18 results on '"Porcelli, Damiano"'
Search Results
2. Chromatin accessibility plays a key role in selective targeting of Hox proteins
- Author
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Porcelli, Damiano, Fischer, Bettina, Russell, Steven, and White, Robert
- Published
- 2019
- Full Text
- View/download PDF
3. Experimental sexual selection reveals rapid evolutionary divergence in sex‐specific transcriptomes and their interactions following mating
- Author
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Veltsos, Paris, primary, Porcelli, Damiano, additional, Fang, Yongxiang, additional, Cossins, Andrew R., additional, Ritchie, Michael G., additional, and Snook, Rhonda R., additional
- Published
- 2022
- Full Text
- View/download PDF
4. Gene expression clines reveal local adaptation and associated trade-offs at a continental scale
- Author
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Porcelli, Damiano, Westram, Anja M., Pascual, Marta, Gaston, Kevin J., Butlin, Roger K., and Snook, Rhonda R.
- Published
- 2016
- Full Text
- View/download PDF
5. Genomic analysis of European Drosophila populations reveals longitudinal structure and continent-wide selection
- Author
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Kapun, Martin, Barrón, Maite G., Staubach, Fabian, Vieira, Jorge, Obbard, Darren, J., Rota-Stabelli, Omar, Kankare, Maaria, Haudry, Annabelle, Wiberg, R. Axel W., Waidele, Lena, Kozeretska, Iryna, Pasyukova, Elena G., Loeschcke, Volker, Pascual, Marta, Vieira, Cristina P., Serga, Svitlana, Montchamp-Moreau, Catherine, Abbott, Jessica, Gibert, Patricia, Porcelli, Damiano, Posnien, Nico, Grath, Sonja, Sucena, Élio, Bergland, Alan O., Garcia Guerreiro, Maria Pilar, Onder, Banu Sebnem, Argyridou, Eliza, Guio, Lain, Schou, Mads Fristrup, Deplancke, Bart, Vieira, Cristina, Ritchie, Michael G., Zwaan, Blas J., Tauber, Eran, Orengo, Dorcas J., Puerma, Eva, Aguadé i Porres, Montserrat, Schmidt, Paul S., Parsch, John, Betancourt, Andrea J., Flatt, Thomas, González Pérez, Josefa, Agencia Estatal de Investigación (España), University of Freiburg, Academy of Finland, Russian Foundation for Basic Research, Danish Natural Science Research Council, Ministerio de Economía y Competitividad (España), European Commission, Centre National de la Recherche Scientifique (France), Swedish Research Council, German Research Foundation, National Institutes of Health (US), Ministerio de Ciencia, Innovación y Universidades (España), Agence Nationale de la Recherche (France), Israel Science Foundation, Austrian Science Fund, Biotechnology and Biological Sciences Research Council (UK), Swiss National Science Foundation, Kapun, Martin [0000-0002-3810-0504], Barrón, Maite G. [0000-0001-6146-6259], Staubach, Fabian [0000-0002-8097-2349], Vieira, Jorge [0000-0001-7032-5220], Obbard, Darren, J. [0000-0001-5392-8142], Rota-Stabelli, Omar [0000-0002-0030-7788], Kankare, Maaria [0000-0003-1541-9050], Haudry, Annabelle [0000-0001-6088-0909], Wiberg, R. Axel W. [0000-0002-8074-8670], Waidele, Lena [0000-0002-6323-6438], Kozeretska, Iryna [0000-0002-6485-1408], Pasyukova, Elena G. [0000-0002-6491-8561], Loeschcke, Volker [0000-0003-1450-0754], Pascual, Marta [0000-0002-6189-0612], Vieira, Cristina P. [0000-0002-7139-2107], Serga, Svitlana [0000-0003-1875-3185], Montchamp-Moreau, Catherine [0000-0002-5044-9709], Abbott, Jessica [0000-0002-8743-2089], Gibert, Patricia [0000-0002-9461-6820], Porcelli, Damiano [0000-0002-9019-5758], Posnien, Nico [0000-0003-0700-5595], Grath, Sonja [0000-0003-3621-736X], Sucena, Élio [0000-0001-8810-870X], Bergland, Alan O. [0000-0001-7145-7575], Onder, Banu Sebnem [0000-0002-3003-248X], Argyridou, Eliza [0000-0002-6890-4642], Guio, Lain [0000-0002-5481-5200], Schou, Mads Fristrup [0000-0001-5521-5269], Deplancke, Bart [0000-0001-9935-843X], Vieira, Cristina [0000-0003-3414-3993], Ritchie, Michael G. [0000-0001-7913-8675], Zwaan, Blas J. [0000-0002-8221-4998], Tauber, Eran [0000-0003-4018-6535], Orengo, Dorcas J. [0000-0001-7911-3224], Puerma, Eva [0000-0001-7261-187X], Aguadé i Porres, Montserrat [0000-0002-3884-7800], Schmidt, Paul S. [0000-0002-8076-6705], Parsch, John [0000-0001-9068-5549], Betancourt, Andrea J. [0000-0001-9351-1413], Flatt, Thomas [0000-0002-5990-1503], González Pérez, Josefa [0000-0001-9824-027X], Kapun, Martin, Barrón, Maite G., Staubach, Fabian, Vieira, Jorge, Obbard, Darren, J., Rota-Stabelli, Omar, Kankare, Maaria, Haudry, Annabelle, Wiberg, R. Axel W., Waidele, Lena, Kozeretska, Iryna, Pasyukova, Elena G., Loeschcke, Volker, Pascual, Marta, Vieira, Cristina P., Serga, Svitlana, Montchamp-Moreau, Catherine, Abbott, Jessica, Gibert, Patricia, Porcelli, Damiano, Posnien, Nico, Grath, Sonja, Sucena, Élio, Bergland, Alan O., Onder, Banu Sebnem, Argyridou, Eliza, Guio, Lain, Schou, Mads Fristrup, Deplancke, Bart, Vieira, Cristina, Ritchie, Michael G., Zwaan, Blas J., Tauber, Eran, Orengo, Dorcas J., Puerma, Eva, Aguadé i Porres, Montserrat, Schmidt, Paul S., Parsch, John, Betancourt, Andrea J., Flatt, Thomas, and González Pérez, Josefa
- Abstract
Genetic variation is the fuel of evolution. However, analyzing evolutionary dynamics in natural populations is challenging, sequencing of entire populations remains costly and comprehensive sampling logistically difficult. To tackle this issue and to define relevant spatial and temporal scales of variation, we have founded the European Drosophila Population Genomics Consortium (DrosEU). Here we present the first analysis of 48 D. melanogaster population samples collected across Europe in 2014. Our analysis uncovers novel patterns of variation at multiple levels: genome-wide neutral SNPs, mtDNA haplotypes, inversions, and TEs showing previously cryptic longitudinal population structure; signatures of selective sweeps shared among populations; presumably adaptive clines in inversions; and geographic variation in TEs. Additionally, we document highly variable microbiota and identify several new Drosophila viruses. Our study reveals novel aspects of the population biology of D. melanogaster and illustrates the power of extensive sampling and pooled sequencing of populations on a continent-wide scale.
- Published
- 2018
6. Experimental sexual selection reveals rapid evolutionary divergence in sex-specific transcriptomes and their interactions following mating
- Author
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Veltsos, Paris, primary, Porcelli, Damiano, additional, Fang, Yongxiang, additional, Cossins, Andrew R., additional, Ritchie, Michael G., additional, and Snook, Rhonda R., additional
- Published
- 2021
- Full Text
- View/download PDF
7. Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses
- Author
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Kapun, Martin, Barrón, Maite G, Staubach, Fabian, Obbard, Darren J, Wiberg, R Axel W, Vieira, Jorge, Goubert, Clément, Rota-Stabelli, Omar, Kankare, Maaria, Bogaerts-Márquez, María, Haudry, Annabelle, Waidele, Lena, Kozeretska, Iryna, Pasyukova, Elena G, Loeschcke, Volker, Pascual, Marta, Vieira, Cristina P, Serga, Svitlana, Montchamp-Moreau, Catherine, Abbott, Jessica, Gibert, Patricia, Porcelli, Damiano, Posnien, Nico, Sánchez-Gracia, Alejandro, Grath, Sonja, Sucena, Élio, Bergland, Alan O, Guerreiro, Maria Pilar Garcia, Onder, Banu Sebnem, Argyridou, Eliza, University of Zurich, Falush, Daniel, and Kapun, Martin
- Subjects
10127 Institute of Evolutionary Biology and Environmental Studies ,1105 Ecology, Evolution, Behavior and Systematics ,1311 Genetics ,Ecology ,Behavior and Systematics ,Evolution ,1312 Molecular Biology ,Genetics ,570 Life sciences ,biology ,590 Animals (Zoology) ,Molecular Biology - Published
- 2020
8. Evolution of genes and genomes on the Drosophila phylogeny
- Author
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Clark, Andrew G., Eisen, Michael B., Smith, Douglas R., Bergman, Casey M., Oliver, Brian, Markow, Therese A., Kaufman, Thomas C., Kellis, Manolis, Gelbart, William, Iyer, Venky N., Pollard, Daniel A., Sackton, Timothy B., Larracuente, Amanda M., Singh, Nadia D., Abad, Jose P., Abt, Dawn N., Adryan, Boris, Aguade, Montserrat, Akashi, Hiroshi, Anderson, Wyatt W., Aquadro, Charles F., Ardell, David H., Arguello, Roman, Artieri, Carlo G., Barbash, Daniel A., Barker, Daniel, Barsanti, Paolo, Batterham, Phil, Batzoglou, Serafim, Begun, Dave, Bhutkar, Arjun, Blanco, Enrico, Bosak, Stephanie A., Bradley, Robert K., Brand, Adrianne D., Brent, Michael R., Brooks, Angela N., Brown, Randall H., Butlin, Roger K., Caggese, Corrado, Calvi, Brian R., Bernardo de Carvalho, A., Caspi, Anat, Castrezana, Sergio, Celniker, Susan E., Chang, Jean L., Chapple, Charles, Chatterji, Sourav, Chinwalla, Asif, Civetta, Alberto, Clifton, Sandra W., Comeron, Josep M., Costello, James C., Coyne, Jerry A., Daub, Jennifer, David, Robert G., Delcher, Arthur L., Delehaunty, Kim, Do, Chuong B., Ebling, Heather, Edwards, Kevin, Eickbush, Thomas, Evans, Jay D., Filipski, Alan, Findeiß, Sven, Freyhult, Eva, Fulton, Lucinda, Fulton, Robert, Garcia, Ana C. L., Gardiner, Anastasia, Garfield, David A., Garvin, Barry E., Gibson, Greg, Gilbert, Don, Gnerre, Sante, Godfrey, Jennifer, Good, Robert, Gotea, Valer, Gravely, Brenton, Greenberg, Anthony J., Griffiths-Jones, Sam, Gross, Samuel, Guigo, Roderic, Gustafson, Erik A., Haerty, Wilfried, Hahn, Matthew W., Halligan, Daniel L., Halpern, Aaron L., Halter, Gillian M., Han, Mira V., Heger, Andreas, Hillier, LaDeana, Hinrichs, Angie S., Holmes, Ian, Hoskins, Roger A., Hubisz, Melissa J., Hultmark, Dan, Huntley, Melanie A., Jaffe, David B., Jagadeeshan, Santosh, Jeck, William R., Johnson, Justin, Jones, Corbin D., Jordan, William C., Karpen, Gary H., Kataoka, Eiko, Keightley, Peter D., Kheradpour, Pouya, Kirkness, Ewen F., Koerich, Leonardo B., Kristiansen, Karsten, Kudrna, Dave, Kulathinal, Rob J., Kumar, Sudhir, Kwok, Roberta, Lander, Eric, Langley, Charles H., Lapoint, Richard, Lazzaro, Brian P., Lee, So-Jeong, Levesque, Lisa, Li, Ruiqiang, Lin, Chiao-Feng, Lin, Michael F., Lindblad-Toh, Kerstin, Llopart, Ana, Long, Manyuan, Low, Lloyd, Lozovsky, Elena, Lu, Jian, Luo, Meizhong, Machado, Carlos A., Makalowski, Wojciech, Marzo, Mar, Matsuda, Muneo, Matzkin, Luciano, McAllister, Bryant, McBride, Carolyn S., McKernan, Brendan, McKernan, Kevin, Mendez-Lago, Maria, Minx, Patrick, Mollenhauer, Michael U., Montooth, Kristi, Mount, Stephen M., Mu, Xu, Myers, Eugene, Negre, Barbara, Newfeld, Stuart, Nielsen, Rasmus, Noor, Mohamed A. F., O'Grady, Patrick, Pachter, Lior, Papaceit, Montserrat, Parisi, Matthew J., Parisi, Michael, Parts, Leopold, Pedersen, Jakob S., Pesole, Graziano, Phillippy, Adam M., Ponting, Chris P., Pop, Mihai, Porcelli, Damiano, Powell, Jeffrey R., Prohaska, Sonja, Pruitt, Kim, Puig, Marta, Quesneville, Hadi, Ravi Ram, Kristipati, Rand, David, Rasmussen, Matthew D., Reed, Laura K., Reenan, Robert, Reily, Amy, Remington, Karin A., Rieger, Tania T., Ritchie, Michael G., Robin, Charles, Rogers, Yu-Hui, Rohde, Claudia, Rozas, Julio, Rubenfield, Marc J., Ruiz, Alfredo, Russo, Susan, Salzberg, Steven L., Sanchez-Gracia, Alejandro, Saranga, David J., Sato, Hajime, Schaeffer, Stephen W., Schatz, Michael C., Schlenke, Todd, Schwartz, Russell, Segarra, Carmen, Singh, Rama S., Sirot, Laura, Sirota, Marina, Sisneros, Nicholas B., Smith, Chris D., Smith, Temple F., Spieth, John, Stage, Deborah E., Stark, Alexander, Stephan, Wolfgang, Strausberg, Robert L., Strempel, Sebastian, Sturgill, David, Sutton, Granger, Sutton, Granger G., Tao, Wei, Teichmann, Sarah, Tobari, Yoshiko N., Tomimura, Yoshihiko, Tsolas, Jason M., Valente, Vera L. S., Venter, Eli, Craig Venter, J., Vicario, Saverio, Vieira, Filipe G., Vilella, Albert J., Villasante, Alfredo, Walenz, Brian, Wang, Jun, Wasserman, Marvin, Watts, Thomas, Wilson, Derek, Wilson, Richard K., Wing, Rod A., Wolfner, Mariana F., Wong, Alex, Ka-Shu Wong, Gane, Wu, Chung-I, Wu, Gabriel, Yamamoto, Daisuke, Yang, Hsiao-Pei, Yang, Shiaw-Pyng, Yorke, James A., Yoshida, Kiyohito, Zdobnov, Evgeny, Zhang, Peili, Zhang, Yu, Zimin, Aleksey V., Baldwin, Jennifer, Abdouelleil, Amr, Abdulkadir, Jamal, Abebe, Adal, Abera, Brikti, Abreu, Justin, Christophe Acer, St, Aftuck, Lynne, Alexander, Allen, An, Peter, Anderson, Erica, Anderson, Scott, Arachi, Harindra, Azer, Marc, Bachantsang, Pasang, Barry, Andrew, Bayul, Tashi, Berlin, Aaron, Bessette, Daniel, Bloom, Toby, Blye, Jason, Boguslavskiy, Leonid, Bonnet, Claude, Boukhgalter, Boris, Bourzgui, Imane, Brown, Adam, Cahill, Patrick, Channer, Sheridon, Cheshatsang, Yama, Chuda, Lisa, Citroen, Mieke, Collymore, Alville, Cooke, Patrick, Costello, Maura, D'Aco, Katie, Daza, Riza, De Haan, Georgius, DeGray, Stuart, DeMaso, Christina, Dhargay, Norbu, Dooley, Kimberly, Dooley, Erin, Doricent, Missole, Dorje, Passang, Dorjee, Kunsang, Dupes, Alan, Elong, Richard, Falk, Jill, Farina, Abderrahim, Faro, Susan, Ferguson, Diallo, Fisher, Sheila, Foley, Chelsea D., Franke, Alicia, Friedrich, Dennis, Gadbois, Loryn, Gearin, Gary, Gearin, Christina R., Giannoukos, Georgia, Goode, Tina, Graham, Joseph, Grandbois, Edward, Grewal, Sharleen, Gyaltsen, Kunsang, Hafez, Nabil, Hagos, Birhane, Hall, Jennifer, Henson, Charlotte, Hollinger, Andrew, Honan, Tracey, Huard, Monika D., Hughes, Leanne, Hurhula, Brian, Erii Husby, M, Kamat, Asha, Kanga, Ben, Kashin, Seva, Khazanovich, Dmitry, Kisner, Peter, Lance, Krista, Lara, Marcia, Lee, William, Lennon, Niall, Letendre, Frances, LeVine, Rosie, Lipovsky, Alex, Liu, Xiaohong, Liu, Jinlei, Liu, Shangtao, Lokyitsang, Tashi, Lokyitsang, Yeshi, Lubonja, Rakela, Lui, Annie, MacDonald, Pen, Magnisalis, Vasilia, Maru, Kebede, Matthews, Charles, McCusker, William, McDonough, Susan, Mehta, Teena, Meldrim, James, Meneus, Louis, Mihai, Oana, Mihalev, Atanas, Mihova, Tanya, Mittelman, Rachel, Mlenga, Valentine, Montmayeur, Anna, Mulrain, Leonidas, Navidi, Adam, Naylor, Jerome, Negash, Tamrat, Nguyen, Thu, Nguyen, Nga, Nicol, Robert, Norbu, Choe, Norbu, Nyima, Novod, Nathaniel, O'Neill, Barry, Osman, Sahal, Markiewicz, Eva, Oyono, Otero L., Patti, Christopher, Phunkhang, Pema, Pierre, Fritz, Priest, Margaret, Raghuraman, Sujaa, Rege, Filip, Reyes, Rebecca, Rise, Cecil, Rogov, Peter, Ross, Keenan, Ryan, Elizabeth, Settipalli, Sampath, Shea, Terry, Sherpa, Ngawang, Shi, Lu, Shih, Diana, Sparrow, Todd, Spaulding, Jessica, Stalker, John, Stange-Thomann, Nicole, Stavropoulos, Sharon, Stone, Catherine, Strader, Christopher, Tesfaye, Senait, Thomson, Talene, Thoulutsang, Yama, Thoulutsang, Dawa, Topham, Kerri, Topping, Ira, Tsamla, Tsamla, Vassiliev, Helen, Vo, Andy, Wangchuk, Tsering, Wangdi, Tsering, Weiand, Michael, Wilkinson, Jane, Wilson, Adam, Yadav, Shailendra, Young, Geneva, Yu, Qing, Zembek, Lisa, Zhong, Danni, Zimmer, Andrew, Zwirko, Zac, Alvarez, Pablo, Brockman, Will, Butler, Jonathan, Chin, CheeWhye, Grabherr, Manfred, Kleber, Michael, Mauceli, Evan, and MacCallum, Iain
- Subjects
Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Author(s): Drosophila 12 Genomes Consortium; Project Leaders; Andrew G. Clark (corresponding author) [1]; Michael B. Eisen (corresponding author) [2, 3]; Douglas R. Smith (corresponding author) [4]; Casey M. Bergman (corresponding [...]
- Published
- 2007
- Full Text
- View/download PDF
9. Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses
- Author
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Kapun, Martin, primary, Barrón, Maite G, additional, Staubach, Fabian, additional, Obbard, Darren J, additional, Wiberg, R Axel W, additional, Vieira, Jorge, additional, Goubert, Clément, additional, Rota-Stabelli, Omar, additional, Kankare, Maaria, additional, Bogaerts-Márquez, María, additional, Haudry, Annabelle, additional, Waidele, Lena, additional, Kozeretska, Iryna, additional, Pasyukova, Elena G, additional, Loeschcke, Volker, additional, Pascual, Marta, additional, Vieira, Cristina P, additional, Serga, Svitlana, additional, Montchamp-Moreau, Catherine, additional, Abbott, Jessica, additional, Gibert, Patricia, additional, Porcelli, Damiano, additional, Posnien, Nico, additional, Sánchez-Gracia, Alejandro, additional, Grath, Sonja, additional, Sucena, Élio, additional, Bergland, Alan O, additional, Guerreiro, Maria Pilar Garcia, additional, Onder, Banu Sebnem, additional, Argyridou, Eliza, additional, Guio, Lain, additional, Schou, Mads Fristrup, additional, Deplancke, Bart, additional, Vieira, Cristina, additional, Ritchie, Michael G, additional, Zwaan, Bas J, additional, Tauber, Eran, additional, Orengo, Dorcas J, additional, Puerma, Eva, additional, Aguadé, Montserrat, additional, Schmidt, Paul, additional, Parsch, John, additional, Betancourt, Andrea J, additional, Flatt, Thomas, additional, and González, Josefa, additional
- Published
- 2020
- Full Text
- View/download PDF
10. Additional file 1: of Chromatin accessibility plays a key role in selective targeting of Hox proteins
- Author
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Porcelli, Damiano, Fischer, Bettina, Russell, Steven, and White, Robert
- Subjects
animal structures - Abstract
Figure S1. The association between Hox specificity and binding site affinity, binding region numbers and chromatin accessibility profiles; Figure S2. Hox, Hox+Hth, Hth and Exd binding in open and closed chromatin; Figure S3. Motif analysis showing individual motifs; Figure S4. De-novo motif analysis of Exd/Hth cofactor enhanced binding regions; Figure S5. Comparing the effects of Exd/Hth and Gcm: Chromatin accessibility in Hox + Exd/Hth compared to Hox + Gcm; Figure S6. Hox occupancy is more strongly associated with binding region chromatin accessibility than with binding affinity; Figure S7. The presence of Exd/Hth leads to both enhanced and reduced Abd-B binding; Figure S8. Comparison of Ubx and Dfd binding in presence of Gcm for regions in basal Kc167 closed chromatin; Table S1. ChIP-seq read overview; Table S2. ChIP-Seq binding region numbers; Table S3. Stable cell lines ATAC-seq read overview; Table S4. Cofactor-enhanced binding analysis of transient data in Hox group peak regions; Table S5. Increased chromatin accessibility analysis. (PDF 5942 kb)
- Published
- 2019
- Full Text
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11. Chromatin Accessibility Plays a Key Role in Selective Targeting of Hox Proteins
- Author
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Porcelli, Damiano, primary, Fischer, Bettina, additional, Russell, Steven, additional, and White, Robert, additional
- Published
- 2018
- Full Text
- View/download PDF
12. The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates
- Author
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Pesole Graziano, Barsanti Paolo, Porcelli Damiano, and Caggese Corrado
- Subjects
Evolution ,QH359-425 - Abstract
Abstract Background When orthologous sequences from species distributed throughout an optimal range of divergence times are available, comparative genomics is a powerful tool to address problems such as the identification of the forces that shape gene structure during evolution, although the functional constraints involved may vary in different genes and lineages. Results We identified and annotated in the MitoComp2 dataset the orthologs of 68 nuclear genes controlling oxidative phosphorylation in 11 Drosophilidae species and in five non-Drosophilidae insects, and compared them with each other and with their counterparts in three vertebrates (Fugu rubripes, Danio rerio and Homo sapiens) and in the cnidarian Nematostella vectensis, taking into account conservation of gene structure and regulatory motifs, and preservation of gene paralogs in the genome. Comparative analysis indicates that the ancestral insect OXPHOS genes were intron rich and that extensive intron loss and lineage-specific intron gain occurred during evolution. Comparison with vertebrates and cnidarians also shows that many OXPHOS gene introns predate the cnidarian/Bilateria evolutionary split. The nuclear respiratory gene element (NRG) has played a key role in the evolution of the insect OXPHOS genes; it is constantly conserved in the OXPHOS orthologs of all the insect species examined, while their duplicates either completely lack the element or possess only relics of the motif. Conclusion Our observations reinforce the notion that the common ancestor of most animal phyla had intron-rich gene, and suggest that changes in the pattern of expression of the gene facilitate the fixation of duplications in the genome and the development of novel genetic functions.
- Published
- 2007
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13. Characterization of Drosophila ATPsynC mutants as a new model of mitochondrial ATP synthase disorders
- Author
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Lovero, Domenica, primary, Giordano, Luca, additional, Marsano, René Massimiliano, additional, Sanchez-Martinez, Alvaro, additional, Boukhatmi, Hadi, additional, Drechsler, Maik, additional, Oliva, Marta, additional, Whitworth, Alexander J., additional, Porcelli, Damiano, additional, and Caggese, Corrado, additional
- Published
- 2018
- Full Text
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14. Genomic analysis of EuropeanDrosophila melanogasterpopulations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses
- Author
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Kapun, Martin, primary, Barrón, Maite G., additional, Staubach, Fabian, additional, Obbard, Darren J., additional, Wiberg, R. Axel W., additional, Vieira, Jorge, additional, Goubert, Clément, additional, Rota-Stabelli, Omar, additional, Kankare, Maaria, additional, Bogaerts-Márquez, María, additional, Haudry, Annabelle, additional, Waidele, Lena, additional, Kozeretska, Iryna, additional, Pasyukova, Elena G., additional, Loeschcke, Volker, additional, Pascual, Marta, additional, Vieira, Cristina P., additional, Serga, Svitlana, additional, Montchamp-Moreau, Catherine, additional, Abbott, Jessica, additional, Gibert, Patricia, additional, Porcelli, Damiano, additional, Posnien, Nico, additional, Sánchez-Gracia, Alejandro, additional, Grath, Sonja, additional, Sucena, Élio, additional, Bergland, Alan O., additional, Guerreiro, Maria Pilar Garcia, additional, Onder, Banu Sebnem, additional, Argyridou, Eliza, additional, Guio, Lain, additional, Schou, Mads Fristrup, additional, Deplancke, Bart, additional, Vieira, Cristina, additional, Ritchie, Michael G., additional, Zwaan, Bas J., additional, Tauber, Eran, additional, Orengo, Dorcas J., additional, Puerma, Eva, additional, Aguadé, Montserrat, additional, Schmidt, Paul S., additional, Parsch, John, additional, Betancourt, Andrea J., additional, Flatt, Thomas, additional, and González, Josefa, additional
- Published
- 2018
- Full Text
- View/download PDF
15. Genetic, functional and evolutionary characterization of scox, the Drosophila melanogaster ortholog of the human SCO1 gene
- Author
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Porcelli, Damiano, primary, Oliva, Marta, additional, Duchi, Serena, additional, Latorre, Dominga, additional, Cavaliere, Valeria, additional, Barsanti, Paolo, additional, Villani, Gaetano, additional, Gargiulo, Giuseppe, additional, and Caggese, Corrado, additional
- Published
- 2010
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16. The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates
- Author
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Porcelli, Damiano, primary, Barsanti, Paolo, additional, Pesole, Graziano, additional, and Caggese, Corrado, additional
- Published
- 2007
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- View/download PDF
17. The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
- Author
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D’Elia, Domenica, primary, Catalano, Domenico, additional, Licciulli, Flavio, additional, Turi, Antonio, additional, Tripoli, Gaetano, additional, Porcelli, Damiano, additional, Saccone, Cecilia, additional, and Caggese, Corrado, additional
- Published
- 2006
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- View/download PDF
18. The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae.
- Author
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D'Elia D, Catalano D, Licciulli F, Turi A, Tripoli G, Porcelli D, Saccone C, and Caggese C
- Subjects
- Animals, Biological Evolution, Drosophila melanogaster genetics, Humans, Mitochondria genetics, User-Computer Interface, Anopheles genetics, Databases, Nucleic Acid, Drosophila genetics, Genes, Insect, Oxidative Phosphorylation
- Abstract
The oxidative phosphorylation (OXPHOS) is the primary energy-producing process of all aerobic organisms and the only cellular function under the dual control of both the mitochondrial and the nuclear genomes. Functional characterization and evolutionary study of the OXPHOS system is of great importance for the understanding of many as yet unclear aspects of nucleus-mitochondrion genomic co-evolution and co-regulation gene networks. The MitoDrome database is a web-based database which provides genomic annotations about nuclear genes of Drosophila melanogaster encoding for mitochondrial proteins. Recently, MitoDrome has included a new section annotating genomic information about OXPHOS genes in Drosophila pseudoobscura and Anopheles gambiae and their comparative analysis with their Drosophila melanogaster and human counterparts. The introduction of this new comparative annotation section into MitoDrome is expected to be a useful resource for both functional and structural genomics related to the OXPHOS system.
- Published
- 2006
- Full Text
- View/download PDF
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