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The sensing response of 15-crown-5-ether functionalized polythiophene to Li+, Na+, and K+ has been investigated at the atomistic level using molecular dynamics simulations. The stability associated with all the identified binding sites has been corroborated by quantum mechanical calculations. Although the cavity of the macrocycle is not the most visited binding site, such receptor is responsible of the selective sensing response of this polythiophene derivative. PF6– counterions reduce the mobility of the alkaline cations, which do not occupy the crown ether cavity of consecutive repeating units due to electrostatic repulsions. Furthermore, the relative entropy for the “free state → bound state” has been estimated using a procedure based on the covariance matrix atom-positional fluctuations. Evaluation of the entropic contributions allow us to complete the thermodynamics scenario of binding process, which was recently initiated by calculating the enthalpies at quantum mechanical level [ Chem. Eur. J. 2009, 15, 4676]. Results indicate an entropycally driven binding preference., Peer Reviewed, Postprint (published version)

We have carried out theoretical investigation aiming at modelling the assessment of mechanisms of photoinduced processes in a recent p-type organic metal-free dye derived from the triphenylamine (P-1) structure. In the P-1 system, one uses the triphenylamine moiety as the electron donor, malononitrile as the electron acceptor, and a thiophene that plays the role of the conjugated chain. Basically, the difference between the P-1 dye and the common organic dyes used in the n-type DSSC field is the anchoring group located on the electron donor group. In a first step, DFT and TDDFT approaches have been exploited to calculate the key parameters controlling both the intramolecular charge transfer (ICT) and hole transfer rate constants in the Gurney-Gerischer-Marcus (GGM) formalism, for either a solvent-controlled adiabatic or a nonadiabatic electron transfer. These are: (i) the electronic coupling; (ii) the reorganization energies; and (iii) the variation of the Gibbs energy. The gathered results are in agreement with the experimental trends. (i) The vertical ICT excited states energy has been calculated at 2.67 eV, in perfect line with the experiment (2.65 eV). (ii) Two mechanisms can be conceived for the hole transfer and regeneration process. The first deals with the reduction of dye molecule at the excited state followed by an electron transfer from the reduced dye to the oxidized regenerator. The second implies a redox reaction between the excited dye and the oxidized regenerator, followed by an electron transfer from the cathode to the oxidized dye. (iii) Our theoretical investigation suggests that the first mechanism is dominant. Secondly, we propose structural modifications improving the TPA-based DSSCs hole transfer efficiency and we show that an additional -CN graft on the malononitrile unit combined to the functionalisation of the TPA moieties by -OMe groups (to give P-1b) should significantly improve the key parameters related to the electron injection. Indeed

Three different strategies have been followed to develop the torsional force-field parameters of the interring dihedral angles for calix[4]arene-substituted poly(thiophene)s, a family of highly sensitive ion receptors. These procedures, which are based on the rotational profiles calculated using quantum mechanical methods, differ in the complexity of the model compounds and the processing applied to the quantum mechanical energies before the fitting. The performance of the three sets of developed parameters, which are essentially compatible with the General Amber Force Field, has been evaluated by computing the potential of mean forces for the inter-ring rotation of 2,2'-bithiophene, and its substituted analog bearing a calix[4]arene group in different environments. Finally, the ability of the new sets of torsional parameters to describe a calix[4]arene-substituted poly(thiophene) in tetrahydrofuran solution has been checked using Molecular Dynamics simulations. Specifically, the molecular shape, the polymer conformation, and the effects of the Na+ ions trapped in the cavity of the receptor have been examined. Although the potential derived from unsubstituted 2,2'-bithiophene is able to reproduce the experimental free energies of the minima, the overall results indicate that the parameters derived from the analog bearing a calix[4]arene group provide the best description of the systems under study. This should be attributed to the strong constraints found in complex substituted poly(thiophene)s, which require parameterization strategies able to capture all the interactions and phenomena involved in their inter-ring rotations., Peer Reviewed, Postprint (published version)

Pour notre travail de thèse, nous avons établi une méthodologie, basée sur la DFT et sa variante dépendante du temps, qui permet l'évaluation efficace et la prédiction rapide des couleurs de différentes familles de colorants carbonylés dans différents environnements. Ainsi, nous sommes capables de fournir des valeurs théoriques très précises pour les énergies de transition des dérivés de l'anthraquinone, de la coumarine et de l'indigo ainsi que du thioindigo. Notre stratégie prend en compte aussi bien les effets de solvatation, dans le cadre d'une modélisation en continuum, que les effets du pH, sur la position de la bande d'absorption maximale du spectre UV/VIS. / The project of the Ph. D. work consists in the elaboration of a theoretical methodology able to evaluate and predict the color of organic dyes (see the List of recent publications for more details). Our methodology takes into account the solvent effects as well as the pH impact on the color of the dyes. The theoretical tools used are the Density Functional Theory (DFT, for ground-state optimization) and the Time Dependent TDDFT for excitation spectra calculations. The solvent effects are taken into account via the PCM (Polarizable continuum Model)., (DOCSC02)--FUNDP, 2008