43 results on '"Priyam Patel"'
Search Results
2. Sodium oligomannate alters gut microbiota, reduces cerebral amyloidosis and reactive microglia in a sex-specific manner
- Author
-
Megan E. Bosch, Hemraj B. Dodiya, Julia Michalkiewicz, Choonghee Lee, Shabana M. Shaik, Ian Q. Weigle, Can Zhang, Jack Osborn, Aishwarya Nambiar, Priyam Patel, Samira Parhizkar, Xiaoqiong Zhang, Marie L. Laury, Prasenjit Mondal, Ashley Gomm, Matthew John Schipma, Dania Mallah, Oleg Butovsky, Eugene B. Chang, Rudolph E. Tanzi, Jack A. Gilbert, David M. Holtzman, and Sangram S. Sisodia
- Subjects
Alzheimer’s disease ,Microbiome ,Sodium oligomannate ,Microglia ,Neuroinflammation ,Neurology. Diseases of the nervous system ,RC346-429 ,Geriatrics ,RC952-954.6 - Abstract
Abstract It has recently become well-established that there is a connection between Alzheimer’s disease pathology and gut microbiome dysbiosis. We have previously demonstrated that antibiotic-mediated gut microbiota perturbations lead to attenuation of Aβ deposition, phosphorylated tau accumulation, and disease-associated glial cell phenotypes in a sex-dependent manner. In this regard, we were intrigued by the finding that a marine-derived oligosaccharide, GV-971, was reported to alter gut microbiota and reduce Aβ amyloidosis in the 5XFAD mouse model that were treated at a point when Aβ burden was near plateau levels. Utilizing comparable methodologies, but with distinct technical and temporal features, we now report on the impact of GV-971 on gut microbiota, Aβ amyloidosis and microglial phenotypes in the APPPS1-21 model, studies performed at the University of Chicago, and independently in the 5X FAD model, studies performed at Washington University, St. Louis. Methods To comprehensively characterize the effects of GV-971 on the microbiota-microglia-amyloid axis, we conducted two separate investigations at independent institutions. There was no coordination of the experimental design or execution between the two laboratories. Indeed, the two laboratories were not aware of each other’s experiments until the studies were completed. Male and female APPPS1-21 mice were treated daily with 40, 80, or 160 mg/kg of GV-971 from 8, when Aβ burden was detectable upto 12 weeks of age when Aβ burden was near maximal levels. In parallel, and to corroborate existing published studies and further investigate sex-related differences, male and female 5XFAD mice were treated daily with 100 mg/kg of GV-971 from 7 to 9 months of age when Aβ burden was near peak levels. Subsequently, the two laboratories independently assessed amyloid-β deposition, metagenomic, and neuroinflammatory profiles. Finally, studies were initiated at the University of Chicago to evaluate the metabolites in cecal tissue from vehicle and GV-971-treated 5XFAD mice. Results These studies showed that independent of the procedural differences (dosage, timing and duration of treatment) between the two laboratories, cerebral amyloidosis was reduced primarily in male mice, independent of strain. We also observed sex-specific microbiota differences following GV-971 treatment. Interestingly, GV-971 significantly altered multiple overlapping bacterial species at both institutions. Moreover, we discovered that GV-971 significantly impacted microbiome metabolism, particularly by elevating amino acid production and influencing the tryptophan pathway. The metagenomics and metabolomics changes correspond with notable reductions in peripheral pro-inflammatory cytokine and chemokine profiles. Furthermore, GV-971 treatment dampened astrocyte and microglia activation, significantly decreasing plaque-associated reactive microglia while concurrently increasing homeostatic microglia only in male mice. Bulk RNAseq analysis unveiled sex-specific changes in cerebral cortex transcriptome profiles, but most importantly, the transcriptome changes in the GV-971-treated male group revealed the involvement of microglia and inflammatory responses. Conclusions In conclusion, these studies demonstrate the connection between the gut microbiome, neuroinflammation, and Alzheimer’s disease pathology while highlighting the potential therapeutic effect of GV-971. GV-971 targets the microbiota-microglia-amyloid axis, leading to the lowering of plaque pathology and neuroinflammatory signatures in a sex-dependent manner when given at the onset of Aβ deposition or when given after Aβ deposition is already at higher levels.
- Published
- 2024
- Full Text
- View/download PDF
3. Early modulation of the gut microbiome by female sex hormones alters amyloid pathology and microglial function
- Author
-
Piyali Saha, Ian Q. Weigle, Nicholas Slimmon, Pedro Blauth Poli, Priyam Patel, Xiaoqiong Zhang, Yajun Cao, Julia Michalkiewicz, Ashley Gomm, Can Zhang, Rudolph E. Tanzi, Nicholas Dylla, Ayman Al-Hendy, and Sangram S. Sisodia
- Subjects
Medicine ,Science - Abstract
Abstract It is well-established that women are disproportionately affected by Alzheimer’s disease. The mechanisms underlying this sex-specific disparity are not fully understood, but several factors that are often associated-including interactions of sex hormones, genetic factors, and the gut microbiome-likely contribute to the disease's etiology. Here, we have examined the role of sex hormones and the gut microbiome in mediating Aβ amyloidosis and neuroinflammation in APPPS1-21 mice. We report that postnatal gut microbiome perturbation in female APPPS1-21 mice leads to an elevation in levels of circulating estradiol. Early stage ovariectomy (OVX) leads to a reduction of plasma estradiol that is correlated with a significant alteration of gut microbiome composition and reduction in Aβ pathology. On the other hand, supplementation of OVX-treated animals with estradiol restores Aβ burden and influences gut microbiome composition. The reduction of Aβ pathology with OVX is paralleled by diminished levels of plaque-associated microglia that acquire a neurodegenerative phenotype (MGnD-type) while estradiol supplementation of OVX-treated animals leads to a restoration of activated microglia around plaques. In summary, our investigation elucidates the complex interplay between sex-specific hormonal modulations, gut microbiome dynamics, metabolic perturbations, and microglial functionality in the pathogenesis of Alzheimer's disease.
- Published
- 2024
- Full Text
- View/download PDF
4. Lactate-dependent transcriptional regulation controls mammalian eye morphogenesis
- Author
-
Nozomu Takata, Jason M. Miska, Marc A. Morgan, Priyam Patel, Leah K. Billingham, Neha Joshi, Matthew J. Schipma, Zachary J. Dumar, Nikita R. Joshi, Alexander V. Misharin, Ryan B. Embry, Luciano Fiore, Peng Gao, Lauren P. Diebold, Gregory S. McElroy, Ali Shilatifard, Navdeep S. Chandel, and Guillermo Oliver
- Subjects
Science - Abstract
Abstract Mammalian retinal metabolism favors aerobic glycolysis. However, the role of glycolytic metabolism in retinal morphogenesis remains unknown. We report that aerobic glycolysis is necessary for the early stages of retinal development. Taking advantage of an unbiased approach that combines the use of eye organoids and single-cell RNA sequencing, we identify specific glucose transporters and glycolytic genes in retinal progenitors. Next, we determine that the optic vesicle territory of mouse embryos displays elevated levels of glycolytic activity. At the functional level, we show that removal of Glucose transporter 1 and Lactate dehydrogenase A gene activity from developing retinal progenitors arrests eye morphogenesis. Surprisingly, we uncover that lactate-mediated upregulation of key eye-field transcription factors is controlled by the epigenetic modification of histone H3 acetylation through histone deacetylase activity. Our results identify an unexpected bioenergetic independent role of lactate as a signaling molecule necessary for mammalian eye morphogenesis.
- Published
- 2023
- Full Text
- View/download PDF
5. A tumor suppressor role for EZH2 in diffuse midline glioma pathogenesis
- Author
-
Swati Dhar, Samantha Gadd, Priyam Patel, Jake Vaynshteyn, G. Praveen Raju, Rintaro Hashizume, Daniel J. Brat, and Oren J. Becher
- Subjects
Ezh2 loss-of-function ,Ezh2 gain-of-function ,Diffuse midline gliomas (DMGs) ,Tumor suppressor ,Interferon gamma ,Oxidative phosphorylation ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Pediatric high-grade gliomas, specifically diffuse midline gliomas, account for only 20% of clinical cases but are 100% fatal. A majority of the DMG cases are characterized by the signature K27M mutation in histone H3. The H3K27M mutation opposes the function of enhancer of zeste homolog 2 (EZH2), the methyltransferase enzyme of the polycomb repressor complex 2. However, the role of EZH2 in DMG pathogenesis is unclear. In this study, we demonstrate a tumor suppressor function for EZH2 using Ezh2 loss- and gain-of-function studies in H3WT DMG mouse models. Genetic ablation of Ezh2 increased cell proliferation and tumor grade while expression of an Ezh2 gain-of-function mutation significantly reduced tumor incidence and increased tumor latency. Transcriptomic analysis revealed that Ezh2 deletion upregulates an inflammatory response with upregulation of immunoproteasome genes such as Psmb8, Psmb9, and Psmb10. Ezh2 gain-of-function resulted in enrichment of the oxidative phosphorylation/mitochondrial metabolic pathway namely the isocitrate dehydrogenase Idh1/2/3 genes. Pharmacological inhibition of EZH2 augmented neural progenitor cell proliferation, supporting the tumor suppressive role of EZH2. In vivo 7-day treatment of H3K27M DMG tumor bearing mice with an EZH2 inhibitor, Tazemetostat, did not alter proliferation or significantly impact survival. Together our results suggest that EZH2 has a tumor suppressor function in DMG and warrants caution in clinical translation of EZH2 inhibitors to treat patients with DMG.
- Published
- 2022
- Full Text
- View/download PDF
6. Machine learning-assisted elucidation of CD81–CD44 interactions in promoting cancer stemness and extracellular vesicle integrity
- Author
-
Erika K Ramos, Chia-Feng Tsai, Yuzhi Jia, Yue Cao, Megan Manu, Rokana Taftaf, Andrew D Hoffmann, Lamiaa El-Shennawy, Marina A Gritsenko, Valery Adorno-Cruz, Emma J Schuster, David Scholten, Dhwani Patel, Xia Liu, Priyam Patel, Brian Wray, Youbin Zhang, Shanshan Zhang, Ronald J Moore, Jeremy V Mathews, Matthew J Schipma, Tao Liu, Valerie L Tokars, Massimo Cristofanilli, Tujin Shi, Yang Shen, Nurmaa K Dashzeveg, and Huiping Liu
- Subjects
breast cancer metastasis ,CD81 ,tumor clusters ,machine learning ,protein interactions ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Tumor-initiating cells with reprogramming plasticity or stem-progenitor cell properties (stemness) are thought to be essential for cancer development and metastatic regeneration in many cancers; however, elucidation of the underlying molecular network and pathways remains demanding. Combining machine learning and experimental investigation, here we report CD81, a tetraspanin transmembrane protein known to be enriched in extracellular vesicles (EVs), as a newly identified driver of breast cancer stemness and metastasis. Using protein structure modeling and interface prediction-guided mutagenesis, we demonstrate that membrane CD81 interacts with CD44 through their extracellular regions in promoting tumor cell cluster formation and lung metastasis of triple negative breast cancer (TNBC) in human and mouse models. In-depth global and phosphoproteomic analyses of tumor cells deficient with CD81 or CD44 unveils endocytosis-related pathway alterations, leading to further identification of a quality-keeping role of CD44 and CD81 in EV secretion as well as in EV-associated stemness-promoting function. CD81 is coexpressed along with CD44 in human circulating tumor cells (CTCs) and enriched in clustered CTCs that promote cancer stemness and metastasis, supporting the clinical significance of CD81 in association with patient outcomes. Our study highlights machine learning as a powerful tool in facilitating the molecular understanding of new molecular targets in regulating stemness and metastasis of TNBC.
- Published
- 2022
- Full Text
- View/download PDF
7. A dynamic thermoregulatory material inspired by squid skin
- Author
-
Erica M. Leung, Melvin Colorado Escobar, George T. Stiubianu, Steven R. Jim, Alexandra L. Vyatskikh, Zhijing Feng, Nicholas Garner, Priyam Patel, Kyle L. Naughton, Maurizio Follador, Emil Karshalev, Matthew D. Trexler, and Alon A. Gorodetsky
- Subjects
Science - Abstract
Thermoregulatory platforms that combine the advantages of passive and active thermal management systems have remained elusive. Here, the authors draw inspiration from the static infrared-reflecting space blanket and dynamic color-changing squid skin to develop a composite material that addresses this challenge.
- Published
- 2019
- Full Text
- View/download PDF
8. Proton conduction in inkjet-printed reflectin films
- Author
-
Yujia Lu, Preeta Pratakshya, Atrouli Chatterjee, Xiaoteng Jia, David D. Ordinario, Long Phan, Juana A. Cerna Sanchez, Rylan Kautz, Vivek Tyagi, Priyam Patel, Yegor Van Dyke, MyAnh K. Dao, Justin P. Kerr, James Long, Alex Allevato, Jessica Leal-Cruz, Eric Tseng, Ethan R. Peng, Andrew Reuter, Justin Couvrette, Samantha Drake, Fiorenzo G. Omenetto, and Alon A. Gorodetsky
- Subjects
Biotechnology ,TP248.13-248.65 ,Physics ,QC1-999 - Abstract
Biomolecular proton conducting materials have been touted as promising for seamlessly and directly interfacing natural biological systems with traditional artificial electronics. As such, proton conduction has been explored for a variety of protein- and polypeptide-based materials. Within this context, cephalopod structural proteins called reflectins have demonstrated several favorable properties, including outstanding electrical figures of merit as proton conductors and intrinsic biocompatibility with cellular systems. However, the processing of reflectins into films has typically used low-throughput material-intensive strategies and has often required organic solvents. Herein, we report the preparation of devices from active layers fabricated via inkjet printing of reflectin solubilized in water and the systematic evaluation of their electrical performance. Taken together, our findings represent a step forward in the manufacturing and development of unconventional bioelectronic platforms from the reflectin family of proteins.
- Published
- 2020
- Full Text
- View/download PDF
9. Mutation-based structural modification and dynamics study of amyloid beta peptide (1–42): An in-silico-based analysis to cognize the mechanism of aggregation
- Author
-
Pritam Kumar Panda, Abhaysinha Satish Patil, Priyam Patel, and Hetalkumar Panchal, Dr.
- Subjects
Genetics ,QH426-470 - Abstract
Alzheimer's disease is the prevalent cause of premature senility, a progressive mental disorder due to degeneration in brain and deposition of amyloid β peptide (1–42, a misfolded protein) in the form of aggregation that prevails for a prolonged time and obstructs every aspect of life. One of the primary hallmarks of the neuropathological disease is the accretion of amyloid β peptide in the brain that leads to Alzheimer's disease, but the mechanism is still a mystery. Several investigations have shown that mutations at specific positions have a significant impact in stability of the peptide as predicted from aggregation profiles. Here in our study, we have analyzed the mutations by substituting residues at position A22G, E22G, E22K, E22Q, D23N, L34V and molecular dynamics have been performed to check the deviation in stability and conformation of the peptide. The results validated that the mutations at specific positions lead to instability and the proline substitution at E22P and L34P stalled the aggregation of the peptide. Keywords: Amyloid β peptide, Alzheimer's disease, Aggregation, Mutational analysis, NAMD, UCSF Chimera, Discovery Studio Visualizer
- Published
- 2016
- Full Text
- View/download PDF
10. On the effectiveness of random testing for Android: or how i learned to stop worrying and love the monkey.
- Author
-
Priyam Patel, Gokul Srinivasan, Sydur Rahaman, and Iulian Neamtiu
- Published
- 2018
- Full Text
- View/download PDF
11. Abstract P3-13-03: Heterozygous BRCA1 mutation influences alternative splicing in human benign mammary organoids
- Author
-
Oukseub Lee, Mi-Ran Choi, Gannon Cottone, Priyam Patel, Susan E Clare, and Seema A. Khan
- Subjects
Cancer Research ,Oncology - Abstract
Background: Women carrying a germline BRCA1 mutation, have 60% risk of developing breast cancer during their lifetime and frequently develop triple-negative, basal-like, aggressive breast tumors. Humans produce around 150,000 different proteins from their 25,000-30,000 genes. This is accomplished by alternative splicing (AS). We hypothesized that AS in BRCA1 mutation carriers is different from those women with wild type BRCA1, therefore, we examined AS, expression of genes encoding splicing factors, and enrichment of binding motifs for RNA-binding proteins in BRCA1 carriers (BRCA1mut/+) and controls (BRCA1 normal). Methods: Prophylactic mastectomy (BRCA1mut/+) and reduction mammoplasty (BRCA1 normal) specimens were collected at Prentice Women’s Hospital of Northwestern Medicine under approval by Northwestern’s Institutional Review Board (NU15B07). We isolated organoids from these tissues, and cryopreserved them for future use. We selected organoids of premenopausal women, age-matched (28-46) without oral contraceptive usage within 3 years: BRCA1mut/+ (n=12) and BRCA1 normal (n=4). Organoids were maintained in complete MammoCult medium in ultra-low attachment plates at 37 °C, 5% CO2 for 72 hrs, and harvested for RNA extraction (NucleoSpin RNA Plus, TaKaRa). 100 ng of total RNA (RIN 7+) were used for RNA sequencing assay with the KAPA mRNA Hyper Prep Kit (Roche Corporate) and NovaSeq 6000 for 100b paired-end sequencing (Illumina, Inc). The preprocessed reads were aligned to the human genome (hg38) using STAR. Differential expression analysis (DESeq2, nominal p-value < 0.05) and pathway analysis (GSEA, size ≥30, NES >2, FDR q-value Citation Format: Oukseub Lee, Mi-Ran Choi, Gannon Cottone, Priyam Patel, Susan E Clare, Seema A. Khan. Heterozygous BRCA1 mutation influences alternative splicing in human benign mammary organoids [abstract]. In: Proceedings of the 2021 San Antonio Breast Cancer Symposium; 2021 Dec 7-10; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2022;82(4 Suppl):Abstract nr P3-13-03.
- Published
- 2022
- Full Text
- View/download PDF
12. Selective progesterone receptor blockade prevents BRCA1-associated mouse mammary tumors through modulation of epithelial and stromal genes
- Author
-
Xiaoling Xuei, J. Julie Kim, Minhua Wang, Oukseub Lee, Susan E. Clare, Seema A. Khan, Priyam Patel, Omid Hosseini, Matthew J. Schipma, Maarten C. Bosland, Irene Helenowski, and Ali Shidfar
- Subjects
Cancer Research ,Norpregnadienes ,Stromal cell ,Carcinogenesis ,Breast Neoplasms ,Inflammation ,medicine.disease_cause ,Mice ,chemistry.chemical_compound ,Mammary Glands, Animal ,Ulipristal acetate ,Progesterone receptor ,Conditional gene knockout ,Tumor Microenvironment ,medicine ,Animals ,Humans ,Mastectomy ,Telapristone Acetate ,BRCA1 Protein ,business.industry ,Epithelial Cells ,Mifepristone ,Disease Models, Animal ,Oncology ,chemistry ,Cancer research ,Female ,Stromal Cells ,medicine.symptom ,Receptors, Progesterone ,business ,medicine.drug - Abstract
Pharmacological approaches to breast cancer risk-reduction for BRCA1 mutation carriers would provide an alternative to mastectomy. BRCA1-deficiency dysregulates progesterone signaling, promoting tumorigenesis. Selective progesterone receptor (PR) modulators (SPRMs) are therefore candidate prevention agents. However, their efficacy varies in different BRCA1-deficient mouse models. We examined chemopreventive efficacy of telapristone acetate (TPA), ulipristal acetate (UPA) and mifepristone (MFP) in mice with a conditional knockout of the Brca1 C-terminal domain. The SPRMs displayed a spectrum of efficacy: UPA was most effective, TPA less, and MFP ineffective. Compared to no-treatment controls, UPA reduced tumorigenesis (p = 0.04), and increased tumor latency (p = 0.03). In benign mammary glands, UPA decreased Ki67 (p 0.001) and increased PR expression (p 0.0001). RNA sequencing analysis revealed distinct gene expression in response to UPA and MFP. UPA downregulated glycolysis and extracellular matrix-inflammation genes (Fn1, Ptgs2, Tgfb2, Tgfb3) whereas MFP downregulated claudin genes and upregulated amino acid metabolism and inflammation genes. The anti-glucocorticoid effects of MFP appeared not to be tumor-protective, while altering estrogen receptor signaling and NF-kB activation. Our study points to an important role of epithelial PR and its paracrine action on the microenvironment in BRCA1-deficient mammary tumorigenesis, and prevention.
- Published
- 2021
- Full Text
- View/download PDF
13. Author response: Machine learning-assisted elucidation of CD81–CD44 interactions in promoting cancer stemness and extracellular vesicle integrity
- Author
-
Erika K Ramos, Chia-Feng Tsai, Yuzhi Jia, Yue Cao, Megan Manu, Rokana Taftaf, Andrew D Hoffmann, Lamiaa El-Shennawy, Marina A Gritsenko, Valery Adorno-Cruz, Emma J Schuster, David Scholten, Dhwani Patel, Xia Liu, Priyam Patel, Brian Wray, Youbin Zhang, Shanshan Zhang, Ronald J Moore, Jeremy V Mathews, Matthew J Schipma, Tao Liu, Valerie L Tokars, Massimo Cristofanilli, Tujin Shi, Yang Shen, Nurmaa K Dashzeveg, and Huiping Liu
- Published
- 2022
- Full Text
- View/download PDF
14. Author Reply to Peer Reviews of Machine learning-assisted elucidation of CD81-CD44 interactions in promoting cancer stemness and extracellular vesicle integrity
- Author
-
Erika K Ramos, Chia-Feng Tsai, Yuzhi Jia, Yue Cao, Megan Manu, Rokana Taftaf, Andrew D Hoffmann, Lamiaa El-Shennawy, Marina Gritsenko, Valery Adorno-Cruz, Emma J Schuster, David Scholten, Dhwani Patel, Xia Liu, Priyam Patel, Brian Wray, Youbin Zhang, Shanshan Zhang, Ronald Moore, Jeremy V Mathews, Matthew Schipma, Tao Liu, Valerie L. Tokars, Massimo Cristofanilli, Tujin Shi, Yang Shen, Nurmaa K. Dashzeveg, and Huiping Liu
- Published
- 2022
- Full Text
- View/download PDF
15. Trends and Geographic Patterns in Drug and Synthetic Opioid Overdose Deaths — United States, 2013–2019
- Author
-
Christine L. Mattson, Lauren J. Tanz, Mbabazi Kariisa, Nicole L. Davis, Priyam Patel, and Kelly Quinn
- Subjects
medicine.medical_specialty ,Health (social science) ,Epidemiology ,Synthetic Drugs ,Health, Toxicology and Mutagenesis ,Population ,Drug overdose ,01 natural sciences ,Fentanyl ,Heroin ,03 medical and health sciences ,0302 clinical medicine ,Health Information Management ,medicine ,Humans ,030212 general & internal medicine ,Full Report ,0101 mathematics ,Mortality ,education ,education.field_of_study ,Geography ,business.industry ,Mortality rate ,010102 general mathematics ,General Medicine ,medicine.disease ,United States ,Substance abuse ,Analgesics, Opioid ,Polysubstance dependence ,Emergency medicine ,Drug Overdose ,business ,medicine.drug ,Methadone - Abstract
Deaths involving synthetic opioids other than methadone (synthetic opioids), which largely consist of illicitly manufactured fentanyl; psychostimulants with abuse potential (e.g., methamphetamine); and cocaine have increased in recent years, particularly since 2013 (1,2). In 2019, a total of 70,630 drug overdose deaths occurred, corresponding to an age-adjusted rate of 21.6 per 100,000 population and a 4.3% increase from the 2018 rate (20.7) (3). CDC analyzed trends in age-adjusted overdose death rates involving synthetic opioids, psychostimulants, cocaine, heroin, and prescription opioids during 2013-2019, as well as geographic patterns in synthetic opioid- and psychostimulant-involved deaths during 2018-2019. From 2013 to 2019, the synthetic opioid-involved death rate increased 1,040%, from 1.0 to 11.4 per 100,000 age-adjusted (3,105 to 36,359). The psychostimulant-involved death rate increased 317%, from 1.2 (3,627) in 2013 to 5.0 (16,167) in 2019. In the presence of synthetic opioid coinvolvement, death rates for prescription opioids, heroin, psychostimulants, and cocaine increased. In the absence of synthetic opioid coinvolvement, death rates increased only for psychostimulants and cocaine. From 2018 to 2019, the largest relative increase in the synthetic opioid-involved death rate occurred in the West (67.9%), and the largest relative increase in the psychostimulant-involved death rate occurred in the Northeast (43.8%); these increases represent important changes in the geographic distribution of drug overdose deaths. Evidence-based prevention and response strategies including substance use disorder treatment and overdose prevention and response efforts focused on polysubstance use must be adapted to address the evolving drug overdose epidemic.
- Published
- 2021
16. Effective virtual and residual properties of some arithmetic hyperbolic 3–manifolds
- Author
-
Jason DeBlois, Priyam Patel, and Nicholas Miller
- Subjects
Geodesic ,Applied Mathematics ,General Mathematics ,010102 general mathematics ,Residual ,01 natural sciences ,Upper and lower bounds ,Commensurability (mathematics) ,Manifold ,Quadratic form ,Mathematics::Differential Geometry ,0101 mathematics ,Index of a subgroup ,Arithmetic ,Reflection group ,Mathematics - Abstract
We give an effective upper bound, for certain arithmetic hyperbolic 3-manifold groups obtained from a quadratic form construction, on the minimal index of a subgroup that embeds in a fixed 6-dimensional right-angled reflection group, stabilizing a totally geodesic subspace. In particular, for manifold groups in any fixed commensurability class we show that the index of such a subgroup is asymptotically smaller than any fractional power of the volume of the manifold. We also give effective bounds on the geodesic residual finiteness growths of closed hyperbolic manifolds that totally geodesically immerse in non-compact right-angled reflection orbifolds, extending work of the third author from the compact case. The first result gives examples to which the second applies, and for these we give explicit bounds on geodesic residual finiteness growth.
- Published
- 2020
- Full Text
- View/download PDF
17. Nore1 inhibits age-associated myeloid lineage skewing and clonal hematopoiesis, but facilitates termination of emergency (stress) granulopoiesis
- Author
-
Olatundun Williams, Liping Hu, Weiqi Huang, Priyam Patel, Elizabeth T. Bartom, Ling Bei, Elizabeth Hjort, Christina Hijiya, and Elizabeth A. Eklund
- Subjects
Cell Biology ,Molecular Biology ,Biochemistry - Published
- 2023
- Full Text
- View/download PDF
18. CD81 partners with CD44 in promoting exosome biogenesis, tumor cluster formation, and lung metastasis in triple negative breast cancer
- Author
-
Erika K. Ramos, Chia-Feng Tsai, Nurmaa K. Dashzeveg, Yuzhi Jia, Yue Cao, Megan Manu, Rokana Taftaf, Andrew D. Hoffmann, Lamiaa El-Shennawy, Marina A. Gritsenko, Valery Adorno-Cruz, Emma J. Schuster, David Scholten, Dhwani Patel, Xia Liu, Priyam Patel, Brian Wray, Youbin Zhang, Shanshan Zhang, Ronald J. Moore, Jeremy V. Mathews, Matthew J. Schipma, Tao Liu, Valerie L. Tokars, Massimo Cristofanilli, Tujin Shi, Yang Shen, and Huiping Liu
- Abstract
Tumor-initiating cells with reprogramming plasticity are thought to be essential for cancer development and metastatic regeneration in many cancers; however, the molecular mechanisms are not fully understood. This study reports that CD81, a tetraspanin protein marker of small extracellular vesicles (exosomes), functions as a binding partner of CD44 and facilitates self-renewal of tumor initiating cells. Using machine learning-assisted protein structure modeling, co-immunoprecipitation, and mutagenesis approaches, we further demonstrate that CD81 interacts with CD44 on the cellular membrane through their extracellular regions. In-depth global and phosphoproteomic analyses of clustering tumor cells unveils endocytosis-related signature pathways of proteins and phosphorylation patterns regulated by CD81 and CD44 specifically or shared between two. Notably, CRISPR Cas9-mediated depletion of either CD44 or CD81 results in loss of both proteins in cancer cell-secreted exosomes, a state which abolishes exosome-induced self-renewal of recipient cells for mammosphere formation. CD81 is expressed in >80% of human circulating tumor cells (CTCs) and specifically enriched in clustered CTCs along with CD44 isolated from breast cancer patients. Mimicking the phenotypes of CD44 deficiency, loss of CD81 also inhibits tumor cluster aggregation, tumorigenesis, and lung metastasis of triple negative breast cancer (TNBC), supporting the clinical significance of CD81 in association with patient outcomes. Our study highlights the novel role of CD81 and its partnership with CD44 in cancer exosomes, self-renewal, CTC clustering, and metastasis initiation of TNBC.
- Published
- 2022
- Full Text
- View/download PDF
19. A tumor suppressor role for EZH2 in diffuse midline glioma pathogenesis
- Author
-
Swati Dhar, Samantha Gadd, Priyam Patel, Jake Vaynshteyn, G. Praveen Raju, Rintaro Hashizume, Daniel J. Brat, and Oren J. Becher
- Subjects
Histones ,Cellular and Molecular Neuroscience ,Mice ,Proteasome Endopeptidase Complex ,Brain Neoplasms ,Mutation ,Animals ,Humans ,Enhancer of Zeste Homolog 2 Protein ,macromolecular substances ,Neurology (clinical) ,Glioma ,Pathology and Forensic Medicine - Abstract
Pediatric high-grade gliomas, specifically diffuse midline gliomas, account for only 20% of clinical cases but are 100% fatal. A majority of the DMG cases are characterized by the signature K27M mutation in histone H3. The H3K27M mutation opposes the function of enhancer of zeste homolog 2 (EZH2), the methyltransferase enzyme of the polycomb repressor complex 2. However, the role of EZH2 in DMG pathogenesis is unclear. In this study, we demonstrate a tumor suppressor function for EZH2 using Ezh2 loss- and gain-of-function studies in H3WT DMG mouse models. Genetic ablation of Ezh2 increased cell proliferation and tumor grade while expression of an Ezh2 gain-of-function mutation significantly reduced tumor incidence and increased tumor latency. Transcriptomic analysis revealed that Ezh2 deletion upregulates an inflammatory response with upregulation of immunoproteasome genes such as Psmb8, Psmb9, and Psmb10. Ezh2 gain-of-function resulted in enrichment of the oxidative phosphorylation/mitochondrial metabolic pathway namely the isocitrate dehydrogenase Idh1/2/3 genes. Pharmacological inhibition of EZH2 augmented neural progenitor cell proliferation, supporting the tumor suppressive role of EZH2. In vivo 7-day treatment of H3K27M DMG tumor bearing mice with an EZH2 inhibitor, Tazemetostat, did not alter proliferation or significantly impact survival. Together our results suggest that EZH2 has a tumor suppressor function in DMG and warrants caution in clinical translation of EZH2 inhibitors to treat patients with DMG.
- Published
- 2021
20. A dynamic thermoregulatory material inspired by squid skin
- Author
-
Matthew D. Trexler, Erica M. Leung, Kyle L. Naughton, George Stiubianu, Steven R. Jim, Zhijing Feng, Melvin Colorado Escobar, Nicholas Garner, Maurizio Follador, Alon A. Gorodetsky, Alexandra L. Vyatskikh, Emil Karshalev, and Priyam Patel
- Subjects
0301 basic medicine ,Male ,Hot Temperature ,Computer science ,Energy science and technology ,Science ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,General Physics and Astronomy ,02 engineering and technology ,General Biochemistry, Genetics and Molecular Biology ,Article ,Body Temperature ,Setpoint ,03 medical and health sciences ,biology.animal ,Transmittance ,Figure of merit ,Animals ,Humans ,lcsh:Science ,Mechanical energy ,Electronic circuit ,Squid ,Multidisciplinary ,biology ,business.industry ,Electrical engineering ,Decapodiformes ,Temperature ,General Chemistry ,021001 nanoscience & nanotechnology ,030104 developmental biology ,Heat flux ,Control system ,lcsh:Q ,0210 nano-technology ,business ,Skin Temperature ,Body Temperature Regulation ,Materials for optics - Abstract
Effective thermal management is critical for the operation of many modern technologies, such as electronic circuits, smart clothing, and building environment control systems. By leveraging the static infrared-reflecting design of the space blanket and drawing inspiration from the dynamic color-changing ability of squid skin, we have developed a composite material with tunable thermoregulatory properties. Our material demonstrates an on/off switching ratio of ~25 for the transmittance, regulates a heat flux of ~36 W/m2 with an estimated mechanical power input of ~3 W/m2, and features a dynamic environmental setpoint temperature window of ~8 °C. Moreover, the composite can manage one fourth of the metabolic heat flux expected for a sedentary individual and can also modulate localized changes in a wearer’s body temperature by nearly 10-fold. Due to such functionality and associated figures of merit, our material may substantially reduce building energy consumption upon widespread deployment and adoption., Thermoregulatory platforms that combine the advantages of passive and active thermal management systems have remained elusive. Here, the authors draw inspiration from the static infrared-reflecting space blanket and dynamic color-changing squid skin to develop a composite material that addresses this challenge.
- Published
- 2019
21. Chromatin Reprogramming via Contact Guidance-Induced Nuclear Deformation Promotes Stem Cell Differentiation
- Author
-
Priyam Patel, Reiner Bleher, Nancy Rivera-Bolanos, Chongwen Duan, Vadim Backman, Guillermo A. Ameer, Eric W. Roth, Yue Li, Jane Frederick, Bin Jiang, Surbhi Jain, Vasundhara Agrawal, Xinlong Wang, Panagiotis Ntziachristos, and Ranya Virk
- Subjects
Chemistry ,Cellular differentiation ,Deformation (engineering) ,Macromolecular crowding ,Reprogramming ,Contact guidance ,Chromatin ,Cell biology - Abstract
Efficient manipulation of cell fate is important for regenerative engineering applications. Lineage-specific differentiation of stem cells is particularly challenging due to their inherent plasticity. Engineered topographies may alter cellular plasticity through contact guidance. However, the ability to rationally design topographies to regulate phenotypic outcomes has been hindered in part by the lack of tools to quantify nanoscale chromatin structure reorganization in live cells. Herein we use micropillars, molecular, and nanostructural quantification tools to investigate how nuclear morphology in human mesenchymal stem cells (hMSCs) affects chromatin conformation and osteogenic differentiation. We show that micropillar-induced contact guidance is transduced via the cytoskeleton and impacts nuclear architecture, lamin A/C multimerization, histone modifications, and the 3-D conformation of chromatin within packing domains, a key regulator of transcriptional responsiveness. Micropillars repressed expression of genes associated with developmental processes and enhanced lineage-specific responsiveness, thereby decreasing cell plasticity and off-target differentiation, and facilitating osteogenic differentiation of hMSCs. Altogether, these findings reveal that chromatin reprogramming through contact guidance-induced nuclear deformation can be an efficient way to manipulate cell fate.
- Published
- 2021
- Full Text
- View/download PDF
22. Comparison of Machine Learning Algorithms for Tumor Detection in Breast Microwave Imaging
- Author
-
Anant Raina and Priyam Patel
- Subjects
medicine.diagnostic_test ,Computer science ,business.industry ,Breast imaging ,0206 medical engineering ,Ultrasound ,020206 networking & telecommunications ,Usability ,Magnetic resonance imaging ,02 engineering and technology ,Machine learning ,computer.software_genre ,020601 biomedical engineering ,Non-ionizing radiation ,Statistical classification ,Microwave imaging ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,Imaging technology ,Artificial intelligence ,business ,Algorithm ,computer - Abstract
Conventional breast imaging methods like Magnetic Resonance Imaging, ultrasound and X-Ray are relied upon by most clinics and doctors worldwide. Breast microwave imaging (BMI) is an alternative imaging technology which uses nonionizing radiation which safer for the body and has a lower cost. A pre-clinical BMI system using breast phantoms is used to create the open source University of Manitoba- BMI dataset (UM-BMID). In this paper, we explore the usability of the dataset, implement different machine learning classification algorithms for tumor detection on UM-BMID and compare our findings with the previously published results. The accuracy achieved was a maximum of 94% which shows great promise for use of machine learning techniques in breast microwave imaging.
- Published
- 2021
- Full Text
- View/download PDF
23. CD81 Facilitates Tumor Cell Clustering and Metastasis in Triple Negative Breast Cancer
- Author
-
Jeremy V. Mathews, Yue Cao, Huiping Liu, Brian Wray, Yuzhi Jia, Valery Adorno-Cruz, Erika K. Ramos, Lamiaa El-Shennawy, Rokana Taftaf, Megan Manu, Massimo Cristofanilli, Andrew D. Hoffmann, Shanshan Zhang, Chia-Feng Tsai, Nurmaa Dashzeveg, Youbin Zhang, Dhwani Patel, Matthew J. Schipma, Liu Xia, David Scholten, Priyam Patel, Yang Shen, Tujin Shi, Valerie Tokars, and Emma J. Schuster
- Subjects
Circulating tumor cell ,biology ,Cellular differentiation ,CD44 ,medicine ,biology.protein ,Cancer research ,Cancer ,medicine.disease ,Primary tumor ,Microvesicles ,Triple-negative breast cancer ,Metastasis - Abstract
Tumor-initiating cells with reprogramming plasticity and/or de-differentiation attributes have been thought to initiate primary tumor development as well as to regenerate secondary tumors in metastatic organs; however, the molecular mechanisms are not fully understood. We previously found that breast tumor-initiating cell marker, CD44, directs multicellular aggregation and cluster formation of circulating tumor cells (CTCs), which further enhance stemness and survival of such cells, enabling metastatic colonization to the lungs. To further elucidate the molecular network underlying CTC cluster formation, we performed global proteomic profiling and discovered that the tetraspanin protein CD81, which is normally enriched in exosomes (small extracellular vesicles), is a new driver of cancer initiation and metastasis as a facilitator and target of CD44. Loss of CD81 compromises tumorigenicity and mammosphere formation of triple negative breast cancer (TNBC) cells. Assisted by machine learning-based algorithms and mutagenesis approach, we found that CD81 interacts with CD44 on the cellular membrane through their extracellular regions. Notably, genetic knockout of CD44 or CD81 results in loss of both CD81 and CD44 in secreted exosomes, a state which abolishes exosome-induced self-renewal of recipient cells, such as mammosphere formation. In addition, RNA sequencing analysis showed that CD81 knockdown up-regulates expression of a cell differentiation marker, SEMA7a, whose down-regulation partially rescues mammosphere formation inhibition by CD81 depletion. Clinically, CD81 expression was observed in >80% of CTCs and specifically enriched and co-expressed along with CD44 in clustered CTCs of breast cancer patients. Mimicing the phenotypes of CD44 deficiency, loss of CD81 also inhibited tumor cell aggregation and lung metastasis of TNBC in both human and mouse tumor models, supporting the clinical significance of CD81 in association with patient outcomes. Our study highlights a new driving role of CD81 in cancer exosome-induced stemness, clustered CTCs, and metastasis initiation of TNBC, reported for the first time to our knowledge.
- Published
- 2021
- Full Text
- View/download PDF
24. Gut microbiome perturbations influence brain amyloidosis only in the presence of microglia in APPPS1‐21 mice
- Author
-
Hemraj B. Dodiya, Can Zhang, Holy Lutz, Ian Q. Weigle, Priyam Patel, Rudolph E. Tanzi, Sangram S. Sisodia, Xiaoqiong Zhang, Carlos Roman-Santiago, Jack A. Gilbert, Monica Olszewski, and Matthew J. Schipma
- Subjects
Microglia ,Epidemiology ,Health Policy ,Amyloidosis ,Biology ,medicine.disease ,Gut microbiome ,Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,medicine.anatomical_structure ,Developmental Neuroscience ,Immunology ,medicine ,Neurology (clinical) ,Geriatrics and Gerontology - Published
- 2020
- Full Text
- View/download PDF
25. Up-Regulation of the Long Noncoding RNA X-Inactive-Specific Transcript and the Sex Bias in Pulmonary Arterial Hypertension
- Author
-
Tim Lahm, Mark Geraci, Priyam Patel, Dan Predescu, Shanshan Qin, Miran Kim, Sanda Predescu, Jiwang Chen, and Brandon L. Carman
- Subjects
0301 basic medicine ,Male ,medicine.medical_specialty ,030204 cardiovascular system & hematology ,Biology ,Pathology and Forensic Medicine ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Downregulation and upregulation ,Internal medicine ,medicine ,Animals ,Humans ,Gene ,Mice, Knockout ,Pulmonary Arterial Hypertension ,Sex Characteristics ,Dosage compensation ,Lung ,Regular Article ,Cell cycle ,Phenotype ,Up-Regulation ,Disease Models, Animal ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,XIST ,Female ,RNA, Long Noncoding ,Cyclin A1 - Abstract
Pulmonary arterial hypertension (PAH) is a sex-biased disease. Increased expression and activity of the long-noncoding RNA X-inactive–specific transcript (Xist), essential for X-chromosome inactivation and dosage compensation of X-linked genes, may explain the sex bias of PAH. The present studies used a murine model of plexiform PAH, the intersectin-1s (ITSN) heterozygous knockout (KO(ITSN+/–)) mouse transduced with an ITSN fragment (EH(ITSN)) possessing endothelial cell proliferative activity, in conjunction with molecular, cell biology, biochemical, morphologic, and functional approaches. The data demonstrate significant sex-centered differences with regard to EH(ITSN)-induced alterations in pulmonary artery remodeling, lung hemodynamics, and p38/ETS domain containing protein/c-Fos signaling, altogether leading to a more severe female lung PAH phenotype. Moreover, the long-noncoding RNA–Xist is up-regulated in the lungs of female EH(ITSN)-KO(ITSN+/–) mice compared with that in female wild-type mice, leading to sex-specific modulation of the X-linked gene ETS domain containing protein and its target, two molecular events also characteristic to female human PAH lung. More importantly, cyclin A1 expression in the S and G(2)/M phases of the cell cycle of synchronized pulmonary artery endothelial cells of female PAH patients is greater versus controls, suggesting functional hyperproliferation. Thus, Xist up-regulation leading to female pulmonary artery endothelial cell sexual dimorphic behavior may provide a better understanding of the origin of sex bias in PAH. Notably, the EH(ITSN)-KO(ITSN+/–) mouse is a unique experimental animal model of PAH that recapitulates most of the sexually dimorphic characteristics of human disease.
- Published
- 2020
26. Isometry groups of infinite-genus hyperbolic surfaces
- Author
-
Priyam Patel, Nicholas G. Vlamis, and Tarik Aougab
- Subjects
Pure mathematics ,Tits alternative ,Group (mathematics) ,Mathematics - Complex Variables ,General Mathematics ,010102 general mathematics ,Geometric Topology (math.GT) ,Group Theory (math.GR) ,Isometry (Riemannian geometry) ,01 natural sciences ,Mathematics::Geometric Topology ,Manifold ,Constant curvature ,Mathematics - Geometric Topology ,Genus (mathematics) ,0103 physical sciences ,FOS: Mathematics ,Uncountable set ,Mathematics::Differential Geometry ,010307 mathematical physics ,Complex Variables (math.CV) ,0101 mathematics ,Isometry group ,Mathematics - Group Theory ,Mathematics - Abstract
Given a 2-manifold, a fundamental question to ask is which groups can be realized as the isometry group of a Riemannan metric of constant curvature on the manifold. In this paper, we give a nearly complete classification of such groups for infinite-genus 2-manifolds with no planar ends. Surprisingly, we show there is an uncountable class of such 2-manifolds where every countable group can be realized as an isometry group (namely, those with self-similar end spaces). We apply this result to obtain obstructions to standard group theoretic properties for the groups of homeomorphisms, diffeomorphisms, and the mapping class groups of such 2-manifolds. For example, none of these groups satisfy the Tits Alternative; are coherent; are linear; are cyclically or linearly orderable; or are residually finite. As a second application, we give an algebraic rigidity result for mapping class groups., 49 pages, 5 figures. v2: incorporates referee's comments, final version, accepted for publication
- Published
- 2020
27. Gut microbiota-driven brain Aβ amyloidosis in mice requires microglia
- Author
-
Xiaoqiong Zhang, Jessica Xia, Priyam Patel, Eugene B. Chang, Monica Olszewski, Hemraj B. Dodiya, Ian Q. Weigle, Yingxia Liang, Julia Michalkiewicz, Sangram S. Sisodia, Jack A. Gilbert, Xulun Zhang, Carlos J Roman-Santiago, Holly L. Lutz, Abhinav Srinath, Can Martin Zhang, Matthew J. Schipma, and Rudolph E. Tanzi
- Subjects
Male ,medicine.medical_specialty ,medicine.drug_class ,Transgene ,Immunology ,Antibiotics ,Mice, Transgenic ,Gut flora ,Antibodies ,Transcriptome ,Feces ,Sex Factors ,Internal medicine ,medicine ,Immunology and Allergy ,Animals ,RNA-Seq ,Receptor ,Amyloid beta-Peptides ,Microglia ,biology ,Amyloidosis ,Gene Expression Profiling ,Brain ,Fecal Microbiota Transplantation ,biology.organism_classification ,medicine.disease ,Phenotype ,Gastrointestinal Microbiome ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Endocrinology ,Gene Ontology ,Cytokines ,Female ,Chemokines - Abstract
We previously demonstrated that lifelong antibiotic (ABX) perturbations of the gut microbiome in male APPPS1-21 mice lead to reductions in amyloid β (Aβ) plaque pathology and altered phenotypes of plaque-associated microglia. Here, we show that a short, 7-d treatment of preweaned male mice with high-dose ABX is associated with reductions of Aβ amyloidosis, plaque-localized microglia morphologies, and Aβ-associated degenerative changes at 9 wk of age in male mice only. More importantly, fecal microbiota transplantation (FMT) from transgenic (Tg) or WT male donors into ABX-treated male mice completely restored Aβ amyloidosis, plaque-localized microglia morphologies, and Aβ-associated degenerative changes. Transcriptomic studies revealed significant differences between vehicle versus ABX-treated male mice and FMT from Tg mice into ABX-treated mice largely restored the transcriptome profiles to that of the Tg donor animals. Finally, colony-stimulating factor 1 receptor (CSF1R) inhibitor-mediated depletion of microglia in ABX-treated male mice failed to reduce cerebral Aβ amyloidosis. Thus, microglia play a critical role in driving gut microbiome–mediated alterations of cerebral Aβ deposition.
- Published
- 2020
28. The First Integral Cohomology of Pure Mapping Class Groups
- Author
-
Aramayona, Javier, Priyam Patel, Nicholas G Vlamis, Aramayona, Javier, Priyam Patel, and Nicholas G Vlamis
- Abstract
It is a classical result that pure mapping class groups of connected, orientable surfaces of finite type and genus at least 3 are perfect. In stark contrast, we construct nontrivial homomorphisms from infinite-genus mapping class groups to the integers. Moreover, we compute the first integral cohomology group associated to the pure mapping class group of any connected orientable surface of genus at least 2 in terms of the surface¿s simplicial homology. In order to do this, we show that pure mapping class groups of infinite-genus surfaces split as a semi-direct product.
- Published
- 2020
29. Covers of surfaces, Kleinian groups, and the curve complex
- Author
-
Tarik Aougab, Priyam Patel, and Samuel J. Taylor
- Subjects
57M10, 57M50, 57M15 ,Mathematics - Geometric Topology ,FOS: Mathematics ,Geometric Topology (math.GT) ,Geometry and Topology - Abstract
We prove an effective version of a theorem relating curve complex distance to electric distance in hyperbolic 3-manifolds, up to errors that are polynomial in the complexity of the underlying surface. We use this to give an effective proof of a result regarding maps between curve complexes of surfaces induced by finite covers. As applications, we effectively relate the electric circumference of a fibered manifold to the curve complex translation length of its monodromy, and we give quantitative bounds on virtual specialness for cube complexes dual to curves on surfaces., Several edits including a streamlined proof of Lemma 5.2. Accepted for publication by the Journal of Topology
- Published
- 2018
30. An introduction to color-changing systems from the cephalopod protein reflectin
- Author
-
Atrouli Chatterjee, Priyam Patel, Alon A. Gorodetsky, Brenna Norton-Baker, and Laura E. Bagge
- Subjects
Optical Phenomena ,Computer science ,Biophysics ,Color ,Context (language use) ,Skin Pigmentation ,02 engineering and technology ,Reflectin ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Biomimetic Materials ,Biomimetics ,Animals ,Amino Acid Sequence ,Chromatophores ,Engineering (miscellaneous) ,biology ,Biological Mimicry ,Decapodiformes ,Pigment cells ,Proteins ,Pigments, Biological ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Chromatophore ,0104 chemical sciences ,Cephalopod ,Cephalopoda ,Camouflage ,biology.protein ,Molecular Medicine ,0210 nano-technology ,Neuroscience ,Biotechnology - Abstract
Cephalopods possess unrivaled camouflage and signaling abilities that are enabled by their sophisticated skin, wherein multiple layers contain chromatophore pigment cells (as part of larger chromatophore organs) and different types of reflective cells called iridocytes and leucophores. The optical functionality of these cells (and thus cephalopod skin) critically relies upon subcellular structures partially composed of unusual structural proteins known as reflectins. Herein, we highlight studies that have investigated reflectins as materials within the context of color-changing coatings. We in turn discuss these proteins' multi-faceted properties, associated challenges, and future potential. Through our presentation of selected case studies, we hope to stimulate additional dialogue and spur further research on photonic technologies based on and inspired by reflectins.
- Published
- 2018
31. Mutation Based Structural Modelling and Dynamics Study of Alpha Fetoprotein: An Insight to Inhibitory Mechanism in Breast Cancer
- Author
-
Pritam Kumar Panda, Sneha Patil, Hetalkumar Panchal, and Priyam Patel
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,medicine.drug_class ,010401 analytical chemistry ,Peptide ,Cell Biology ,medicine.disease ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Computer Science Applications ,AFPep ,Metastasis ,03 medical and health sciences ,030104 developmental biology ,Breast cancer ,chemistry ,Estrogen ,medicine ,Cancer research ,Alpha-fetoprotein ,Glycoprotein ,Molecular Biology ,Tamoxifen ,medicine.drug - Abstract
The incidence of breast cancer is amassed in the current era due to the advent in urbanization, increase in sophisticated vicissitude living, and espousal of western lifestyles. Alpha- fetoprotein, a serum glycoprotein produced during embryonic development tends to act as the curative mediator and has anti-estrotrophic properties to inhibit the growth of estrogen- dependent tumor’s in breast cancer and metastasis. This oncofetal protein exhibits pharmaceutical activity during en route cancer metastasis and pathways lead to tumor cell progression and proliferation. In this work, the maximal inhibitory action of the peptide derived from the active site segment, which was previously suggested in experimental works against mice xenografts (8-mer Peptide), was derived from the structural model generated by homology modelling that retains the inhibitory activity exhibited by the derived AFPep P489- P496 (EMTPVNPG). A comparable mutation study has been undertaken in the derived peptide region to maximize the inhibitory action of the above-said activities. Comparative molecular dynamics study of each mutation has been carried out to know the stability of the octapeptide 489-496 to ensure the curative perspective that is indulged in inhibiting the progression and proliferation of oncofetal proteins in breast cancer. Another modification to the derived peptide was done by addition of hydroxyproline group to the region selected that was previously suggested with the combined effect of tamoxifen and hydroxyproline associated peptide. Molecular docking studies have also been carried out for the octapeptide against Hsp70 which might help in stabilising the anti tumour associated peptide AFPep for better binding efficacy for maximal inhibitory action and treatment of breast cancer.
- Published
- 2018
- Full Text
- View/download PDF
32. The first integral cohomology of pure mapping class groups
- Author
-
Javier Aramayona, Priyam Patel, and Nicholas G. Vlamis
- Subjects
Class (set theory) ,Pure mathematics ,Group (mathematics) ,General Mathematics ,010102 general mathematics ,Geometric Topology (math.GT) ,Group Theory (math.GR) ,16. Peace & justice ,Surface (topology) ,01 natural sciences ,Simplicial homology ,Mathematics::Geometric Topology ,Mapping class group ,Cohomology ,010101 applied mathematics ,Mathematics - Geometric Topology ,Genus (mathematics) ,FOS: Mathematics ,Order (group theory) ,0101 mathematics ,Mathematics - Group Theory ,Mathematics - Abstract
It is a classical result of Powell that pure mapping class groups of connected, orientable surfaces of finite type and genus at least three are perfect. In stark contrast, we construct nontrivial homomorphisms from infinite-genus mapping class groups to the integers. Moreover, we compute the first integral cohomology group associated to the pure mapping class group of any connected orientable surface of genus at least 2 in terms of the surface's simplicial homology. In order to do this, we show that pure mapping class groups of infinite-genus surfaces split as a semi-direct product., v2: Updated to include referees' comments, which includes a significant rewriting of the exposition in the introduction. To appear in Int. Math. Res. Not. IMRN. 23 pages, 5 figures. v1: 21 pages, 4 figures
- Published
- 2017
33. Cephalopod-Derived Biopolymers for Ionic and Protonic Transistors
- Author
-
Priyam Patel, David D. Ordinario, Alon A. Gorodetsky, Tam Nguyen, Rylan Kautz, and Vivek Tyagi
- Subjects
Cuttlefish ,Squid ,Bioelectronics ,Materials science ,biology ,Mechanical Engineering ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,biology.organism_classification ,01 natural sciences ,Additional research ,0104 chemical sciences ,Cephalopod ,Mechanics of Materials ,Camouflage ,biology.animal ,General Materials Science ,0210 nano-technology - Abstract
Cephalopods (e.g., squid, octopuses, and cuttlefish) have long fascinated scientists and the general public alike due to their complex behavioral characteristics and remarkable camouflage abilities. As such, these animals are explored as model systems in neuroscience and represent a well-known commercial resource. Herein, selected literature examples related to the electrical properties of cephalopod-derived biopolymers (eumelanins, chitosans, and reflectins) and to the use of these materials in voltage-gated devices (i.e., transistors) are highlighted. Moreover, some potential future directions and challenges in this area are described, with the aim of inspiring additional research effort on ionic and protonic transistors from cephalopod-derived biopolymers.
- Published
- 2017
34. Algebraic and topological properties of big mapping class groups
- Author
-
Nicholas G. Vlamis and Priyam Patel
- Subjects
Fundamental group ,37E30 ,Group Theory (math.GR) ,mapping class groups ,Topology ,01 natural sciences ,Mathematics - Geometric Topology ,Genus (mathematics) ,57S05, 37E30, 57M07, 20E26 ,0103 physical sciences ,FOS: Mathematics ,Topological group ,0101 mathematics ,Mathematics ,010102 general mathematics ,20E26 ,Geometric Topology (math.GT) ,Surface (topology) ,Automorphism ,Mathematics::Geometric Topology ,Mapping class group ,Homeomorphism ,infinite-type surfaces ,57M07 ,010307 mathematical physics ,Geometry and Topology ,Isomorphism ,Mathematics - Group Theory ,57S05 ,topological groups - Abstract
Let $S$ be an orientable, connected surface with infinitely-generated fundamental group. The main theorem states that if the genus of $S$ is finite and at least 4, then the isomorphism type of the pure mapping class group associated to $S$, denoted $\mathrm{PMap}(S)$, detects the homeomorphism type of $S$. As a corollary, every automorphism of $\mathrm{PMap}(S)$ is induced by a homeomorphism, which extends a theorem of Ivanov from the finite-type setting. In the process of proving these results, we show that $\mathrm{PMap}(S)$ is residually finite if and only if $S$ has finite genus, demonstrating that the algebraic structure of $\mathrm{PMap}(S)$ can distinguish finite- and infinite-genus surfaces. As an independent result, we also show that $\mathrm{Map}(S)$ fails to be residually finite for any infinite-type surface $S$. In addition, we give a topological generating set for $\mathrm{PMap}(S)$ equipped with the compact-open topology. In particular, if $S$ has at most one end accumulated by genus, then $\mathrm{PMap}(S)$ is topologically generated by Dehn twists, otherwise the Dehn twists along with handle shifts topologically generate., 32 pages, 3 figures; v2 has several minor changes and corrections, including a more explicit treatment of the centers of big mapping class groups in Section 3
- Published
- 2017
35. Residual finiteness growths of virtually special groups
- Author
-
Khalid Bou-Rabee, Priyam Patel, and Mark F. Hagen
- Subjects
Group (mathematics) ,General Mathematics ,Special linear group ,Geometric Topology (math.GT) ,Group Theory (math.GR) ,Residual ,Combinatorics ,Mathematics - Geometric Topology ,FOS: Mathematics ,math.GT ,Embedding ,math.GR ,Mathematics - Group Theory ,Mathematics - Abstract
Let $G$ be a virtually special group. Then the residual finiteness growth of $G$ is at most linear. This result cannot be found by embedding $G$ into a special linear group. Indeed, the special linear group $\text{SL}_k(\mathbb{Z})$, for $k > 2$, has residual finiteness growth $n^{k-1}$., Updated version contains minor changes incorporating referee comments/suggestions and a simplified proof of Lemma 4.1
- Published
- 2014
- Full Text
- View/download PDF
36. On a theorem of Peter Scott
- Author
-
Priyam Patel
- Subjects
Loop (topology) ,Pure mathematics ,Cover (topology) ,Applied Mathematics ,General Mathematics ,Calculus ,Surface (topology) ,Geometric data analysis ,Mathematics ,Closed geodesic - Abstract
We quantify Peter Scott’s theorem that surface groups are locally extended residually finite (LERF) in terms of geometric data. In the process, we will quantify another result by Scott that any closed geodesic in a surface lifts to an embedded loop in a finite cover.
- Published
- 2014
- Full Text
- View/download PDF
37. Single-Cell RNA Transcriptome Helps Define the Limbal/Corneal Epithelial Stem/Early Transit Amplifying Cells and How Autophagy Affects This Population
- Author
-
Wending Yang, Han Peng, Robert M. Lavker, Junyi Wang, Nihal Kaplan, Priyam Patel, and Brian Wray
- Subjects
0301 basic medicine ,autophagy ,transit amplifying cell ,Stromal cell ,Cellular differentiation ,Cell Count ,Limbus Corneae ,Biology ,Real-Time Polymerase Chain Reaction ,Cornea ,Transcriptome ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Cell quiescence ,Animals ,Cells, Cultured ,Cell Proliferation ,Membrane Glycoproteins ,Sequence Analysis, RNA ,Cell growth ,Cell Cycle ,Mesenchymal stem cell ,Epithelium, Corneal ,Cell Differentiation ,Mesenchymal Stem Cells ,General Medicine ,Cell cycle ,Immunohistochemistry ,Cell biology ,Mice, Inbred C57BL ,stem cell ,030104 developmental biology ,030221 ophthalmology & optometry ,RNA ,Beclin-1 ,Female ,sense organs ,Stem cell ,Biomarkers - Abstract
Purpose Single-cell RNA-sequencing (scRNA-seq) was used to interrogate the relatively rare stem (SC) and early transit amplifying (TA) cell populations in limbal/corneal epithelia from wild-type and autophagy-compromised mice. Methods We conducted scRNA-seq on ocular anterior segmental tissue from wild-type and beclin 1-deficient (beclin1+/-) mice, using a 10X Gemomics pipeline. Cell populations were distinguished by t-distributed stochastic neighbor embedding. Seurat analysis was conducted to compare gene expression profiles between these two groups of mice. Differential protein expression patterns were validated by immunofluorescence staining and immunoblotting. Results Unbiased clustering detected 10 distinct populations: three clusters of mesenchymal and seven clusters of epithelial cells, based on their unique molecular signatures. A discrete group of mesenchymal cells expressed genes associated with corneal stromal SCs. We identified three limbal/corneal epithelial cell subpopulations designated as stem/early TA, mature TA, and differentiated corneal epithelial cells. Thioredoxin-interacting protein and PDZ-binding kinase (PBK) were identified as novel regulators of stem/early TA cell quiescence. PBK arrested corneal epithelial cells in G2/M phase of the cell cycle. Beclin1+/- mice displayed a decrease in proliferation-associated (Ki67, Lrig1) and stress-response (H2ax) genes. The most increased gene in beclin1+/- mice was transcription factor ATF3, which negatively regulates limbal epithelial cell proliferation. Conclusions Establishment of a comprehensive atlas of genes expressed by stromal and epithelial cells from limbus and cornea forms the foundation for unraveling regulatory networks among these distinct tissues. Similarly, scRNA-seq profiling of the anterior segmental epithelia from wild-type and autophagy-deficient mice provides new insights into how autophagy influences proliferation in these tissues.
- Published
- 2019
- Full Text
- View/download PDF
38. In silico Structure Modeling and Comparative Analysis of Characterization Properties of Protein Polymers Useful for Protein-Based Nano Particulate Drug Delivery Systems (NPDDS): A Bioinformatics Approach
- Author
-
Hetalkumar Panchal and Priyam Patel
- Subjects
chemistry.chemical_classification ,food.ingredient ,In silico ,Albumin ,Nanoparticle ,Bioengineering ,Nanotechnology ,Polymer ,Biochemistry ,Gelatin ,Analytical Chemistry ,food ,chemistry ,Drug Discovery ,Drug delivery ,Molecular Medicine ,Surface modification ,Nanocarriers - Abstract
With an increasing interest in nanoparticulate delivery systems, there is a greater need to identify biomaterials that are biocompatible and safe for human applications. Protein polymers from animal and plant sources are promising materials for designing nanocarriers. Composition of the protein plays an important role for specific drug delivery applications such as drug release, targeting, and stimuli responsive drug release. An important issue in protein polymers is characteristics such as size, charge, and hydrophobicity may play a significant role in phagocytic uptake and initiating a subsequent immune response. This remains to be investigated systematically by analyzing factors that influence nanoparticle characteristics of protein and reduce phagocytic uptake and does not initiate immune response too. Although protein polymers are biodegradable, it is essential to ensure that there must not be premature enzymatic breakdown of the protein nanoparticles in the systemic circulation. Surface modification of the protein nanoparticles can be used to address this issue to propose the necessary modification in the surface of the protein would be great contribution in the nano particulate drug delivery systems (NPPDS). Of the various proteins, gelatin and albumin have been widely studied for drug delivery applications. Plant proteins are yet to be investigated widely for drug delivery applications so there is need to find out the plant proteins capable to act as nanoparticles. The commercial success of albumin-based nanoparticles has created an interest in other proteins. An increased understanding of the physicochemical properties coupled with the developments in rDNA technology will open up new opportunities for protein-based nanoparticulate systems. In the present studies several proteins currently useful for drug delivery system were structurally modeled and has been analyzed to propose the essential characteristics of protein for protein-based NPDDS.
- Published
- 2013
- Full Text
- View/download PDF
39. Inhibitors of nitric oxide synthase induce larval settlement and metamorphosis of the polychaete annelidCapitella teleta
- Author
-
Eric Johns, Theresa Polson, Jan A. Pechenik, William J. Biggers, John Polson, Priyam Patel, and Anthony Pires
- Subjects
Polychaete ,Larva ,Annelid ,biology ,media_common.quotation_subject ,Prostomium ,Anatomy ,biology.organism_classification ,Nitric oxide ,Capitella teleta ,Cell biology ,Nitric oxide synthase ,chemistry.chemical_compound ,chemistry ,biology.protein ,Animal Science and Zoology ,Metamorphosis ,Developmental Biology ,media_common - Abstract
The neurotransmitter nitric oxide (NO) has been implicated in the inhibitory control of metamorphosis of some marine gastropods, echinoderms, and ascidians. We have explored whether or not metamorphosis of metatrochophore larvae of the polychaete annelid Capitella teleta is also regulated by NO. Immunohistochemical analysis revealed a bilateral group of three large nitric oxide synthase (NOS) immunoreactive cells that lie dorsal to the pharynx and extend ventral processes toward the pharynx in the region of the dorsal pharyngeal pad. Smaller NOS-immunoreactive cells were distributed widely throughout the body but concentrated in the prostomium and pygidium. Histological analysis for NO, using the NO detector diaminofluorescein-FM, showed that NO concentration was high in the larval midgut, although diffuse amounts of NO were detected throughout the body. Inhibitors of NOS, including s-methylisothiourea sulfate, aminoguanidine hemisulfate, 7-nitroindazole, and N-methyl-L-arginine all induced settlement and...
- Published
- 2012
- Full Text
- View/download PDF
40. AFPep as Curative Mediator of Breast Cancer: An Insilico Approach
- Author
-
Priyam Patel, Panda, Pritam Kumar, and Patil, Sneha
- Published
- 2016
- Full Text
- View/download PDF
41. Quantifying separability in virtually special groups
- Author
-
Mark F. Hagen, Priyam Patel, and Apollo - University of Cambridge Repository
- Subjects
Surface (mathematics) ,Polynomial ,Hyperbolic group ,General Mathematics ,20E26, 20F36 ,Group Theory (math.GR) ,Residual ,01 natural sciences ,Combinatorics ,Mathematics - Geometric Topology ,Mathematics::Group Theory ,0103 physical sciences ,FOS: Mathematics ,math.GT ,math.GR ,0101 mathematics ,subgroup separable ,Word length ,Mathematics ,010102 general mathematics ,Geometric Topology (math.GT) ,Exponential function ,right-angled Artin groups ,010307 mathematical physics ,virtually special groups ,Mathematics - Group Theory ,quantifying - Abstract
We give a new, effective proof of the separability of cubically convex-cocompact subgroups of special groups. As a consequence, we show that if $G$ is a virtually compact special hyperbolic group, and $Q\leq G$ is a $K$-quasiconvex subgroup, then any $g\in G-Q$ of word-length at most $n$ is separated from $Q$ by a subgroup whose index is polynomial in $n$ and exponential in $K$. This generalizes a result of Bou-Rabee and the authors on residual finiteness growth and a result of the second author on surface groups., 12 pages, 5 figures. Revised in light of referee's comments. To appear in Pacific J. Math
- Published
- 2016
- Full Text
- View/download PDF
42. On the Residual Finiteness Growths of Particular Hyperbolic Manifold Groups
- Author
-
Priyam Patel
- Subjects
Pure mathematics ,Geodesic ,Hyperbolic geometry ,010102 general mathematics ,Coxeter group ,Hyperbolic manifold ,Geometric Topology (math.GT) ,Group Theory (math.GR) ,Residual ,01 natural sciences ,Mathematics::Geometric Topology ,Mathematics - Geometric Topology ,Differential geometry ,0103 physical sciences ,FOS: Mathematics ,Immersion (mathematics) ,20E26, 57M10, 20F65 ,010307 mathematical physics ,Geometry and Topology ,Mathematics::Differential Geometry ,0101 mathematics ,Mathematics - Group Theory ,Orbifold ,Mathematics - Abstract
We give a quantification of residual finiteness for the fundamental groups of hyperbolic manifolds that admit a totally geodesic immersion to a compact, right-angled Coxeter orbifold of dimension 3 or 4. Specifically, we give explicit upper bounds on residual finiteness that are linear in terms of geodesic length. We then extend the linear upper bounds to hyperbolic manifolds with a finite cover that admits such an immersion. Since the quantifications are given in terms of geodesic length, we define the geodesic residual finiteness growth and show that this growth is equivalent to the usual residual finiteness growth defined in terms of word length. This equivalence implies that our results recover the quantification of residual finiteness from \cite{BHP} for hyperbolic manifolds that virtually immerse into a compact reflection orbifold., Accepted for publication in Geometriae Dedicata. Significant improvements have been made due to referee comments/suggestions. The main theorems cover a much larger class of hyperbolic manifolds than was originally indicated. Section 6 of this version is also new. 18 pages, 9 figures
- Published
- 2014
43. Zariski closures and subgroup separability
- Author
-
D. B. McReynolds, Priyam Patel, and Larsen Louder
- Subjects
Surface (mathematics) ,Pure mathematics ,Zariski topology ,Polynomial ,Mathematics(all) ,Group (mathematics) ,General Mathematics ,010102 general mathematics ,General Physics and Astronomy ,Geometric Topology (math.GT) ,Group Theory (math.GR) ,Physics and Astronomy(all) ,01 natural sciences ,Upper and lower bounds ,Mathematics - Geometric Topology ,Mathematics::Group Theory ,Corollary ,0103 physical sciences ,FOS: Mathematics ,010307 mathematical physics ,Finitely-generated abelian group ,0101 mathematics ,Mathematics - Group Theory ,Quotient ,Mathematics - Abstract
The main result of this article is a refinement of the well-known subgroup separability results of Hall and Scott for free and surface groups. We show that for any finitely generated subgroup, there is a finite dimensional representation of the free or surface group that separates the subgroup in the induced Zariski topology. As a corollary, we establish a polynomial upper bound on the size of the quotients used to separate a finitely generated subgroup in a free or surface group., Final version. To appear in Selecta Math
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.