3,318 results on '"Porritt A"'
Search Results
2. A prospective observational cohort study of covid-19 epidemiology and vaccine seroconversion in South Western Sydney, Australia, during the 2021–2022 pandemic period.
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Potter, Daniela, Diep, Jason, Munro, Colleen, Lin, Noelle, Xu, Ramon, Wong, Jeffrey, Porritt, Robert, Maley, Michael, Foo, Hong, and Makris, Angela
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- 2024
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3. Systematic KMTNet Planetary Anomaly Search. VIII. Complete Sample of 2019 Subprime Field Planets
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Jung, Youn Kil, Zang, Weicheng, Wang, Hanyue, Han, Cheongho, Gould, Andrew, Udalski, Andrzej, Albrow, Michael D., Chung, Sun-Ju, Hwang, Kyu-Ha, Ryu, Yoon-Hyun, Shin, In-Gu, Shvartzvald, Yossi, Yang, Hongjing, Yee, Jennifer C., Cha, Sang-Mok, Kim, Dong-Jin, Kim, Seung-Lee, Lee, Chung-Uk, Lee, Dong-Joo, Lee, Yongseok, Park, Byeong-Gon, Pogge, Richard W., Mróz, Przemek, Szymański, Michał K., Skowron, Jan, Poleski, Radek, Soszyński, Igor, Pietrukowicz, Paweł, Kozłowski, Szymon, Ulaczyk, Krzysztof, Rybicki, Krzysztof A., Iwanek, Patryk, Wrona, Marcin, Christie, Grant, Green, Jonathan, Hennerley, Steve, Marmont, Andrew, Mao, Shude, Maoz, Dan, McCormick, Jennie, Natusch, Tim, Penny, Matthew T., Porritt, Ian, and Zhu, Wei
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Astrophysics - Earth and Planetary Astrophysics - Abstract
We complete the publication of all microlensing planets (and ``possible planets'') identified by the uniform approach of the KMT AnomalyFinder system in the 21 KMT subprime fields during the 2019 observing season, namely KMT-2019-BLG-0298, KMT-2019-BLG-1216, KMT-2019-BLG-2783, OGLE-2019-BLG-0249, and OGLE-2019-BLG-0679 (planets), as well as OGLE-2019-BLG-0344, and KMT-2019-BLG-0304 (possible planets). The five planets have mean log mass-ratio measurements of $(-2.6,-3.6,-2.5,-2.2,-2.3)$, median mass estimates of $(1.81,0.094,1.16,7.12,3.34)\, M_{\rm Jup}$, and median distance estimates of $(6.7,2.7,5.9,6.4,5.6)\, {\rm kpc}$, respectively. The main scientific interest of these planets is that they complete the AnomalyFinder sample for 2019, which has a total of 25 planets that are likely to enter the statistical sample. We find statistical consistency with the previously published 33 planets from the 2018 AnomalyFinder analysis according to an ensemble of five tests. Of the 58 planets from 2018-2019, 23 were newly discovered by AnomalyFinder. Within statistical precision, half of all the planets have caustic crossings while half do not (as predicted by Zhu et al. 2014), an equal number of detected planets result from major-image and minor-image light-curve perturbations, and an equal number come from KMT prime fields versus subprime fields., Comment: 17 tables, 20 figures, submitted to AAS journals
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- 2023
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4. MOA-2020-BLG-208Lb: Cool Sub-Saturn Planet Within Predicted Desert
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Olmschenk, Greg, Bennett, David P., Bond, Ian A., Zang, Weicheng, Jung, Youn Kil, Yee, Jennifer C., Bachelet, Etienne, Abe, Fumio, Barry, Richard K., Bhattacharya, Aparna, Fujii, Hirosane, Fukui, Akihiko, Hirao, Yuki, Silva, Stela Ishitani, Itow, Yoshitaka, Kirikawa, Rintaro, Kondo, Iona, Koshimoto, Naoki, Matsubara, Yutaka, Matsumoto, Sho, Miyazaki, Shota, Munford, Brandon, Muraki, Yasushi, Okamura, Arisa, Ranc, Clément, Rattenbury, Nicholas J., Satoh, Yuki, Sumi, Takahiro, Suzuki, Daisuke, Toda, Taiga, Tristram, Paul J., Vandorou, Katie, Yama, Hibiki, Albrow, Michael D., Cha, Sang-Mok, Chung, Sun-Ju, Gould, Andrew, Han, Cheongho, Hwang, Kyu-Ha, Kim, Dong-Jin, Kim, Hyoun-Woo, Kim, Seung-Lee, Lee, Chung-Uk, Lee, Dong-Joo, Lee, Yongseok, Park, Byeong-Gon, Pogge, Richard W., Ryu, Yoon-Hyun, Shin, In-Gu, Shvartzvald, Yossi, Christie, Grant, Cooper, Tony, Drummond, John, Green, Jonathan, Hennerley, Steve, McCormick, Jennie, Monard, L. A. G., Natusch, Tim, Porritt, Ian, Tan, Thiam-Guan, Mao, Shude, Maoz, Dan, Penny, Matthew T., Zhu, Wei, Bozza, V., Cassan, Arnaud, Dominik, Martin, Hundertmark, Markus, Jaimes, R. Figuera, Kruszyńska, K., Rybicki, K. A., Street, R. A., Tsapras, Y., Wambsganss, Joachim, Wyrzykowski, Ł., Zieliński, P., and Rau, Gioia
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
We analyze the MOA-2020-BLG-208 gravitational microlensing event and present the discovery and characterization of a new planet, MOA-2020-BLG-208Lb, with an estimated sub-Saturn mass. With a mass ratio $q = 3.17^{+0.28}_{-0.26} \times 10^{-4}$ and a separation $s = 1.3807^{+0.0018}_{-0.0018}$, the planet lies near the peak of the mass-ratio function derived by the MOA collaboration (Suzuki et al. 2016), near the edge of expected sample sensitivity. For these estimates we provide results using two mass law priors: one assuming that all stars have an equal planet-hosting probability, and the other assuming that planets are more likely to orbit around more massive stars. In the first scenario, we estimate that the lens system is likely to be a planet of mass $m_\mathrm{planet} = 46^{+42}_{-24} \; M_\oplus$ and a host star of mass $M_\mathrm{host} = 0.43^{+0.39}_{-0.23} \; M_\odot$, located at a distance $D_L = 7.49^{+0.99}_{-1.13} \; \mathrm{kpc}$. For the second scenario, we estimate $m_\mathrm{planet} = 69^{+37}_{-34} \; M_\oplus$, $M_\mathrm{host} = 0.66^{+0.35}_{-0.32} \; M_\odot$, and $D_L = 7.81^{+0.93}_{-0.93} \; \mathrm{kpc}$. As a cool sub-Saturn-mass planet, this planet adds to a growing collection of evidence for revised planetary formation models and qualifies for inclusion in the extended MOA-II exoplanet microlensing sample.
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- 2022
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5. Performance of synthetic DAS as a function of array geometry
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Thomas Luckie and Robert Porritt
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Dynamic and structural geology ,QE500-639.5 - Abstract
Distributed Acoustic Sensing (DAS) can record acoustic wavefields at high sampling rates and with dense spatial resolution difficult to achieve with seismometers. Using optical scattering induced by cable deformation, DAS can record strain fields with ones of meters spatial resolution. However, many experiments utilizing DAS have relied on unused, dark telecommunication fibers. As a result, the geophysical community has not fully explored DAS survey parameters to characterize the ideal array design. This limits our understanding of guiding principles in array design to deploy DAS effectively and efficiently in the field. A better quantitative understanding of DAS array behavior can help improve the quality of the data recorded by guiding the DAS array design. Here we use array response functions as well as beamforming and back-projection results from forward modelling calculations to assess the performance of varying DAS array geometries to record regional and local sources. A regular heptagon DAS array demonstrated improved capabilities for recording regional sources over segmented linear arrays, with potential improvements in recording and locating local sources. These results reveal DAS array performance as a function of geometry and can guide future DAS deployments.
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- 2024
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6. Reflexology specific guidance for using the template for the intervention description and replication (TIDieR): A delphi study
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James, Jacqueline, Costello, Joseph T., Edwards-Price, Sally, Smith, Tracey, McAuley, Amanda, Scott, Barbara E., Dimitrakoulas, Spyridon, Edwards, Marcia, Kelly, Dorothy, Wayte, David L., Porritt, Andrea F., and Drahota, Amy K.
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- 2024
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7. Dynamic composite hydrogels of gelatin methacryloyl (GelMA) with supramolecular fibers for tissue engineering applications
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Chalard, Anaïs E., Porritt, Harrison, Lam Po Tang, Emily J., Taberner, Andrew J., Winbo, Annika, Ahmad, Amatul M., Fitremann, Juliette, and Malmström, Jenny
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- 2024
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8. Systematic reviews of qualitative evidence
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Lockwood, Craig, primary, Porritt, Kylie, additional, Munn, Zachary, additional, Rittenmeyer, Leslie, additional, Salmond, Susan, additional, Bjerrum, Merete, additional, Loveday, Heather, additional, Carrier, Judith, additional, and Stannard, Daphne, additional
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- 2024
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9. Long-term cardiovascular inflammation and fibrosis in a murine model of vasculitis induced by Lactobacillus casei cell wall extract
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Ana Paula Lombardi Pereira, Emily Aubuchon, Debbie P. Moreira, Malcolm Lane, Thacyana T. Carvalho, Thassio R. R. Mesquita, Youngho Lee, Timothy R. Crother, Rebecca A. Porritt, Waldiceu A. Verri, Magali Noval Rivas, and Moshe Arditi
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abdominal aorta dilations ,aortitis ,coronary artery aneurysms ,fibrosis ,Kawasaki disease ,long-term inflammation ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundKawasaki disease (KD), an acute febrile illness and systemic vasculitis, is the leading cause of acquired heart disease in children in industrialized countries. KD leads to the development of coronary artery aneurysms (CAA) in affected children, which may persist for months and even years after the acute phase of the disease. There is an unmet need to characterize the immune and pathological mechanisms of the long-term complications of KD.MethodsWe examined cardiovascular complications in the Lactobacillus casei cell wall extract (LCWE) mouse model of KD-like vasculitis over 4 months. The long-term immune, pathological, and functional changes occurring in cardiovascular lesions were characterized by histological examination, flow cytometric analysis, immunofluorescent staining of cardiovascular tissues, and transthoracic echocardiogram.ResultsCAA and abdominal aorta dilations were detected up to 16 weeks following LCWE injection and initiation of acute vasculitis. We observed alterations in the composition of circulating immune cell profiles, such as increased monocyte frequencies in the acute phase of the disease and higher counts of neutrophils. We determined a positive correlation between circulating neutrophil and inflammatory monocyte counts and the severity of cardiovascular lesions early after LCWE injection. LCWE-induced KD-like vasculitis was associated with myocarditis and myocardial dysfunction, characterized by diminished ejection fraction and left ventricular remodeling, which worsened over time. We observed extensive fibrosis within the inflamed cardiac tissue early in the disease and myocardial fibrosis in later stages.ConclusionOur findings indicate that increased circulating neutrophil counts in the acute phase are a reliable predictor of cardiovascular inflammation severity in LCWE-injected mice. Furthermore, long-term cardiac complications stemming from inflammatory cell infiltrations in the aortic root and coronary arteries, myocardial dysfunction, and myocardial fibrosis persist over long periods and are still detected up to 16 weeks after LCWE injection.
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- 2024
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10. Perspectives on the Initial Adoption of Multitiered Systems of Support for Behavior
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Lloyd, Blair P., Carter, Erik W., Shuster, Brooke C., Axelroth, Tara L., Davis, A. Dia, Hine, Melissa C., Porritt, Marilynn M., Haynes, Rebecca L., Fareed, Sunya A., and Slaughter, James C.
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Although the number of U.S. schools implementing multitiered systems of support for behavior (MTSS-B) continues to grow, most schools have still not adopted these evidence-based frameworks. We examined the views of educators (N = 561) at the outset of adopting MTSS-B in their schools or districts. Our survey addressed the (a) reasons schools and districts decided to adopt MTSS-B, (b) challenges they anticipated with respect to implementation, and (c) expected outcomes of MTSS-B. We also compared views across three groups of stakeholders: local school team members, building administrators, and district representatives. Although most participants reported multiple motivations for adopting MTSS-B, concerns about student behavior and the need for staff support in this area were among the primary reasons. Anticipated challenges varied by group, with district representatives affirming those challenges most strongly. Responses also suggest these stakeholders have high expectations regarding the impact of MTSS-B in their school or district. We discuss implications for technical assistance providers related to supporting a more widespread adoption of MTSS-B.
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- 2023
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11. Apoptotic stress causes mtDNA release during senescence and drives the SASP
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Victorelli, Stella, Salmonowicz, Hanna, Chapman, James, Martini, Helene, Vizioli, Maria Grazia, Riley, Joel S., Cloix, Catherine, Hall-Younger, Ella, Machado Espindola-Netto, Jair, Jurk, Diana, Lagnado, Anthony B., Sales Gomez, Lilian, Farr, Joshua N., Saul, Dominik, Reed, Rebecca, Kelly, George, Eppard, Madeline, Greaves, Laura C., Dou, Zhixun, Pirius, Nicholas, Szczepanowska, Karolina, Porritt, Rebecca A., Huang, Huijie, Huang, Timothy Y., Mann, Derek A., Masuda, Claudio Akio, Khosla, Sundeep, Dai, Haiming, Kaufmann, Scott H., Zacharioudakis, Emmanouil, Gavathiotis, Evripidis, LeBrasseur, Nathan K., Lei, Xue, Sainz, Alva G., Korolchuk, Viktor I., Adams, Peter D., Shadel, Gerald S., Tait, Stephen W. G., and Passos, João F.
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- 2023
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12. Spatial mapping of cellular senescence: emerging challenges and opportunities
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Gurkar, Aditi U., Gerencser, Akos A., Mora, Ana L., Nelson, Andrew C., Zhang, Anru R., Lagnado, Anthony B., Enninful, Archibald, Benz, Christopher, Furman, David, Beaulieu, Delphine, Jurk, Diana, Thompson, Elizabeth L., Wu, Fei, Rodriguez, Fernanda, Barthel, Grant, Chen, Hao, Phatnani, Hemali, Heckenbach, Indra, Chuang, Jeffrey H., Horrell, Jeremy, Petrescu, Joana, Alder, Jonathan K., Lee, Jun Hee, Niedernhofer, Laura J., Kumar, Manoj, Königshoff, Melanie, Bueno, Marta, Sokka, Miiko, Scheibye-Knudsen, Morten, Neretti, Nicola, Eickelberg, Oliver, Adams, Peter D., Hu, Qianjiang, Zhu, Quan, Porritt, Rebecca A., Dong, Runze, Peters, Samuel, Victorelli, Stella, Pengo, Thomas, Khaliullin, Timur, Suryadevara, Vidyani, Fu, Xiaonan, Bar-Joseph, Ziv, Ji, Zhicheng, and Passos, João F.
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- 2023
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13. Character sums over products of prime polynomials
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Porritt, Samuel
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Mathematics - Number Theory - Abstract
We study sums of Dirichlet characters over polynomials in $\mathbb{F}_q[t]$ with a prescribed number of irreducible factors. Our main results are explicit formulae for these sums in terms of zeros of Dirichlet L-functions. We also exhibit new phenomena concerning Chebyshev-type biases of such sums when the number of irreducible factors is very large., Comment: 14 pages
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- 2020
14. The CALM trial protocol: a randomised controlled trial of a guided self-help cognitive behavioural therapy intervention to reduce dental anxiety in children
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Marshman, Zoe, Rodd, Helen, Fairhurst, Caroline, Porritt, Jenny, Dawett, Bhupinder, Day, Peter, Innes, Nicola, Vernazza, Christopher, Newton, Tim, Ronaldson, Sarah, Cross, Liz, Ross, Jennie, Baker, Sarah R., Hewitt, Catherine, Torgerson, David, and Ainsworth, Hannah
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- 2023
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15. Autophagy-mitophagy induction attenuates cardiovascular inflammation in a murine model of Kawasaki disease vasculitis.
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Marek-Iannucci, Stefanie, Ozdemir, Asli B, Moreira, Debbie, Gomez, Angela C, Lane, Malcolm, Porritt, Rebecca A, Lee, Youngho, Shimada, Kenichi, Abe, Masanori, Stotland, Aleksandr, Zemmour, David, Parker, Sarah, Sanchez-Lopez, Elsa, Van Eyk, Jennifer, Gottlieb, Roberta A, Fishbein, Michael C, Karin, Michael, Crother, Timothy R, Rivas, Magali Noval, and Arditi, Moshe
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Inflammation ,Innate immunity ,Vascular Biology ,Vasculitis ,Heart Disease ,Cardiovascular ,Autoimmune Disease ,2.1 Biological and endogenous factors ,5.1 Pharmaceuticals - Abstract
Kawasaki disease (KD) is the leading cause of acquired heart disease among children. Murine and human data suggest that the NLRP3-IL-1β pathway is the main driver of KD pathophysiology. NLRP3 can be activated during defective autophagy/mitophagy. We used the Lactobacillus casei cell wall extract (LCWE) murine model of KD vasculitis to examine the role of autophagy/mitophagy on cardiovascular lesion development. LCWE-injected mice had impaired autophagy/mitophagy and increased levels of ROS in cardiovascular lesions, together with increased systemic 8-OHdG release. Enhanced autophagic flux significantly reduced cardiovascular lesions in LCWE-injected mice, whereas autophagy blockade increased inflammation. Vascular smooth muscle cell-specific deletion of Atg16l1 and global Parkin-/- significantly increased disease formation, supporting the importance of autophagy/mitophagy in this model. Ogg1-/- mice had significantly increased lesions with increased NLRP3 activity, whereas treatment with MitoQ reduced vascular tissue inflammation, ROS production, and systemic 8-OHdG release. Treatment with MN58b or Metformin (increasing AMPK and reducing ROS) resulted in decreased cardiovascular lesions. Our results demonstrate that impaired autophagy/mitophagy and ROS-dependent damage exacerbate the development of murine KD vasculitis. This pathway can be efficiently targeted to reduce disease severity. These findings enhance our understanding of KD pathogenesis and identify potentially novel therapeutic avenues for KD treatment.
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- 2021
16. A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro
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Cheng, Mary Hongying, Porritt, Rebecca A, Rivas, Magali Noval, Krieger, James M, Ozdemir, Asli Beyza, Garcia, Gustavo, Arumugaswami, Vaithilingaraja, Fries, Bettina C, Arditi, Moshe, and Bahar, Ivet
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Biological Sciences ,Pneumonia ,Immunization ,Infectious Diseases ,Prevention ,Emerging Infectious Diseases ,Biotechnology ,Vaccine Related ,Biodefense ,Lung ,Antibodies ,Monoclonal ,COVID-19 ,Enterotoxins ,Humans ,SARS-CoV-2 ,Spike Glycoprotein ,Coronavirus ,Superantigens ,Systemic Inflammatory Response Syndrome ,6D3 ,MIS-C ,TMPRSS2 ,cytokine storm ,furin-cleavage site ,neutralizing antibodies ,staphylococcal enterotoxin B ,superantigen ,viral entry ,Chemical Sciences ,Information and Computing Sciences ,Biophysics ,Biological sciences ,Chemical sciences - Abstract
We recently discovered a superantigen-like motif sequentially and structurally similar to a staphylococcal enterotoxin B (SEB) segment, near the S1/S2 cleavage site of the SARS-CoV-2 spike protein, which might explain the multisystem inflammatory syndrome (MIS-C) observed in children and the cytokine storm in severe COVID-19 patients. We show here that an anti-SEB monoclonal antibody (mAb), 6D3, can bind this viral motif at its polybasic (PRRA) insert to inhibit infection in live virus assays. The overlap between the superantigenic site of the spike and its proteolytic cleavage site suggests that the mAb prevents viral entry by interfering with the proteolytic activity of cell proteases (furin and TMPRSS2). The high affinity of 6D3 for this site originates from a polyacidic segment at its heavy chain CDR2. The study points to the potential utility of 6D3 for possibly treating COVID-19, MIS-C, or common colds caused by human coronaviruses that also possess a furin-like cleavage site.
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- 2021
17. Implementing GRADE in systematic reviews that adhere to JBI methodological conduct
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Stern, Cindy, Munn, Zachary, Barker, Timothy H., Porritt, Kylie, Stone, Jennifer C., Pap, Robin, Khalil, Hanan, and Aromataris, Edoardo
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- 2024
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18. "Tangible things" : Susan Howe's interdisciplinary materials and complex kinships : five sequences
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Porritt, Betsy, Smith, Simon, and Virtanen, Juha
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PR English literature - Abstract
This thesis uses Susan Howe's poetry, visual art and sound collaborations as a leaping-off point for my own explorations in poetry. "Tangible Things" takes as its starting point the materiality of Howe's work and examines it in the context of post-war capitalism and Neo-colonialism. The research asks, what can reading poetry through the lens of materials teach us about the conditions in which language is produced? The five following sequences are my own experiments in making visible networks of kinship, power and narrative hierarchy from the position of a feminist living and working in late-capitalist society. These interlocking poems provide spaces in which to address, re-think and make poetry with, the multi-layered voices that structure the present.
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- 2021
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19. School leaders who coach : exploring the effect of coaching on their leadership, learning, self-efficacy and professional agency
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Porritt, David
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371.2 - Abstract
This interpretive, mixed-methods research explores the experiences of school leaders who coach. Located within International and UK Schools, it uncovers the effect that being a coach has on school leaders' leadership, learning, self-efficacy and professional agency. The topic is approached through a framework of Bandura's self-efficacy and agency theory, critically exploring the coaching experiences of school leaders and a small sample of leaders working in adult learning settings. Fieldwork includes a two-part online survey blended with twenty-one semi-structured, in-depth interviews. Findings reveal that along with elevated levels of self-awareness, school leaders who coach experience the benefits of generativity, coupled with increased knowledge, understanding and skills in coaching and leadership. Furthermore, leaders develop increasingly patient listening, more profound reflexivity, increased abilities in posing resonant and relevant questions, enhanced attentiveness to others' needs, greater empathy in building rapport and trust, and the capacity to develop emotionally safe environments in which colleagues can develop. Coaching appears to contribute to the leaders increased levels of self-efficacy belief, which acts as both a catalyst and a reinforcing mechanism for their agency. The thesis addresses a gap in research by exploring coaching in schools from the perspective of the coach, noting that there is little or no difference between the experiences of school leaders who coach and the sample of leaders who work in adult learning environments. The research advances the argument for school leaders to develop and use coaching skills in their work with colleagues. Using coaching as a tool to support the development of others, appears to sustain leaders who coach in their leadership and mitigates the pressures and challenges of their professional work. The thesis concludes with suggestions for an increase in knowledge, understanding and skill development of coaching and a wider uptake by school leaders.
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- 2021
20. Developing a Consistent Travel-Time Framework for Comparing Three-Dimensional Velocity Models for Seismic Location Accuracy
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Begnaud, Michael L., Davenport, Kathy, Conley, Andrea, Ballard, Sanford, Hipp, James, and Porritt, Robert W.
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- 2023
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21. Dementia care behind prison walls: A descriptive study understanding nurse’s knowledge and educational needs
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Gaston, Sherryl, Porritt, Kylie, and Jordan, Zoe
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- 2023
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22. OGLE-2013-BLG-0911Lb: A Secondary on the Brown-Dwarf Planet Boundary around an M-dwarf
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Miyazaki, Shota, Sumi, Takahiro, Bennett, David P., Udalski, Andrzej, Shvartzvald, Yossi, Street, Rachel, Bozza, Valerio, Yee, Jennifer C., Bond, Ian A., Rattenbury, Nicholas, Koshimoto, Naoki, Suzuki, Daisuke, Fukui, Akihiko, Abe, F., Bhattacharya, A., Barry, R., Donachie, M., Fujii, H., Hirao, Y., Itow, Y., Kamei, Y., Kondo, I., Li, M. C. A., Ling, C. H., Matsubara, Y., Matsuo, T., Muraki, Y., Nagakane, M., Ohnishi, K., Ranc, C., Saito, T., Sharan, A., Shibai, H., Suematsu, H., Sullivan, D. J., Tristram, P. J., Yamakawa, T., Yonehara, A., Skowron, J., Poleski, R., Mr'oz, P., Szyma'nski, M. K., Soszy'nski, I., Pietrukowicz, P., KozLowski, S., Ulaczyk, K., Wyrzykowski, L., Friedmann, Matan, Kaspi, Shai, Maoz, Dan, Albrow, M., Christie, G., DePoy, D. L., Gal-Yam, A., Gould, A., Lee, C. -U., Manulis, I., McCormick, J., Natusch, T., Ngan, H., Pogge, R. W., Porritt, I., Tsapras, Y., Bachelet, E., Hundertmark, M. P. G., Dominik, M., Bramich, D. M., Cassan, A., Jaimes, R. Figuera, Horne, K., Schmidt, R., Snodgrass, C., Wambsganss, J., Steele, I. A., Menzies, J., Mao, S., Jorgensen, U. G., Burgdorf, M. J., Ciceri, S., Novati, S. Calchi, D'Ago, G., Evans, D. F., Hinse, T. C., Kains, N., Kerins, E., Korhonen, H., Mancini, L., Popovas, A., Rabus, M., Rahvar, S., Scarpetta, G., Skottfelt, J., Southworth, J., Peixinho, N., and Verma, P.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Astrophysics of Galaxies ,Astrophysics - Solar and Stellar Astrophysics - Abstract
We present the analysis of the binary-lens microlensing event OGLE-2013-BLG-0911. The best-fit solutions indicate the binary mass ratio of q~0.03 which differs from that reported in Shvartzvald+2016. The event suffers from the well-known close/wide degeneracy, resulting in two groups of solutions for the projected separation normalized by the Einstein radius of s~0.15 or s~7. The finite source and the parallax observations allow us to measure the lens physical parameters. The lens system is an M-dwarf orbited by a massive Jupiter companion at very close (M_{host}=0.30^{+0.08}_{-0.06} M_{Sun}, M_{comp}=10.1^{+2.9}_{-2.2} M_{Jup}, a_{exp}=0.40^{+0.05}_{-0.04} au) or wide (M_{host}=0.28^{+0.10}_{-0.08} M_{Sun}, M_{comp}=9.9^{+3.8}_{-3.5}M_{Jup}, a_{exp}=18.0^{+3.2}_{-3.2} au) separation. Although the mass ratio is slightly above the planet-brown dwarf (BD) mass-ratio boundary of q=0.03 which is generally used, the median physical mass of the companion is slightly below the planet-BD mass boundary of 13M_{Jup}. It is likely that the formation mechanisms for BDs and planets are different and the objects near the boundaries could have been formed by either mechanism. It is important to probe the distribution of such companions with masses of ~13M_{Jup} in order to statistically constrain the formation theories for both BDs and massive planets. In particular, the microlensing method is able to probe the distribution around low-mass M-dwarfs and even BDs which is challenging for other exoplanet detection methods., Comment: 22 pages, 10 figures, Accepted for publication in The Astronomical Journal
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- 2019
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23. On the long cycle variability of the Algol OGLE-LMC-DPV-065 and its stellar, orbital and disk parameters
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Mennickent, R. E., Cabezas, M., Djurašević, G., Rivinius, T., Hadrava, P., Poleski, R., Kołaczkowski, Z., Soszyński, I., Celedón, L., Astudillo-Defru, N., Raj, A., Fernández-Trincado, J. G., Schmidtobreick, L., Tappert, C., Neustroev, V., and Porritt, I.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
OGLE-LMC-DPV-065 is an interacting binary whose double-hump long photometric cycle remains hitherto unexplained. We analyze photometric time series available in archive datasets spanning 124 years and present the analysis of new high-resolution spectra. A refined orbital period is found of 10\fd0316267 $\pm$ 0\fd0000056 without any evidence of variability. In spite of this constancy, small but significant changes in timings of the secondary eclipse are detected. We show that the long period continuously decreases from 350 to 218 days during 13 years, then remains almost constant for about 10 years. Our study of radial velocities indicates a circular orbit for the binary and yields a mass ratio of 0.203 $\pm$ 0.001. From the analysis of the orbital light curve we find that the system contains 13.8 and 2.81 \msun\ stars of radii 8.8 and 12.6 \rsun\ and absolute bolometric magnitudes -6.4 and -3.0, respectively. The orbit semi-major axis is 49.9 \rsun\ and the stellar temperatures are 25460 K and 9825 K. We find evidence for an optically and geometrically thick disk around the hotter star. According to our model, the disk has a radius of 25 \rsun, central and outer vertical thickness of 1.6 \rsun\ and 3.5 \rsun, and temperature of 9380 K at its outer edge. Two shock regions located at roughly opposite parts of the outer disk rim can explain the light curves asymmetries. The system is a member of the double periodic variables and its relatively high-mass and long photometric cycle make it similar in some aspects to $\beta$ Lyrae., Comment: Accepted for publication in MNRAS main journal
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- 2019
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24. OGLE-2017-BLG-1186: first application of asteroseismology and Gaussian processes to microlensing
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Li, Shun-Sheng, Zang, Weicheng, Udalski, Andrzej, Shvartzvald, Yossi, Huber, Daniel, Lee, Chung-Uk, Sumi, Takahiro, Gould, Andrew, Mao, Shude, Fouqué, Pascal, Wang, Tianshu, Dong, Subo, Jørgensen, Uffe G., Cole, Andrew, Mróz, Przemek, Szymański, Michał K., Skowron, Jan, Poleski, Radosław, Soszyński, Igor, Pietrukowicz, Paweł, Kozłowski, Szymon, Ulaczyk, Krzysztof, Rybicki, Krzysztof A., Iwanek, Patryk, Yee, Jennifer C., Novati, Sebastiano Calchi, Beichman, Charles A., Bryden, Geoffery, Carey, Sean, Gaudi, B. Scott, Henderson, Calen B., Zhu, Wei, Albrow, Michael D., Chung, Sun-Ju, Han, Cheongho, Hwang, Kyu-Ha, Jung, Youn Kil, Ryu, Yoon-Hyun, Shin, In-Gu, Cha, Sang-Mok, Kim, Dong-Jin, Kim, Hyoun-Woo, Kim, Seung-Lee, Lee, Dong-Joo, Lee, Yongseok, Park, Byeong-Gon, Pogge, Richard W., Bond, Ian A., Abe, Fumio, Barry, Richard, Bennett, David P., Bhattacharya, Aparna, Donachie, Martin, Fukui, Akihiko, Hirao, Yuki, Itow, Yoshitaka, Kondo, Iona, Koshimoto, Naoki, Li, Man Cheung Alex, Matsubara, Yutaka, Muraki, Yasushi, Miyazaki, Shota, Nagakane, Masayuki, Ranc, Clément, Rattenbury, Nicholas J., Suematsu, Haruno, Sullivan, Denis J., Suzuki, Daisuke, Tristram, Paul J., Yonehara, Atsunori, Christie, Grant, Drummond, John, Green, Jonathan, Hennerley, Steve, Natusch, Tim, Porritt, Ian, Bachelet, Etienne, Maoz, Dan, Street, Rachel A., Tsapras, Yiannis, Bozza, Valerio, Dominik, Martin, Hundertmark, Markus, Peixinho, Nuno, Sajadian, Sedighe, Burgdorf, Martin J., Evans, Daniel F., Jaimes, Roberto Figuera, Fujii, Yuri I., Haikala, Lauri K., Helling, Christiane, Henning, Thomas, Hinse, Tobias C., Mancini, Luigi, Longa-Peña, Penelope, Rahvar, Sohrab, Rabus, Markus, Skottfelt, Jesper, Snodgrass, Colin, Southworth, John, Unda-Sanzana, Eduardo, von Essen, Carolina, Beaulieu, Jean-Phillipe, Blackman, Joshua, and Hill, Kym
- Subjects
Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Earth and Planetary Astrophysics - Abstract
We present the analysis of the event OGLE-2017-BLG-1186 from the 2017 Spitzer microlensing campaign. This is a remarkable microlensing event because its source is photometrically bright and variable, which makes it possible to perform an asteroseismic analysis using ground-based data. We find that the source star is an oscillating red giant with average timescale of $\sim 9$ d. The asteroseismic analysis also provides us source properties including the source angular size ($\sim 27~\mu{\rm as}$) and distance ($\sim 11.5$ kpc), which are essential for inferring the properties of the lens. When fitting the light curve, we test the feasibility of Gaussian Processes (GPs) in handling the correlated noise caused by the variable source. We find that the parameters from the GP model are generally more loosely constrained than those from the traditional $\chi^2$ minimization method. We note that this event is the first microlensing system for which asteroseismology and GPs have been used to account for the variable source. With both finite-source effect and microlens parallax measured, we find that the lens is likely a $\sim 0.045~M_{\odot}$ brown dwarf at distance $\sim 9.0$ kpc, or a $\sim 0.073~M_{\odot}$ ultracool dwarf at distance $\sim 9.8$ kpc. Combining the estimated lens properties with a Bayesian analysis using a Galactic model, we find a $\sim 35$ per cent probability for the lens to be a bulge object and $\sim 65$ per cent to be a background disc object., Comment: 18 pages, 4 figures, 5 tables. Revised to match version published in MNRAS
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- 2019
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25. Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation
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Cheng, Mary Hongying, Zhang, She, Porritt, Rebecca A, Noval Rivas, Magali, Paschold, Lisa, Willscher, Edith, Binder, Mascha, Arditi, Moshe, and Bahar, Ivet
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Medical Microbiology ,Biomedical and Clinical Sciences ,Biological Sciences ,Vaccine Related ,Pneumonia & Influenza ,Emerging Infectious Diseases ,Biodefense ,Lung ,Pneumonia ,Prevention ,Infectious Diseases ,2.1 Biological and endogenous factors ,Aetiology ,Inflammatory and immune system ,Amino Acid Motifs ,Betacoronavirus ,COVID-19 ,Coronavirus Infections ,Enterotoxins ,Epitopes ,T-Lymphocyte ,Humans ,Intercellular Adhesion Molecule-1 ,Models ,Molecular ,Mutation ,Neurotoxins ,Pandemics ,Pneumonia ,Viral ,Protein Binding ,Receptors ,Antigen ,T-Cell ,SARS-CoV-2 ,Spike Glycoprotein ,Coronavirus ,Superantigens ,Systemic Inflammatory Response Syndrome ,superantigen ,SARS-CoV-2 spike ,toxic shock syndrome ,TCR binding - Abstract
Multisystem Inflammatory Syndrome in Children (MIS-C) associated with COVID-19 is a newly recognized condition in children with recent severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. These children and adult patients with severe hyperinflammation present with a constellation of symptoms that strongly resemble toxic shock syndrome, an escalation of the cytotoxic adaptive immune response triggered upon the binding of pathogenic superantigens to T cell receptors (TCRs) and/or major histocompatibility complex class II (MHCII) molecules. Here, using structure-based computational models, we demonstrate that the SARS-CoV-2 spike (S) glycoprotein exhibits a high-affinity motif for binding TCRs, and may form a ternary complex with MHCII. The binding epitope on S harbors a sequence motif unique to SARS-CoV-2 (not present in other SARS-related coronaviruses), which is highly similar in both sequence and structure to the bacterial superantigen staphylococcal enterotoxin B. This interaction between the virus and human T cells could be strengthened by a rare mutation (D839Y/N/E) from a European strain of SARS-CoV-2. Furthermore, the interfacial region includes selected residues from an intercellular adhesion molecule (ICAM)-like motif shared between the SARS viruses from the 2003 and 2019 pandemics. A neurotoxin-like sequence motif on the receptor-binding domain also exhibits a high tendency to bind TCRs. Analysis of the TCR repertoire in adult COVID-19 patients demonstrates that those with severe hyperinflammatory disease exhibit TCR skewing consistent with superantigen activation. These data suggest that SARS-CoV-2 S may act as a superantigen to trigger the development of MIS-C as well as cytokine storm in adult COVID-19 patients, with important implications for the development of therapeutic approaches.
- Published
- 2020
26. Loss of testosterone impairs anti-tumor neutrophil function.
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Markman, Janet L, Porritt, Rebecca A, Wakita, Daiko, Lane, Malcolm E, Martinon, Daisy, Noval Rivas, Magali, Luu, Michael, Posadas, Edwin M, Crother, Timothy R, and Arditi, Moshe
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Lung ,Prostate ,Neutrophils ,Bone Marrow ,Animals ,Mice ,Inbred C57BL ,Mice ,Knockout ,Mice ,Melanoma ,Prostatic Neoplasms ,Disease Models ,Animal ,Testosterone ,Androgen Antagonists ,Antineoplastic Agents ,Androgens ,Hormone Replacement Therapy ,Bone Marrow Transplantation ,Female ,Male - Abstract
In men, the incidence of melanoma rises rapidly after age 50, and nearly two thirds of melanoma deaths are male. The immune system is known to play a key role in controlling the growth and spread of malignancies, but whether age- and sex-dependent changes in immune cell function account for this effect remains unknown. Here, we show that in castrated male mice, neutrophil maturation and function are impaired, leading to elevated metastatic burden in two models of melanoma. Replacement of testosterone effectively normalized the tumor burden in castrated male mice. Further, the aberrant neutrophil phenotype was also observed in prostate cancer patients receiving androgen deprivation therapy, highlighting the evolutionary conservation and clinical relevance of the phenotype. Taken together, these results provide a better understanding of the role of androgen signaling in neutrophil function and the impact of this biology on immune control of malignancies.
- Published
- 2020
27. Can Governance Be Ethical if It Is Not Diverse?
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Porritt, Vivienne and Stagg, Fee
- Abstract
There is growing acceptance that governing boards in English schools and academies should be diverse. Yet progress towards this strategic aim remains slow despite initiatives to address this. We ask whether boards represent their communities and whether they model diverse and ethical leadership as seen in the culture and values of a school or trust and through recruitment and we argue that governance cannot be ethical if it is not diverse. Our thinking about the question at the heart of this paper is influenced by ethical leadership as well as the Black Lives Matter movement. We draw on two diverse boards, one a maintained governing board for a primary school and the other a Multi-Academy Trust board, to support our opinion and thank them for sharing their challenges and successes. We suggest ways forward to deliberately disrupt the status quo and ensure governing boards represent the students in their communities.
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- 2022
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28. Providing a scaffold for considering theoretical frameworks in evidence implementation projects: the JBI approach to evidence implementation
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Munn, Zachary, McArthur, Alexa, Klugar, Miloslav, Stannard, Daphne, Cooper, Adam S., Enuameh, Yeetey, and Porritt, Kylie
- Published
- 2023
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29. Action on the social determinants for advancing health equity in the time of COVID-19: perspectives of actors engaged in a WHO Special Initiative
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Orielle Solar, Nicole Valentine, Antia Castedo, Gonzalo Soto Brandt, Jaitra Sathyandran, Zahra Ahmed, Paul Cheh, Emma Callon, Felicity Porritt, Isabel Espinosa, Kira Fortune, Shogo Kubota, Elizabeth Elliott, April Joy David, Maryam Bigdeli, Hafid Hachri, Patrick Bodenmann, Kevin Morisod, Molly Biehl, Devaki Nambiar, Carmel Williams, Jessica Allen, Peter Goldblatt, Erika Placella, Michael Marmot, and Kumanan Rasanathan
- Subjects
Social determinants of health ,Health equity ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Since the 2008 publication of the reports of the Commission on Social Determinants of Health and its nine knowledge networks, substantial research has been undertaken to document and describe health inequities. The COVID-19 pandemic has underscored the need for a deeper understanding of, and broader action on, the social determinants of health. Building on this unique and critical opportunity, the World Health Organization is steering a multi-country Initiative to reduce health inequities through an action-learning process in ‘Pathfinder’ countries. The Initiative aims to develop replicable and reliable models and practices that can be adopted by WHO offices and UN staff to address the social determinants of health to advance health equity. This paper provides an overview of the Initiative by describing its broad theory of change and work undertaken in three regions and six Pathfinder countries in its first year-and-a-half. Participants engaged in the Initiative describe results of early country dialogues and promising entry points for implementation that involve model, network and capacity building. The insights communicated through this note from the field will be of interest for others aiming to advance health equity through taking action on the social determinants of health, in particular as regards structural determinants.
- Published
- 2023
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30. Exploring nursing students’ understanding and experiences of academic resilience. A qualitative study
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Lees, Carolyn, Keane, Pauline, Porritt, Bridget, and Cleary, John Paul
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- 2023
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31. Some topics in the analytic number theory of polynomials over a finite field
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Porritt, Sam
- Subjects
512 - Abstract
There are striking similarities between the ring of integers and the ring of polynomials in one variable over a finite field. This thesis explores some of these similarities from an analytic number theoretic perspective. It develops a polynomial analogue of techniques for extracting number theoretic information from analytic functions known as the Selberg--Delange method. A motivating problem for the original development of this theory was the problem of counting integers with a prescribed number of prime factors. After presenting the theory in the context of counting polynomials with a prescribed number of prime factors in arithmetic progressions and short intervals, a refined version of the method is presented to study some related quantities in more detail. This work has applications to the study of so-called prime number races questions for polynomials with a prescribed number of prime factors. As a prelude to this work on the Selberg--Delange method, an application from the integer version is given. It concerns the distribution of the values of ω(n), the number of prime divisors of n, in different residue classes. We also prove some results concerning the existence and number of prime polynomials whose coefficients satisfy certain conditions. These can be compared with results about the existence and number of prime numbers whose digits satisfy certain conditions. In particular, we study prime polynomials whose coefficients are restricted to a given subset of the underlying finite field and those whose coefficients satisfy a given linear equation. These results make use of additive characters and as prelude to them, a result concerning the correlation of the polynomial analogue of the exponential function with the multiplicative Möbius function is presented.
- Published
- 2020
32. Platelets exacerbate cardiovascular inflammation in a murine model of Kawasaki disease vasculitis
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Begüm Kocatürk, Youngho Lee, Nobuyuki Nosaka, Masanori Abe, Daisy Martinon, Malcolm E. Lane, Debbie Moreira, Shuang Chen, Michael C. Fishbein, Rebecca A. Porritt, Bernardo S. Franklin, Magali Noval Rivas, and Moshe Arditi
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Medicine - Published
- 2023
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33. Author Correction: Apoptotic stress causes mtDNA release during senescence and drives the SASP
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Victorelli, Stella, Salmonowicz, Hanna, Chapman, James, Martini, Helene, Vizioli, Maria Grazia, Riley, Joel S., Cloix, Catherine, Hall-Younger, Ella, Machado Espindola-Netto, Jair, Jurk, Diana, Lagnado, Anthony B., Sales Gomez, Lilian, Farr, Joshua N., Saul, Dominik, Reed, Rebecca, Kelly, George, Eppard, Madeline, Greaves, Laura C., Dou, Zhixun, Pirius, Nicholas, Szczepanowska, Karolina, Porritt, Rebecca A., Huang, Huijie, Huang, Timothy Y., Mann, Derek A., Masuda, Claudio Akio, Khosla, Sundeep, Dai, Haiming, Kaufmann, Scott H., Zacharioudakis, Emmanouil, Gavathiotis, Evripidis, LeBrasseur, Nathan K., Lei, Xue, Sainz, Alva G., Korolchuk, Viktor I., Adams, Peter D., Shadel, Gerald S., Tait, Stephen W. G., and Passos, João F.
- Published
- 2024
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34. Residue races of the number of prime divisors function
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Porritt, Sam
- Subjects
Mathematics - Number Theory - Abstract
We investigate the distribution of the function $\omega(n)$, the number of distinct prime divisors of $n$, in residue classes modulo $q$ for natural numbers $q$ greater than 2. In particular we ask `prime number races' style questions, as suggested by Coons and Dahmen in their paper `On the residue class distribution of the number of prime divisors of an integer'., Comment: 10 pages, 2 figures
- Published
- 2018
35. Collective, Anecdotal and Generative Refusal: A Queer-Feminist Pedagogy of the Unknown
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Wiffen, Declan, primary and Porritt, Betsy, additional
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- 2023
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36. IDOL regulates systemic energy balance through control of neuronal VLDLR expression
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Lee, Stephen D, Priest, Christina, Bjursell, Mikael, Gao, Jie, Arneson, Douglas V, Ahn, In Sook, Diamante, Graciel, van Veen, J Edward, Massa, Megan G, Calkin, Anna C, Kim, Jason, Andersén, Harriet, Rajbhandari, Prashant, Porritt, Michelle, Carreras, Alba, Ahnmark, Andrea, Seeliger, Frank, Maxvall, Ingela, Eliasson, Pernilla, Althage, Magnus, Åkerblad, Peter, Lindén, Daniel, Cole, Tracy A, Lee, Richard, Boyd, Helen, Bohlooly-Y, Mohammad, Correa, Stephanie M, Yang, Xia, Tontonoz, Peter, and Hong, Cynthia
- Subjects
Medical Biochemistry and Metabolomics ,Medical Physiology ,Biomedical and Clinical Sciences ,Nutrition and Dietetics ,Digestive Diseases ,Nutrition ,Obesity ,Genetics ,Liver Disease ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Metabolic and endocrine ,Stroke ,Oral and gastrointestinal ,Animals ,Blood Glucose ,Diet ,Energy Metabolism ,Hypothalamus ,Insulin Resistance ,Mice ,Mice ,Knockout ,Neurons ,Receptors ,LDL ,Ubiquitin-Protein Ligases ,Medical biochemistry and metabolomics ,Medical physiology ,Nutrition and dietetics - Abstract
Liver X receptors limit cellular lipid uptake by stimulating the transcription of Inducible Degrader of the LDL Receptor (IDOL), an E3 ubiquitin ligase that targets lipoprotein receptors for degradation. The function of IDOL in systemic metabolism is incompletely understood. Here we show that loss of IDOL in mice protects against the development of diet-induced obesity and metabolic dysfunction by altering food intake and thermogenesis. Unexpectedly, analysis of tissue-specific knockout mice revealed that IDOL affects energy balance, not through its actions in peripheral metabolic tissues (liver, adipose, endothelium, intestine, skeletal muscle), but by controlling lipoprotein receptor abundance in neurons. Single-cell RNA sequencing of the hypothalamus demonstrated that IDOL deletion altered gene expression linked to control of metabolism. Finally, we identify VLDLR rather than LDLR as the primary mediator of IDOL effects on energy balance. These studies identify a role for the neuronal IDOL-VLDLR pathway in metabolic homeostasis and diet-induced obesity.
- Published
- 2019
37. Unbiased detection of CRISPR off-targets in vivo using DISCOVER-Seq
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Wienert, Beeke, Wyman, Stacia K, Richardson, Christopher D, Yeh, Charles D, Akcakaya, Pinar, Porritt, Michelle J, Morlock, Michaela, Vu, Jonathan T, Kazane, Katelynn R, Watry, Hannah L, Judge, Luke M, Conklin, Bruce R, Maresca, Marcello, and Corn, Jacob E
- Subjects
Biochemistry and Cell Biology ,Biological Sciences ,Stem Cell Research - Induced Pluripotent Stem Cell ,Human Genome ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,Biotechnology ,Stem Cell Research ,Regenerative Medicine ,Genetics ,Aetiology ,2.2 Factors relating to the physical environment ,Adenoviridae ,Animals ,CRISPR-Associated Protein 9 ,CRISPR-Cas Systems ,Cell Line ,Chromatin Immunoprecipitation ,Clustered Regularly Interspaced Short Palindromic Repeats ,DNA ,DNA Breaks ,Double-Stranded ,DNA Repair ,DNA Repair Enzymes ,Gene Editing ,Humans ,Induced Pluripotent Stem Cells ,K562 Cells ,MRE11 Homologue Protein ,RNA ,Guide ,Kinetoplastida ,Sequence Analysis ,DNA ,General Science & Technology - Abstract
CRISPR-Cas genome editing induces targeted DNA damage but can also affect off-target sites. Current off-target discovery methods work using purified DNA or specific cellular models but are incapable of direct detection in vivo. We developed DISCOVER-Seq (discovery of in situ Cas off-targets and verification by sequencing), a universally applicable approach for unbiased off-target identification that leverages the recruitment of DNA repair factors in cells and organisms. Tracking the precise recruitment of MRE11 uncovers the molecular nature of Cas activity in cells with single-base resolution. DISCOVER-Seq works with multiple guide RNA formats and types of Cas enzymes, allowing characterization of new editing tools. Off-targets can be identified in cell lines and patient-derived induced pluripotent stem cells and during adenoviral editing of mice, paving the way for in situ off-target discovery within individual patient genotypes during therapeutic genome editing.
- Published
- 2019
38. The exposed Mule Creek vent deposits record the structure of a volcanic conduit during a hybrid explosive–effusive eruption
- Author
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Unwin, Holly E., Tuffen, Hugh, Wadsworth, Fabian B., Phillips, Emrys R., James, Mike R., Foster, Annabelle, Kolzenburg, Stephan, Castro, Jonathan M., and Porritt, Lucy A.
- Published
- 2023
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39. A note on exponential-M\'{o}bius sums over $\mathbb{F}_q[t]$
- Author
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Porritt, Sam
- Subjects
Mathematics - Number Theory - Abstract
In 1991, Baker and Harman proved, under the assumption of the generalized Riemann hypothesis, that $\max_{ \theta \in [0,1) }\left|\sum_{ n \leq x } \mu(n) e(n \theta) \right| \ll_\epsilon x^{3/4 + \epsilon}$. The purpose of this note is to deduce an analogous bound in the context of polynomials over a finite field using Weil's Riemann Hypothesis for curves over a finite field. Our approach is based on the work of Hayes who studied exponential sums over irreducible polynomials., Comment: 5 pages + references. Similar result appears in arXiv:1711.05358. Second version has stronger result due to more appropriate divisor sum bound
- Published
- 2017
40. Irreducible polynomials over a finite field with restricted coefficients
- Author
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Porritt, Sam
- Subjects
Mathematics - Number Theory - Abstract
We prove a function field analogue of Maynard's result about primes with restricted digits. That is, for certain ranges of parameters n and q, we prove an asymptotic formula for the number of irreducible polynomials of degree n over a finite field F_q whose coefficients are restriced to lie in a given subset of F_q., Comment: 10 pages
- Published
- 2017
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41. The function field Sath\'e-Selberg formula in arithmetic progressions and `short intervals'
- Author
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Afshar, Ardavan and Porritt, Sam
- Subjects
Mathematics - Number Theory ,Primary 11T55, Secondary 11M38 - Abstract
We use a function field analogue of a method of Selberg to derive an asymptotic formula for the number of (square-free) monic polynomials in $\mathbb{F}_q[X]$ of degree $n$ with precisely $k$ irreducible factors, in the limit as $n$ tends to infinity. We then adapt this method to count such polynomials in arithmetic progressions and short intervals, and by making use of Weil's `Riemann hypothesis' for curves over $\mathbb{F}_q$, obtain better ranges for these formulae than are currently known for their analogues in the number field setting. Finally, we briefly discuss the regime in which $q$ tends to infinity., Comment: 16 pages. Added contact details
- Published
- 2017
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42. Autophagy Limits Inflammasome During Chlamydia pneumoniae Infection
- Author
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Crother, Timothy R, Porritt, Rebecca A, Dagvadorj, Jargalsaikhan, Tumurkhuu, Gantsetseg, Slepenkin, Anatoly V, Peterson, Ellena M, Chen, Shuang, Shimada, Kenichi, and Arditi, Moshe
- Subjects
Medical Microbiology ,Biomedical and Clinical Sciences ,Biological Sciences ,Lung ,Infectious Diseases ,Pneumonia & Influenza ,Pneumonia ,Emerging Infectious Diseases ,Sexually Transmitted Infections ,2.1 Biological and endogenous factors ,Aetiology ,Infection ,Good Health and Well Being ,Animals ,Autophagy ,Biomarkers ,Chlamydophila Infections ,Chlamydophila pneumoniae ,Fibroblasts ,Flow Cytometry ,Gene Knockout Techniques ,Inflammasomes ,Macrophages ,Mice ,autophagy ,Chlamydia pneumoniae ,inflammasome ,macrophages ,IL-1 beta ,IL-1β ,Immunology ,Biochemistry and cell biology ,Genetics - Abstract
Autophagy can either antagonize or promote intracellular bacterial growth, depending on the pathogen. Here, we investigated the role of autophagy during a pulmonary infection with the obligate intracellular pathogen, Chlamydia pneumoniae (CP). In mouse embryonic fibroblasts (MEFs) or macrophages, deficiency of autophagy pathway components led to enhanced CP replication, suggesting that autophagy exerts a bactericidal role. However, in vivo, mice with myeloid-specific deletion of the autophagic protein ATG16L1 suffered increased mortality during CP infection, neutrophilia, and increased inflammasome activation despite no change in bacterial burden. Induction of autophagy led to reduced CP replication in vitro, but impaired survival in CP-infected mice, associated with an initial reduction in IL-1β production, followed by enhanced neutrophil recruitment, defective CP clearance, and later inflammasome activation and IL-1β production, which drove the resulting mortality. Taken together, our data suggest that a delicate interplay exists between autophagy and inflammasome activation in determining the outcome of CP infection, perturbation of which can result in inflammatory pathology or unrestricted bacterial growth.
- Published
- 2019
43. Osteopontin depletion in macrophages perturbs proteostasis via regulating UCHL1-UPS axis and mitochondria-mediated apoptosis
- Author
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Altan Rentsendorj, Koen Raedschelders, Dieu-Trang Fuchs, Julia Sheyn, Vineet Vaibhav, Rebecca A. Porritt, Haoshen Shi, Jargalsaikhan Dagvadorj, Juliana de Freitas Germano, Yosef Koronyo, Moshe Arditi, Keith L. Black, Bhakta Prasad Gaire, Jennifer E. Van Eyk, and Maya Koronyo-Hamaoui
- Subjects
secreted phosphoprotein 1 ,early T-lymphocyte activation (ETA-1) ,bone/sialoprotein I (BSP-1 or BNSP) ,monocytes ,innate immunity ,mitochondrial dysfunction ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionOsteopontin (OPN; also known as SPP1), an immunomodulatory cytokine highly expressed in bone marrow-derived macrophages (BMMΦ), is known to regulate diverse cellular and molecular immune responses. We previously revealed that glatiramer acetate (GA) stimulation of BMMΦ upregulates OPN expression, promoting an anti-inflammatory, pro-healing phenotype, whereas OPN inhibition triggers a pro-inflammatory phenotype. However, the precise role of OPN in macrophage activation state is unknown.MethodsHere, we applied global proteome profiling via mass spectrometry (MS) analysis to gain a mechanistic understanding of OPN suppression versus induction in primary macrophage cultures. We analyzed protein networks and immune-related functional pathways in BMMΦ either with OPN knockout (OPNKO) or GA-mediated OPN induction compared with wild type (WT) macrophages. The most significant differentially expressed proteins (DEPs) were validated using immunocytochemistry, western blot, and immunoprecipitation assays.Results and discussionWe identified 631 DEPs in OPNKO or GA-stimulated macrophages as compared to WT macrophages. The two topmost downregulated DEPs in OPNKO macrophages were ubiquitin C-terminal hydrolase L1 (UCHL1), a crucial component of the ubiquitin-proteasome system (UPS), and the anti-inflammatory Heme oxygenase 1 (HMOX-1), whereas GA stimulation upregulated their expression. We found that UCHL1, previously described as a neuron-specific protein, is expressed by BMMΦ and its regulation in macrophages was OPN-dependent. Moreover, UCHL1 interacted with OPN in a protein complex. The effects of GA activation on inducing UCHL1 and anti-inflammatory macrophage profiles were mediated by OPN. Functional pathway analyses revealed two inversely regulated pathways in OPN-deficient macrophages: activated oxidative stress and lysosome-mitochondria-mediated apoptosis (e.g., ROS, Lamp1-2, ATP-synthase subunits, cathepsins, and cytochrome C and B subunits) and inhibited translation and proteolytic pathways (e.g., 60S and 40S ribosomal subunits and UPS proteins). In agreement with the proteome-bioinformatics data, western blot and immunocytochemical analyses revealed that OPN deficiency perturbs protein homeostasis in macrophages—inhibiting translation and protein turnover and inducing apoptosis—whereas OPN induction by GA restores cellular proteostasis. Taken together, OPN is essential for macrophage homeostatic balance via the regulation of protein synthesis, UCHL1-UPS axis, and mitochondria-mediated apoptotic processes, indicating its potential application in immune-based therapies.
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- 2023
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44. T-Cell-Intrinsic Receptor Interacting Protein 2 Regulates Pathogenic T Helper 17 Cell Differentiation
- Author
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Shimada, Kenichi, Porritt, Rebecca A, Markman, Janet L, O’Rourke, Jacqueline Gire, Wakita, Daiko, Rivas, Magali Noval, Ogawa, Chihiro, Kozhaya, Lina, Martins, Gislâine A, Unutmaz, Derya, Baloh, Robert H, Crother, Timothy R, Chen, Shuang, and Arditi, Moshe
- Subjects
Autoimmune Disease ,Lung ,2.1 Biological and endogenous factors ,Aetiology ,Infection ,Animals ,Atherosclerosis ,Biomarkers ,Caspase Activation and Recruitment Domain ,Cell Differentiation ,Encephalomyelitis ,Autoimmune ,Experimental ,Gene Expression ,Immunophenotyping ,Inflammation ,Interleukin-17 ,Interleukin-1beta ,Mice ,Mice ,Knockout ,Nuclear Receptor Subfamily 1 ,Group F ,Member 1 ,Receptor-Interacting Protein Serine-Threonine Kinase 2 ,Receptor-Interacting Protein Serine-Threonine Kinases ,T-Lymphocyte Subsets ,Th17 Cells ,Chlamydia pneumoniae ,IL-17 ,RIP2 ,RORα ,Th17 ,atherosclerosis ,chronic inflammation ,Immunology - Abstract
Receptor interacting protein 2 (RIP2) plays a role in sensing intracellular pathogens, but its function in T cells is unclear. We show that RIP2 deficiency in CD4+ T cells resulted in chronic and severe interleukin-17A-mediated inflammation during Chlamydia pneumoniae lung infection, increased T helper 17 (Th17) cell formation in lungs of infected mice, accelerated atherosclerosis, and more severe experimental autoimmune encephalomyelitis. While RIP2 deficiency resulted in reduced conventional Th17 cell differentiation, it led to significantly enhanced differentiation of pathogenic (p)Th17 cells, which was dependent on RORα transcription factor and interleukin-1 but independent of nucleotide oligomerization domain (NOD) 1 and 2. Overexpression of RIP2 resulted in suppression of pTh17 cell differentiation, an effect mediated by its CARD domain, and phenocopied by a cell-permeable RIP2 CARD peptide. Our data suggest that RIP2 has a T cell-intrinsic role in determining the balance between homeostatic and pathogenic Th17 cell responses.
- Published
- 2018
45. Chlamydia pneumoniae Hijacks a Host Autoregulatory IL-1β Loop to Drive Foam Cell Formation and Accelerate Atherosclerosis
- Author
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Tumurkhuu, Gantsetseg, Dagvadorj, Jargalsaikhan, Porritt, Rebecca A, Crother, Timothy R, Shimada, Kenichi, Tarling, Elizabeth J, Erbay, Ebru, Arditi, Moshe, and Chen, Shuang
- Subjects
Medical Microbiology ,Biomedical and Clinical Sciences ,Cardiovascular ,Infectious Diseases ,Atherosclerosis ,Aetiology ,2.1 Biological and endogenous factors ,ATP Binding Cassette Transporter 1 ,Animals ,Biological Transport ,Caspase 1 ,Chlamydophila pneumoniae ,Cholesterol ,Female ,Foam Cells ,Host Microbial Interactions ,Inflammasomes ,Interleukin-1beta ,Male ,Mice ,Mice ,Inbred C57BL ,Mice ,Knockout ,NLR Family ,Pyrin Domain-Containing 3 Protein ,Plaque ,Atherosclerotic ,Receptors ,G-Protein-Coupled ,Signal Transduction ,ABCA1 ,C. pneumoniae ,Gpr109a ,Nlrp3 ,aspartate ,atherosclerosis ,cholesterol efflux ,foam cells ,interleukin-1 beta ,niacin ,Biochemistry and Cell Biology ,Medical Biochemistry and Metabolomics ,Endocrinology & Metabolism ,Biochemistry and cell biology ,Medical biochemistry and metabolomics - Abstract
Pathogen burden accelerates atherosclerosis, but the mechanisms remain unresolved. Activation of the NLRP3 inflammasome is linked to atherogenesis. Here we investigated whether Chlamydia pneumoniae (C.pn) infection engages NLRP3 in promoting atherosclerosis. C.pn potentiated hyperlipidemia-induced inflammasome activity in cultured macrophages and in foam cells in atherosclerotic lesions of Ldlr-/- mice. C.pn-induced acceleration of atherosclerosis was significantly dependent on NLRP3 and caspase-1. We discovered that C.pn-induced extracellular IL-1β triggers a negative feedback loop to inhibit GPR109a and ABCA1 expression and cholesterol efflux, leading to accumulation of intracellular cholesterol and foam cell formation. Gpr109a and Abca1 were both upregulated in plaque lesions in Nlrp3-/- mice in both hyperlipidemic and C.pn infection models. Mature IL-1β and cholesterol may compete for access to the ABCA1 transporter to be exported from macrophages. C.pn exploits this metabolic-immune crosstalk, which can be modulated by NLRP3 inhibitors to alleviate atherosclerosis.
- Published
- 2018
46. Midcrustal Deformation in the Central Andes Constrained by Radial Anisotropy
- Author
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Lynner, Colton, Beck, Susan L, Zandt, George, Porritt, Robert W, Lin, Fan‐Chi, and Eilon, Zachary C
- Subjects
radial anisotropy ,crustal flow ,Central Andes ,ambient noise tomography ,Geochemistry ,Geology ,Geophysics - Published
- 2018
47. Effects of learning an increasing number of odors on olfactory learning, memory and generalization in detection dogs
- Author
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Waggoner, Paul, Lazarowski, Lucia, Hutchings, Bethany, Angle, Craig, and Porritt, Fay
- Published
- 2022
- Full Text
- View/download PDF
48. WED-422 Screening for viral hepatitis in the emergency department-the methodology to automate a feasible, acceptable and effective solution
- Author
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Girolamo, Julia Di, primary, Prince, David, additional, Alshiwanna, Basheer, additional, Porritt, Robert, additional, Thomas, David, additional, Bakridi, Shahida, additional, Tran, Hung, additional, Gryllis, Sophie, additional, Tiglao, Maria, additional, Haack, Rebecca, additional, Peralta, Kristian, additional, Bagatella, Melissa, additional, Petrovski, Irena, additional, Doan, Julie, additional, Cracknell, Richard, additional, Lawrence, Jeremy, additional, Maley, Michael, additional, Foo, Hong, additional, Jones, Nathan, additional, Dore, Gregory, additional, and Levy, Miriam, additional
- Published
- 2024
- Full Text
- View/download PDF
49. WED-470 Screening emergency admissions at risk of chronic hepatitis 3 extension (SEARCH 3X)-universal is better than risk-based screening for viral hepatitis
- Author
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Alshiwanna, Basheer, primary, Levy, Miriam, additional, Girolamo, Julia Di, additional, Bagatella, Melissa, additional, Petrovski, Irena, additional, Porritt, Robert, additional, Thomas, David, additional, Bakridi, Shahida, additional, Tran, Hung, additional, Gryllis, Sophie, additional, Tiglao, Maria, additional, Haack, Rebecca, additional, Peralta, Kristian, additional, Doan, Julie, additional, Lawrence, Jeremy, additional, Cracknell, Richard, additional, Maley, Michael, additional, Foo, Hong, additional, Jones, Nathan, additional, Dore, Gregory, additional, and Prince, David, additional
- Published
- 2024
- Full Text
- View/download PDF
50. Turning the flywheel: mobilizing the JBI model of evidence-based healthcare
- Author
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Jordan, Zoe, Pilla, Bianca, Porritt, Kylie, Munn, Zachary, Aromataris, Edoardo, and Lockwood, Craig
- Published
- 2023
- Full Text
- View/download PDF
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