barnett, M J, Becker, A, Boistard, P, Bothe, G, Boutry, Marc, Bowser, L, Buhrmester, J, Cadieu, E, Capela, D, Chain, P, Cowie, A, Davis, R W, Dreano, S, Federspiel, N A, Fisher, R F, Gloux, S, Godrie, T, Goffeau, A, Golding, B, Gouzy, J, Gurjal, M, Hernandez-Lucas, I, Hong, A, Huizar, L, Hyman, R W, Jones, T, Kahn, D, Kahn, M L, Kalman, S, Keating, D H, Kiss, E, Komp, C, Lelaure, V, Masuy, D, Palm, C, Peck, M C, Pohl, T M, Portetelle, D, Purnelle, B, Ramsperger, U, Surzycki, R, Thebault, P, Vandenbol, M, Vorholter, F J, Weidner, S, Wells, D H, Wong, K, Yeh, K C, and Batut, J

Abstract

The scarcity of usable nitrogen frequently limits plant growth. A tight metabolic association with rhizobial bacteria allows legumes to obtain nitrogen compounds by bacterial reduction of dinitrogen (N2) to ammonium (NH4+). We present here the annotated DNA sequence of the alpha-proteobacterium Sinorhizobium meliloti, the symbiont of alfalfa. The tripartite 6.7-megabase (Mb) genome comprises a 3.65-Mb chromosome, and 1.35-Mb pSymA and 1.68-Mb pSymB megaplasmids. Genome sequence analysis indicates that all three elements contribute, in varying degrees, to symbiosis and reveals how this genome may have emerged during evolution. The genome sequence will be useful in understanding the dynamics of interkingdom associations and of life in soil environments.

Published
2001

16. The complete sequence of the yeast chromosome III

Author

Oliver, S. G., van der Aart, Q. J. M., Agostoni Carbone, M. L., Aigle, M., Alberghina, L., Alexandraki, D., Antoine, G., Anwar, R., Ballesta, J. P. G., Benit, P., Berben, G., Bergantino, Elisabetta, Biteau, N., Bolle, P. A., Bolotin Fukuhara, M., Brown, A., Brown, A. J. P., Buhler, J. M., Carcano, C., Carignani, G., Cederberg, H., Chanet, R., Contreras, R., Crouzet, M., Daignan Fornier, B., Defoor, E., Delgado, M., Demolder, J., Doira, C., Dubois, E., Dujon, B., Dusterhoft, A., Erdmann, D., Esteban, M., Fabre, F., Fairhead, C., Faye, G., Feldmann, H., Fiers, W., Francingues Gaillard, M. C., Franco, L., Frontali, L., Fukuhara, H., Fuller, L. J., Galland, P., Gent, M. E., Gigot, D., Gilliquet, V., Glansdorff, N., Goffeau, A., Grenson, M., Grisanti, P., Grivell, L. A., de Haan, M., Haasemann, M., Hatat, D., Hoenicka, J., Hegemann, J., Herbert, C. J., Hilger, F., Hohmann, S., Hollenberg, C. P., Huse, K., Iborra, F., Indje, K. J., Isono, K., Jacq, C., Jacquet, M., James, C. M., Jauniaux, J. C., Jia, Y., Jimenez, A., Kelly, A., Kleinhans, U., Kreisl, P., Lanfranchi, Gerolamo, Lewis, C, Vanderlinden, C. G., Lucchini, G., Lutzenkirchen, K, Maat, M. J., Mallet, L., Mannhaupet, G., Martegani, E., Mathieu, A., Maurer, C. T. C., Mcconnell, D., Mckee, R. A., Messenguy, F., Mewes, H. W., Molemans, F., Montague, M. A., Muzi Falconi, M., Navas, L., Newlon, C. S., Noone, D., Pallier, C., Panzeri, L., Pearson, B. M., Perea, J., Philippsen, P., Pierard, A., Planta, R. J., Plevani, P., Poetsch, B., Pohl, F., Purnelle, B., Ramezani Rad, M., Rasmussen, S. W., Raynal, A., Remacha, M., Richterich, P., Roberts, A. B., Rodriguez, F., Sanz, E., Schaaff Gerstenschlager, I., Scherens, B., Schweitzer, B., Shu, Y., Skala, J., Slonimski, P. P., Sor, F., Soustelle, C., Spiegelberg, R., Stateva, L. I., Steensma, S., Steiner, H. Y., Thierry, A., Thireos, G., Tzermia, M., Urrestarazu, L. A., Valle, Giorgio, Vetter, I., van Vliet Reedijk, J. C., Voet, M., Volckaert, G., Vreken, P., Wang, H., Warmington, J. R., von Wettstein, D., Wicksteed, B. L., Wilson, C., Wurst, H., Xu, G., Yoshikawa, A., Zimmermann, F. K., and Sgouros, J. G.

Published
1992

17. Progress in Arabidopsis genome sequencing and functional genomics

Author

UCL - SST/ISV - Institut des sciences de la vie, Wambutt, R, Murphy, G, Volckaert, G, Pohl, T, Düsterhöft, A, Stiekema, W, Entian, K.-D, Terryn, N, Harris, B, Ansorge, W, Brandt, P, Grivell, L, Rieger, M, Weichselgartner, M, de Simone, V, Obermaier, B, Mache, R, Müller, M, Kreis, M, Delseny, M, Puigdomenech, P, Watson, M, Schmidtheini, T, Reichert, B, Portatelle, D, Perez-Alonso, M, Boutry, Marc, Bancroft, I, Vos, P, Hoheisel, J, Zimmermann, W, Wedler, H, Ridley, P, Langham, S.-A, McCullagh, B, Bilham, L, Robben, J, Van der Schueren, J, Grymonprez, B, Chuang, Y.-J, Vandenbussche, F, Braeken, M, Weltjens, I, Voet, M, Bastiaens, I, Aert, R, Defoor, E, Weitzenegger, T, Bothe, G, Ramsperger, U, Hilbert, H, Braun, M, Holzer, E, Brandt, A, Peters, S, van Staveren, M, Dirkse, W, Mooijman, P, Klein Lankhorst, R, Rose, M, Hauf, J, Kötter, P, Berneiser, S, Hempel, S, Feldpausch, M, Lamberth, S, Van den Daele, H, De Keyser, A, Buysshaert, C, Gielen, J, Villarroel, R, De Clercq, R, Van Montagu, M, Rogers, J, Cronin, A, Quail, M, Bray-Allen, S, Clark, L, Doggett, J, Hall, S, Kay, M, Lennard, N, McLay, K, Mayes, R, Pettett, A, Rajandream, M.-A, Lyne, M, Benes, V, Rechmann, S, Borkova, D, Blöcker, H, Scharfe, M, Grimm, M, Löhnert, T.-H, Dose, S, de Haan, M, Maarse, A, Schäfer, M, Müller-Auer, S, Gabel, C, Fuchs, M, Fartmann, B, Granderath, K, Dauner, D, Herzl, A, Neumann, S, Argiriou, A, Vitale, D, Liguori, R, Piravandi, E, Massenet, O, Quigley, F, Clabauld, G, Mündlein, A, Felber, R, Schnabl, S, Hiller, R, Schmidt, W, Lecharny, A, Aubourg, S, Gy, I, Cooke, R, Berger, C, Monfort, A, Casacuberta, E, Gibbons, T, Weber, N, Vandenbol, M, Bargues, M, Terol, J, Torres, A, Perez-Perez, A, Purnelle, B, Bent, E, Johnson, S, Tacon, D, Jesse, T, Heijnen, L, Schwarz, S, Scholler, P, Heber, S, Bielke, C, Frishmann, D, Haase, D, Lemcke, K, Mewes, H.W, Stocker, S, Zaccaria, P, Mayer, K, Schüller, C, Bevan, M, UCL - SST/ISV - Institut des sciences de la vie, Wambutt, R, Murphy, G, Volckaert, G, Pohl, T, Düsterhöft, A, Stiekema, W, Entian, K.-D, Terryn, N, Harris, B, Ansorge, W, Brandt, P, Grivell, L, Rieger, M, Weichselgartner, M, de Simone, V, Obermaier, B, Mache, R, Müller, M, Kreis, M, Delseny, M, Puigdomenech, P, Watson, M, Schmidtheini, T, Reichert, B, Portatelle, D, Perez-Alonso, M, Boutry, Marc, Bancroft, I, Vos, P, Hoheisel, J, Zimmermann, W, Wedler, H, Ridley, P, Langham, S.-A, McCullagh, B, Bilham, L, Robben, J, Van der Schueren, J, Grymonprez, B, Chuang, Y.-J, Vandenbussche, F, Braeken, M, Weltjens, I, Voet, M, Bastiaens, I, Aert, R, Defoor, E, Weitzenegger, T, Bothe, G, Ramsperger, U, Hilbert, H, Braun, M, Holzer, E, Brandt, A, Peters, S, van Staveren, M, Dirkse, W, Mooijman, P, Klein Lankhorst, R, Rose, M, Hauf, J, Kötter, P, Berneiser, S, Hempel, S, Feldpausch, M, Lamberth, S, Van den Daele, H, De Keyser, A, Buysshaert, C, Gielen, J, Villarroel, R, De Clercq, R, Van Montagu, M, Rogers, J, Cronin, A, Quail, M, Bray-Allen, S, Clark, L, Doggett, J, Hall, S, Kay, M, Lennard, N, McLay, K, Mayes, R, Pettett, A, Rajandream, M.-A, Lyne, M, Benes, V, Rechmann, S, Borkova, D, Blöcker, H, Scharfe, M, Grimm, M, Löhnert, T.-H, Dose, S, de Haan, M, Maarse, A, Schäfer, M, Müller-Auer, S, Gabel, C, Fuchs, M, Fartmann, B, Granderath, K, Dauner, D, Herzl, A, Neumann, S, Argiriou, A, Vitale, D, Liguori, R, Piravandi, E, Massenet, O, Quigley, F, Clabauld, G, Mündlein, A, Felber, R, Schnabl, S, Hiller, R, Schmidt, W, Lecharny, A, Aubourg, S, Gy, I, Cooke, R, Berger, C, Monfort, A, Casacuberta, E, Gibbons, T, Weber, N, Vandenbol, M, Bargues, M, Terol, J, Torres, A, Perez-Perez, A, Purnelle, B, Bent, E, Johnson, S, Tacon, D, Jesse, T, Heijnen, L, Schwarz, S, Scholler, P, Heber, S, Bielke, C, Frishmann, D, Haase, D, Lemcke, K, Mewes, H.W, Stocker, S, Zaccaria, P, Mayer, K, Schüller, C, and Bevan, M

Published
2000

18. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

Author

UCL - SST/ISV - Institut des sciences de la vie, Mayer, K., Schüller, C., Wambutt, R., Murphy, G., Volckaert, G., Pohl, T., Düsterhöft, A., Stiekema, W., Entian, K.-D., Terryn, N., Harris, B., Ansorge, W., Brandt, P., Grivell, L., Rieger, M., Weichselgartner, M., de Simone, V., Obermaier, B., Mache, R., Müller, M., Kreis, M., Delseny, M., Puigdomenech, P., Watson, M., Schmidtheini, T., Reichert, B., Portatelle, D., Perez-Alonso, M., Boutry, Marc, Bancroft, I., Vos, P., Hoheisel, J., Zimmermann, W., Wedler, H., Ridley, P., Langham, S.-A., McCullagh, B., Bilham, L., Robben, J., Van der Schueren, J., Grymonprez, B., Chuang, Y.-J., Vandenbussche, F., Braeken, M., Weltjens, I., Voet, M., Bastiaens, I., Aert, R., Defoor, E., Weitzenegger, T., Bothe, G., Ramsperger, U., Hilbert, H., Braun, M., Holzer, E., Brandt, A., Peters, S., van Staveren, M., Dirkse, W., Mooijman, P., Lankhorst, R. Klein, Rose, M., Hauf, J., Kötter, P., Berneiser, S., Hempel, S., Feldpausch, M., Lamberth, S., Van den Daele, H., De Keyser, A., Buysshaert, C., Gielen, J., Villarroel, R., De Clercq, R., Van Montagu, M., Rogers, J., Cronin, A., Quail, M., Bray-Allen, S., Clark, L., Doggett, J., Hall, S., Kay, M., Lennard, N., McLay, K., Mayes, R., Pettett, A., Rajandream, M.-A., Lyne, M., Benes, V., Rechmann, S., Borkova, D., Blöcker, H., Scharfe, M., Grimm, M., Löhnert, T.-H., Dose, S., de Haan, M., Maarse, A., Schäfer, M., Müller-Auer, S., Gabel, C., Fuchs, M., Fartmann, B., Granderath, K., Dauner, D., Herzl, A., Neumann, S., Argiriou, A., Vitale, D., Liguori, R., Piravandi, E., Massenet, O., Quigley, F., Clabauld, G., Mündlein, A., Felber, R., Schnabl, S., Hiller, R., Schmidt, W., Lecharny, A., Aubourg, S., Chefdor, F., Cooke, R., Berger, C., Montfort, A., Casacuberta, E., Gibbons, T., Weber, N., Vandenbol, M., Bargues, M., Terol, J., Torres, A., Perez-Perez, A., Purnelle, B., Bent, E., Johnson, S., Tacon, D., Jesse, T., Heijnen, L., Schwarz, S., Scholler, P., Heber, S., Francs, P., Bielke, C., Frishman, D., Haase, D., Lemcke, K., Mewes, H. W., Stocker, S., Zaccaria, P., Wilson, R. K., de la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Abu-Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Dante, M., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Ryan, E., Andrews, S., Geisel, C., Layman, D., Du, H., Ali, J., Berghoff, A., Jones, K., Drone, K., Cotton, M., Joshu, C., Antonoiu, B., Zidanic, M., Strong, C., Sun, H., Lamar, B., Yordan, C., Ma, P., Zhong, J., Preston, R., Vil, D., Shekher, M., Matero, A., Shah, R., Swaby, I'K., O'Shaughnessy, A., Rodriguez, M., Hoffman, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Martienssen, R., McCombie, W. R., UCL - SST/ISV - Institut des sciences de la vie, Mayer, K., Schüller, C., Wambutt, R., Murphy, G., Volckaert, G., Pohl, T., Düsterhöft, A., Stiekema, W., Entian, K.-D., Terryn, N., Harris, B., Ansorge, W., Brandt, P., Grivell, L., Rieger, M., Weichselgartner, M., de Simone, V., Obermaier, B., Mache, R., Müller, M., Kreis, M., Delseny, M., Puigdomenech, P., Watson, M., Schmidtheini, T., Reichert, B., Portatelle, D., Perez-Alonso, M., Boutry, Marc, Bancroft, I., Vos, P., Hoheisel, J., Zimmermann, W., Wedler, H., Ridley, P., Langham, S.-A., McCullagh, B., Bilham, L., Robben, J., Van der Schueren, J., Grymonprez, B., Chuang, Y.-J., Vandenbussche, F., Braeken, M., Weltjens, I., Voet, M., Bastiaens, I., Aert, R., Defoor, E., Weitzenegger, T., Bothe, G., Ramsperger, U., Hilbert, H., Braun, M., Holzer, E., Brandt, A., Peters, S., van Staveren, M., Dirkse, W., Mooijman, P., Lankhorst, R. Klein, Rose, M., Hauf, J., Kötter, P., Berneiser, S., Hempel, S., Feldpausch, M., Lamberth, S., Van den Daele, H., De Keyser, A., Buysshaert, C., Gielen, J., Villarroel, R., De Clercq, R., Van Montagu, M., Rogers, J., Cronin, A., Quail, M., Bray-Allen, S., Clark, L., Doggett, J., Hall, S., Kay, M., Lennard, N., McLay, K., Mayes, R., Pettett, A., Rajandream, M.-A., Lyne, M., Benes, V., Rechmann, S., Borkova, D., Blöcker, H., Scharfe, M., Grimm, M., Löhnert, T.-H., Dose, S., de Haan, M., Maarse, A., Schäfer, M., Müller-Auer, S., Gabel, C., Fuchs, M., Fartmann, B., Granderath, K., Dauner, D., Herzl, A., Neumann, S., Argiriou, A., Vitale, D., Liguori, R., Piravandi, E., Massenet, O., Quigley, F., Clabauld, G., Mündlein, A., Felber, R., Schnabl, S., Hiller, R., Schmidt, W., Lecharny, A., Aubourg, S., Chefdor, F., Cooke, R., Berger, C., Montfort, A., Casacuberta, E., Gibbons, T., Weber, N., Vandenbol, M., Bargues, M., Terol, J., Torres, A., Perez-Perez, A., Purnelle, B., Bent, E., Johnson, S., Tacon, D., Jesse, T., Heijnen, L., Schwarz, S., Scholler, P., Heber, S., Francs, P., Bielke, C., Frishman, D., Haase, D., Lemcke, K., Mewes, H. W., Stocker, S., Zaccaria, P., Wilson, R. K., de la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Abu-Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Dante, M., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Ryan, E., Andrews, S., Geisel, C., Layman, D., Du, H., Ali, J., Berghoff, A., Jones, K., Drone, K., Cotton, M., Joshu, C., Antonoiu, B., Zidanic, M., Strong, C., Sun, H., Lamar, B., Yordan, C., Ma, P., Zhong, J., Preston, R., Vil, D., Shekher, M., Matero, A., Shah, R., Swaby, I'K., O'Shaughnessy, A., Rodriguez, M., Hoffman, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Martienssen, R., and McCombie, W. R.

Abstract

The higher plant Arabidopsis thaliana (Arabidopsis) is an important model for identifying plant genes and determining their function. To assist biological investigations and to define chromosome structure, a coordinated effort to sequence the Arabidopsis genome was initiated in late 1996. Here we report one of the first milestones of this project, the sequence of chromosome 4. Analysis of 17.38 megabases of unique sequence, representing about 17% of the genome, reveals 3,744 protein coding genes, 81 transfer RNAs and numerous repeat elements. Heterochromatic regions surrounding the putative centromere, which has not yet been completely sequenced, are characterized by an increased frequency of a variety of repeats, new repeats, reduced recombination, lowered gene density and lowered gene expression. Roughly 60% of the predicted protein-coding genes have been functionally characterized on the basis of their homology to known genes. Many genes encode predicted proteins that are homologous to human and Caenorhabditis elegans proteins.

Published
1999

19. corrigendum: The genome sequence of Schizosaccharomyces pombe

Author

Wood, V., Gwilliam, R., Rajandream, M.-A., Lyne, M., Lyne, R., Stewart, A., Sgouros, J., Peat, N., Hayles, J., Baker, S., Basham, D., Bowman, S., Brooks, K., Brown, D., Brown, S., Chillingworth, T., Churcher, C., Collins, M., Connor, R., Cronin, A., Davis, P., Feltwell, T., Fraser, A., Gentles, S., Goble, A., Hamlin, N., Harris, D., Hidalgo, J., Hodgson, G., Holroyd, S., Hornsby, T., Howarth, S., Huckle, E. J., Hunt, S., Jagels, K., James, K., Jones, L., Jones, M., Leather, S., McDonald, S., McLean, J., Mooney, P., Moule, S., Mungall, K., Murphy, L., Niblett, D., Odell, C., Oliver, K., O'Neil, S., Pearson, D., Quail, M. A., Rabbinowitsch, E., Rutherford, K., Rutter, S., Saunders, D., Seeger, K., Sharp, S., Skelton, J., Simmonds, M., Squares, R., Squares, S., Stevens, K., Taylor, K., Taylor, R. G., Tivey, A., Walsh, S., Warren, T., Whitehead, S., Woodward, J., Volckaert, G., Aert, R., Robben, J., Grymonprez, B., Weltjens, I., Vanstreels, E., Rieger, M., Schafer, M., Muller-Auer, S., Gabel, C., Fuchs, M., Dusterhoft, A., Fritzc, C., Holzer, E., Moestl, D., Hilbert, H., Borzym, K., Langer, I., Beck, A., Lehrach, H., Reinhardt, R., Pohl, T. M., Eger, P., Zimmermann, W., Wedler, H., Wambutt, R., Purnelle, B., Goffeau, A., Cadieu, E., Dreano, S., Gloux, S., Lelaure, V., Mottier, S., Galibert, F., Aves, S. J., Xiang, Z., Hunt, C., Moore, K., Hurst, S. M., Lucas, M., Rochet, M., Gaillardin, C., Tallada, V. A., Garzon, A., Thode, G., Daga, R. R., Cruzado, L., Jimenez, J., Sanchez, M., del Rey, F., Benito, J., Dominguez, A., Revuelta, J. L., Moreno, S., Armstrong, J., Forsburg, S. L., Cerutti, L., Lowe, T., McCombie, W. R., Paulsen, I., Potashkin, J., Shpakovski, G. V., Ussery, D., Barrell, B. G., and Nurse, P.

Subjects
Environmental issues, Science and technology, Zoology and wildlife conservation
Abstract

Author(s): V. Wood; R. Gwilliam; M.-A. Rajandream; M. Lyne; R. Lyne; A. Stewart; J. Sgouros; N. Peat; J. Hayles; S. Baker; D. Basham; S. Bowman; K. Brooks; D. Brown; S. [...]

Published
2003
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20. Erratum: corrigendum: The genome sequence of Schizosaccharomyces pombe

Author

Wood, V., primary, Gwilliam, R., additional, Rajandream, M.-A., additional, Lyne, M., additional, Lyne, R., additional, Stewart, A., additional, Sgouros, J., additional, Peat, N., additional, Hayles, J., additional, Baker, S., additional, Basham, D., additional, Bowman, S., additional, Brooks, K., additional, Brown, D., additional, Brown, S., additional, Chillingworth, T., additional, Churcher, C., additional, Collins, M., additional, Connor, R., additional, Cronin, A., additional, Davis, P., additional, Feltwell, T., additional, Fraser, A., additional, Gentles, S., additional, Goble, A., additional, Hamlin, N., additional, Harris, D., additional, Hidalgo, J., additional, Hodgson, G., additional, Holroyd, S., additional, Hornsby, T., additional, Howarth, S., additional, Huckle, E. J., additional, Hunt, S., additional, Jagels, K., additional, James, K., additional, Jones, L., additional, Jones, M., additional, Leather, S., additional, McDonald, S., additional, McLean, J., additional, Mooney, P., additional, Moule, S., additional, Mungall, K., additional, Murphy, L., additional, Niblett, D., additional, Odell, C., additional, Oliver, K., additional, O'Neil, S., additional, Pearson, D., additional, Quail, M. A., additional, Rabbinowitsch, E., additional, Rutherford, K., additional, Rutter, S., additional, Saunders, D., additional, Seeger, K., additional, Sharp, S., additional, Skelton, J., additional, Simmonds, M., additional, Squares, R., additional, Squares, S., additional, Stevens, K., additional, Taylor, K., additional, Taylor, R. G., additional, Tivey, A., additional, Walsh, S., additional, Warren, T., additional, Whitehead, S., additional, Woodward, J., additional, Volckaert, G., additional, Aert, R., additional, Robben, J., additional, Grymonprez, B., additional, Weltjens, I., additional, Vanstreels, E., additional, Rieger, M., additional, Schäfer, M., additional, Müller-Auer, S., additional, Gabel, C., additional, Fuchs, M., additional, Düsterhöft, A., additional, Fritzc, C., additional, Holzer, E., additional, Moestl, D., additional, Hilbert, H., additional, Borzym, K., additional, Langer, I., additional, Beck, A., additional, Lehrach, H., additional, Reinhardt, R., additional, Pohl, T. M., additional, Eger, P., additional, Zimmermann, W., additional, Wedler, H., additional, Wambutt, R., additional, Purnelle, B., additional, Goffeau, A., additional, Cadieu, E., additional, Dréano, S., additional, Gloux, S., additional, Lelaure, V., additional, Mottier, S., additional, Galibert, F., additional, Aves, S. J., additional, Xiang, Z., additional, Hunt, C., additional, Moore, K., additional, Hurst, S. M., additional, Lucas, M., additional, Rochet, M., additional, Gaillardin, C., additional, Tallada, V. A., additional, Garzon, A., additional, Thode, G., additional, Daga, R. R., additional, Cruzado, L., additional, Jimenez, J., additional, Sánchez, M., additional, del Rey, F., additional, Benito, J., additional, Domínguez, A., additional, Revuelta, J. L., additional, Moreno, S., additional, Armstrong, J., additional, Forsburg, S. L., additional, Cerutti, L., additional, Lowe, T., additional, McCombie, W. R., additional, Paulsen, I., additional, Potashkin, J., additional, Shpakovski, G. V., additional, Ussery, D., additional, Barrell, B. G., additional, and Nurse, P., additional

Published
2003
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21. The nucleotide sequence of Saccharomyces cerevisiae chromosome XV

Author

Dujon, B, Albermann, K, Aldea, M, Alexandraki, D, Ansorge, W, Arino, J, Benes, V, Bohn, C, BolotinFukuhara, M, Bordonne, R, Boyer, J, Camasses, A, Casamayor, A, Casas, C, Cheret, G, Cziepluch, C, DaignanFornier, B, Dang, V, deHaan, M, Delius, H, Durand, P, Fairhead, C, Feldmann, H, Gaillon, L, Galisson, F, Gamo, J, Gancedo, C, Goffeau, A, Goulding, E, Grivell, A, Habbig, B, Hand, J, Hani, J, Hattenhorst, U, Hebling, U, Hernando, Y, Herrero, E, Heumann, K, Hiesel, R, Hilger, F, Hofmann, B, Hollenberg, P, Hughes, B, Jauniaux, C, Kalogeropoulos, A, Katsoulou, C, Kordes, E, Lafuente, J, Landt, O, Louis, J, Maarse, C, Madania, A, Mannhaupt, G, Marck, C, Martin, P, Mewes, W, Michaux, G, Paces, V, ParleMcDermott, G, Pearson, M, Perrin, A, Pettersson, B, Poch, O, Pohl, M, Poirey, R, Portetelle, D, Pujol, A, Purnelle, B, Rad, R, Rechmann, S, Schwager, C, Schweizer, M, Sor, F, Sterky, Fredrik, Tarassov, A, Teodoru, C, Tettelin, H, Thierry, A, Tobiasch, E, Tzermia, M, Uhlen, Mathias, Unseld, M, Valens, M, Vandenbol, M, Vetter, I, Vicek, C, Voet, M, Volckaert, G, Voss, H, Wambutt, R, Wedler, H, Wiemann, S, Winsor, B, Wolfe, H, Zollner, A, Zumstein, E, Kleine, K, Dujon, B, Albermann, K, Aldea, M, Alexandraki, D, Ansorge, W, Arino, J, Benes, V, Bohn, C, BolotinFukuhara, M, Bordonne, R, Boyer, J, Camasses, A, Casamayor, A, Casas, C, Cheret, G, Cziepluch, C, DaignanFornier, B, Dang, V, deHaan, M, Delius, H, Durand, P, Fairhead, C, Feldmann, H, Gaillon, L, Galisson, F, Gamo, J, Gancedo, C, Goffeau, A, Goulding, E, Grivell, A, Habbig, B, Hand, J, Hani, J, Hattenhorst, U, Hebling, U, Hernando, Y, Herrero, E, Heumann, K, Hiesel, R, Hilger, F, Hofmann, B, Hollenberg, P, Hughes, B, Jauniaux, C, Kalogeropoulos, A, Katsoulou, C, Kordes, E, Lafuente, J, Landt, O, Louis, J, Maarse, C, Madania, A, Mannhaupt, G, Marck, C, Martin, P, Mewes, W, Michaux, G, Paces, V, ParleMcDermott, G, Pearson, M, Perrin, A, Pettersson, B, Poch, O, Pohl, M, Poirey, R, Portetelle, D, Pujol, A, Purnelle, B, Rad, R, Rechmann, S, Schwager, C, Schweizer, M, Sor, F, Sterky, Fredrik, Tarassov, A, Teodoru, C, Tettelin, H, Thierry, A, Tobiasch, E, Tzermia, M, Uhlen, Mathias, Unseld, M, Valens, M, Vandenbol, M, Vetter, I, Vicek, C, Voet, M, Volckaert, G, Voss, H, Wambutt, R, Wedler, H, Wiemann, S, Winsor, B, Wolfe, H, Zollner, A, Zumstein, E, and Kleine, K

Abstract

Chromosome XV was one of the last two chromosomes of Saccharomyces cerevisiae to be discovered(1). It is the third-largest yeast chromosome after chromosomes XII and IV, and is very similar in size to chromosome VII. It alone represents 9% of the yeast genome (8% if ribosomal DNA is included). When systematic sequencing of chromosome XV was started, 93 genes or markers were identified, and most of them were mapped(2). However, very little else was known about chromosome XV which, in contrast to shorter chromosomes, had not been the object of comprehensive genetic or molecular analysis. It was therefore decided to start sequencing chromosome XV only in the third phase of the European Yeast Genome Sequencing Programme, after experience was gained on chromosomes III, XI and II (refs 3-5). The sequence of chromosome XV has been determined from a set of partly overlapping cosmid clones derived from a unique yeast strain, and physically mapped at 3.3-kilobase resolution before sequencing. As well as numerous new open reading frames (ORFs) and genes encoding tRNA or small RNA molecules, the sequence of 1,091,283 base pairs confirms the high proportion of orphan genes and reveals a number of ancestral and successive duplications with other yeast chromosomes., QC 20100812

Published
1997
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22. The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications.

Author

Philippsen, Peter, Kleine, K, Pöhlmann, R, Düsterhöft, A, Hamberg, K, Hegemann, Johannes H, Obermaier, B, Urrestarazu, Luis, Aert, R, Albermann, K, Altmann, R, André, Bruno, Baladron, V, Ballesta, J P, Bécam, A M, Beinhauer, J, Boskovic, J, Buitrago, M J, Bussereau, F, Coster, F, Crouzet, M, D'Angelo, Maria Grazia, Dal Pero, F, De Antoni, A, Del Rey, F, Doignon, F, Domdey, H, Dubois, Evelyne, Fiedler, Thomas, Fleig, U, Floeth, M, Fritz, C, Gaillardin, C, Garcia-Cantalejo, J M, Glansdorff, N N, Goffeau, A, Gueldener, U, Herbert, C, Heumann, K, Heuss-Neitzel, D, Hilbert, H, Hinni, K, Iraqui Houssaini, Ismaïl, Jacquet, Maud, Jiménez, Ana I., Jonniaux, J L, Karpfinger, L, Lanfranchi, G, Lepingle, A, Levesque, H, Lyck, R, Maftahi, M, Mallet, L, Maurer, Konrad, Messenguy, Francine, Mewes, H W, Mösti, D, Nasr, F, Nicaud, Jean Marc, Niedenthal, R K, Pandolfo, D, Pierard, Annie, Piravandi, E, Planta, R J, Pohl, T M, Purnelle, B, Rebischung, C, Remacha, M, Revuelta, Jose L, Rinke, M, Saiz, J E, Sartorello, F, Scherens, Bart, Sen-Gupta, M, Soler-Mira, A, Urbanus, J H, Valle, Giorgio, Van Dyck, L, Verhasselt, P, Vierendeels, Fabienne, Vissers, Stephan, Voet, Marleen, Volckaert, Guido, Wach, A, Wambutt, R, Wedler, H, Zollner, A, Hani, J, Philippsen, Peter, Kleine, K, Pöhlmann, R, Düsterhöft, A, Hamberg, K, Hegemann, Johannes H, Obermaier, B, Urrestarazu, Luis, Aert, R, Albermann, K, Altmann, R, André, Bruno, Baladron, V, Ballesta, J P, Bécam, A M, Beinhauer, J, Boskovic, J, Buitrago, M J, Bussereau, F, Coster, F, Crouzet, M, D'Angelo, Maria Grazia, Dal Pero, F, De Antoni, A, Del Rey, F, Doignon, F, Domdey, H, Dubois, Evelyne, Fiedler, Thomas, Fleig, U, Floeth, M, Fritz, C, Gaillardin, C, Garcia-Cantalejo, J M, Glansdorff, N N, Goffeau, A, Gueldener, U, Herbert, C, Heumann, K, Heuss-Neitzel, D, Hilbert, H, Hinni, K, Iraqui Houssaini, Ismaïl, Jacquet, Maud, Jiménez, Ana I., Jonniaux, J L, Karpfinger, L, Lanfranchi, G, Lepingle, A, Levesque, H, Lyck, R, Maftahi, M, Mallet, L, Maurer, Konrad, Messenguy, Francine, Mewes, H W, Mösti, D, Nasr, F, Nicaud, Jean Marc, Niedenthal, R K, Pandolfo, D, Pierard, Annie, Piravandi, E, Planta, R J, Pohl, T M, Purnelle, B, Rebischung, C, Remacha, M, Revuelta, Jose L, Rinke, M, Saiz, J E, Sartorello, F, Scherens, Bart, Sen-Gupta, M, Soler-Mira, A, Urbanus, J H, Valle, Giorgio, Van Dyck, L, Verhasselt, P, Vierendeels, Fabienne, Vissers, Stephan, Voet, Marleen, Volckaert, Guido, Wach, A, Wambutt, R, Wedler, H, Zollner, A, and Hani, J

Abstract

In 1992 we started assembling an ordered library of cosmid clones from chromosome XIV of the yeast Saccharomyces cerevisiae. At that time, only 49 genes were known to be located on this chromosome and we estimated that 80% to 90% of its genes were yet to be discovered. In 1993, a team of 20 European laboratories began the systematic sequence analysis of chromosome XIV. The completed and intensively checked final sequence of 784,328 base pairs was released in April, 1996. Substantial parts had been published before or had previously been made available on request. The sequence contained 419 known or presumptive protein-coding genes, including two pseudogenes and three retrotransposons, 14 tRNA genes, and three small nuclear RNA genes. For 116 (30%) protein-coding sequences, one or more structural homologues were identified elsewhere in the yeast genome. Half of them belong to duplicated groups of 6-14 loosely linked genes, in most cases with conserved gene order and orientation (relaxed interchromosomal synteny). We have considered the possible evolutionary origins of this unexpected feature of yeast genome organization., Journal Article, Research Support, Non-U.S. Gov't, SCOPUS: ar.j, info:eu-repo/semantics/published

Published
1997

23. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

Author

Mayer, K., primary, Schüller, C., additional, Wambutt, R., additional, Murphy, G., additional, Volckaert, G., additional, Pohl, T., additional, Düsterhöft, A., additional, Stiekema, W., additional, Entian, K.-D., additional, Terryn, N., additional, Harris, B., additional, Ansorge, W., additional, Brandt, P., additional, Grivell, L., additional, Rieger, M., additional, Weichselgartner, M., additional, de Simone, V., additional, Obermaier, B., additional, Mache, R., additional, Müller, M., additional, Kreis, M., additional, Delseny, M., additional, Puigdomenech, P., additional, Watson, M., additional, Schmidtheini, T., additional, Reichert, B., additional, Portatelle, D., additional, Perez-Alonso, M., additional, Boutry, M., additional, Bancroft, I., additional, Vos, P., additional, Hoheisel, J., additional, Zimmermann, W., additional, Wedler, H., additional, Ridley, P., additional, Langham, S.-A., additional, McCullagh, B., additional, Bilham, L., additional, Robben, J., additional, Van der Schueren, J., additional, Grymonprez, B., additional, Chuang, Y.-J., additional, Vandenbussche, F., additional, Braeken, M., additional, Weltjens, I., additional, Voet, M., additional, Bastiaens, I., additional, Aert, R., additional, Defoor, E., additional, Weitzenegger, T., additional, Bothe, G., additional, Ramsperger, U., additional, Hilbert, H., additional, Braun, M., additional, Holzer, E., additional, Brandt, A., additional, Peters, S., additional, van Staveren, M., additional, Dirkse, W., additional, Mooijman, P., additional, Lankhorst, R. Klein, additional, Rose, M., additional, Hauf, J., additional, Kötter, P., additional, Berneiser, S., additional, Hempel, S., additional, Feldpausch, M., additional, Lamberth, S., additional, Van den Daele, H., additional, De Keyser, A., additional, Buysshaert, C., additional, Gielen, J., additional, Villarroel, R., additional, De Clercq, R., additional, Van Montagu, M., additional, Rogers, J., additional, Cronin, A., additional, Quail, M., additional, Bray-Allen, S., additional, Clark, L., additional, Doggett, J., additional, Hall, S., additional, Kay, M., additional, Lennard, N., additional, McLay, K., additional, Mayes, R., additional, Pettett, A., additional, Rajandream, M.-A., additional, Lyne, M., additional, Benes, V., additional, Rechmann, S., additional, Borkova, D., additional, Blöcker, H., additional, Scharfe, M., additional, Grimm, M., additional, Löhnert, T.-H., additional, Dose, S., additional, de Haan, M., additional, Maarse, A., additional, Schäfer, M., additional, Müller-Auer, S., additional, Gabel, C., additional, Fuchs, M., additional, Fartmann, B., additional, Granderath, K., additional, Dauner, D., additional, Herzl, A., additional, Neumann, S., additional, Argiriou, A., additional, Vitale, D., additional, Liguori, R., additional, Piravandi, E., additional, Massenet, O., additional, Quigley, F., additional, Clabauld, G., additional, Mündlein, A., additional, Felber, R., additional, Schnabl, S., additional, Hiller, R., additional, Schmidt, W., additional, Lecharny, A., additional, Aubourg, S., additional, Chefdor, F., additional, Cooke, R., additional, Berger, C., additional, Montfort, A., additional, Casacuberta, E., additional, Gibbons, T., additional, Weber, N., additional, Vandenbol, M., additional, Bargues, M., additional, Terol, J., additional, Torres, A., additional, Perez-Perez, A., additional, Purnelle, B., additional, Bent, E., additional, Johnson, S., additional, Tacon, D., additional, Jesse, T., additional, Heijnen, L., additional, Schwarz, S., additional, Scholler, P., additional, Heber, S., additional, Francs, P., additional, Bielke, C., additional, Frishman, D., additional, Haase, D., additional, Lemcke, K., additional, Mewes, H. W., additional, Stocker, S., additional, Zaccaria, P., additional, Bevan, M., additional, Wilson, R. K., additional, de la Bastide, M., additional, Habermann, K., additional, Parnell, L., additional, Dedhia, N., additional, Gnoj, L., additional, Schutz, K., additional, Huang, E., additional, Spiegel, L., additional, Sehkon, M., additional, Murray, J., additional, Sheet, P., additional, Cordes, M., additional, Abu-Threideh, J., additional, Stoneking, T., additional, Kalicki, J., additional, Graves, T., additional, Harmon, G., additional, Edwards, J., additional, Latreille, P., additional, Courtney, L., additional, Cloud, J., additional, Abbott, A., additional, Scott, K., additional, Johnson, D., additional, Minx, P., additional, Bentley, D., additional, Fulton, B., additional, Miller, N., additional, Greco, T., additional, Kemp, K., additional, Kramer, J., additional, Fulton, L., additional, Mardis, E., additional, Dante, M., additional, Pepin, K., additional, Hillier, L., additional, Nelson, J., additional, Spieth, J., additional, Ryan, E., additional, Andrews, S., additional, Geisel, C., additional, Layman, D., additional, Du, H., additional, Ali, J., additional, Berghoff, A., additional, Jones, K., additional, Drone, K., additional, Cotton, M., additional, Joshu, C., additional, Antonoiu, B., additional, Zidanic, M., additional, Strong, C., additional, Sun, H., additional, Lamar, B., additional, Yordan, C., additional, Ma, P., additional, Zhong, J., additional, Preston, R., additional, Vil, D., additional, Shekher, M., additional, Matero, A., additional, Shah, R., additional, Swaby, I'K., additional, O'Shaughnessy, A., additional, Rodriguez, M., additional, Hoffman, J., additional, Till, S., additional, Granat, S., additional, Shohdy, N., additional, Hasegawa, A., additional, Hameed, A., additional, Lodhi, M., additional, Johnson, A., additional, Chen, E., additional, Marra, M., additional, Martienssen, R., additional, and McCombie, W. R., additional

Published
1999
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24. The nucleotide sequence of Saccharomyces cerevisiae chromosome XV

Author

Dujon, B., primary, Albermann, K., additional, Aldea, M., additional, Alexandraki, D., additional, Ansorge, W., additional, Arino, J., additional, Benes, V., additional, Bohn, C., additional, Bolotin-Fukuhara, M., additional, Bordonné, R., additional, Boyer, J., additional, Camasses, A., additional, Casamayor, A., additional, Casas, C., additional, Chéret, G., additional, Cziepluch, C., additional, Daignan-Fornier, B., additional, Dang, D. V., additional, de Haan, M., additional, Delius, H., additional, Durand, P., additional, Fairhead, C., additional, Feldmann, H., additional, Gaillon, L., additional, Galisson, F., additional, Gamo, F.-J., additional, Gancedo, C., additional, Goffeau, A., additional, Goulding, S. E., additional, Grivell, L. A., additional, Habbig, B., additional, Hand, N. J., additional, Hani, J., additional, Hattenhorst, U., additional, Hebling, U., additional, Hernando, Y., additional, Herrero, E., additional, Heumann, K., additional, Hiesel, R., additional, Hilger, F., additional, Hofmann, B., additional, Hollenberg, C. P., additional, Hughes, B., additional, Jauniaux, J.-C., additional, Kalogeropoulos, A., additional, Katsoulou, C., additional, Kordes, E., additional, Lafuente, M. J., additional, Landt, O., additional, Louis, E. J., additional, Maarse, A. C., additional, Madania, A., additional, Mannhaupt, G., additional, Marck, C., additional, Martin, R. P., additional, Mewes, H. W., additional, Michaux, G., additional, Paces, V., additional, Parle-McDermott, A. G., additional, Pearson, B. M., additional, Perrin, A., additional, Pettersson, B., additional, Poch, O., additional, Pohl, T. M., additional, Poirey, R., additional, Portetelle, D., additional, Pujol, A., additional, Purnelle, B., additional, Ramezani Rad, M., additional, Rechmann, S., additional, Schwager, C., additional, Schweizer, M., additional, Sor, F., additional, Sterky, F., additional, Tarassov, I. A., additional, Teodoru, C., additional, Tettelin, H., additional, Thierry, A., additional, Tobiasch, E., additional, Tzermia, M., additional, Uhlen, M., additional, Unseld, M., additional, Valens, M., additional, Vandenbol, M., additional, Vetter, I., additional, Vlcek, C., additional, Voet, M., additional, Volckaert, G., additional, Voss, H., additional, Wambutt, R., additional, Wedler, H., additional, Wiemann, S., additional, Winsor, B., additional, Wolfe, K. H., additional, Zollner, A., additional, Zumstein, E., additional, and Kleine, K., additional

Published
1997
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25. The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications

Author

Philippsen, P., primary, Kleine, K., additional, Pöhlmann, R., additional, Düsterhöft, A., additional, Hamberg, K., additional, Hegemann, J. H., additional, Obermaier, B., additional, Urrestarazu, L. A., additional, Aert, R., additional, Albermann, K., additional, Altmann, R., additional, André, B., additional, Baladron, V., additional, Ballesta, J. P. G., additional, Bécam, A.-M., additional, Beinhauer, J., additional, Boskovic, J., additional, Buitrago, M. J., additional, Bussereau, F., additional, Coster, F., additional, Crouzet, M., additional, D’Angelo, M., additional, Dal Pero, F., additional, De Antoni, A., additional, Del Rey, F., additional, Doignon, F., additional, Domdey, H., additional, Dubois, E., additional, Fiedler, T., additional, Fleig, U., additional, Floeth, M., additional, Fritz, C., additional, Gaillardin, C., additional, Garcia-Cantalejo, J. M., additional, N Glansdorff, N., additional, Goffeau, A., additional, Gueldener, U., additional, Herbert, C., additional, Heumann, K., additional, Heuss-Neitzel, D., additional, Hilbert, H., additional, Hinni, K., additional, Iraqui Houssaini, I., additional, Jacquet, M., additional, Jimenez, A., additional, Jonniaux, J.-L., additional, Karpfinger, L., additional, Lanfranchi, G., additional, Lepingle, A., additional, Levesque, H., additional, Lyck, R., additional, Maftahi, M., additional, Mallet, L., additional, Maurer, K. C. T., additional, Messenguy, F., additional, Mewes, H. W., additional, Möstl, D., additional, Nasr, F., additional, Nicaud, J.-M., additional, Niedenthal, R. K., additional, Pandolfo, D., additional, Piérard, A., additional, Piravandi, E., additional, Planta, R. J., additional, Pohl, T. M., additional, Purnelle, B., additional, Rebischung, C., additional, Remacha, M., additional, Revuelta, J. L., additional, Rinke, M., additional, Saiz, J. E., additional, Sartorello, F., additional, Scherens, B., additional, Sen-Gupta, M., additional, Soler-Mira, A., additional, Urbanus, J. H. M., additional, Valle, G., additional, Van Dyck, L., additional, Verhasselt, P., additional, Vierendeels, F., additional, Vissers, S., additional, Voet, M., additional, Volckaert, G., additional, Wach, A., additional, Wambutt, R., additional, Wedler, H., additional, Zollner, A., additional, and Hani, J., additional

Published
1997
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26. Complete DNA sequence of yeast chromosome XI

Author

Dujon, B., primary, Alexandraki, D., additional, André, B., additional, Ansorge, W., additional, Baladron, V., additional, Ballesta, J. P. G., additional, Banrevi, A., additional, Bolle, P. A., additional, Bolotin-Fukuhara, M., additional, Bossier, P., additional, Bou, G., additional, Boyer, J., additional, Buitrago, M. J., additional, Cherét, G., additional, Colleaux, L., additional, Dalgnan-Fornier, B., additional, del Rey, F., additional, Dion, C., additional, Domdey, H., additional, Düsterhöft, A., additional, Düsterhus, S., additional, Entian, K.-D., additional, Erfle, H., additional, Esteban, P. F., additional, Feldmann, H., additional, Fernandes, L., additional, Fobo, G. M., additional, Fritz, C., additional, Fukuhara, H., additional, Gabel, C., additional, Gaillon, L., additional, Carcia-Cantalejo, J. M., additional, Garcia-Ramirez, J. J., additional, Gent, M. E., additional, Ghazvini, M., additional, Goffeau, A., additional, Gonzaléz, A., additional, Grothues, D., additional, Guerreiro, P., additional, Hegemann, J., additional, Hewitt, N., additional, Hilger, F., additional, Hollenberg, C. P., additional, Horaitis, O., additional, Indge, K. J., additional, Jacquier, A., additional, James, C. M., additional, Jauniaux, J. C., additional, Jimenez, A., additional, Keuchel, H., additional, Kirchrath, L., additional, Kleine, K., additional, Kötter, P., additional, Legrain, P., additional, Liebl, S., additional, Louis, E. J., additional, Maia e Silva, A., additional, Marck, C., additional, Monnier, A.-L., additional, Möstl, D., additional, Müller, S., additional, Obermaier, B., additional, Oliver, S. G., additional, Pallier, C., additional, Pascolo, S., additional, Pfeiffer, F., additional, Philippsen, P., additional, Planta, R. J., additional, Pohl, F. M., additional, Pohl, T. M., additional, Pöhlmann, R., additional, Portetelle, D., additional, Purnelle, B., additional, Puzos, V., additional, Rad, M. Ramezani, additional, Rasmussen, S. W., additional, Remacha, M., additional, Revuelta, J. L., additional, Richard, G.-F., additional, Rieger, M., additional, Rodrigues-Pousada, C., additional, Rose, M., additional, Rupp, T., additional, Santos, M. A., additional, Schwager, C., additional, Sensen, C., additional, Skala, J., additional, Soares, H., additional, Sor, F., additional, Stegemann, J., additional, Tettelin, H., additional, Thierry, A., additional, Tzermia, M., additional, Urrestarazu, L. A., additional, van Dyck, L., additional, van Vliet-Reedijk, J. C., additional, Valens, M., additional, Vandenbo, M., additional, Vilela, C., additional, Vissers, S., additional, von Wettstein, D., additional, Voss, H., additional, Wiemann, S., additional, Xu, G., additional, Zimmermann, J., additional, Haasemann, M., additional, Becker, I., additional, and Mewes, H. W., additional

Published
1994
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28. Complete DNA sequence of yeast chromosome II

Author

Feldmann, H., Aigle, M., Aljinovic, G., André, B., Baclet, M. C., Barthe, C., Baur, A., Bécam, A. -M, Biteau, N., Boles, E., Brandt, T., Brendel, M., Brückner, M., Bussereau, F., Christiansen, C., Contreras, R., Crouzet, M., Cziepluch, C., Démolis, N., Delaveau, Th, Doignon, F., Domdey, H., Düsterhus, S., Dubois, E., Dujon, B., El Bakkoury, M., Entian, K. -D, Feuermann, M., Fiers, W., Fobo, G. M., Fritz, C., Gassenhuber, H., Glansdorff, N., Goffeau, A., Grivell, L. A., Haan, M., Hein, C., Herbert, C. J., Hollenberg, C. P., Holmstrøm, K., Jacq, C., Jacquet, M., Jauniaux, J. C., Jonniaux, J. -L, Kallesøe, T., Kiesau, P., Kirchrath, L., Kötter, P., Korol, S., Liebl, S., Logghe, M., Lohan, A. J. E., Louis, E. J., Li, Z. Y., Maat, M. J., Mallet, L., Mannhaupt, G., Messenguy, F., Miosga, T., Molemans, F., Müller, S., Nasr, F., Obermaier, B., Perea, J., Piérard, A., Piravandi, E., Pohl, F. M., Pohl, T. M., Potier, S., Markus Proft, Purnelle, B., Ramezani Rad, M., Rieger, M., Rose, M., Schaaff-Gerstenschläger, I., Scherens, B., Schwarzlose, C., Skala, J., Slonimski, P. P., Smits, P. H. M., Souciet, J. L., Steensma, H. Y., Stucka, R., Urrestarazu, A., Aart, Q. J. M., Dyck, L., Vassarotti, A., Vetter, I., Vierendeels, F., Vissers, S., Wagner, G., Wergifosse, P., Wolfe, K. H., Zagulski, M., Zimmermann, F. K., Mewes, H. W., Kleine, K., and Molecular Biology and Microbial Food Safety (SILS, FNWI)

29. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana

Author

Salanoubat, M., Lemcke, K., Rieger, M., Ansorge, W., Unseld, M., Fartmann, B., Valle, G., Blocker, H., Perez-Alonso, M., Obermaier, B., Delseny, M., Boutry, M., Grivell, La, Mache, R., Puigdomenech, P., Simone, V., Choisne, N., Artiguenave, F., Robert, C., Brottier, P., Wincker, P., Cattolico, L., Weissenbach, J., Saurin, W., Quetier, F., Schafer, M., Muller-Auer, S., Gabel, C., Fuchs, M., Benes, V., Wurmbach, E., Drzonek, H., Erfle, H., Jordan, N., Bangert, S., Wiedelmann, R., Kranz, H., Voss, H., Holland, R., Brandt, P., Nyakatura, G., Vezzi, A., D Angelo, M., Alberto Pallavicini, Toppo, S., Simionati, B., Conrad, A., Hornischer, K., Kauer, G., Lohnert, Th, Nordsiek, G., Reichelt, J., Scharfe, M., Schon, O., Bargues, M., Terol, J., Climent, J., Navarro, P., Collado, C., Perez-Perez, A., Ottenwalder, B., Duchemin, D., Cooke, R., Laudie, M., Berger-Llauro, C., Purnelle, B., Masuy, D., Haan, M., Maarse, Ac, Alcaraz, Jp, Cottet, A., Casacuberta, E., Monfort, A., Argiriou, A., Flores, M., Liguori, R., Vitale, D., Mannhaupt, G., Haase, D., Schoof, H., Rudd, S., Zaccaria, P., Mewes, Hw, Mayer, Kfx, Kaul, S., Town, Cd, Koo, Hl, Tallon, Lj, Jenkins, J., Rooney, T., Rizzo, M., Walts, A., Utterback, T., Fujii, Cy, Shea, Tp, Creasy, Th, Haas, B., Maiti, R., Wu, Dy, Peterson, J., Aken, S., Pai, G., Militscher, J., Sellers, P., Gill, Je, Feldblyum, Tv, Preuss, D., Lin, Xy, Nierman, Wc, Salzberg, Sl, White, O., Venter, Jc, Fraser, Cm, Kaneko, T., Nakamura, Y., Sato, S., Kato, T., Asamizu, E., Sasamoto, S., Kimura, T., Idesawa, K., Kawashima, K., Kishida, Y., Kiyokawa, C., Kohara, M., Matsumoto, M., Matsuno, A., Muraki, A., Nakayama, S., Nakazaki, N., Shinpo, S., Takeuchi, C., Wada, T., Watanabe, A., Yamada, M., Yasuda, M., Tabata, S., European Union Chromosome 3 Arabid, Inst Genomic Res, and Dna, Kazusa Res Inst

30. The nucleotide sequence of Saccharomyces cerevisiae chromosome VII

Author

Tettelin, H., Agostoni Carbone, M. L., Albermann, K., Albers, M., Arroyo, J., Backes, U., Barreiros, T., Bertani, I., Bjourson, A. J., Brückner, M., Bruschi, C. V., Carignani, G., Castagnoli, L., Cerdan, E., Clemente, M. L., Coblenz, A., Coglievina, M., Coissac, E., Defoor, E., Del Bino, S., Delius, H., Delneri, D., Wergifosse, P., Dujon, B., Durand, P., Entian, K. D., Eraso, P., Escribano, V., Fabiani, L., Fartmann, B., Feroli, F., Feuermann, M., Frontali, L., García-Gonzalez, M., García-Sáez, M. I., Goffeau, A., Guerreiro, P., Hani, J., Hansen, M., Hebling, U., Hernandez, K., Heumann, K., Hilger, F., Hofmann, B., Indge, K. J., James, C. M., Klima, R., Kötter, P., Kramer, B., Kramer, W., Lauquin, G., Leuther, H., Louis, E. J., Maillier, E., Marconi, A., Martegani, E., Mazón, M. J., Mazzoni, C., Mcreynolds, A. D. K., Melchioretto, P., Mewes, H. W., Minenkova, O., Müller-Auer, S., Nawrocki, A., Netter, P., Neu, R., Nombela, C., Oliver, S. G., Panzeri, L., Paoluzi, S., Plevani, P., Portetelle, D., Portillo, F., Potier, S., Purnelle, B., Rieger, M., Riles, L., Rinaldi, T., Robben, J., Rodrigues-Pousada, C., Rodriguez-Belmonte, E., Rodriguez-Torres, A. M., Rose, M., Maurizio RUZZI, Saliola, M., Sánchez-Perez, M., Schäfer, B., Schäfer, M., Scharfe, M., Schmidheini, T., Schreer, A., Skala, J., Souciet, J. L., Steensma, H. Y., Talla, E., Thierry, A., Vandenbol, M., Aart, Q. J. M., and Dyck, L.

31. Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X

Author

Galibert, F., Alexandraki, D., Baur, A., Boles, E., Chalwatzis, N., Chuat, Jc, Coster, F., Cziepluch, C., Dehaan, M., Domdey, H., Durand, P., Entian, Kd, Gatius, M., Goffeau, A., Grivell, La, Hennemann, A., Herbert, Cj, Heumann, K., Hilger, F., Hollenberg, Cp, Huang, Me, Jacq, C., Jauniaux, Jc, Katsoulou, C., Kirchrath, L., Kleine, K., Kordes, E., Kotter, P., Liebl, S., Louis, Ej, Manus, V., Mewes, Hw, Miosga, T., Obermaier, B., Perea, J., Pohl, T., Portetelle, D., Aurora Pujol, Purnelle, B., Rad, MR, Rasmussen, Sw, Rose, M., Rossau, R., Schaaffgerstenschlager, I., Smits, Phm, Scarcez, T., Soriano, N., Tovan, D., Tzermia, M., Vanbroekhoven, A., Vandenbol, M., Wedler, H., Wettstein, D., Wambutt, R., Zagulski, M., Zollner, A., and Karpfingerhartl, L.

32. The nucleotide sequence of Saccharomyces cerevisiae chromosome VII

Author

Tettelin, H., Carbone, Mla, Albermann, K., Albers, M., Arroyo, J., Backes, U., Barreiros, T., Bertani, I., Bjourson, Aj, Bruckner, M., Bruschi, Cv, Carignani, G., Castagnoli, L., Cerdan, E., Clemente, Ml, Coblenz, A., Coglievina, M., Coissac, E., Defoor, E., Delbino, S., Delius, H., Delneri, D., Dewergifosse, P., Dujon, B., Durand, P., Entian, Kd, Eraso, P., Escribano, V., Fabiani, L., Fartmann, B., Feroli, F., Feuermann, M., Frontali, L., Garciagonzalez, M., Garciasaez, Mi, Goffeau, A., Guerreiro, P., Hani, J., Hansen, M., Hebling, U., Hernandez, K., Heumann, K., Hilger, F., Hofmann, B., Indge, Kj, James, Cm, Klima, R., Kotter, P., Kramer, B., Kramer, W., Lauquin, G., Leuther, H., Louis, Ej, Maillier, E., Marconi, A., Martegani, E., Mazon, Mj, Mazzoni, C., Mcreynolds, Adk, Melchioretto, P., Mewes, Hw, Minenkova, O., Mullerauer, S., Nawrocki, A., Netter, P., Neu, R., César Nombela, Oliver, Sg, Panzeri, L., Paoluzi, S., Plevani, P., Portetelle, D., Portillo, F., Potier, S., Purnelle, B., Rieger, M., Riles, L., Rinaldi, T., Robben, J., Rodriguespousada, C., Rodriguezbelmonte, E., Rodrigueztorres, Am, Rose, M., Ruzzi, M., Saliola, M., Sanchezperez, M., Schafer, B., Schafer, M., Scharfe, M., Schmidhelni, T., Schreer, A., Skala, J., Souciet, Jl, Steensma, Hy, Talla, E., Thierry, A., Vandenbol, M., Vanderaart, Qjm, Vandyck, L., Vanoni, M., Verhasselt, P., Voet, M., Volckaert, G., Wambutt, R., Watson, Md, Weber, N., Wedler, E., Wedler, H., Wipfli, P., Wolf, K., Wright, Lf, Zaccaria, P., Zimmermann, M., Zollner, A., and Kleine, K.

Subjects
Multidisciplinary

33. A global analysis of protein expression profiles in Sinorhizobium meliloti: Discovery of new genes for nodule occupancy and stress adaptation

Author

Michael Djordjevic, Chen, H. C., Natera, S., Noorden, G., Menzel, C., Taylor, S., Renard, C., Geiger, O., Galibert, F., Finan, T. M., Long, S. R., Puhler, A., Abola, P., Ampe, F., Barloy-Hubler, F., Barnett, M. J., Becker, A., Boistard, P., Bothe, G., Boutry, M., Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R. W., Dreano, S., Federspiel, N. A., Fisher, R. F., Gloux, S., Godrie, T., Goffeau, A., Golding, B., Gouzy, G., Gurjal, M., Hernandez-Lucas, I., Hong, A., Huizar, L., Hyman, R. W., Jones, T., Kahn, D., Kahn, M. L., Kalman, S., Keating, D. H., Kiss, E., Komp, C., Lelaure, V., Masuy, D., Palm, C., Peck, M. C., Pohl, T. M., Portetelle, D., Purnelle, B., Ramsperger, U., Surzycki, R., Thébault, P., Vandenbol, M., Vorhölter, F. -J, Weidner, S., Wells, D. H., Wong, K., Yeh, K. -C, Batut, J., and Weiller, G. F.

34. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana

Author

Jean Weissenbach, William C. Nierman, Christopher D. Town, A Perez-Perez, R. Cooke, Brian J. Haas, Samir Kaul, T Kato, Claire Fujii, J Militscher, Mitsuyo Kohara, Steven L. Salzberg, A Conrad, Hans-Werner Mewes, D. Haase, M. Scharfe, S Bangert, Hean L. Koo, W. Ansorge, Laurence Cattolico, Patrick Wincker, Rama Maiti, Marcel Salanoubat, Erika Asamizu, Bénédicte Purnelle, Luke J. Tallon, M flores, Grace Pai, P Brottier, Kumi Idesawa, Richard Holland, P Sellers, J C Venter, S Nakayama, Michela D'Angelo, Holger Erfle, Berthold Fartmann, Ai Matsuno, Elena Casacuberta, Barbara Simionati, T Wada, R Wiedelmann, Amparo Monfort, Chiaki Kiyokawa, M. Rizzo, Jeremy Peterson, D. Vitale, Joan Climent, M. Schäfer, C Takeuchi, Gertrud Mannhaupt, Terrance Shea, P Navarro, Gerald Nyakatura, Pere Puigdomènech, R Mache, Leslie A. Grivell, S. van Aken, Paolo Zaccaria, Stephen Rudd, H. Voss, B Ottenwälder, Todd Creasy, J Reichelt, C Berger-Llauro, M Laudie, K Hornischer, H Drzonek, J P Alcaraz, Kai Lemcke, M Unseld, N Jordan, C Robert, Shusei Sato, T Kimura, S Müller-Auer, Naomi Nakazaki, W Saurin, Daphne Preuss, M. de Haan, J Jenkins, Francis Quetier, D Duchemin, Xiaoying Lin, Alberto Pallavicini, A Watanabe, Petra Brandt, Klaus F. X. Mayer, Heiko Schoof, M Yamada, Javier Terol, Satoshi Tabata, Benes, John Gill, François Artiguenave, Yoshie Kishida, Nathalie Choisne, O Schön, C. Gabel, E Wurmbach, Michael A. Rieger, Alessandro Vezzi, T Kaneko, T. H. Löhnert, Owen White, G Kauer, M Matsumoto, M. Fuchs, A Walts, G Nordsiek, Michel Delseny, Shigemi Sasamoto, H Kranz, Rosario Liguori, Yasukazu Nakamura, David Masuy, H. Blöcker, De Simone, Miho Yasuda, Tamara Feldblyum, B. Obermaier, Giorgio Valle, Manuel Pérez-Alonso, Sayaka Shinpo, Kumiko Kawashima, A Cottet, Anagnostis Argiriou, T Rooney, A.C. Maarse, Dongying Wu, C Collado, T. Utterback, Claire M. Fraser, M. D. Bargues, Stefano Toppo, Marc Boutry, Akiko Muraki, Salanoubat, M., Lemcke, K., Rieger, M., Ansorge, W., Unseld, M., Fartmann, B., Valle, G., Blocker, H., Perezalonso, M., Obermaier, B., Delseny, M., Boutry, M., Grivell, L. A., Mache, R., Puigdomenech, P., DE SIMONE, V., Choisne, N., Artiguenave, F., Robert, C., Brottier, P., Wincker, P., Cattolico, L., Weissenbach, J., Saurin, W., Quetier, F., Schafer, M., Mullerauer, S., Gabel, C., Fuchs, M., Benes, V., Wurmbach, E., Drzonek, H., Erfle, H., Jordan, N., Bangert, S., Wiedelmann, R., Kranz, H., Voss, H., Holland, R., Brandt, P., Nyakatura, G., Vezzi, A., D'Angelo, M., Pallavicini, Alberto, Toppo, S., Simionati, B., Conrad, A., Hornischer, K., Kauer, G., Lohnert, T. H., Nordsiek, G., Reichelt, J., Scharfe, M., Schon, O., Bargues, M., Terol, J., Climent, J., Navarro, P., Collado, C., Perezperez, A., Ottenwalder, B., Duchemin, D., Cooke, R., Laudie, M., Bergerllauro, C., Purnelle, B., Masuy, D., DE HAAN, M., Maarse, A. C., Alcaraz, J. P., Cottet, A., Casacuberta, E., Monfort, A., Argiriou, A., Flores, M., Liguori, R., Vitale, D., Mannhaupt, G., Haase, D., and Schoof, H.

Subjects
DNA, Plant, Sequence analysis, Arabidopsis, plant, Genome, Complete sequence, Gene Duplication, Centromere, Plant genomics, model organism, Humans, genomic structure, Gene, Plant Proteins, Genetics, Multidisciplinary, biology, Chromosome, Chromosome Mapping, Sequence Analysis, DNA, biology.organism_classification, genome sequencing, Chromosome 3, Genome, Plant
Abstract

Arabidopsis thaliana is an important model system for plant biologists. In 1996 an international collaboration (the Arabidopsis Genome Initiative) was formed to sequence the whole genome of Arabidopsis and in 1999 the sequence of the first two chromosomes was reported. The sequence of the last three chromosomes and an analysis of the whole genome are reported in this issue. Here we present the sequence of chromosome 3, organized into four sequence segments (contigs). The two largest (13.5 and 9.2 Mb) correspond to the top (long) and the bottom (short) arms of chromosome 3, and the two small contigs are located in the genetically defined centromere. This chromosome encodes 5,220 of the roughly 25,500 predicted protein-coding genes in the genome. About 20% of the predicted proteins have significant homology to proteins in eukaryotic genomes for which the complete sequence is available, pointing to important conserved cellular functions among eukaryotes.

Published
2000

35. Construction of 12 EST libraries and characterization of a 12,226 EST dataset for chicory (Cichorium intybus) root, leaves and nodules in the context of carbohydrate metabolism investigation.

Author

Dauchot N, Mingeot D, Purnelle B, Muys C, Watillon B, Boutry M, and Van Cutsem P

Subjects
Cluster Analysis, Databases, Genetic, Gene Expression Profiling, Genome, Plant, Plant Leaves genetics, Polymorphism, Single Nucleotide, RNA, Plant genetics, Root Nodules, Plant genetics, Seasons, Sequence Analysis, DNA, Carbohydrate Metabolism genetics, Cichorium intybus genetics, Expressed Sequence Tags, Gene Library
Abstract

Background: The industrial chicory, Cichorium intybus, is a member of the Asteraceae family that accumulates fructan of the inulin type in its root. Inulin is a low calories sweetener, a texture agent and a health promoting ingredient due to its prebiotic properties. Average inulin chain length is a critical parameter that is genotype and temperature dependent. In the context of the study of carbohydrate metabolism and to get insight into the transcriptome of chicory root and to visualize temporal changes of gene expression during the growing season, we obtained and characterized 10 cDNA libraries from chicory roots regularly sampled in field during a growing season. A leaf and a nodule libraries were also obtained for comparison., Results: Approximately 1,000 Expressed Sequence Tags (EST) were obtained from each of twelve cDNA libraries resulting in a 12,226 EST dataset. Clustering of these ESTs returned 1,922 contigs and 4,869 singlets for a total of 6,791 putative unigenes. All ESTs were compared to public sequence databases and functionally classified. Data were specifically searched for sequences related to carbohydrate metabolism. Season wide evolution of functional classes was evaluated by comparing libraries at the level of functional categories and unigenes distribution., Conclusion: This chicory EST dataset provides a season wide outlook of the genes expressed in the root and to a minor extent in leaves and nodules. The dataset contains more than 200 sequences related to carbohydrate metabolism and 3,500 new ESTs when compared to other recently released chicory EST datasets, probably because of the season wide coverage of the root samples. We believe that these sequences will contribute to accelerate research and breeding of the industrial chicory as well as of closely related species.

Published
2009
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36. Identification of a Nicotiana plumbaginifolia plasma membrane H(+)-ATPase gene expressed in the pollen tube.

Author

Lefebvre B, Arango M, Oufattole M, Crouzet J, Purnelle B, and Boutry M

Subjects
Base Sequence, Flowers genetics, Gene Expression Regulation, Enzymologic, Molecular Sequence Data, Organ Specificity, Phylogeny, Proton-Translocating ATPases metabolism, Sequence Alignment, Sequence Homology, Nucleic Acid, Nicotiana genetics, Cell Membrane enzymology, Flowers cytology, Flowers enzymology, Gene Expression Regulation, Plant, Proton-Translocating ATPases genetics, Nicotiana cytology, Nicotiana enzymology
Abstract

In Nicotiana plumbaginifolia, plasma membrane H(+)-ATPases (PMAs) are encoded by a gene family of nine members. Here, we report on the characterization of a new isogene, NpPMA5 (belonging to subfamily IV), and the determination of its expression pattern using the beta-glucuronidase (gusA) reporter gene. pNpPMA5-gusA was expressed in cotyledons, in vascular tissues of the stem (mainly in nodal zones), and in the flower and fruit. In the flower, high expression was found in the pollen tube after in vitro or in vivo germination. Northern blotting analysis confirmed that NpPMA5 was expressed in the pollen tube contrary to NpPMA2 (subfamily I) or NpPMA4 (subfamily II), two genes highly expressed in other tissues. The subcellular localization of PM H(+)-ATPase in the pollen tube was analyzed by immunocytodecoration. As expected, this enzyme was localized to the plasma membrane. However, neither the tip nor the base of the pollen tube was labeled, showing an asymmetrical distribution of this enzyme. This observation supports the hypothesis that the PM H(+)-ATPase is involved in creating the pH gradient that is observed along the pollen tube and is implicated in cell elongation. Compared to other plant PM H(+)-ATPases, the C-terminal region of NpPMA5 is shorter by 26 amino acid residues and is modified in the last 6 residues, due to a sequence rearrangement, which was also found in the orthologous gene of Nicotiana glutinosa, a Nicotiana species distant from N. plumbaginifolia and Petunia hybrida and Lycopersicon esculentum, other Solanacae species. This modification alters part of the PM H(+)-ATPase regulatory domain and raises the question whether this isoform is still regulated.

Published
2005
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37. The genome of the kinetoplastid parasite, Leishmania major.

Author

Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, Berriman M, Sisk E, Rajandream MA, Adlem E, Aert R, Anupama A, Apostolou Z, Attipoe P, Bason N, Bauser C, Beck A, Beverley SM, Bianchettin G, Borzym K, Bothe G, Bruschi CV, Collins M, Cadag E, Ciarloni L, Clayton C, Coulson RM, Cronin A, Cruz AK, Davies RM, De Gaudenzi J, Dobson DE, Duesterhoeft A, Fazelina G, Fosker N, Frasch AC, Fraser A, Fuchs M, Gabel C, Goble A, Goffeau A, Harris D, Hertz-Fowler C, Hilbert H, Horn D, Huang Y, Klages S, Knights A, Kube M, Larke N, Litvin L, Lord A, Louie T, Marra M, Masuy D, Matthews K, Michaeli S, Mottram JC, Müller-Auer S, Munden H, Nelson S, Norbertczak H, Oliver K, O'neil S, Pentony M, Pohl TM, Price C, Purnelle B, Quail MA, Rabbinowitsch E, Reinhardt R, Rieger M, Rinta J, Robben J, Robertson L, Ruiz JC, Rutter S, Saunders D, Schäfer M, Schein J, Schwartz DC, Seeger K, Seyler A, Sharp S, Shin H, Sivam D, Squares R, Squares S, Tosato V, Vogt C, Volckaert G, Wambutt R, Warren T, Wedler H, Woodward J, Zhou S, Zimmermann W, Smith DF, Blackwell JM, Stuart KD, Barrell B, and Myler PJ

Subjects
Animals, Chromatin genetics, Chromatin metabolism, Gene Expression Regulation, Genes, Protozoan, Genes, rRNA, Glycoconjugates biosynthesis, Glycoconjugates metabolism, Leishmania major chemistry, Leishmania major metabolism, Leishmaniasis, Cutaneous parasitology, Lipid Metabolism, Membrane Proteins biosynthesis, Membrane Proteins chemistry, Membrane Proteins genetics, Membrane Proteins metabolism, Molecular Sequence Data, Multigene Family, Protein Biosynthesis, Protein Processing, Post-Translational, Protozoan Proteins biosynthesis, Protozoan Proteins chemistry, Protozoan Proteins genetics, Protozoan Proteins metabolism, RNA Processing, Post-Transcriptional, RNA Splicing, RNA, Protozoan genetics, RNA, Protozoan metabolism, Transcription, Genetic, Genome, Protozoan, Leishmania major genetics, Sequence Analysis, DNA
Abstract

Leishmania species cause a spectrum of human diseases in tropical and subtropical regions of the world. We have sequenced the 36 chromosomes of the 32.8-megabase haploid genome of Leishmania major (Friedlin strain) and predict 911 RNA genes, 39 pseudogenes, and 8272 protein-coding genes, of which 36% can be ascribed a putative function. These include genes involved in host-pathogen interactions, such as proteolytic enzymes, and extensive machinery for synthesis of complex surface glycoconjugates. The organization of protein-coding genes into long, strand-specific, polycistronic clusters and lack of general transcription factors in the L. major, Trypanosoma brucei, and Trypanosoma cruzi (Tritryp) genomes suggest that the mechanisms regulating RNA polymerase II-directed transcription are distinct from those operating in other eukaryotes, although the trypanosomatids appear capable of chromatin remodeling. Abundant RNA-binding proteins are encoded in the Tritryp genomes, consistent with active posttranscriptional regulation of gene expression.

Published
2005
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38. Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus.

Author

Bolotin A, Quinquis B, Renault P, Sorokin A, Ehrlich SD, Kulakauskas S, Lapidus A, Goltsman E, Mazur M, Pusch GD, Fonstein M, Overbeek R, Kyprides N, Purnelle B, Prozzi D, Ngui K, Masuy D, Hancy F, Burteau S, Boutry M, Delcour J, Goffeau A, and Hols P

Subjects
Base Sequence, Conserved Sequence, Genome, Bacterial, Molecular Sequence Data, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Species Specificity, Streptococcus thermophilus classification, Streptococcus thermophilus pathogenicity, Bacterial Proteins genetics, Chromosome Mapping methods, Evolution, Molecular, Genomic Instability genetics, Streptococcal Infections genetics, Streptococcus thermophilus genetics, Virulence Factors genetics, Yogurt microbiology
Abstract

The lactic acid bacterium Streptococcus thermophilus is widely used for the manufacture of yogurt and cheese. This dairy species of major economic importance is phylogenetically close to pathogenic streptococci, raising the possibility that it has a potential for virulence. Here we report the genome sequences of two yogurt strains of S. thermophilus. We found a striking level of gene decay (10% pseudogenes) in both microorganisms. Many genes involved in carbon utilization are nonfunctional, in line with the paucity of carbon sources in milk. Notably, most streptococcal virulence-related genes that are not involved in basic cellular processes are either inactivated or absent in the dairy streptococcus. Adaptation to the constant milk environment appears to have resulted in the stabilization of the genome structure. We conclude that S. thermophilus has evolved mainly through loss-of-function events that remarkably mirror the environment of the dairy niche resulting in a severely diminished pathogenic potential.

Published
2004
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39. Identification of regulatory sequence elements within the transcription promoter region of NpABC1, a gene encoding a plant ABC transporter induced by diterpenes.

Author

Grec S, Vanham D, de Ribaucourt JC, Purnelle B, and Boutry M

Subjects
ATP-Binding Cassette Transporters metabolism, Acetates pharmacology, Base Sequence, Cell Line, Cyclopentanes pharmacology, DNA Footprinting methods, DNA Mutational Analysis methods, Deoxyribonuclease I metabolism, Electrophoretic Mobility Shift Assay, Ethylenes pharmacology, Gene Expression Regulation, Plant drug effects, Glucuronidase genetics, Glucuronidase metabolism, Molecular Sequence Data, Oxylipins, Plant Proteins genetics, Plant Proteins metabolism, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Salicylic Acid pharmacology, Sequence Deletion, Sequence Homology, Nucleic Acid, Nicotiana cytology, Nicotiana genetics, ATP-Binding Cassette Transporters genetics, Diterpenes pharmacology, Promoter Regions, Genetic genetics, Regulatory Sequences, Nucleic Acid genetics
Abstract

Expression of NpABC1, a gene encoding a plasma membrane ATP binding cassette (ABC) transporter in Nicotiana plumbaginifolia, is induced by sclareol, an antifungal diterpene produced at the leaf surface, as well as by sclareolide, a close analog. A genomic fragment including the 1282-bp region upstream of the NpABC1 transcription start was fused to the reporter beta-glucuronidase (gus) gene and introduced into N. tabacum BY2 cells for stable transformation. A 25-fold increase in gus expression was observed when cells were treated with sclareolide and some other terpenes. The combined use of 5'-deletion promoter analysis, gel mobility shift assays, DNase I footprinting, and site-directed mutagenesis allowed us to identify three cis-elements (sclareol box 1 (SB1), SB2, and SB3) located, respectively, within nucleotides -827 to -802, -278 to -243, and -216 to -190 upstream of the NpABC1 transcription start. In vivo evaluation of these elements on sclareolide-induced expression showed that mutation of SB1 reduced expression by twofold, while that of SB2 had no effect. On the other hand, SB3 had a marked effect as it completely abolished sclareolide-mediated expression. NpABC1-gus expression was not induced by the stress signals, salicylic acid and ethylene, but was mediated, to some extent, by methyl jasmonate, which is known to promote diterpene synthesis.

Published
2003
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40. Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.

Author

Capela D, Barloy-Hubler F, Gouzy J, Bothe G, Ampe F, Batut J, Boistard P, Becker A, Boutry M, Cadieu E, Dréano S, Gloux S, Godrie T, Goffeau A, Kahn D, Kiss E, Lelaure V, Masuy D, Pohl T, Portetelle D, Pühler A, Purnelle B, Ramsperger U, Renard C, Thébault P, Vandenbol M, Weidner S, and Galibert F

Subjects
Bacterial Proteins genetics, Carrier Proteins genetics, Cell Division genetics, Cell Movement genetics, Chromosomes, Artificial, Bacterial genetics, DNA Repair genetics, DNA Replication genetics, DNA, Bacterial genetics, DNA, Circular genetics, Energy Metabolism genetics, Fabaceae microbiology, Gene Duplication, Genes, Bacterial, Molecular Sequence Data, Plants, Medicinal, Replicon genetics, Sequence Analysis, DNA, Signal Transduction genetics, Symbiosis, Transcription, Genetic genetics, Virulence genetics, Chromosomes, Bacterial genetics, Sinorhizobium meliloti genetics
Abstract

Sinorhizobium meliloti is an alpha-proteobacterium that forms agronomically important N(2)-fixing root nodules in legumes. We report here the complete sequence of the largest constituent of its genome, a 62.7% GC-rich 3,654,135-bp circular chromosome. Annotation allowed assignment of a function to 59% of the 3,341 predicted protein-coding ORFs, the rest exhibiting partial, weak, or no similarity with any known sequence. Unexpectedly, the level of reiteration within this replicon is low, with only two genes duplicated with more than 90% nucleotide sequence identity, transposon elements accounting for 2.2% of the sequence, and a few hundred short repeated palindromic motifs (RIME1, RIME2, and C) widespread over the chromosome. Three regions with a significantly lower GC content are most likely of external origin. Detailed annotation revealed that this replicon contains all housekeeping genes except two essential genes that are located on pSymB. Amino acid/peptide transport and degradation and sugar metabolism appear as two major features of the S. meliloti chromosome. The presence in this replicon of a large number of nucleotide cyclases with a peculiar structure, as well as of genes homologous to virulence determinants of animal and plant pathogens, opens perspectives in the study of this bacterium both as a free-living soil microorganism and as a plant symbiont.

Published
2001
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41. The composite genome of the legume symbiont Sinorhizobium meliloti.

Author

Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, Huizar L, Hyman RW, Jones T, Kahn D, Kahn ML, Kalman S, Keating DH, Kiss E, Komp C, Lelaure V, Masuy D, Palm C, Peck MC, Pohl TM, Portetelle D, Purnelle B, Ramsperger U, Surzycki R, Thebault P, Vandenbol M, Vorholter FJ, Weidner S, Wells DH, Wong K, Yeh KC, and Batut J

Subjects
Bacterial Adhesion, Bacterial Proteins genetics, Carrier Proteins genetics, Chromosomes, Bacterial genetics, Computational Biology, DNA Transposable Elements, Energy Metabolism genetics, Evolution, Molecular, Gene Duplication, Genes, Bacterial, Genes, Essential, Genes, Regulator, Medicago sativa microbiology, Nitrogen metabolism, Nitrogen Fixation genetics, Plasmids, Polysaccharides, Bacterial genetics, Replicon, Rhizobiaceae genetics, Sinorhizobium meliloti physiology, Genome, Bacterial, Sequence Analysis, DNA, Sinorhizobium meliloti genetics, Symbiosis genetics
Abstract

The scarcity of usable nitrogen frequently limits plant growth. A tight metabolic association with rhizobial bacteria allows legumes to obtain nitrogen compounds by bacterial reduction of dinitrogen (N2) to ammonium (NH4+). We present here the annotated DNA sequence of the alpha-proteobacterium Sinorhizobium meliloti, the symbiont of alfalfa. The tripartite 6.7-megabase (Mb) genome comprises a 3.65-Mb chromosome, and 1.35-Mb pSymA and 1.68-Mb pSymB megaplasmids. Genome sequence analysis indicates that all three elements contribute, in varying degrees, to symbiosis and reveals how this genome may have emerged during evolution. The genome sequence will be useful in understanding the dynamics of interkingdom associations and of life in soil environments.

Published
2001
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42. A plant plasma membrane ATP binding cassette-type transporter is involved in antifungal terpenoid secretion.

Author

Jasiński M, Stukkens Y, Degand H, Purnelle B, Marchand-Brynaert J, and Boutry M

Subjects
Amino Acid Sequence, Biological Transport, Active, Cell Compartmentation, Cloning, Molecular, Gene Expression Regulation, Plant, Molecular Sequence Data, Plant Leaves metabolism, Plant Proteins genetics, Plants, Toxic, Sequence Analysis, DNA, Nicotiana genetics, Nicotiana metabolism, Antifungal Agents metabolism, Cell Membrane metabolism, Diterpenes metabolism, Plant Proteins metabolism
Abstract

ATP binding cassette (ABC) transporters, which are found in all species, are known mainly for their ability to confer drug resistance. To date, most of the ABC transporters characterized in plants have been localized in the vacuolar membrane and are considered to be involved in the intracellular sequestration of cytotoxins. Working on the assumption that certain ABC transporters might be involved in defense metabolite secretion and their expression might be regulated by the concentration of these metabolites, we treated a Nicotiana plumbaginifolia cell culture with sclareolide, a close analog of sclareol, an antifungal diterpene produced at the leaf surface of Nicotiana spp; this resulted in the appearance of a 160-kD plasma membrane protein, which was partially sequenced. The corresponding cDNA (NpABC1) was cloned and shown to encode an ABC transporter. In vitro and in situ immunodetection showed NpABC1 to be localized in the plasma membrane. Under normal conditions, expression was found in the leaf epidermis. In cell culture and in leaf tissues, NpABC1 expression was strongly enhanced by sclareolide and sclareol. In parallel with NpABC1 induction, cells acquired the ability to excrete a labeled synthetic sclareolide derivative. These data suggest that NpABC1 is involved in the secretion of a secondary metabolite that plays a role in plant defense.

Published
2001

43. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.

Author

Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blöcker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdomènech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Quétier F, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, Löhnert TH, Nordsiek G, Reichelt J, Scharfe M, Schön O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenwälder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse AC, Alcaraz JP, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes HW, Mayer KF, Kaul S, Town CD, Koo HL, Tallon LJ, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii CY, Shea TP, Creasy TH, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill JE, Feldblyum TV, Preuss D, Lin X, Nierman WC, Salzberg SL, White O, Venter JC, Fraser CM, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, and Tabata S

Subjects
Chromosome Mapping, DNA, Plant, Gene Duplication, Humans, Plant Proteins genetics, Sequence Analysis, DNA, Arabidopsis genetics, Genome, Plant
Abstract

Arabidopsis thaliana is an important model system for plant biologists. In 1996 an international collaboration (the Arabidopsis Genome Initiative) was formed to sequence the whole genome of Arabidopsis and in 1999 the sequence of the first two chromosomes was reported. The sequence of the last three chromosomes and an analysis of the whole genome are reported in this issue. Here we present the sequence of chromosome 3, organized into four sequence segments (contigs). The two largest (13.5 and 9.2 Mb) correspond to the top (long) and the bottom (short) arms of chromosome 3, and the two small contigs are located in the genetically defined centromere. This chromosome encodes 5,220 of the roughly 25,500 predicted protein-coding genes in the genome. About 20% of the predicted proteins have significant homology to proteins in eukaryotic genomes for which the complete sequence is available, pointing to important conserved cellular functions among eukaryotes.

Published
2000
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44. Tobacco VDL gene encodes a plastid DEAD box RNA helicase and is involved in chloroplast differentiation and plant morphogenesis.

Author

Wang Y, Duby G, Purnelle B, and Boutry M

Subjects
Amino Acid Sequence, Base Sequence, Chloroplasts, Cloning, Molecular, DEAD-box RNA Helicases, DNA Primers, Molecular Sequence Data, Morphogenesis, Mutation, Phenotype, RNA Helicases chemistry, RNA, Messenger genetics, RNA, Messenger metabolism, Sequence Homology, Amino Acid, Nicotiana cytology, Nicotiana growth & development, Nicotiana metabolism, Cell Differentiation, Plant Proteins, Plants, Toxic, Plastids enzymology, RNA Helicases genetics, Nicotiana genetics
Abstract

The recessive nuclear vdl (for variegated and distorted leaf) mutant of tobacco was obtained by T-DNA insertion and characterized by variegated leaves and abnormal roots and flowers. Affected leaf tissues were white and distorted, lacked palisadic cells, and contained undifferentiated plastids. The variegation was due to phenotypic, rather than genetic, instability. Genomic and cDNA clones were obtained for both the mutant and wild-type VDL alleles. Three transcripts, resulting from alternate intron splicing or polyadenylation, were found for the wild type. The transcripts potentially encode a set of proteins (53, 19, and 15 kD) sharing the same N-terminal region that contains a chloroplast transit peptide capable of importing the green fluorescent protein into chloroplasts. The predicted 53-kD product belongs to the DEAD box RNA helicase family. In the homozygous vdl mutant, T-DNA insertion resulted in accumulation of the shortest transcript and the absence of the RNA helicase-encoding transcript. Genetic transformation of the homozygous mutant by the 53-kD product-encoding cDNA fully restored the wild-type phenotype. These data suggest that a plastid RNA helicase controls early plastid differentiation and plant morphogenesis.

Published
2000
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45. Sequence analysis of three Bacillus cereus loci carrying PIcR-regulated genes encoding degradative enzymes and enterotoxin.

Author

Økstad OA, Gominet M, Purnelle B, Rose M, Lereclus D, and Kolstø AB

Subjects
Amino Acid Sequence, Bacillus cereus chemistry, Bacillus cereus enzymology, Bacterial Proteins, Base Sequence, Hemolysin Proteins, Hydrolases genetics, Molecular Sequence Data, Phosphatidylinositol Diacylglycerol-Lyase, Phosphoinositide Phospholipase C, Promoter Regions, Genetic, Sequence Alignment, Trans-Activators genetics, Transferases (Other Substituted Phosphate Groups) genetics, Type C Phospholipases genetics, Bacillus cereus genetics, Endopeptidases genetics, Enterotoxins genetics, Gene Expression Regulation, Bacterial, Genes, Regulator genetics
Abstract

PIcR is a pleiotropic regulator of extracellular virulence factors in the opportunistic human pathogen Bacillus cereus and the entomopathogenic Bacillus thuringiensis, and is induced in cells entering stationary phase. Among the genes regulated by PIcR are: pIcA, encoding phosphatidylinositol-specific phospholipase C (PI-PLC); plc, encoding phosphatidylcholine-preferring phospholipase C (PC-PLC); nhe, encoding the non-haemolytic enterotoxin; hbl, encoding haemolytic enterotoxin BL (HBL); and genes specifying a putative S-layer like surface protein and a putative extracellular RNase. By analysing 37.1 kb of DNA sequence surrounding hbl, plcA and plcR, 28 ORFs were predicted. Three novel genes putatively regulated by PlcR and encoding a neutral protease (NprB), a subtilase family serine protease (Sfp) and a putative cell-wall hydrolase (Cwh) were identified. The corresponding sfp and cwh genes were located in the immediate upstream region of plcA and could both be regulated by a putative PlcR-binding site positioned between the inversely transcribed genes. Similarly, nprB was positioned directly upstream and transcribed in the opposite orientation to plcR. Genes surrounding plcA, plcR and hblCDAB that were lacking an upstream PlcR regulatory sequence did not appear to serve functions apparently related to PlcR and did not exhibit a conserved organization in Bacillus subtilis.

Published
1999
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46. A 23911 bp region of the Bacillus subtilis genome comprising genes located upstream and downstream of the lev operon.

Author

Parro V, San Román M, Galindo I, Purnelle B, Bolotin A, Sorokin A, and Mellado RP

Subjects
Genomic Library, Glycoside Hydrolases genetics, Molecular Sequence Data, Open Reading Frames, Operon, Restriction Mapping, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Terminator Regions, Genetic, Transcription, Genetic, Bacillus subtilis genetics, Bacterial Proteins genetics, Genes, Bacterial, Genome, Bacterial
Abstract

Within the framework of the European project to sequence the whole Bacillus subtilis 168 genome, a 23911 bp long chromosomal DNA fragment located around 233 degrees on the B. subtilis genetic map was cloned and sequenced. From the generated sequencing data and the results of the homology search, the primary structure of this region was determined. In addition to the whole lev operon, the region contains putative genes for an amino acid permease, two different alcohol dehydrogenases, a chitosanase, a protein belonging to the LysR family of transcriptional regulators, a protein related to the MerR transcriptional regulator, up to four proteins related to the product of the spoF gene, and genes coding for nine more inferred proteins of unknown function.

Published
1997
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47. The sequence of 32b on the left arm of yeast chromosome XII reveals six known genes, a new member of the seripauperins family and a new ABS transporter homologous to the human multidrug resistance protein.

Author

Purnelle B and Goffeau A

Subjects
ATP-Binding Cassette Transporters genetics, Chromosome Mapping, Cosmids, Drug Resistance, Multiple genetics, Genomic Library, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Sequence Analysis, DNA, Sequence Homology, Chromosomes, Fungal genetics, Genes, Fungal genetics, Saccharomyces cerevisiae genetics
Abstract

The analysis of a 32 kb DNA fragment from cosmid 2G12 on the left arm of chromosome XII identifies 14 open reading frames (ORFs) numbered L0948 to L1325, a new tRNA for proline, a delta remnant and two putative ARS. Six ORFs have been previously identified: HSP104, SSA2, SPA2, KNS1, DPS1/APS and SDC25. Three putative ORFs have significant homology with known proteins: L0968 is a new member of the very large 'seripauperins' family, comprising at least 20 yeast members; L1313 is a new ABC transporter highly homologous to the yeast cadmium resistance protein Ycf1p and to the human multidrug resistance protein hMRP1; the C-terminal part of L1325 present in our sequence is very homologous to the fruit fly abdominal segment formation protein Pumilio. Finally, two ORFs, L1201 and L1205, have weak homology with two yeast hypothetical proteins of unknown function identified by the yeast systematic sequencing genome. Since our nucleotide sequence overlaps by 11.6 kb the cosmid 2B18 sequenced by Miosga and Zimmerman (1996) on the right end, we have not reported here the analysis of the ORFs L1313, L1321 and L1325.

Published
1997
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48. An 18.3 kb DNA fragment from yeast chromosome VII carries four unknown open reading frames, the gene for an Asn synthase, remnants of Ty and three tRNA genes.

Author

Van Dyck L, Tettelin H, Purnelle B, and Goffeau A

Subjects
Carrier Proteins genetics, Chromosome Mapping, Cosmids, Fungal Proteins genetics, Lyases genetics, Mitochondrial Proteins, Molecular Sequence Data, Open Reading Frames, Plant Proteins genetics, Polymerase Chain Reaction, Ribosomal Proteins genetics, Sequence Analysis, DNA, Arabidopsis Proteins, Chromosomes, Fungal genetics, Genes, Fungal genetics, Phosphorus-Oxygen Lyases, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins, Transcription Factors
Abstract

An 18.3 kb DNA segment from yeast Saccharomyces cerevisiae VII encompasses the previously characterized MEP1, NUP57 and PPT1 genes as well as seven new open reading frames (ORFs) of at least 100 residues. G6358 is an ubiquitous glutamine-dependent asparagine synthase. G6362 is membrane protein highly homologous to a protein of unknown function in the yeast Schizosaccharomyces pombe. Three ORFs (G6324, G6335 and G6365) have no significant homology with previously reported proteins of characteristic motifs. G6321 and G6359, enclosed in longer ORFs, are not likely to be coding. The segment also contains tRNA genes for Asn, Arg and Ile as well as sigma element and two solo deltas. ORFs and genetic elements are named according to a preliminary working nomenclature.

Published
1997
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49. The sequence of 55 kb on the left arm of yeast chromosome XVI identifies a small nuclear RNA, a new putative protein kinase and two new putative regulators.

Author

Purnelle B, Coster F, and Goffeau A

Subjects
Amino Acid Sequence, Genes, Fungal, Genes, Regulator, Molecular Sequence Data, Open Reading Frames, Protein Kinases genetics, RNA, Small Nuclear, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Chromosomes, Fungal genetics, DNA, Fungal genetics, Saccharomyces cerevisiae genetics
Abstract

We have sequenced and analysed a 55786 bp fragment located on the left arm of chromosome XVI of Saccharomyces cerevisiae. The sequence contains 29 non-overlapping open reading frames (ORFs) longer than 300 bp, among which 12 genes have previously been sequenced: OYE3, REV3, SVS1, BEM4, CDC60, KIP2, PEP4, SPK1, PAL1, KES1, SNR17B and RPL37A. Three new ORFs, P2591, P2594 and P2597 are highly homologous to the human phosphotyrosyl phosphatase activator PTPA, to the pleiotropic regulator PRL1 of PP1 and PP2a protein phosphatases in plants and to the protein kinase PAR-1 in Caenorhabditis elegans, respectively. Three other ORFs, P2545, P2567 and P2578 have significant homology with ORFs of unknown function located on yeast chromosomes VIII, XVI and IV respectively.

Published
1996
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50. Nucleotide sequence analysis of a 40 kb segment on the right arm of yeast chromosome XV reveals 18 open reading frames including a new pyruvate kinase and three homologues to chromosome I genes.

Author

Purnelle B and Goffeau A

Subjects
Amino Acid Sequence, Genes, Fungal, Molecular Sequence Data, Open Reading Frames, Pyruvate Kinase genetics, RNA, Transfer genetics, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Chromosomes, Fungal genetics, DNA, Fungal genetics, Saccharomyces cerevisiae genetics
Abstract

We have determined the nucleotide sequence of a 40 kb fragment from the right arm of chromosome XV of Saccharomyces cerevisiae. Subsequent analysis revealed 18 non-overlapping open reading frames (ORFs) numbered from 06257 to 06357, an ARS, two tRNA genes and a Ty2 with its flanking elements. Ten ORFs have been sequenced previously: TEA1, RPA43, RPA190, SGC1 (also called TYE7) REV1, PUT4, CIN1, MNE and MRE4 (also called MEK1). Among the others, two seem to code for a new pyruvate kinase and for a new ubiquitin-conjugating enzyme; three have interesting homology with genes located on the left arm of chromosome I. This similarity with chromosome I extends to the left of the sequence presented here (Parle et al., submitted to Yeast). The homologous genes on the two chromosomes are placed in the same relative order.

Published
1996
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