98 results on '"Prilipov AG"'
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2. The 2015-2016 epidemic season in Russia and the world: Circulation of influenza viruses, trends in incidence, clinical aspects, and treatment algorithm
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L. B. Kisteneva, A V Devyatkin, Malyshev Na, I. T. Fedyakina, Kolobukhina Lv, Elena Burtseva, Bazarova Mv, K. G. Krasnoslobodtsev, Sutochnikova Oa, Merkulova Ln, Е A Mukasheva, E. O. Garina, E.S. Kirillova, I. S. Kruzhkova, R V Vartanyan, Prilipov Ag, Feodoritova El, Trushakova Sv, and L'vov Dk
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0301 basic medicine ,History ,Endocrinology, Diabetes and Metabolism ,molecular genetic characteristics ,lcsh:Medicine ,morbidity ,Disease ,Moscow ,Russia ,chemistry.chemical_compound ,0302 clinical medicine ,Influenza A Virus, H1N1 Subtype ,Pregnancy ,Epidemiology ,influenza a(h1n1)pdm09 and (h3n2) ,030212 general & internal medicine ,Child ,biology ,Acute Tonsillitis ,Incidence (epidemiology) ,Incidence ,virus diseases ,General Medicine ,Child, Preschool ,Female ,Seasons ,Family Practice ,influenza ,2015—2016 epidemic season ,influenza b ,Algorithms ,medicine.drug ,Adult ,medicine.medical_specialty ,Oseltamivir ,Adolescent ,Hemagglutinin (influenza) ,03 medical and health sciences ,Young Adult ,antiviral drugs ,Zanamivir ,Internal medicine ,Influenza, Human ,medicine ,Humans ,business.industry ,Influenza A Virus, H3N2 Subtype ,lcsh:R ,Infant, Newborn ,Infant ,medicine.disease ,Virology ,Pneumonia ,030104 developmental biology ,chemistry ,biology.protein ,business - Abstract
In the 2015-2016 epidemic season, there were dominant influenza A(H1N1)pdm09 strains (over 90%) among the circulating influenza viruses in most countries of the Northern Hemisphere and in Russia. A study of the antigenic properties of influenza A(H1N1)pdm09 strains revealed no differences in those of vaccine virus. Sequencing showed that there were amino acid substitutions in hemagglutinin (receptor binding and Sa sites) and in the genes encoding internal proteins (PA, NP, M1, and NS1). The rise in the incidence in the Russian Federation, which was etiologically associated with influenza viruses, was registered in January-February 2016 with its maximum being observed at 4-5 weeks of 2016. Within the framework of the epidemiological surveillance of circulating influenza viruses in the Russian Federation, which was conducted by the WHO European Office, the D.I. Ivanovsky Institute of Virology, Honorary Academician N.F. Gamaleya Federal Research Centre for Epidemiology and Microbiology, Ministry of Health of Russia, and the Research Institute of Influenza, Ministry of Health of Russia, monitored at the Infectious Diseases Hospital One (IDH-1), Moscow Healthcare Department. Among 1491 examinees, influenza was verified in 104 (21.3%) adults, 208 (42.5%) pregnant women, and 177 (36.2%) children. Influenza A(H1N1)pdm09 was more often diagnosed in the age group of 15-40 years (63.7%); the proportion of influenza patients aged over 50 years increased (22.1%). Most adult patients had moderate influenza; pneumonia complicated the disease in 27.4%. Influenza in the pregnant women was complicated by pneumonia in 4.8% of cases. Influenza was more frequently diagnosed in infants and preschool children aged 0 to 3 years (42.9%), 4 to 6 years (41.2%), and older (15.9%), namely: 7-9 years (10%) and 10-12 years (5.9%). Influenza in the children was complicated by acute tonsillitis (19.4%) and varying degrees of laryngeal stenosis (12.4%). Bronchial obstructive syndrome developed in 2.5%, the rate of pneumonia was 6.2%. Antiviral therapy (AVT) in the early stages of the disease reduces the risk of its severity, the frequency of secondary complications, and the duration and degree of clinical symptoms of influenza. AVT with oseltamivir, zanamivir, imidazolyl ethanamide pentandioic acid (ingavirin), and interferon-a2b (viferon) has been performed in the patients hospitalized at Moscow IDH-1 in the 2015-2016 epidemic season.Среди циркулирующих вирусов гриппа в эпидемическом сезоне 2015-2016 гг. в большинстве стран Северного полушария и России доминировали (более 90%) штаммы вируса гриппа A(H1N1)pdm09. Изучение антигенных свойств штаммов вируса гриппа A(H1N1)pdm09 не выявило различий по отношению к вакцинному вирусу. Результаты секвенирования показали наличие аминокислотных замен в гемагглютинине (рецепторсвязывающем и Sa сайтах) и в генах, кодирующих внутренние белки (PA, NP, M1, NS1). Подъем заболеваемости в Российской Федерации, этиологически связанный с вирусами гриппа, регистрировали в январе - феврале 2016 г., максимальный показатель отмечен на 4-5-й неделе 2016 г. В рамках эпидемиологического надзора за циркуляцией вирусов гриппа в Российской Федерации, осуществляемого Европейским отделением ВОЗ, Институтом вирусологии им. Д.И. Ивановского ФГБУ 'Федеральный научно-исследовательский центр эпидемиологии и микробиологии им. почетного акад. Н.Ф. Гамалеи' Минздрава России и ФГБУ 'НИИ гриппа' Минздрава России, проводили госпитальный мониторинг на базе ИКБ #1 Департамента здравоохранения Москвы. Из 1491 обследованного пациента грипп верифицирован у 104 (21,3%) взрослых, 208 (42,5%) беременных и 177 (36,2%) детей. Грипп А(H1N1)pdm09 диагностировали чаще в возрастной группе от 15 до 40 лет (63,7%), увеличилась доля заболевших старше 50 лет (22,1%). Течение гриппа у большинства взрослых пациентов было среднетяжелым, пневмония осложнила грипп у 27,4%. Грипп у беременных осложнен пневмонией в 4,8% случаев. Чаще грипп диагностировали у детей раннего и дошкольного возраста: от 0 до 3 лет - у 42,9%, от 4 до 6 лет - 41,2%; более старшего возраста - 15,9% (7-9 лет - 10%, 10-12 лет - 5,9%). Грипп у детей осложнялся острым тонзиллитом (19,4%) и стенозом гортани разной степени выраженности (12,4%). Бронхообструктивный синдром развился у 2,5%, на долю пневмоний пришлось 6,2%. Противовирусная терапия (ПВТ) на ранних сроках болезни снижает риск развития тяжелого течения, способствует уменьшению частоты вторичных осложнений, сокращению продолжительности и выраженности клинических симптомов гриппа. ПВТ у пациентов, госпитализированных в ИКБ #1 Москвы в эпидемическом сезоне 2015-2016 гг., представлена осельтамивиром, занамивиром, имидазолилэтанамидом пентандиовой кислоты (ингавирин) и интерфероном-α2b (виферон).
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- 2016
3. [Evolution of pandemic influenza virus A(H1N1)pdm09 in 2009-2016: dynamics of receptor specificity of the first hemagglutinin subunit (HA1).]
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I. T. Fedyakina, Anton Syroeshkin, M. Yu Shchelkanov, E.S. Kirillova, L'vov Dk, Prilipov Ag, Elena Burtseva, Proshina Es, N. V. Bovin, Kirillov Im, Bogdanova Vs, Samokhvalov Ei, and S V Alhovsky
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0301 basic medicine ,Male ,Virulence Factors ,viruses ,030106 microbiology ,Population ,Virulence ,Hemagglutinin (influenza) ,Hemagglutinin Glycoproteins, Influenza Virus ,Chick Embryo ,Biology ,medicine.disease_cause ,Virus ,Madin Darby Canine Kidney Cells ,Russia ,Evolution, Molecular ,03 medical and health sciences ,Dogs ,Influenza A Virus, H1N1 Subtype ,Virology ,Pandemic ,Influenza, Human ,Influenza A virus ,medicine ,Animals ,Humans ,Typing ,Receptor ,education ,Pandemics ,education.field_of_study ,virus diseases ,General Medicine ,030104 developmental biology ,Infectious Diseases ,biology.protein ,Receptors, Virus ,Female - Abstract
Introduction. The new reassortant of the swine flu virus A(H1N1)pdm09, which emerged in 2009, overcame the species barrier and caused the 2009-2010 pandemic. One of the key points required for the influenza virus to overcome the species barrier and adapt it to humans is its specific binding to the receptors on the epithelium of the human respiratory tract.Targets and goals. Studying the dynamics of changes in receptor specificity (RS) of the HA1 subunit of the hemagglutinin of the influenza A(H1N1)pdm09 virus strains isolated during the period 2009-2016 on the territory of the Russian Federation, and an analysis of the possible impact of these changes on the incidence rates of the population of the Russian Federation of pandemic influenza in certain epidemic seasons. Material and Methods. Standard methods of collecting clinical materials, isolation of influenza viruses, their typing and genome sequencing were used. For the study of RS of influenza A virus (H1N1)pdm09, the method of solid phase sialosidenzyme analysis was used. Results. It is shown that the change in the parameter W3/6 , which characterizes the degree of a2-3 receptor specificity (a2-3-RS) of the influenza virus A(H1N1)pdm09 over a2-6-RS, coincides with the change in the incidence rates of the Russian Federation’s pandemic flu in separate epidemic seasons. There is a tendency to increase the affinity of the virus A(H1N1)pdm09 to α2-3 analogs of the sialyl-glycan receptors of the human respiratory tract epithelium - α2-3-sialoglycopolymers (α2-3-SGP), and falls to α2-6-SGP, with the virus showing the greatest affinity for sulfated sialoglycopolymers. Discussion. Screening for RS strains of influenza A (H1N1)pdm09 virus isolated on the territory of the Russian Federation in 2009-2016 revealed a decrease in the affinity of viruses for a2-6-sialosides, especially for 6’SL-SGP, which is probably due to the presence of amino acid substitutions in the 222 and 223 positions of RBS HA1 viruses. Previous studies have shown that the presence of such substitutions correlates with an increase in the virulence of the influenza A virus (H1N1)pdm09 [16, 23]. Probably, the pandemic virus has evolved towards the selection of more virulent pneumotropic variants. Conclusion. Monitoring of the receptor specificity of a pandemic influenza virus makes it possible to identify strains with altered RS to the epithelium of the human respiratory tract and an increased ability to transfer from person to person. Change in the period 2009-2016 the W3/6 parameter characterizing the degree of α2-3-RS excess of the influenza A(H1N1)pdm09 virus over α2-6-RS, coincides with the change in the incidence rates of the pandemic influenza population of the Russian Federation in certain epidemic seasons.
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- 2018
4. West Nile virus and other zoonotic viruses in Russia: examples of emerging-reemerging situations
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L. N. Kulikova, T. M. Moskvina, I. V. Galkina, Aristova Va, Duane J. Gubler, A. I. Kovtunov, V. E. Usachev, A. G. Voronina, R. Kinney, L. V. Zlobina, P. G. Deryabin, A. G. Shatalov, Prilipov Ag, G. K. Sadykova, Samokhvalov Ei, V. L. Gromashevsky, Dzharkenov Af, A. M. Butenko, M. Y. Shchelkanov, Harry M. Savage, S. K. Alkhovsky, L'vov Dk, and L'vov Dn
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Flaviviridae ,Flavivirus ,biology ,Phylogenetic tree ,Phylogenetics ,Genotype ,Outbreak ,House mice ,biology.organism_classification ,Virology ,Virus - Abstract
Studies of the interactions of vertebrates, viruses and arthropod vectors of these viruses were monitored in term s of different ecological groups of viruses transmitted by mosquitoes and ticks in Northern Eurasia in an area encompassing more than 15 million km2. About 90 viruses were isolated, including 24 new to science. Newly recognized infections of vertebrates, including humans, were described. Many unusual epidemic situations were analysed. Permanent efforts were established to prevent bioterrorist activities and their consequences. Extensive epidemic outbreaks of West Nile fever (WNF; i.e., fever caused by West Nile virus) and Crimean-Congo hemorrhagic fever (CCHF) with unusual high mortality appeared in the last four years in southern Russia. We determined infection rates in humans, domestic and wild animals, mosquitoes and ticks from natural and synanthropic biocenoses [Editorial note : “synanthropic” means, roughly, all species living with (c.f. lice , fleas) or near people, such as in houses (c.f. house mice), parks (c.f , Rattus spp.), and the like, rather like “peridornestic”, but not strictly so; “biocenosis” is the biome, the “totality of living populations in a particular habitat, which itself is only a part of the ecosystem”.]. CCHF virus strains were phylogenetically similar to strains isolated in this area 35 years ago but different from Central-South-Asian and African strains. Before the outset of the current emergence of epidemic WNF, three genetic variants of this virus had been isolated in USSR, two African and one Indian. Phylogenetic analysis of complete genome sequences of epidemic strains demonstrated considerable similarity to strains from USA and Israel and differences from strains isolated in the same USSR areas 20–30 years before. In addition to strains of genotype 1, we isolated strains of second and third lineages and a strain of a fourth genetic variant. Nucleotide differences of these strains from all three genotypes was about 30%. The emerging WNF situation in Russia for the last 4 years probably has been the result of not only natural and social factors, but also to introduction of more virulent strains or by evolution of the virus.
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- 2004
5. Evolution of Highly Pathogenic Avian Influenza H5N1 Virus in Natural Ecosystems of Northern Eurasia (2005–08)
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S. V. Alkhovsky, David L. Suarez, I. T. Fedyakina, N. A. Vlasov, P. G. Deryabin, A. D. Zaberezhny, Prilipov Ag, L'vov Dk, M. Yu Shchelkanov, and Grebennikova Tv
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Asia ,Highly pathogenic ,Biology ,medicine.disease_cause ,Virus ,Birds ,Food Animals ,medicine ,Animals ,Natural ecosystem ,H5N1 virus ,Ecosystem ,General Immunology and Microbiology ,Influenza A Virus, H5N1 Subtype ,Ecology ,virus diseases ,Outbreak ,Building and Construction ,Biological Evolution ,Influenza A virus subtype H5N1 ,Europe ,GenBank ,Influenza in Birds ,Animal Science and Zoology ,Far East ,geographic locations - Abstract
Fifty-four strains of H5N1 highly pathogenic avian influenza (HPAI) virus were isolated from wild birds in the ecosystems of northern Eurasia and from poultry in the south of western Siberia (July 2005), at the mouth of Volga River (November 2005), at Uvs-Nur Lake on the boundary of the Great Lakes Depression in western Mongolia and the Tyva Republic of Russia (June 2006), in the vicinity of Moscow (February 2007), in the southeastern part of the Russian Plain (September 2007 and December 2007), and in the far east (April 2008) of the Russian Federation and were phenotypically characterized and deposited into the Russian state collection of viruses. Complete genome nucleotide sequences for 24 strains were obtained and deposited into GenBank. In all cases when strains were isolated from both wild birds and poultry in the same outbreak these strains were genetically closely related to each other. Until 2008 all HPAI H5N1 strains isolated in northern Eurasia clustered genetically with the viruses from Kukunor Lake (Qinghai Province, China), known as genotype 2.2 or the "Qinghai-Siberian" genotype. The viruses from the Qinghai-Siberian genotype have continued to evolve from those initially introduced into western Siberia in 2005 into two genetic groups: "Iran-North Caucasian" and "Tyva-Siberian." In vitro replication potential (50% tissue-culture infectious dose in porcine embryo kidney) of Qinghai-Siberian strains decreased over time, which could reflect decreasing virulence. Comparison of genome sequences with biological characteristics of the respective strains permitted us to identify point mutations in PB2, PB1, PA, HA, NP, NA, M2, NS1, and NS2 that possibly influenced the level of replication potential. The HPAI H5N1 virus, which penetrated into the south of the Russian Far East in spring 2008, belonged to genotype 2.3.2.
- Published
- 2010
6. Antigenic Architecture of the H7N2 Influenza Virus Hemagglutinin Belonging to the North American Lineage.
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Lyashko AV, Timofeeva TA, Rudneva IA, Lomakina NF, Treshchalina AA, Gambaryan AS, Sorokin EV, Tsareva TR, Adams SE, Prilipov AG, Sadykova GK, Timofeev BI, Logunov DY, and Gintsburg AL
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- Humans, Animals, Mice, Influenza A Virus, H7N2 Subtype, Antibodies, Monoclonal, North America, Mammals, Hemagglutinins, Influenza, Human
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The North American low pathogenic H7N2 avian influenza A viruses, which lack the 220-loop in the hemagglutinin (HA), possess dual receptor specificity for avian- and human-like receptors. The purpose of this work was to determine which amino acid substitutions in HA affect viral antigenic and phenotypic properties that may be important for virus evolution. By obtaining escape mutants under the immune pressure of treatment with monoclonal antibodies, antigenically important amino acids were determined to be at positions 125, 135, 157, 160, 198, 200, and 275 (H3 numbering). These positions, except 125 and 275, surround the receptor binding site. The substitutions A135S and A135T led to the appearance of an N-glycosylation site at 133N, which reduced affinity for the avian-like receptor analog and weakened binding with tested monoclonal antibodies. Additionally, the A135S substitution is associated with the adaptation of avian viruses to mammals (cat, human, or mouse). The mutation A160V decreased virulence in mice and increased affinity for the human-type receptor analog. Conversely, substitution G198E, in combination with 157N or 160E, displayed reduced affinity for the human-type receptor analog.
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- 2023
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7. [Molecular epidemiological analysis of SARS-CoV-2 genovariants in Moscow and Moscow region].
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Ozhmegova EN, Savochkina TE, Prilipov AG, Tikhomirov E, Larichev VF, Sayfullin MA, and Grebennikova TV
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- Humans, Moscow epidemiology, Phylogeny, SARS-CoV-2 genetics, COVID-19 epidemiology
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Introduction: SARS-CoV-2, a severe acute respiratory illness virus that emerged in China in late 2019, continues to spread rapidly around the world, accumulating mutations and thus causing serious concern. Five virus variants of concern are currently known: Alpha (lineage B.1.1.7), Beta (lineage B.1.351), Gamma (lineage P.1), Delta (lineage B.1.617.2), and Omicron (lineage B.1.1.529). In this study, we conducted a molecular epidemiological analysis of the most prevalent genovariants in Moscow and the region. The aim of the study is to estimate the distribution of various variants of SARS-CoV-2 in Moscow city and the Moscow Region., Materials and Methods: 227 SARS-CoV-2 sequences were used for analysis. Isolation of the SARS-CoV-2 virus was performed on Vero E6 cell culture. Sequencing was performed by the Sanger method. Bioinformatic analysis was carried out using software packages: MAFFT, IQ-TREE v1.6.12, jModelTest 2.1.7, Nextstrain, Auspice v2.34., Results: As a result of phylogenetic analysis, we have identified the main variants of the virus circulating in Russia that have been of concern throughout the existence of the pandemic, namely: variant B.1.1.7, which accounted for 30% (9/30), AY.122, which accounted for 16.7% (5/30), BA.1.1 with 20% (6/30) and B.1.1 with 33.3% (10/30). When examining Moscow samples for the presence of mutations in SARS-CoV-2 structural proteins of different genovariants, a significant percentage of the most common substitutions was recorded: S protein D614G (86.7%), P681H/R (63.3%), E protein T9I (20.0%); M protein I82T (30.0%), D3G (20.0%), Q19E (20.0%) and finally N protein R203K/M (90.0%), G204R/P (73.3 %)., Conclusion: The study of the frequency and impact of mutations, as well as the analysis of the predominant variants of the virus are important for the development and improvement of vaccines for the prevention of COVID-19. Therefore, ongoing molecular epidemiological studies are needed, as these data provide important information about changes in the genome of circulating SARS-CoV-2 variants.
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- 2023
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8. Anti-Ad26 humoral immunity does not compromise SARS-COV-2 neutralizing antibody responses following Gam-COVID-Vac booster vaccination.
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Byazrova MG, Astakhova EA, Minnegalieva AR, Sukhova MM, Mikhailov AA, Prilipov AG, Gorchakov AA, and Filatov AV
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Replication-incompetent adenoviral vectors have been extensively used as a platform for vaccine design, with at least four anti-COVID-19 vaccines authorized to date. These vaccines elicit neutralizing antibody responses directed against SARS-CoV-2 Spike protein and confer significant level of protection against SARS-CoV-2 infection. Immunization with adenovirus-vectored vaccines is known to be accompanied by the production of anti-vector antibodies, which may translate into reduced efficacy of booster or repeated rounds of revaccination. Here, we used blood samples from patients who received an adenovirus-based Gam-COVID-Vac vaccine to address the question of whether anti-vector antibodies may influence the magnitude of SARS-CoV-2-specific humoral response after booster vaccination. We observed that rAd26-based prime vaccination with Gam-COVID-Vac induced the development of Ad26-neutralizing antibodies, which persisted in circulation for at least 9 months. Our analysis further indicates that high pre-boost Ad26 neutralizing antibody titers do not appear to affect the humoral immunogenicity of the Gam-COVID-Vac boost. The titers of anti-SARS-CoV-2 RBD IgGs and antibodies, which neutralized both the wild type and the circulating variants of concern of SARS-CoV-2 such as Delta and Omicron, were independent of the pre-boost levels of Ad26-neutralizing antibodies. Thus, our results support the development of repeated immunization schedule with adenovirus-based COVID-19 vaccines., (© 2022. The Author(s).)
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- 2022
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9. Functional Profiling of In Vitro Reactivated Memory B Cells Following Natural SARS-CoV-2 Infection and Gam-COVID-Vac Vaccination.
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Astakhova EA, Byazrova MG, Yusubalieva GM, Kulemzin SV, Kruglova NA, Prilipov AG, Baklaushev VP, Gorchakov AA, Taranin AV, and Filatov AV
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- Antibodies, Neutralizing, Antibodies, Viral, Humans, Memory B Cells, SARS-CoV-2, Spike Glycoprotein, Coronavirus, Vaccination, COVID-19 prevention & control
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Both SARS-CoV-2 infection and vaccination have previously been demonstrated to elicit robust, yet somewhat limited immunity against the evolving variants of SARS-CoV-2. Nevertheless, reports performing side-by-side comparison of immune responses following infection vs. vaccination have been relatively scarce. The aim of this study was to compare B-cell response to adenovirus-vectored vaccination in SARS-CoV-2-naive individuals with that observed in the COVID-19 convalescent patients six months after the first encounter with the viral antigens. We set out to use a single analytical platform and performed comprehensive analysis of serum levels of receptor binding domain (RBD)-specific and virus-neutralizing antibodies, frequencies of RBD-binding circulating memory B cells (MBCs), MBC-derived antibody-secreting cells, as well as RBD-specific and virus-neutralizing activity of MBC-derived antibodies after Gam-COVID-Vac (Sputnik V) vaccination and/or natural SARS-CoV-2 infection. Overall, natural immunity was superior to Gam-COVID-Vac vaccination. The levels of neutralizing MBC-derived antibodies in the convalescent patients turned out to be significantly higher than those found following vaccination. Our results suggest that after six months, SARS-CoV-2-specific MBC immunity is more robust in COVID-19 convalescent patients than in Gam-COVID-Vac recipients. Collectively, our data unambiguously indicate that natural immunity outperforms Gam-COVID-Vac-induced immunity six months following recovery/vaccination, which should inform healthcare and vaccination decisions.
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- 2022
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10. Studying the Effect of Amino Acid Substitutions in the M2 Ion Channel of the Influenza Virus on the Antiviral Activity of the Aminoadamantane Derivative In Vitro and In Silico .
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Garaev TM, Odnovorov AI, Lashkov AA, Grebennikova TV, Finogenova MP, Sadykova GK, Prilipov AG, Timofeeva TA, Rubinsky SV, Norkina SN, and Zhuravleva MM
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Purpose: The aminoadamantane derivative of L-histidyl-1-adamantayl ethylamine hydrochloride (HCl*H-His-Rim) has showed a high inhibition level against influenza A virus strains in vitro . The aim of this work is to search and establish evidence of the direct effect of the drug on influenza A virus proton channel M2. Methods: The compound HCl*H-His-Rim was obtained by classical peptide synthesis methods. Influenza A virus mutants of A/PuertoRico/8/34(H1N1) strain were obtained by reverse genetics methods. The mutant samples of the virus were cultured on chicken embryos with a virus titer in the hemagglutination test. ELISA was carried out on Madin-Darby canine kidney (MDCK) monolayer cells when multiplying the virus 10
-4 -10-6 . The binding stability of HCl*H-His-Rim was compared to those of M2 (S31N) and M2 (S31N_A30T) channels by molecular dynamic (MD) modeling. The calculation was performed taking into account the interaction with the model lipid bilayer (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine) in the presence of water molecules in accordance with the three-center model. Results: It was found that HCl*H-His-Rim is a direct action drug against influenza A. The most likely conformation of drug binding to target protein has been shown. It has been found that the A30T mutation reduces the binding energy of the drug, and the results obtained in vitro have confirmed the data calculated in silico . Conclusion: The mechanism of action of HCl*H-His-Rim is directly related to the suppression of the function of the proton channel M2 of influenza A virus., (© 2021 The Authors.)- Published
- 2021
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11. [The Effect of I155T, K156Q, K156E and N186K Mutations in Hemagglutinin on the Virulence and Reproduction of Influenza A/H5N1 Viruses].
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Timofeeva TA, Sadykova GK, Lomakina NF, Gambaryan AS, Rudneva IA, Timofeeva EB, Shilov AA, Boravleva EY, Zhuravleva MM, Ivanov PA, Ryazanova EL, and Prilipov AG
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- Animals, Chick Embryo, Mice, Mutation, Orthomyxoviridae Infections virology, Virus Replication, Hemagglutinin Glycoproteins, Influenza Virus genetics, Influenza A Virus, H5N1 Subtype genetics, Influenza A Virus, H5N1 Subtype pathogenicity, Influenza A Virus, H5N1 Subtype physiology, Virulence genetics
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The continued circulation of influenza A virus subtype H5 may cause the emergence of new potential pandemic virus variants, which can be transmitted from person to person. The occurrence of such variants is mainly related to mutations in hemagglutinin (HA). Previously we discovered mutations in H5N1 influenza virus hemagglutinin, which contributes to virus immune evasion. The purpose of this work was to study the role of these mutations in changing other, non-antigenic properties of the virus and the possibility of their maintenance in the viral population. Mutations were introduced into the HA gene of a recombinant H5N1 influenza A virus (VNH5N1-PR8/CDC-RG) using site-specific mutagenesis. The "variant" viruses were investigated and compared with respect to replication kinetics in chicken embryos, thermostability, reproductive activity at different temperatures (33, 37 and 40°C), and virulence for mice. Amino acid substitutions I155T, K156Q, K156E+V138A, N186K led to a decrease in thermal stability, replication activity of the mutant viruses in chicken embryos, and virulence for mice, although these effects differed between the variants. The K156Q and N186K mutations reduced viral reproduction at elevated temperature (40°C). The analysis of the frequency of these mutations in natural isolates of H5N1 influenza viruses indicated that the K156E/Q and N186K mutations have little chance to gain a foothold during evolution, in contrast to the I155T mutation, which is the most responsible for antigenic drift. The A138V and N186K mutations seem to be adaptive in mammalian viruses.
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- 2020
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12. Variability of nonpathogenic influenza virus H5N3 under immune pressure.
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Timofeeva TA, Rudneva IA, Sadykova GK, Lomakina NF, Lyashko AV, Shilov AA, Voronina OL, Aksenova EI, Ryzhova NN, Kunda MS, Asatryan MN, Shcherbinin DN, Timofeeva EB, Kushch AA, Prilipov AG, Adams SE, Logunov DY, Narodisky BS, and Gintsburg AL
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- Hemagglutinin Glycoproteins, Influenza Virus genetics, Influenza A Virus, H5N1 Subtype genetics, Influenza A Virus, H5N1 Subtype immunology, Influenza A Virus, H5N2 Subtype, Mutation, Influenza A virus classification, Influenza A virus immunology, Neuraminidase genetics, Phylogeny, Viral Proteins genetics
- Abstract
Mutations arising in influenza viruses that have undergone immune pressure may promote a successful spread of mutants in nature. In order to evaluate the variability of nonpathogenic influenza virus A/duck/Moscow/4182-C/2010(H5N3) and to determine the common epitopes between it and highly pathogenic H5N1 avian influenza viruses (HPAIV), a set of escape mutants was selected due to action of MABs specific against A/chicken/Pennsylvania/8125/83(H5N2), A/Vietnam/1203/04(H5N1) and A/duck/Novosibirsk/56/05(H5N1) viruses. The complete genomes of escape mutants were sequenced and amino acid point mutations were determined in HA, NA, PA, PB1, PB2, M1, M2, and NP proteins. Comprehensive analysis of the acquired mutations was performed using the Influenza Research Database (https://www.fludb.org) and revealed that all mutations were located inside short linear epitopes, in positions characterized by polymorphisms. Most of the mutations found were characterized as substitutions by predominant or alternative amino acids existing in nature. Antigenic changes depended only on substitutions at positions 126, 129, 131, 145 and 156 of HA (H3 numbering). The positions 126, 145 and 156 were common for HA/H5 of different phylogenetic lineages of H5N1 HPAIV (arisen from A/goose/Guangdong/1/96) and low pathogenic American and Eurasian viruses. Additionally, mutation S145P increased the temperature of HA heat inactivation, compared to wild-type, as was proved by reverse genetics. Moreover, nonpathogenic A/duck/Moscow/4182-C/2010(H5N3) and H5N1 HPAI viruses have the same structure of short linear epitopes in HA (145-157) and internal proteins (PB2: 186-200, 406-411; PB1: 135-143, 538-546; PA: 515-523; NP: 61-68; M1: 76-84; M2: 45-53). These facts may indicate that H5 wild duck nonpathogenic virus could be used as vaccine against H5N1 HPAIV. Keywords: avian influenza virus; H5 hemagglutinin; escape mutants; genetic analysis; phenotypic properties; site-specific mutagenesis.
- Published
- 2020
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13. [Evolution of pandemic influenza virus A(H1N1)pdm09 in 2009-2016: dynamics of receptor specificity of the first hemagglutinin subunit (HA1).]
- Author
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Lvov DK, Bogdanova VS, Kirillov IM, Shchelkanov MY, Burtseva EI, Bovin NV, Fedyakina IT, Prilipov AG, Alhovsky SV, Samokhvalov EI, Proshina ES, Kirillova ES, and Syroeshkin AV
- Subjects
- Animals, Chick Embryo, Dogs, Female, Humans, Madin Darby Canine Kidney Cells, Male, Russia epidemiology, Evolution, Molecular, Hemagglutinin Glycoproteins, Influenza Virus genetics, Hemagglutinin Glycoproteins, Influenza Virus metabolism, Influenza A Virus, H1N1 Subtype genetics, Influenza A Virus, H1N1 Subtype metabolism, Influenza A Virus, H1N1 Subtype pathogenicity, Influenza, Human epidemiology, Influenza, Human genetics, Influenza, Human metabolism, Pandemics, Receptors, Virus metabolism, Virulence Factors genetics, Virulence Factors metabolism
- Abstract
Introduction: The new reassortant of the swine flu virus A(H1N1)pdm09, which emerged in 2009, overcame the species barrier and caused the 2009-2010 pandemic. One of the key points required for the influenza virus to overcome the species barrier and adapt it to humans is its specific binding to the receptors on the epithelium of the human respiratory tract., Purpose: Studying the dynamics of changes in receptor specificity (RS) of the HA1 subunit of the hemagglutinin of the influenza A(H1N1)pdm09 virus strains isolated during the period 2009-2016 on the territory of the Russian Federation, and an analysis of the possible impact of these changes on the incidence rates of the population of the Russian Federation of pandemic influenza in certain epidemic seasons., Material and Methods: Standard methods of collecting clinical materials, isolation of influenza viruses, their typing and genome sequencing were used. For the study of RS of influenza A virus (H1N1)pdm09, the method of solid phase sialosidenzyme analysis was used., Results: It is shown that the change in the parameter W
3/6 , which characterizes the degree of a2-3 receptor specificity (a2-3-RS) of the influenza virus A(H1N1) pdm09 over a2-6-RS, coincides with the change in the incidence rates of the Russian Federation's pandemic flu in separate epidemic seasons. There is a tendency to increase the affinity of the virus A(H1N1)pdm09 to α2-3 analogs of the sialyl-glycan receptors of the human respiratory tract epithelium - α2-3-sialoglycopolymers (α2-3-SGP), and falls to α2-6-SGP, with the virus showing the greatest affinity for sulfated sialoglycopolymers., Discussion: Screening for RS strains of influenza A (H1N1)pdm09 virus isolated on the territory of the Russian Federation in 2009-2016 revealed a decrease in the affinity of viruses for a2-6-sialosides, especially for 6'SL-SGP, which is probably due to the presence of amino acid substitutions in the 222 and 223 positions of RBS HA1 viruses. Previous studies have shown that the presence of such substitutions correlates with an increase in the virulence of the influenza A virus (H1N1)pdm09 [16, 23]. Probably, the pandemic virus has evolved towards the selection of more virulent pneumotropic variants., Conclusion: Monitoring of the receptor specificity of a pandemic influenza virus makes it possible to identify strains with altered RS to the epithelium of the human respiratory tract and an increased ability to transfer from person to person. Change in the period 2009-2016 the W3/6 parameter characterizing the degree of α2-3-RS excess of the influenza A(H1N1)pdm09 virus over α2-6-RS, coincides with the change in the incidence rates of the pandemic influenza population of the Russian Federation in certain epidemic seasons., Competing Interests: The authors declare no conflict of interest.- Published
- 2019
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14. [Three Mutations in the Stalk Region of Hemagglutinin Affect the pH of Fusion and Pathogenicity of H5N1 Influenza Virus].
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Lomakina NF, Sadykova GK, Timofeeva TA, Rudneva IA, Boravleva EY, Ivanov PA, Prilipov AG, and Gambaryan AS
- Subjects
- Animals, Hydrogen-Ion Concentration, Mice, Mice, Inbred BALB C, Virulence, Hemagglutinin Glycoproteins, Influenza Virus genetics, Influenza A Virus, H5N1 Subtype, Mutation, Orthomyxoviridae Infections virology
- Abstract
Previously, an attenuated variant Ku/at was obtained from the highly pathogenic avian influenza virus A/chicken/Kurgan/3/2005 (H5N1) by a reverse selection method aimed at increasing the virus resistance to a proteolytic cleavage and acidic pH values. In the Ku/at, 10 mutations in proteins PB2, PB1, HA, NA, and NS1 occurred. In comparison with the parental strain, the pH of the conformational transition of the viral glycoprotein hemagglutinin (HA) and virulence for mice and chickens have decreased in an attenuated variant. The purpose of this work is to clarify the role of three mutations in the stalk region of HA: Asp54Asn in HA1 and Val48Ile and Lys131Thr in HA2 (H3 HA numbering). To attain these ends, analogous substitutions were introduced into HA with a deleted polybasic cleavage site (important for pathogenicity) of the recombinant A/Vietnam/1203/04-PR8/CDC-RG (H5N1) virus, and so we created the VN3x-PR variant. Viruses VN3x-PR and Ku/at with the same three mutations, but different proteolytic cleavage sites in HA, as well as the corresponding initial viruses, were tested for pathogenicity in mice and in the erythrocyte hemolysis test. Compared with the parental strains, the virulence of their mutant variants in the case of intranasal infection of BALB/c mice decreased by 4-5 orders of magnitude, and the pH of the conformational transition of HA decreased from 5.70-5.80 to 5.25-5.30, which is typical for low pathogenic natural isolates. Thus, as a result of the study, the attenuating role of these three mutations in HA has been proved, a correlation was established between the pH value of the HA conformational transition and the virulence of H5N1 influenza viruses, and it was shown that the polybasic cleavage site of the H5 HA does not always determine high pathogenicity of the virus.
- Published
- 2018
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15. [Mutations in Hemagglutinin and Polymerase Alter the Virulence of Pandemic A(H1N1) Influenza Virus].
- Author
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Gambaryan AS, Lomakina NF, Boravleva EY, Mochalova LV, Sadykova GK, Prilipov AG, Matrosovich TY, and Matrosovich MN
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- Amino Acid Substitution genetics, Animals, Chickens, Dogs, Humans, Influenza A Virus, H1N1 Subtype pathogenicity, Influenza, Human virology, Madin Darby Canine Kidney Cells, Mice, Mutation, Virus Replication genetics, Hemagglutinins genetics, Influenza A Virus, H1N1 Subtype genetics, Influenza, Human genetics, Neuraminidase genetics, RNA-Dependent RNA Polymerase genetics, Viral Proteins genetics
- Abstract
To study the pathogenicity factors of the pandemic A(H1N1) influenza virus, a number of mutant variants of the A/Hamburg/5/2009 (H1N1)pdm09 strain were obtained through passage in chicken embryos, mouse lungs, and MDCK cell culture. After 17 lung-to-lung passages of the A/Hamburg/5/2009 in mice, the minimum lethal dose of the derived variant decreased by five orders of magnitude compared to that of the parental virus. This variant differed from the original virus by nine amino acid residues in the following viral proteins: hemagglutinin (HA), neuraminidase (NA), and components of the polymerase complex. Additional passaging of the intermediate variants and cloning made it possible to obtain pairs of strains that differed by a single amino acid substitution. Comparative analysis of replicative activity, receptor specificity, and virulence of these variants revealed two mechanisms responsible for increased pathogenicity of the virus for mice. Thus, (1) substitutions in HA (Asp225Gly or Gln226Arg) and compensatory mutation decreasing the charge of HA (Lys123Asn, Lys157Asn, Gly158Glu, Asn159Asp, or Lys212Met) altered viral receptor-binding specificity and restored the functional balance between HA and NA; (2) Phe35Leu substitution in the PA protein increased viral polymerase activity.
- Published
- 2018
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16. DRIFT OF INFLUENA A(H3N2) VIRUS: BIOLOGICAL, ANTIGENIC AND GENETIC PROPERTIES IN EPIDEMIC SEASON 2016-2017 IN RUSSIA AND COUNTRIES OF THE NOTHERN HEMYSPHERE.
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Lvov DK, Burtseva EI, Kirillova ES, Kolobukhina LV, Mukasheva EA, Trushakova SV, Feodoritova EL, Merkulova LN, Krasnoslobodtsev KG, Garina EO, Fedyakina IT, Aristova VA, Vartanyan RV, Kisteneva LB, Deryabin PG, Prilipov AG, Rosatkevich AG, Breslav NV, Kruzhkova IS, Belyaev AL, Aksel'Rod EV, Sadykova GK, Shlyapnikova OV, Bazarova MV, and Devyatkin AV
- Abstract
The article presents the features of the influenza virus circulation for the period from October 2016 to May 2017 in some territories of Russia collaborating with the D.I. Ivanovsky Institute of Virology, Federal State Budgetary Institution "N.F. Gamaleya Federal Research Centre for Epidemiology and Microbiology", Ministry of Health of the Russian Federation. One of the 2016-2017 season's peculiarities in Russia and countries of the Northern hemisphere was the earlier start of an increase in ARD morbidity with peak indexes reached towards the end of December 2016 - January 2017. First, influenza A(H3N2) virus was predominant; then, it was followed by influenza B virus activity observed until the end of the season. The indexes of morbidity were higher than in the previous season, while the rates of hospitalization and mortality were lower, lethal cases being detected in persons 65 years old and older. Epidemic strains of influenza A(H3N2) virus belonged to 3c.2a genetic group, reference strain A/Hong Hong/4408/2014, and its subgroup 3c.2a1, reference A/Bolzano/7/2016, that are antigenically similar. Strains of influenza B virus were antigenically similar to the B/Brisbane/60/2008 vaccine virus. Strains were sensitive to oseltamivir and zanamivir. The share participation of non-influenza ARI viruses was similar to preliminary epidemic seasons. WHO has issued recommendations for influenza virus vaccines composition for 2017-2018 for the Northern hemisphere.
- Published
- 2018
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17. Plasmid AZOBR_p1-borne fabG gene for putative 3-oxoacyl-[acyl-carrier protein] reductase is essential for proper assembly and work of the dual flagellar system in the alphaproteobacterium Azospirillum brasilense Sp245.
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Filip'echeva YA, Shelud'ko AV, Prilipov AG, Burygin GL, Telesheva EM, Yevstigneyeva SS, Chernyshova MP, Petrova LP, and Katsy EI
- Subjects
- Protein Folding, 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase genetics, Azospirillum brasilense enzymology, Azospirillum brasilense genetics, Flagella genetics, Plasmids genetics
- Abstract
Azospirillum brasilense can swim and swarm owing to the activity of a constitutive polar flagellum (Fla) and inducible lateral flagella (Laf), respectively. Experimental data on the regulation of the Fla and Laf assembly in azospirilla are scarce. Here, the coding sequence (CDS) AZOBR_p1160043 (fabG1) for a putative 3-oxoacyl-[acyl-carrier protein (ACP)] reductase was found essential for the construction of both types of flagella. In an immotile leaky Fla
- Laf- fabG1::Omegon-Km mutant, Sp245.1610, defects in flagellation and motility were fully complemented by expressing the CDS AZOBR_p1160043 from plasmid pRK415. When pRK415 with the cloned CDS AZOBR_p1160045 (fliC) for a putative 65.2 kDa Sp245 Fla flagellin was transferred into the Sp245.1610 cells, the bacteria also became able to assemble a motile single flagellum. Some cells, however, had unusual swimming behavior, probably because of the side location of the organelle. Although the assembly of Laf was not restored in Sp245.1610 (pRK415-p1160045), this strain was somewhat capable of swarming motility. We propose that the putative 3-oxoacyl-[ACP] reductase encoded by the CDS AZOBR_p1160043 plays a role in correct flagellar location in the cell envelope and (or) in flagellar modification(s), which are also required for the inducible construction of Laf and for proper swimming and swarming motility of A. brasilense Sp245.- Published
- 2018
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18. [Next-Generation Techniques for Discovering Human Monoclonal Antibodies].
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Lushova AA, Biazrova MG, Prilipov AG, Sadykova GK, Kopylov TA, and Filatov AV
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- Animals, Antibodies, Bispecific biosynthesis, Antibodies, Bispecific genetics, Antibodies, Bispecific therapeutic use, Antibodies, Monoclonal biosynthesis, Antibodies, Monoclonal genetics, Antibodies, Neutralizing biosynthesis, Antibodies, Neutralizing genetics, Antibodies, Viral biosynthesis, Antibodies, Viral genetics, Autoimmune Diseases diagnosis, Autoimmune Diseases drug therapy, Autoimmune Diseases pathology, Cell Surface Display Techniques, Communicable Diseases diagnosis, Communicable Diseases drug therapy, Communicable Diseases immunology, Communicable Diseases virology, Humans, Hybridomas immunology, Immunoconjugates genetics, Immunoconjugates metabolism, Immunoconjugates therapeutic use, Neoplasms diagnosis, Neoplasms drug therapy, Neoplasms immunology, Neoplasms pathology, Plasma Cells immunology, Antibodies, Monoclonal therapeutic use, Antibodies, Neutralizing therapeutic use, Antibodies, Viral therapeutic use, Antineoplastic Agents, Immunological therapeutic use, Plasma Cells cytology, Protein Engineering methods
- Abstract
Monoclonal antibodies have found wide applications in the treatment of cancer, as well as of autoimmune, infectious, and other diseases. Several dozen new antibodies are currently undergoing different stages of clinical trials, and some of them will soon be added to the list of immunotherapeutic drugs. Most of these antibodies have been generated using hybridoma technology or a phage display. In recent years, new methods of obtaining human monoclonal antibodies have been actively developing. These methods rely on sequencing immunoglobulin genes from B lymphocytes, as well as on the creation of antibody-secreting stable B-cell lines. The term next-generation antibody-discovery platforms has already been established in the literature to refer to these approaches. Our review focuses on describing the results obtained by these methods.
- Published
- 2017
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19. [Detection of putative polysaccharide biosynthesis genes in Azospirillum brasilense strains from serogroups I and II].
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Petrova LP, Prilipov AG, and Katsy EI
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- Azospirillum brasilense genetics, Azospirillum brasilense metabolism, DNA, Bacterial genetics, DNA, Bacterial metabolism, Genes, Bacterial physiology, Genome, Bacterial physiology, Plasmids genetics, Plasmids metabolism, Polysaccharides, Bacterial biosynthesis, Polysaccharides, Bacterial genetics, Serogroup
- Abstract
It is known that in Azospirillum brasilense strains Sp245 and SR75 included in serogroup I, the repeat units of their O-polysaccharides consist of five residues of D-rhamnose, and in strain SR15, of four; and the heteropolymeric O-polysaccharide of A. brasilense type strain Sp7 from serogroup II contains not less than five types of repeat units. In the present work, a complex of nondegenerate primers to the genes of A. brasilense Sp245 plasmids AZOBR_p6, AZOBR_p3, and AZOBR_p2, which encode putative enzymes for the biosynthesis of core oligosaccharide and O-polysaccharide of lipopolysaccharide, capsular polysaccharides, and exopolysaccharides, was proposed. By using the designed primers, products of the expected sizes were synthesized in polymerase chain reactions on genomic DNA of A. brasilense Sp245, SR75, SR15, and Sp7 in 36, 29, 23, and 12 cases, respectively. As a result of sequencing of a number of amplicons, a high (86–99%) level of identity of the corresponding putative polysaccharide biosynthesis genes in three A. brasilense strains from serogroup I was detected. In a blotting-hybridization reaction with the biotin-labeled DNA of the A. brasilense gene AZOBR_p60122 coding for putative permease of the ABC transporter of polysaccharides, localization of the homologous gene in ~120-MDa plasmids of the bacteria A. brasilense SR15 and SR75 was revealed.
- Published
- 2017
20. [Changes in the phenotypic properties of highly pathogenic influenza A virus of H5N1 subtype induced by N186I and N186T point mutations in hemagglutinin].
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Timofeeva TA, Sadykova GK, Rudneva IA, Boravleva EY, Gambaryan AS, Lomakina NF, Mochalova LV, Bovin NV, Usachev EV, and Prilipov AG
- Subjects
- Amino Acid Substitution, Animals, Chick Embryo, Hemagglutinin Glycoproteins, Influenza Virus genetics, Mice, Orthomyxoviridae Infections genetics, Hemagglutinin Glycoproteins, Influenza Virus metabolism, Influenza A Virus, H5N1 Subtype pathogenicity, Influenza A Virus, H5N1 Subtype physiology, Mutation, Missense, Orthomyxoviridae Infections metabolism, Virus Replication genetics
- Abstract
The change in the phenotypic properties resulting from amino acid substitutions in the hemagglutinin (HA) molecule is an important link in the evolutionary process of influenza viruses. It is believed to be one of the mechanisms of the emergence of highly pathogenic strains of influenza A viruses, including subtype H5N1. Using the site-directed mutagenesis, we introduced mutations in the HA gene of the H5N1 subtype of influenza A virus. The obtained virus variants were analyzed and compared using the following parameters: optimal pH of conformational transition (according to the results of the hemolysis test), specificity of receptor binding (using a set of synthetic analogues of cell surface sialooligosaccharides), thermoresistance (heat-dependent reduction of hemagglutinin activity), virulence in mice, and the kinetics of replication in chicken embryos, and reproductive activity at different temperatures (RCT-based). N186I and N186T mutations in the HA protein increased the virulence of the original virus in mice. These mutations accelerated virus replication in the early stages of infection in chicken embryos and increased the level of replication at late stages. In addition, compared to the original virus, the mutant variants replicated more efficiently at lower temperatures. The obtained data clearly prove the effect of amino acid substitutions at the 186 position of HA on phenotypic properties of the H5N1 subtype of influenza A.
- Published
- 2016
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21. Virological, epidemiological, clinic, and molecular genetic features of the influenza epidemic in 2015-2016: prevailing of the influenza A(H1N1)09 pdm virus in Russia and countries of the Northern hemisphere.
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Lvov DK, Burtseva EI, Kolobukhina LV, Fedyakina IT, Kirillova ES, Trushakova SV, Feodoritova EL, Belyaev AL, Merkulova LN, Krasnoslobodtsev KG, Mukasheva EA, Garina EO, Oskerko TA, Aristova VA, Vartanian RV, Kisteneva LB, Deryabin PG, Prilipov AG, Alkhovsky SV, Kruzhkova IS, Bazarova MV, and Deviatkin AV
- Abstract
This work describes the specific features of the influenza virus circulating in the period from October 2015 to March 2016 in 10 cities of Russia, the basic laboratories of CEEI at the D.I. Ivanovsky Institute of Virology "Federal Research Centre of Epidemilogy and Microbiology named after the honorary academician N.F. Gamaleya" of the Ministry of Health of the Russian Federation. The increase in the morbidity caused by influenza viruses was detected in January-February 2016. The duration of the morbidity peak was 4-5 weeks. The most vulnerable group included children at the age from 3 to 6; a high rate of hospitalization was also detected among people at the age of 15-64 (65%). In clinic symptoms there were middle and severe forms with high frequency of hospitalization as compared with the season of 2009-2010, but much higher in comparison with the season of 2014-2015. Some of the hospitalized patients had virus pneumonias, half of which were bilateral. Among these patients, 10% were children; 30%, adults. The mortality in the intensive care unit of the hospital was 46%. Almost all lethal cases were among unvaccinated patients in the case of late hospitalization and without early antiviral therapy. The predominance of the influenza A(H1N1)09pdm virus both in the Russian Federation and the major part of the countries in the Northern hemisphere was noted. The results of the study of the antigenic properties of influenza strains of A(H1N1)pdm09 virus did not reveal any differences with respect to the vaccine virus. The sequencing data showed the amino acid substitutions in hemagglutinin (receptor binding and Sa sites) and in genes encoding internal proteins (PA, NP, M1, NS1). Strains were sensitive to oseltamivir and zanamivir and maintained resistance to rimantadine. The participation of non-influenza ARI viruses was comparable to that in preliminary epidemic seasons.
- Published
- 2016
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22. [The 2015-2016 epidemic season in Russia and the world: Circulation of influenza viruses, trends in incidence, clinical aspects, and treatment algorithm].
- Author
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Lvov DK, Kolobukhina LV, Burtseva EI, Kruzhkova IS, Malyshev NA, Fedyakina IT, Kirillova ES, Trushakova SV, Feodoritova EL, Merkulova LN, Krasnoslobodtsev KG, Mukasheva ЕA, Garina EO, Vartanyan RV, Kisteneva LB, Prilipov AG, Bazarova MV, Devyatkin AV, and Sutochnikova OA
- Subjects
- Adolescent, Adult, Algorithms, Child, Child, Preschool, Female, Humans, Incidence, Infant, Infant, Newborn, Influenza, Human diagnosis, Influenza, Human drug therapy, Moscow, Pregnancy, Russia epidemiology, Seasons, Young Adult, Influenza A Virus, H1N1 Subtype, Influenza A Virus, H3N2 Subtype, Influenza, Human epidemiology
- Abstract
In the 2015-2016 epidemic season, there were dominant influenza A(H1N1)pdm09 strains (over 90%) among the circulating influenza viruses in most countries of the Northern Hemisphere and in Russia. A study of the antigenic properties of influenza A(H1N1)pdm09 strains revealed no differences in those of vaccine virus. Sequencing showed that there were amino acid substitutions in hemagglutinin (receptor binding and Sa sites) and in the genes encoding internal proteins (PA, NP, M1, and NS1). The rise in the incidence in the Russian Federation, which was etiologically associated with influenza viruses, was registered in January-February 2016 with its maximum being observed at 4-5 weeks of 2016. Within the framework of the epidemiological surveillance of circulating influenza viruses in the Russian Federation, which was conducted by the WHO European Office, the D.I. Ivanovsky Institute of Virology, Honorary Academician N.F. Gamaleya Federal Research Centre for Epidemiology and Microbiology, Ministry of Health of Russia, and the Research Institute of Influenza, Ministry of Health of Russia, monitored at the Infectious Diseases Hospital One (IDH-1), Moscow Healthcare Department. Among 1491 examinees, influenza was verified in 104 (21.3%) adults, 208 (42.5%) pregnant women, and 177 (36.2%) children. Influenza A(H1N1)pdm09 was more often diagnosed in the age group of 15-40 years (63.7%); the proportion of influenza patients aged over 50 years increased (22.1%). Most adult patients had moderate influenza; pneumonia complicated the disease in 27.4%. Influenza in the pregnant women was complicated by pneumonia in 4.8% of cases. Influenza was more frequently diagnosed in infants and preschool children aged 0 to 3 years (42.9%), 4 to 6 years (41.2%), and older (15.9%), namely: 7-9 years (10%) and 10-12 years (5.9%). Influenza in the children was complicated by acute tonsillitis (19.4%) and varying degrees of laryngeal stenosis (12.4%). Bronchial obstructive syndrome developed in 2.5%, the rate of pneumonia was 6.2%. Antiviral therapy (AVT) in the early stages of the disease reduces the risk of its severity, the frequency of secondary complications, and the duration and degree of clinical symptoms of influenza. AVT with oseltamivir, zanamivir, imidazolyl ethanamide pentandioic acid (ingavirin), and interferon-a2b (viferon) has been performed in the patients hospitalized at Moscow IDH-1 in the 2015-2016 epidemic season.
- Published
- 2016
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23. [Insertional mutation in the AZOBR_p60120 gene is accompanied by defects in the synthesis of lipopolysaccharide and calcofluor-binding polysaccharides in the bacterium Azospirillum brasilense Sp245].
- Author
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Katsy EI and Prilipov AG
- Subjects
- Base Sequence, Benzenesulfonates chemistry, Molecular Sequence Data, Azospirillum brasilense genetics, Azospirillum brasilense metabolism, Genes, Bacterial physiology, Lipopolysaccharides biosynthesis, Lipopolysaccharides genetics
- Abstract
In the bacterium Azospirillum brasilense Sp245, extracellular calcofluor-binding polysaccharides (Cal+ phenotype) and two types of lipopolysaccharides, LPSI and LPSII, were previously identified. These lipopolysaccharides share the same repeating O-polysaccharide unit but have different antigenic structures and different charges of their O-polysaccharides and/or core oligosaccharides. Several dozens of predicted genes involved in the biosynthesis of polysaccharides have been localized in the AZOBR_p6 plasmid of strain Sp245 (GenBank accession no. HE577333). In the present work, it was demonstrated that an artificial transposon Omegon-Km had inserted into the central region of the AZOBR_p60120 gene in the A. brasilense Sp245 LPSI- Cal- KM252 mutant. In A. brasilense strain Sp245, this plasmid gene encodes a putative glycosyltransferase containing conserved domains characteristic of the enzymes participating in the synthesis of O-polysaccharides and capsular polysaccharides (accession no. YP004987664). In mutant KM252, a respective predicted protein is expected to be completely inactivated. As a result of the analysis of the EcoRI fragment of the AZOBR_p6 plasmid, encompassing the AZOBR_p60120 gene and a number of other loci, novel data on the structure of AZOBR_p6 were obtained: an approximately 5-kb gap (GenBank accession no. KM189439) was closed in the nucleotide sequence of this plasmid.
- Published
- 2015
24. Location and architecture of an antibody-binding site of influenza A virus nucleoprotein.
- Author
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Varich NL, Sadykova GK, Prilipov AG, Kochergin-Nikitsky KS, Webster RG, and Kaverin NV
- Subjects
- DNA Mutational Analysis, Influenza A virus chemistry, Models, Molecular, Mutagenesis, Site-Directed, Nucleocapsid Proteins, Protein Conformation, RNA-Binding Proteins chemistry, Viral Core Proteins chemistry, Binding Sites, Antibody genetics, Influenza A virus genetics, Influenza A virus immunology, RNA-Binding Proteins genetics, RNA-Binding Proteins immunology, Viral Core Proteins genetics, Viral Core Proteins immunology
- Abstract
Amino acid positions recognized by monoclonal antibodies (MAbs) in the influenza A virus nucleoprotein (NP) have been reported. As these residues were scattered in the three-dimensional (3D) structure of NP, no patterns of the architecture of antibody-binding sites could be inferred. Here, we used site-specific mutagenesis and ELISA to screen the amino acids surrounding position 470 recognized by the MAb 3/1 as a linear epitope. Ten amino acid residues involved in the reaction of NP with the MAb 3/1 and the MAb 469/6 were identified. Our data are the first to outline a compact site recognized by MAbs in the 3D structure of the influenza virus NP.
- Published
- 2014
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25. [The peculiarities of the influenza epidemics in some areas of Russia during 2012-2013 season. The influenza A (H1N1) pdm09 virus domination in European countries].
- Author
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L'vov DK, Burtseva EI, Shchelkanov MIu, Kolobuhina LV, Feodoritova EL, Trushakova SV, Kirillova ES, Breslav NV, Beliaev AL, Merkulova LN, Vartanian RV, Fediakina IT, Bogdanova VS, Proshina ES, Kirillov IM, Kisteneva LV, Ivanova VT, Oskerko TA, Siluianova EV, Mukasheva EA, Krasnoslobodtsev KG, Lavrishcheva VV, Al'khovskiĭ SV, Prilipov AG, Samokhvalov EI, Aristova VA, Morozova TN, Garina EO, and Malysheva NA
- Subjects
- Antiviral Agents therapeutic use, Europe epidemiology, Humans, Influenza, Human drug therapy, Influenza, Human pathology, Influenza, Human virology, Russia epidemiology, Epidemics, Influenza A Virus, H1N1 Subtype pathogenicity, Influenza, Human epidemiology
- Abstract
The peculiarities of the influenza viruses circulation in 2012-2013 are discussed. The results were obtained in 10 cities of Russia, where basic laboratories of the Influenza Ecology and Epidemics Center of on the basis of Ivanovsky Institute of Virology, Ministry of Health of the Russian Federation, are situated. The increasing rate of the ARD morbidity caused by influenza viruses was observed in January-March 2013. The highest indices of the morbidity were detected during 6-7 weeks with the following decreasing rate till threshold levels to week 14. The influenza A (H1N1) pdm09, A (H3N2), and B viruses were the cause of the epidemic, but their activity differed over areas of Russia. The results of study of the antigenic and genetic properties of the influenza strains demonstrated closed relatives with respect to vaccine strains. In addition, some heterogeneity of the circulating strains and their drift variants were found as well. All tested strains were sensitive to oseltamivir (excluding one A (H1N1) pdm09 strain), zanamivir, arbidol, and remained resistant to rimantadine. The ratio of the ARD viruses was comparable with the last epidemic seasons.
- Published
- 2014
26. [The 2013-2014 epidemic season. Hospital monitoring and antiviral therapy for influenza ].
- Author
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Kolobukhina LV, Burtseva EI, Shelkanov MIu, Al'khovskiĭ SV, Prilipov AG, Merkulova LN, Kisteneva LB, Vartanian RV, Kruzhkova IS, Trushakova SV, Krasnoslobodtsev KG, Avdeev SM, Sutochnikova OA, Bazarova MV, Kelly EI, Ambrosi OE, Malyshev nA, L'vov DK, and Chuchalin AG
- Subjects
- Adolescent, Adult, Child, Child, Preschool, Epidemiological Monitoring, Female, Hospitals statistics & numerical data, Humans, Infant, Infant, Newborn, Influenza A Virus, H1N1 Subtype drug effects, Influenza A Virus, H1N1 Subtype isolation & purification, Influenza A Virus, H3N2 Subtype drug effects, Influenza A Virus, H3N2 Subtype isolation & purification, Influenza B virus drug effects, Influenza B virus isolation & purification, Influenza, Human complications, Influenza, Human drug therapy, Male, Moscow epidemiology, Pregnancy, Russia epidemiology, Seasons, Time Factors, Young Adult, Antiviral Agents therapeutic use, Influenza A Virus, H1N1 Subtype pathogenicity, Influenza A Virus, H3N2 Subtype pathogenicity, Influenza B virus pathogenicity, Influenza, Human epidemiology
- Abstract
Aim: To characterize the 2013-2014 epidemic season from the results of detection of influenza infection in patients; to provide the molecular genetic characteristics of the strains isolated from deceased patients., Subjects and Methods: The investigators examined 1203 patients (387 children, 509 people older than 16 years of age, 307 pregnant women) admitted to Moscow Clinical Infectious Diseases Hospital One with the clinical signs of acute respiratory viral diseases. Nasal lavage and autopsy specimens were used to isolate viral strains, then to sequence genomic fragments, and to determine receptor specificity., Results: Out of the 1203 examinees, 284 (23.6%) were influenza-positive: 221 (77.8%), 24 (8.5%), and 39 (13.7%) patients had influenza A(H3N2), influenza A(H1N1)pdm09, and influenza B, respectively. Influenza was notified in 42,7% of the pregnant women. There was a preponderance of its moderate form; its severe form developed in single cases having comorbidities. One fatal outcome was registered. The intake of antiviral medications in the first 48 hours of the disease could prevent complications. The investigators revealed mutations in the strain isolated from the bronchoalveolar lavage fluid of a patient with severe pneumonia complicated by acute respiratory distress syndrome., Conclusion: There is evidence that there are mutant A(H1N1)pdm09 viruses that have high pneumotropicity. The high risk of their circulation in the population and the risk of severe influenza forms involving the lower respiratory tract remain. Early antiviral therapy in the first 36-48 hours diminishes the clinical manifestations of influenza and reduces the risk of developing complications.
- Published
- 2014
27. [Etiology of fatal pneumonia caused by influenza A(H1N1)pdm2009 virus during the pandemic in Russia].
- Author
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Lavrishcheva VV, Burtseva EI, Khomiakov IuN, Shevchenko EC, Oskerko TA, Ivanova SM, Danilevskaia MM, Shchelkanov MIu, Fediakina IT, Alkhovskiĭ SV, Prilipov AG, Zhuravleva MV, Kolobukhina LV, Malyshev NA, and L'vov DK
- Subjects
- Adenoviridae Infections epidemiology, Adenoviridae Infections mortality, Adenoviridae Infections virology, Adolescent, Adult, Aged, Autopsy, Child, Child, Preschool, Coinfection, Female, Humans, Infant, Influenza A Virus, H1N1 Subtype classification, Influenza A Virus, H1N1 Subtype genetics, Influenza, Human epidemiology, Influenza, Human mortality, Influenza, Human virology, Male, Middle Aged, Picornaviridae Infections epidemiology, Picornaviridae Infections mortality, Picornaviridae Infections virology, Pneumonia, Viral epidemiology, Pneumonia, Viral mortality, Pneumonia, Viral virology, RNA, Viral classification, RNA, Viral genetics, Russia epidemiology, Streptococcal Infections epidemiology, Streptococcal Infections microbiology, Streptococcal Infections mortality, Influenza A Virus, H1N1 Subtype isolation & purification, Influenza, Human complications, Pandemics, Pneumonia, Viral etiology, RNA, Viral isolation & purification
- Abstract
The results of the study of the autopsy materials from 61 patients with the diagnosis of pneumonia received by virological and genetic methods are reviewed. The materials were studied at the Influenza Etiology and Epidemiology Center of the Ivanovsky Institute of Virology, Ministry of Health and Social Development of the Russian Federation, during epidemic seasons 2009-2010 and 2010-2011. The data were analyzed with respect to age, sex, comorbidity diseases and identified on the groups of the risk of severe forms of the disease. The presence of the pandemic influenza virus strain RNA was confirmed in 70.5% of materials; RNA of influenza B was detected in 1.2% cases. The co-infections caused by the bocavirus, adenovirus, parainfluenza virus type 2 and 4, rhinovirus, and streptococcus were detected only in 19.7%. In most cases, the influenza virus was the etiologic agent of lethal pneumonia, which justifies the necessity of the early etiological diagnosis and treatment with antiviral drugs.
- Published
- 2013
28. [Development of the influenza epidemic in season 2011-2012 in some areas of Russia: results of activity of the Influenza Etiology and Epidemiology Center of the Ivanovsky Institute of Virology].
- Author
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L'vov DK, Burtseva EI, Kolobukhina LV, Feodoritova EL, Shevchenko ES, Ivanova VT, Lavrishcheva VV, Breslav NV, Trushakova SV, Merkulova LN, Vartanian RV, Kisteneva LB, Oskerko TA, Al'khovskiĭ SV, Siluianova ÉV, Mukasheva EA, Krasnoslobodtsev KG, Prilipov AG, Beliaev AL, Samokhvalov EI, Shchelkanov MIu, and Malyshev NA
- Subjects
- Adolescent, Adult, Age Factors, Antigens, Viral genetics, Antigens, Viral immunology, Antiviral Agents administration & dosage, Child, Child, Preschool, Female, Humans, Infant, Infant, Newborn, Influenza Vaccines administration & dosage, Influenza Vaccines genetics, Influenza Vaccines immunology, Male, Middle Aged, Phylogeny, Russia epidemiology, Time Factors, Influenza A Virus, H3N2 Subtype genetics, Influenza A Virus, H3N2 Subtype immunology, Influenza B virus genetics, Influenza B virus immunology, Influenza, Human drug therapy, Influenza, Human epidemiology, Influenza, Human genetics, Influenza, Human immunology
- Abstract
The results of analysis of the peculiarities of the epidemic 2011-2012 development in the areas of 10 cities of Russia obtained by basic laboratories of IEES on the base of D.I. Ivanovsky Research Institute of Virology, Ministry of Public Health and Social Development of Russia, are presented. The increasing ARD morbidity caused by the influenza viruses was detected rather late--in February-March 2012. The highest indices of the morbidity were detected during weeks 10-13 followed by decreasing to threshold levels by week 27. Children 0-2 and 3-6 years old were involved the most, meantime the high rate of hospitalization was found for 15-64 years old aged group (25%). Influenza A(H3N2) and B viruses were the cause of the epidemic. The results of studies of the antigenic and genetic properties of the influenza strains showed most of them to be close relatives to the vaccine strains. Some heterogeneity of circulating strains and their drift variants were found as well. All tested strains were sensitive to arbidol, oseltamivir and zanamivir, and saved resistance to rimantadine. The ratio of ARD viruses was comparable with the last epidemic seasons.
- Published
- 2013
29. [Efficacy of anti-neuraminidase drugs application during and after an influenza pandemic].
- Author
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Breslav NV, Shevchenko ES, Abramov DD, Prilipov AG, Zhuravleva MM, Oskerko TA, Kolobukhina LV, Merkulova LN, Shchelkanov MIu, Burtseva EI, and L'vov DK
- Subjects
- Animals, Cell Line, Dogs, Female, Humans, Influenza, Human enzymology, Influenza, Human epidemiology, Influenza, Human genetics, Male, Retrospective Studies, Russia, Drug Resistance, Viral drug effects, Drug Resistance, Viral genetics, Enzyme Inhibitors administration & dosage, Influenza A Virus, H1N1 Subtype enzymology, Influenza A Virus, H1N1 Subtype genetics, Neuraminidase antagonists & inhibitors, Neuraminidase genetics, Oseltamivir administration & dosage, Pandemics
- Abstract
The emergent 2009 A(H1N1) pandemic brought into acute focus the problem of choosing the most effective anti-influenza drugs for successive influenza infection spreading control. Oseltamivir and zanamivir, influenza virus neuraminidase inhibitors (NAIs), were recommended by the WHO experts for the treatment and prevention of influenza, including that caused by pandemic strains. A major concern regarding the use of specific antiviral compounds is the emergence of the drug-resistant strains. Oseltamivir carboxylate and zanamivir IC50 values were equal to 0.3-5.2 microM for the most of A(H1N1)pdm09 pandemic strains and 1.6-8.6 microM for the strains of influenza B virus in cell-based ELISA assay (2009-2010 season). All the studied strains of influenza A(H1N1 ) pdm09 (151) and B (22) viruses were sensitive to NAIs (2009-2011 seasons). For the first time in Russia oseltamivir-resistant A(H1N1) pdm09 influenza virus was isolated from the patient on the 5th day of a treatment course of this drug.
- Published
- 2013
30. [Correlation between the receptor specificity of pandemic influenza A (H1N1)pdm09 virus strains isolated in 2009-2011 and the structure of the receptor-binding site and the probability of fatal primary viral pneumonia].
- Author
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L'vov DK, Shchelkanov MIu, Bovin NV, Malyshev NA, Chuchalin AG, Kolobukhina LV, Prilipov AG, Bogdanova VS, Al'khovskiĭ SV, Samokhvalov EI, Fediakina IT, Burtseva EI, Deriabin PG, Zhuravleva MM, Shevchenko ES, Lavrishcheva VV, L'vov DN, Proshina ES, Starikov NS, Morozova TN, Bazarova MV, Grigor'eva TA, Kirillov IM, Shidlovskaia EV, Kelli EI, Malikov VE, Iashkulov KB, Anan'ev VIu, Baranov NI, Gorelikov VN, Tsoi OV, Garbuz IuA, Reznik VI, Ivanov LI, Fedelesh IIu, Ponomarenko RA, Sakharova EA, Lebedev GB, and Maslov AI
- Subjects
- Amino Acid Substitution, Binding Sites, Hemagglutinins metabolism, Humans, Influenza A Virus, H1N1 Subtype genetics, Influenza A Virus, H1N1 Subtype pathogenicity, Influenza, Human complications, Influenza, Human transmission, Influenza, Human virology, Molecular Mimicry, Pandemics, Pneumonia, Viral etiology, Pneumonia, Viral transmission, Pneumonia, Viral virology, Polymers chemistry, Polymers metabolism, Probability, Receptors, Virus genetics, Receptors, Virus metabolism, Russia epidemiology, Sialoglycoproteins chemistry, Sialoglycoproteins metabolism, Survival Analysis, Viral Proteins metabolism, Hemagglutinins genetics, Influenza A Virus, H1N1 Subtype metabolism, Influenza, Human mortality, Pneumonia, Viral mortality, Receptors, Virus chemistry, Viral Proteins genetics
- Abstract
The receptor specificity (RS) of pandemic influenza A(H1N1) pdm09 virus strains deposited into the State Collection of Viruses of the Russian Federation, D. I. Ivanovsky Research Institute of Virology, Ministry of Health and Social Development of Russia, in the 2009-2010 and 2010-2011 epidemic seasons to a panel of 9 sialoglycopolymers (SGP). The strains were divided into 3 groups according to the W(3/6) index proposed by the authors, which was equal to the amount of reactivities to unbranched alpha2-3-SGP to that of reactivities to unbranched alphal-6-SGP: W(3/6) < or = 1.0; 1.0 < W(3/6) < or = 1.5. The W(3/6) < or = 1.5 group showed a predominance of a2-3-RS, attended by the high incidence of fatal primary viral pneumonias (FPVP) (60.0%) and amino acid replacements in the HA1 receptor-binding site (RBS) (80.0%): D222{G, N} and Q223R. The 1.0 < W(3/6) < or = 1.5 group was characterized by mixed alpha2-3/alpha2-6-RS with the incidence of FPVP (29.7%) and amino acid replacements in the HA1 RBS (40.5%) (D222{G, N, V} and Q223), respectively. In the W(3/6) < or = 1.0 group, alpha2-6-RS was prevalent, FPVPs were absent and amino acid replacements in HA1 RBS (D222{G, E}) were seen only in 6.0% of cases. The number of strains with increased specificity to alpha2-3-sialosides increased in the 2010-2011 epidemic season as compared to the previous season. With their further spread among the population, there may be a rise in cases of severe primary viral pneumonias with possible fatal outcomes, which can be, however, accompanied by a decrease in the capacity of mutants to air-dropwise transmission.
- Published
- 2012
31. [The specific features of the cocirculation of influenza viruses in the 2010-2011 postpandemic period according to the results of activities of the D. I. Ivanovsky Research Institute of Virology, Ministry of Health and Social Development of Russia].
- Author
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Burtseva EI, L'vov DK, Shchelkanov MIu, Kolobukhina LV, Prilipov AG, Al'khovskiĭ SV, Lavrishcheva VV, Shevchenko ES, Fediakina IT, Ivanova VT, Beliakova NV, Proshina ES, Abramov DD, Trushakova SV, Merkulova LN, Vartanian RV, Kisteneva LB, Samokhvalov EI, Oskerko TA, Feodoritova EL, Siluianova ÉV, Mukasheva EA, Beliaev AL, Malikov VE, and Malyshev NA
- Subjects
- Academies and Institutes, Adenoviridae drug effects, Adenoviridae physiology, Adenoviridae Infections drug therapy, Adenoviridae Infections virology, Adolescent, Adult, Antiviral Agents administration & dosage, Antiviral Agents therapeutic use, Child, Child, Preschool, Coinfection, Drug Resistance, Viral, Humans, Influenza A Virus, H1N1 Subtype drug effects, Influenza A Virus, H1N1 Subtype physiology, Influenza A Virus, H3N2 Subtype drug effects, Influenza A Virus, H3N2 Subtype physiology, Influenza B virus, Influenza, Human drug therapy, Influenza, Human virology, Oseltamivir administration & dosage, Oseltamivir therapeutic use, Respirovirus drug effects, Respirovirus physiology, Respirovirus Infections drug therapy, Respirovirus Infections virology, Rimantadine administration & dosage, Rimantadine therapeutic use, Russia epidemiology, Seasons, Adenoviridae Infections epidemiology, Influenza, Human epidemiology, Pandemics, Respirovirus Infections epidemiology
- Abstract
The paper gives the results of monitoring the circulation of influenza viruses in the 2010-2011 season, that covers the second year of circulation of pandemic A(H1N1)v virus strains, and their interaction with seasonal A (H3N2) and B strains. Unlike the previous season, the beginning of an increase in morbidity was recorded in January 2011; its peak in the most of contiguous areas was noted at 5-7 weeks of 2011, with its further decline to threshold levels at week 11 of 2011. Preschool and school children were most involved in the epidemic process. Three influenza virus strains (A(H1N1)v, A(H3N2), and B) were found to circulate. Differences were found in the level of participation of the isolated strains in individual areas of the Russian Federation. Detailed typing of the isolated strains determined the compliance of the vast majority of them with vaccine viruses. The pandemic influenza A(H1N1)v virus strains retained their susceptibility to oseltamivir and were resistant to rimantadine. The participation of non-influenza acute respiratory viral infection pathogens was estimated as follows: 11.9% for parainfluenza viruses, 5.9% for adenoviruses, and 3.5% for PC viruses, and 0.7% for pneumonia Mycoplasma, which was comparable with the previous epidemic seasons.
- Published
- 2012
32. Antibody-binding epitope differences in the nucleoprotein of avian and mammalian influenza A viruses.
- Author
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Varich NL, Sadykova GK, Prilipov AG, Kochergin-Nikitsky KS, Kushch AA, Masalova OV, Klimova RR, Gitelman AK, and Kaverin NV
- Subjects
- Amino Acid Substitution, Animals, Antibodies, Monoclonal immunology, Ducks, Epitopes genetics, Humans, Influenza A Virus, H5N1 Subtype isolation & purification, Influenza in Birds virology, Influenza, Human virology, Mutant Proteins genetics, Mutant Proteins immunology, Nucleocapsid Proteins, Protein Binding, Antibodies, Viral immunology, Epitopes immunology, Influenza A Virus, H5N1 Subtype immunology, RNA-Binding Proteins immunology, Viral Core Proteins immunology
- Abstract
Abstract Influenza virus nucleoprotein (NP) binds to the viral genome RNA and forms the internal ribonucleoprotein complex of the virus particle. Avian and human influenza virus NP have characteristic differences at several amino acid positions. It is not known whether any of these differences can be recognized by antibodies. In the present study five monoclonal antibodies (MAbs) were produced against NP of A/Duck/Novosibirsk/56/05 (H5N1) influenza virus. Two MAbs discerned human and avian influenza strains on ELISA testing. The NP expressed in a prokaryotic system was used for the analysis of site-specific mutants carrying amino acid substitutions in the relevant positions. Amino acid residues in positions 100 and 101 were shown to be recognized by the MAbs. The residue in position 100 is host-specific, and its recognition by the MAb 2E6 may be useful for the differentiation of human and avian viruses. The data are discussed in view of the effects of amino acid substitutions in influenza virus NP affecting both host range and antibody-binding specificity.
- Published
- 2011
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33. [Contribution of D I Ivanovsky Research Institute of Virology to monitoring influenza viruses during epidemics and 2009 pandemic in Russia].
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Burtseva EI, Ivanova VT, Beliaev AL, Shevchenko ES, Oskerko TA, Feodoritova EL, Kolobukhina LV, Prilipov AG, and Shchelkanov MIu
- Subjects
- Environmental Monitoring, Epidemiological Monitoring, Genome-Wide Association Study, Humans, Influenza Vaccines, Mass Vaccination organization & administration, Pandemics statistics & numerical data, Polymerase Chain Reaction, Quality Assurance, Health Care, Russia epidemiology, Communicable Disease Control methods, Influenza, Human diagnosis, Influenza, Human epidemiology, Influenza, Human prevention & control, Influenza, Human virology, Orthomyxoviridae drug effects, Orthomyxoviridae genetics, Orthomyxoviridae pathogenicity, Pandemics prevention & control
- Abstract
The data on monitoring influenza viruses in Russia are presented based on the research underway at Ivanovsky Research Institute of Virology since 1959. The Institute's priority in isolation and identification of influenza viruses during epidemics and 2009 pandemic is confirmed. Results of assessment of influenza vaccines and etiotropic preparations, development and introduction of new methods for diagnostics of influenza are discussed.
- Published
- 2011
34. [Characteristic of the new Khatanga virus genotype].
- Author
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Poglazov AB, Shliapnikova OV, and Prilipov AG
- Subjects
- Classification, Genome-Wide Association Study, Humans, Molecular Sequence Data, Phylogeny, RNA, Viral genetics, Russia epidemiology, Base Sequence genetics, Encephalitis, California epidemiology, Encephalitis, California virology, Genome, Viral, La Crosse virus genetics
- Abstract
Complete nucleotide sequence of the S-segment and partial sequences of M- and L-segments (981 and 1005 nucleotide respectively) have been determined in 20 strains of California encephalitis serocomplex, isolated in Yakitiya, Sakhalin, and Kamchatka. The phylogenetic analysis ofgenomic S-, M-, and L-segments showed that all 20 strains are related to Khatanga virus (La Cross subtype of California encephalitis serotype). Eight strains belong to group 2 of Khatanga virus while the remaining 12 make up a new (third) genetic group of this virus having original S- and M-segments and L-segment similar to that of the second group.
- Published
- 2011
35. [Pandemic influenza in Russia: specific features of clinical course and the absence of early etiotropic therapy as a risk factor of severe forms of the disease].
- Author
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Kolobukhina LV, Merkulova LN, Shchelkanov MIu, Burtseva EI, Lavrishcheva VV, Samokhvalov EI, Al'khovskiĭ SV, Prilipov AG, Proshina ES, Avdeev SN, Sutochnikova OA, Bazarova MV, Kelli EI, Tserukalova ND, Blank IA, Shestakova OM, Kolivashko ON, Arseneva TV, Ambrosi OE, Shul'diakov AA, Popov AF, Simakova AI, Malyshev NA, Chuchalin AG, and L'vov DK
- Subjects
- Adolescent, Adult, Amides administration & dosage, Antiviral Agents administration & dosage, Caproates, Dicarboxylic Acids administration & dosage, Drug Administration Schedule, Female, Humans, Imidazoles administration & dosage, Influenza, Human epidemiology, Influenza, Human virology, Male, Middle Aged, Oseltamivir administration & dosage, Risk Factors, Russia epidemiology, Severity of Illness Index, Time Factors, Treatment Outcome, Young Adult, Amides therapeutic use, Antiviral Agents therapeutic use, Dicarboxylic Acids therapeutic use, Imidazoles therapeutic use, Influenza A Virus, H1N1 Subtype isolation & purification, Influenza, Human drug therapy, Oseltamivir therapeutic use, Pandemics
- Abstract
Aim: To assess efficacy and safety of ingavirin in the treatment of the flu caused by pandemic virus of flu A (H1N1) sw1 in hospitalized patients compared with oseltamivir., Material and Methods: A population-based comparative multicenter trial included 194 patients with verified diagnosis of the flu aged 18-60 years with marked clinical symptoms, body temperature over 38 degrees C and duration of the disease 48 hours maximum. The patients were randomized into 2 groups: group 1 (n=152) received ingavirin (90 mg once a day), group 2 received oseltamivir (n=42) in a dose 150 mg twice a day. Duration of the course was 5 days., Results: Ingavirin and oseltamivir normalized body temperature within treatment hours 24-36 if therapy was initiated in the first disease hours 27.0 +/- 10.0 and 31.9 +/- 10.4. Mean duration of the fever for ingavirin was 35.1 +/- 14.5 hours, for oseltamivir--26.3 +/- 13.0 hours (p < 0.817). The antiviral medicines significantly reduced duration of intoxication (head ache, weakness), catarrhal symptoms (cough, tracheitis, rhinitis), rate of complication vs. patients untreated with antivirus drugs (n=30)., Conclusion: The results of the treatment show safety and efficacy of ingavirin in uncomplicated flu caused by pandemic virus of flu A (H1N1) sw1 in inpatients. Early etiotropic therapy is a basic treatment policy able to reduce the number of severe complications and lethality.
- Published
- 2011
36. [Etiotropic therapy of influenza: lessons from the last pandemic].
- Author
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Kolobukhina LV, Shchelkanov MIu, Merkulova LN, Bazarova MV, Burtseva EI, Samokhvalov EI, Al'khovskiĭ SV, Prilipov AG, Fediakina IT, Proshina ES, Aristova VA, Morozova TN, Sutochnikova OA, Ponomarenko RA, Malyshev NA, Maslov AM, and Chuchalin AG
- Subjects
- Antiviral Agents administration & dosage, Antiviral Agents adverse effects, Communicable Diseases, Emerging virology, Drug Resistance, Viral, Early Diagnosis, Hemagglutination, Viral genetics, Humans, Influenza Vaccines therapeutic use, Influenza, Human epidemiology, Influenza, Human virology, Pandemics prevention & control, Pneumonia, Viral epidemiology, Pneumonia, Viral physiopathology, Pneumonia, Viral virology, Prognosis, Severity of Illness Index, Viral Interference, Influenza A Virus, H1N1 Subtype drug effects, Influenza A Virus, H1N1 Subtype pathogenicity, Influenza A Virus, H1N1 Subtype physiology, Influenza, Human drug therapy, Influenza, Human physiopathology, Oseltamivir administration & dosage, Oseltamivir adverse effects, Pneumonia, Viral drug therapy, Viral Tropism genetics, Zanamivir administration & dosage, Zanamivir adverse effects
- Abstract
Analysis of the experience gained during the last pandemic of 'swine' influenza A (H1N1) sw1 is presented with reference to clinical studies and etiotropic therapy. The mechanism of development of severe pneumonia as a result of mutations at the binding site of hemagglutinin receptor enhancing a2'-3'-sialoside specificity and pneumotropism of the virus is described. The data on the efficiency of Ingavirin, a new Russian antiviral for the treatment of influenza, are reported.
- Published
- 2011
37. [Sensitivity of the epidemic and pandemic influenza virus strains to zanamivir (Relenze) in in vitro experiments].
- Author
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L'vov DK, Burtseva EI, Galegov GA, Beliakova NV, Shevchenko ES, Kolobukhina LV, Merkulova LN, Prilipov AG, Leneva IA, Baranov NI, Gorelikov VN, and Abramov DD
- Subjects
- Animals, Cell Line, Dogs, Humans, Influenza A virus enzymology, Influenza B virus enzymology, Influenza, Human drug therapy, Influenza, Human virology, Microbial Sensitivity Tests, Neuraminidase antagonists & inhibitors, Oseltamivir pharmacology, Russia epidemiology, Viral Proteins antagonists & inhibitors, Antiviral Agents pharmacology, Disease Outbreaks, Drug Resistance, Viral, Influenza A virus drug effects, Influenza B virus drug effects, Influenza, Human epidemiology, Zanamivir pharmacology
- Abstract
The paper presents the results of the first Russian experience in evaluating the sensitivity of the epidemic and pandemic influenza virus strains, circulating in the period 2009-2010, to the anti-neuraminidase drug zanamivir. A complex of studies, including enzyme immunoassay, fluorometric assay and partial sequence of the neuraminidases (NA1 and NA2) from influenza A virus strain, was applied. The findings Indicate that all the test strains, including those resistant to oseltamivir, were susceptible to zanamivir. The latter is recommended by the WHO for the prevention and treatment of influenza in pregnant women.
- Published
- 2010
38. [Molecular genetic studies of the susceptibility of epidemic influenza A(H1N1) virus strains isolated in the 2006-2009 seasons in Russia to oseltamivir (Tamiflu)].
- Author
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Beliakova NV, Al'khovskiĭ SV, Shevchenko ES, Prilipov AG, Abramov DD, Kolobukhina LV, Merkulova LN, Trushakova SV, and Burtseva EI
- Subjects
- Genes, Viral genetics, Humans, Influenza, Human drug therapy, Influenza, Human virology, Microbial Sensitivity Tests, Mutation, Neuraminidase genetics, Polymorphism, Restriction Fragment Length, Russia epidemiology, Viral Proteins genetics, Antiviral Agents pharmacology, Drug Resistance, Viral genetics, Influenza A Virus, H1N1 Subtype drug effects, Influenza A Virus, H1N1 Subtype genetics, Influenza, Human epidemiology, Oseltamivir pharmacology
- Abstract
Oseltamivir (Tamiflu) is recommended by WHO experts as a drug to treat and prevent of influenza and to create stocks if its new pandemic variant occurs. The susceptibility of influenza viruses to oseltamivir was studied by polymerase chain reaction-based techniques detecting specific mutations in the neuraminidase gene. The increase in the number of oseltamivir-resistant influenza viruses, isolated from the Russian Federation, with type 1 neuraminidase H274Y mutation from 49% (2007-20008) to 92% (2008-2009) did not depend on the frequency of oseltamivir use. Full correlation of the results obtained by various techniques allows them to be used to monitor the susceptibility of influenza viruses to oseltamivir.
- Published
- 2010
39. [A possible association of fatal pneumonia with mutations of pandemic influenza A/H1N1 sw1 virus in the receptor-binding site of the HA1 subunit].
- Author
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L'vov DK, Burtseva EI, Prilipov AG, Bogdanova VS, Shchelkanov MIu, Bovin NV, Samokhvalov EI, Fediakina IT, Deriabin PG, Kolobukhina LV, Shtyria IuA, Shevchenko ES, Malyshev NA, Merkulova LN, Bazarova MV, Maslov AI, Ishchenko NM, Iskhakova EA, Al'khovskiĭ SV, Grebennikova TV, Sadykova GK, L'vov DN, Zhuravleva MM, Iamnikova SS, Shliapnikova OV, Poglazov AB, Trushakova SV, Lavrishcheva VV, Aristova VA, Proshina ES, Vereshchagin NN, Kuz'michev AG, Iashkulov KB, Dzhambinov SD, Bushkieva BTs, Eliseeva SM, Bystrakov SI, Sokolova IA, Dzhaparidzhe NI, Ledenev IuA, Rosolovskiĭ AP, Gareev RV, Boldyreva VV, Anan'ev VIu, Baranov NI, Gorelikov VN, Garbuz IuA, Reznik VI, Ivanov LI, Zdanovskaia NN, Sergeeva NM, Podolianko IA, Elovskiĭ OV, Gromova MA, Kalaeva EE, Grigor'ev SN, Eremeeva IuV, Dovgal' MV, Fedelesh IIu, Sakharova EA, Burtnik VI, Avdoshina LN, Shapiro NP, Maslov DV, Ianovich VA, Ott VA, and Lebedev GB
- Subjects
- Binding Sites genetics, Female, Hemagglutinin Glycoproteins, Influenza Virus metabolism, Humans, Influenza A Virus, H1N1 Subtype pathogenicity, Influenza, Human mortality, Lung virology, Male, Pneumonia, Viral mortality, Polymerase Chain Reaction, Pregnancy, Pregnancy Complications, Infectious mortality, Protein Subunits metabolism, Receptors, Virus metabolism, Russia epidemiology, Sequence Analysis, Protein, Virulence, Disease Outbreaks, Hemagglutinin Glycoproteins, Influenza Virus genetics, Influenza A Virus, H1N1 Subtype genetics, Influenza, Human epidemiology, Influenza, Human virology, Pneumonia, Viral epidemiology, Pneumonia, Viral virology, Pregnancy Complications, Infectious epidemiology, Pregnancy Complications, Infectious virology, Protein Subunits genetics
- Abstract
The paper gives the results of sequence analysis of 150 positive samples in real-time RT-PCR, including 47 autopsy materials from patients (including 10 pregnant women), who died from fatal pneumonia mainly in November-December 2009, in whom the lifetime etiological diagnosis had not been made and hence no early etiotropic therapy performed. 70% of the primary materials from the deceased patients were found to have pandemic influenza A(H1N1) v mutants in the lung tissue with D222G (15%), D222N (15%), D222E (2%) substitutions, as well as a mixture of mutants (38%). Nasopharyngeal lavages from 3 Chukotka deceased patients exhibited only consensus (nonmutant) D222 virus variants; there was a mixture of consensus and mutant virus variants in the trachea and a mixture of mutant ones in the lung. Preliminary data from the study of the interaction of the hemagglutinin of two strains having D222G and D222N mutations with 9 oligosaccharides imitating the variants of cell receptors for influenza A virus suggest that there is a double receptor specificity for alpha2'-3' and alpha2'-6'-sialosides with a preponderance of alpha2'-3'-specificity. Further spread of the mutants that have acquired a high virulence and preserved their capacity for the respiratory route of human infection may lead to the situation similar to that seen in the 1918-1919 pandemic. Another scenario for evolution of the virus is to preserve its receptor specificity for alpha2'-3'-sialosides and high virulence with losses of alpha2'-6' specificity and capacity for aerosol transmission, by damping the pandemic.
- Published
- 2010
40. [Molecular genetic characteristics of the newcastle disease virus velogenic strains isolated in Russia, Ukraine, Kazakhstan, and Kirghizia].
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Korotetskiĭ IS, Bogoiavlenskiĭ AP, Prilipov AG, Usachev EV, Usacheva OV, Turgambetova AS, Zaĭtseva IA, Kydyrmanov A, Shakhvorostova LI, Saiatov MKh, Borisov VV, Pchelkina IP, Gerilovich AP, and Berezin VE
- Subjects
- Animals, Birds virology, Genes, Viral genetics, Kazakhstan epidemiology, Kyrgyzstan epidemiology, Molecular Epidemiology, Newcastle Disease virology, Newcastle disease virus classification, Newcastle disease virus isolation & purification, Phylogeny, Russia epidemiology, Ukraine epidemiology, Newcastle Disease epidemiology, Newcastle disease virus genetics, Viral Fusion Proteins genetics
- Abstract
The F gene fragment of 79 Newcastle disease virus (NDV) strains isolated from domestic and synanthropic birds in Kazakhstan, Kirghizia, Ukraine, and Russia in 1993 to 2007 was comparatively analyzed. Phylogenetic analysis of test isolates and reference NDV strains obtained from the GenBank was carried out by polymerase chain reaction with subsequent sequencing and comparative analysis of 154-bp nucleotide sequences in the main functional region of the F gene. All newly characterized isolates belong to three NDV genotype VII subgroups: VIIa, VIIb, VIId. The results show it necessary to monitor of NDV strains isolated in the CIS countries since the spread of NDV among migratory and synanthropic birds (pigeons, crows, and jackdaws) poses a serious threat to commercial poultry industry.
- Published
- 2010
41. [Trends in the spread of pandemic influenza A(H1N1) swl in the Far East in 2009].
- Author
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Shchelkanov MIu, L'vov DN, Fediakina IT, Baranov NI, Gorelikov VN, Reznik VIa, Zdanovskaia NI, Pukhovskaia NM, Avdoshina LN, Shapiro NI, Snetkova IP, Kozhan VN, Iarovenko GM, Kalaeva EE, Gromova MA, Elovskiĭ OV, Eremeeva IuV, Dovgal' MA, Kuchenkov AA, Anan'ev VIu, Burtnik VI, Ivanov LI, Garbuz IuA, Podolianko IA, Grigor'ev SN, Proshina ES, Samokhvalov EI, Al'khovskiĭ SV, Burtseva EI, Prilipov AG, Abbasova EI, Mironenko ES, Kolobukhina LV, Deriabin PG, Ott VA, Maslov DV, Ianovich VA, and L'vov DK
- Subjects
- Animals, Antibodies, Viral blood, Cell Line, Chick Embryo, Dogs, Environmental Monitoring, Epidemiological Monitoring, Humans, Influenza A Virus, H1N1 Subtype immunology, Influenza A Virus, H1N1 Subtype isolation & purification, Influenza, Human blood, Influenza, Human diagnosis, Influenza, Human virology, Siberia epidemiology, Disease Outbreaks, Influenza A Virus, H1N1 Subtype classification, Influenza, Human epidemiology
- Abstract
The paper describes the trend in the spread of pandemic influenza A(H1N1) swl virus in the Far East, which started in this region 2-3 months later than that in the European part of Russia. By mid-October seasonal epidemic influenza was practically displaced by pandemic one.
- Published
- 2010
42. [Spread of new pandemic influenza A(H1N1)v virus in Russia].
- Author
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L'vov DK, Burtseva EI, Shchelkanov MIu, Prilipov AG, Kolobukhina LV, Malyshev NA, Bazarova MV, Merkulova LN, Deriabin PG, Kuz'michev AG, Fediakina IT, Grebennikova TV, Usachev EV, Sadykova GK, Shevchenko ES, Trushakova SV, Lavrishcheva VV, Al'khovskiĭ S, Samokhvalov EI, Beliakova NV, Ivanova VT, Oskerko TA, Latyshev OE, Beliaev AM, Beliaev AL, and Feodoritova EL
- Subjects
- Animals, Antiviral Agents pharmacology, Cell Line, Chick Embryo, Dogs, Genome, Viral genetics, Humans, Influenza, Human mortality, Influenza, Human virology, Russia epidemiology, Sequence Analysis, Protein, Disease Outbreaks, Influenza A Virus, H1N1 Subtype classification, Influenza A Virus, H1N1 Subtype drug effects, Influenza A Virus, H1N1 Subtype genetics, Influenza A Virus, H1N1 Subtype isolation & purification, Influenza, Human epidemiology
- Abstract
The paper presents the results of the investigations of the development of a influenza A(H1N1)v pandemic, conducted by the D. I. Ivanovsky Research Institute of Virology, Russian Academy of Medical Sciences, and collaborating laboratories in the European part of Russia, in the Urals, Siberia, and in the Far East. In the prepandemic period (April 27 - June 11, 2009) its first diagnosis was established on May 21, 2009; the first strain was isolated on May 24, 2009; the data on complete genome sequencing were sent to the GenBank; the sensitivity of the strain to commercial antiviral commercial agents was studied. In the early pandemic period (June 11 - August 15), 73 patients who had come from 14 countries of Europe, America, and Asia were identified; 19 virus strains (partially or completely sequenced) were isolated. The pandemic period (August 15 - December 1) was marked by absolute dominance of pandemic influenza virus virtually in the absence of seasonal influenza; the first death caused by pandemic influenza was detected in late August; 3053 subjects were infected with the pandemic strain, as shown by polymerase chain reaction diagnosis; 202 strains were identified.
- Published
- 2010
43. [Detection of amino acid substitutions of asparaginic acid for glycine and asparagine at the receptor-binding site of hemagglutinin in the variants of pandemic influenza A/H1N1 virus from patients with fatal outcome and moderate form of the disease].
- Author
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L'vov DK, Iashkulov KB, Prilipov AG, Burtseva EI, Shchelkanov MIu, Shliapnikova OV, Poglazov AB, Sadykova GK, Dzhambinov SD, Fediakina IT, Bushkieva BTs, L'vov DN, Zhuravleva MM, Al'khovskiĭ SV, Samokhvalov EI, Trushakova SV, Lavrishcheva VV, Vereshchagin NN, Mikhaliaeva LB, Darbakova TA, Limanskaia OS, Dzhaparidze NI, Imkenova LN, Ledenev IuA, Boldyreva VV, Ivanov LI, and Zdanovskaia NN
- Subjects
- Adult, Amino Acid Substitution, Asparagine genetics, Binding Sites genetics, Glycine genetics, Hemagglutinin Glycoproteins, Influenza Virus metabolism, Humans, Influenza, Human virology, Middle Aged, Molecular Epidemiology, Receptors, Virus metabolism, Russia epidemiology, Hemagglutinin Glycoproteins, Influenza Virus genetics, Influenza A Virus, H1N1 Subtype genetics, Influenza, Human epidemiology
- Abstract
The paper analyzes the amino acid sequence of the receptor-binding site of hemagglutinin (HA) in the variants of pandemic influenza A/H1N1 swl from 18 patients with moderate (n=1) and fatal (n=17) forms of the disease in 2009. Nine samples contained asparaginic acid at position 222 of HA1 (D). This site exhibited mutations in 9 samples: D222G (n=3), D222N (n=3), and D222G/D222N (n=3). In one patient with the moderate form of the disease, D222G mutation was revealed after the second passage in the developing chick embryos; this mutation was not found in the primary sample from the patient. The findings suggest the mutant variants of the virus start to circulate among the population, which requires, firstly, continuation of molecular virological monitoring of the pandemic situation and, secondly, further study of the impact of amino acid substitutions at the receptor-binding site of HA1 on the increased virulence of influenza A virus.
- Published
- 2010
44. [Search for protective antigens in Ixodes persulcatus (ixodidae) salivary gland extracts].
- Author
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Shtannikov AV, Reshetniak TV, Repolovskaia TV, Panfertsev EA, Perovskaia ON, Gutova VP, Vasil'eva IS, Ershova AS, Prilipov AG, Biketov SF, and Zeidner N
- Subjects
- Animals, Female, Gene Expression Regulation, Ixodes physiology, Lyme Disease prevention & control, Reverse Transcriptase Polymerase Chain Reaction, Vaccines, Combined genetics, Immunodominant Epitopes genetics, Ixodes genetics, Lyme Disease Vaccines genetics, Salivary Glands metabolism, Salivary Proteins and Peptides genetics
- Abstract
RT-PCR evaluation of the activity of eight Ixodes persulcatus salivary gland genes shows clear distinctions in their expression depending of the stage of tick feeding. Out of them, only Salp 10 and Salp 15 proteins may be regarded as candidates for protective antigens to develop anti-tick and anti-Borrelia vaccines. Firstly they play an important role in feeding a tick and modifying a host's immune response. Secondly, the increasing expression of the salp 10 and salp 10 genes begins at early tick feeding stages. Thirdly, the activity of these genes increases with the beginning of feeding by tens and hundreds times and keeps at this level until the third tick feeding stage is over.
- Published
- 2010
45. Evolution of highly pathogenic avian influenza H5N1 virus in natural ecosystems of northern Eurasia (2005-08).
- Author
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Lvov DK, Shchelkanov MY, Prilipov AG, Vlasov NA, Fedyakina IT, Deryabin PG, Alkhovsky SV, Grebennikova TV, Zaberezhny AD, and Suarez DL
- Subjects
- Animals, Asia epidemiology, Europe epidemiology, Influenza in Birds epidemiology, Biological Evolution, Birds, Ecosystem, Influenza A Virus, H5N1 Subtype genetics, Influenza in Birds virology
- Abstract
Fifty-four strains of H5N1 highly pathogenic avian influenza (HPAI) virus were isolated from wild birds in the ecosystems of northern Eurasia and from poultry in the south of western Siberia (July 2005), at the mouth of Volga River (November 2005), at Uvs-Nur Lake on the boundary of the Great Lakes Depression in western Mongolia and the Tyva Republic of Russia (June 2006), in the vicinity of Moscow (February 2007), in the southeastern part of the Russian Plain (September 2007 and December 2007), and in the far east (April 2008) of the Russian Federation and were phenotypically characterized and deposited into the Russian state collection of viruses. Complete genome nucleotide sequences for 24 strains were obtained and deposited into GenBank. In all cases when strains were isolated from both wild birds and poultry in the same outbreak these strains were genetically closely related to each other. Until 2008 all HPAI H5N1 strains isolated in northern Eurasia clustered genetically with the viruses from Kukunor Lake (Qinghai Province, China), known as genotype 2.2 or the "Qinghai-Siberian" genotype. The viruses from the Qinghai-Siberian genotype have continued to evolve from those initially introduced into western Siberia in 2005 into two genetic groups: "Iran-North Caucasian" and "Tyva-Siberian." In vitro replication potential (50% tissue-culture infectious dose in porcine embryo kidney) of Qinghai-Siberian strains decreased over time, which could reflect decreasing virulence. Comparison of genome sequences with biological characteristics of the respective strains permitted us to identify point mutations in PB2, PB1, PA, HA, NP, NA, M2, NS1, and NS2 that possibly influenced the level of replication potential. The HPAI H5N1 virus, which penetrated into the south of the Russian Far East in spring 2008, belonged to genotype 2.3.2.
- Published
- 2010
- Full Text
- View/download PDF
46. [The 24 May, 2009 isolation of the first A/IIV-Moscow/01/2009 (H1N1)swl strain similar to swine A(H1N1) influenza virus from the first Moscow case detected on May 21, 2009, and its deposit in the state collection of viruses (SCV No. 2452 dated May 24, 2009)].
- Author
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L'vov DK, Burtseva EI, Prilipov AG, Bazarova MV, Kolobukhina LV, Merkulova LN, Malyshev NA, Deriabin PG, Fediakina IT, Sadykova GK, Usachev EV, Shchelkanov MIu, Shevchenko ES, Trushakova SV, Ivanova VT, Beliakova NV, Oskerko TA, and Aliper TI
- Subjects
- Amino Acid Substitution, Animals, Antiviral Agents pharmacology, Cell Line, Chick Embryo, Drug Resistance, Viral, Genome, Viral, Humans, Indoles pharmacology, Influenza A Virus, H1N1 Subtype drug effects, Influenza A Virus, H1N1 Subtype genetics, Microbial Sensitivity Tests, Molecular Sequence Data, Moscow epidemiology, Neuraminidase genetics, Oseltamivir pharmacology, Ribavirin pharmacology, Rimantadine pharmacology, Travel, Viral Proteins genetics, Influenza A Virus, H1N1 Subtype isolation & purification, Influenza, Human epidemiology, Influenza, Human virology
- Abstract
The paper presents the results of the first isolation of the new influenza virus in Moscow and the Russian Federation, which was similar to the swine A/IIV-Moscow/01/2009(H1N1)swl strain isolated on May 24, 2009 from a Russian arrived in Moscow from the USA on May 19, 2009. The antigenic, biological, and molecular genetic properties of this virus were studied. The virus was isolated on MDCK and chick embryos, the hemagglutination titers being 1:8-1:16 AE; the infectious titers being 6.51g of the tissue cytopathogenic infective dose (TCID50) and 7.01g of the common infective dose (CID50). The virus was sensitive to arbidol, ribavirin, oseltamivir, and resistant to rimantadine. The complete virus genome was sequenced; the data were accepted to the Gen Bank on May 28, 2009 under GQ219584-GQ219590 and GQ202724. The significant gene substitution of neuraminidase Asp for Gly in position 451, which has been undetectable in any other strain published in the Gen Bank by the present time is unique only to A/IIV-Moscow/01/2009 (H1N1)swl. The virus has been deposited in the State Collection of Viruses, D. I. Ivanovsky Institute of Virology, Russian Academy of Medical Sciences, under No. 2452 dated May 24, 2009.
- Published
- 2009
47. [Monitoring of the sensitivity of epidemic influenza virus strains isolated in Russia to etiotropic chemical agents].
- Author
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Burtseva EI, Shevchenko ES, Beliakova NV, Oskerko TA, Kolobukhina LV, Merkulova LN, Vartanian RV, Prilipov AG, Rotanov M, and Zaplatnikov AL
- Subjects
- Disease Outbreaks, Drug Resistance, Viral genetics, Epidemiological Monitoring, Humans, Indoles pharmacology, Influenza A Virus, H1N1 Subtype genetics, Influenza A Virus, H1N1 Subtype isolation & purification, Influenza A Virus, H3N2 Subtype genetics, Influenza A Virus, H3N2 Subtype isolation & purification, Microbial Sensitivity Tests, Mutation, Oseltamivir pharmacology, Rimantadine pharmacology, Russia epidemiology, Antiviral Agents pharmacology, Environmental Monitoring, Influenza A Virus, H1N1 Subtype drug effects, Influenza A Virus, H3N2 Subtype drug effects, Influenza, Human epidemiology, Influenza, Human virology
- Abstract
The paper presents the results of studying the spectrum of influenza A and B viruses to rimantadine, arbidol, and oseltamivir and describes the methods used for these purposes for epidemiological surveillance. Different sensitivities to rimantadine were found among influenza A viruses. During the 2007-2008 season, the vast majority of influenza A(H3N2) virus strains were resistant to rimantadine (77%) while all influenza A(H1N1) virus strains preserved their resistance to this drug. The fact that the epidemic influenza A(H1N1) virus strains that carry the mutation responsible for resistance to the neuraminidase inhibitor oseltamivir (Tamiflu) circulated in the Russian Federation was first established. At the same time all the study influenza A(H1N1) virus strains preserved their susceptibility to rimantadine. The sensitivity of the epidemic strains to arbidol has been confirmed.
- Published
- 2009
48. Location of antigenic sites recognized by monoclonal antibodies in the influenza A virus nucleoprotein molecule.
- Author
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Varich NL, Kochergin-Nikitsky KS, Usachev EV, Usacheva OV, Prilipov AG, Webster RG, and Kaverin NV
- Subjects
- Amino Acid Substitution genetics, Animals, Binding Sites, Antibody, Enzyme-Linked Immunosorbent Assay, Models, Molecular, Mutagenesis, Site-Directed, Nucleocapsid Proteins, Protein Structure, Tertiary, Antibodies, Monoclonal immunology, Antibodies, Viral immunology, Epitopes, B-Lymphocyte immunology, RNA-Binding Proteins immunology, Viral Core Proteins immunology
- Abstract
The locations of amino acid positions relevant to antigenic variation in the nucleoprotein (NP) of influenza virus are not conclusively known. We analysed the antigenic structure of influenza A virus NP by introducing site-specific mutations at amino acid positions presumed to be relevant for the differentiation of strain differences by anti-NP monoclonal antibodies. Mutant proteins were expressed in a prokaryotic system and analysed by performing ELISA with monoclonal antibodies. Four amino acid residues were found to determine four different antibody-binding sites. When mapped in a 3D X-ray model of NP, the four antigenically relevant amino acid positions were found to be located in separate physical sites of the NP molecule.
- Published
- 2009
- Full Text
- View/download PDF
49. Mobile elements of an Azospirillum brasilense Sp245 85-MDa plasmid involved in replicon fusions.
- Author
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Katsy EI and Prilipov AG
- Subjects
- Amino Acid Sequence, Base Sequence, Integrases genetics, Molecular Sequence Data, Molecular Weight, Plasmids chemistry, Sequence Alignment, Azospirillum brasilense genetics, Interspersed Repetitive Sequences genetics, Plasmids genetics, Replicon genetics
- Abstract
Sequence analysis of approximately 25kb of an Azospirillum brasilense Sp245 85-MDa ( approximately 142kb) plasmid, p85, identified two novel IS elements mediating p85 fusions with a suicide plasmid vector, pJFF350. These IS elements, 1465-bp ISAzba1 and 1112-bp ISAzba3, belong to the IS256 family and to the IS5 family/IS903 group, respectively. Truncated ISAzba2 from the ISL3 family was found near one of the copies of ISAzba1 that flank pJFF350 in p85::pJFF350. As another factor potentially contributing to the known genetic plasticity of p85, a phage integrase gene was identified in this plasmid.
- Published
- 2009
- Full Text
- View/download PDF
50. Effective expression of recombinant cytotoxic protein via its attachment to a polyglutamine domain.
- Author
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Ilyinskii PO, Nurminskaya MV, Gabai VL, Prilipov AG, Usachev EV, Zakharova LG, Thoidis G, Altstein AD, and Shneider AM
- Subjects
- Animals, Cell Line, Cell Survival, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Humans, Peptides genetics, Vaccinia virus genetics, Vaccinia virus metabolism, Viral Matrix Proteins genetics, Peptides metabolism, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Viral Matrix Proteins metabolism
- Abstract
Inadvertent cytotoxicity may hinder the expression of many recombinant proteins that are of industrial or medicinal importance. Here, we show that covalent binding of the influenza A cytotoxic protein M2 to a polyglutamine domain (polyQ-M2; QM2) results in significant delay of its cytotoxic effects when compared to wild-type protein (M2wt). We also show that while expression of recombinant M2wt from A/WSN/1933 strain could not be attained in vaccinia virus (VV), polyQ-M2 was successfully expressed in this system. Moreover, we demonstrate that in cell culture, the polyQ domain is cleaved off following 48 h of expression, thus releasing free and active M2. Similarly, we show the spontaneous cleavage and polyQ release from fusion with another distinct polypeptide, green fluorescent protein (GFP). Expression of M2 from QM2 construct was more prolonged than one based on M2wt-expressing construct, markedly exceeding it at the later time points. Therefore, cell death caused by a toxic polypeptide may be suppressed via genetic fusion with polyQ, resulting in its enhanced expression, followed by slow release of the free polypeptide from the fusion. Collectively, covalent fusion with polyQ or other aggregate-forming domains presents a novel approach for industrial production of cytotoxic proteins and also holds promise for gene therapy applications.
- Published
- 2009
- Full Text
- View/download PDF
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