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Despite the evidence that supermassive black holes (SMBHs) co-evolve with their host galaxy, and that most of the growth of these SMBHs occurs via merger-free processes, the underlying mechanisms which drive this secular co-evolution are poorly understood. We investigate the role that both strong and weak large-scale galactic bars play in mediating this relationship. Using 72,940 disc galaxies in a volume-limited sample from Galaxy Zoo DESI, we analyse the active galactic nucleus (AGN) fraction in strongly barred, weakly barred, and unbarred galaxies up to z = 0.1 over a range of stellar masses and colours. After controlling for stellar mass and colour, we find that the optically selected AGN fraction is 31.6 +/- 0.9 per cent in strongly barred galaxies, 23.3 +/- 0.8 per cent in weakly barred galaxies, and 14.2 +/- 0.6 per cent in unbarred disc galaxies. These are highly statistically robust results, strengthening the tantalising results in earlier works. Strongly barred galaxies have a higher fraction of AGNs than weakly barred galaxies, which in turn have a higher fraction than unbarred galaxies. Thus, while bars are not required in order to grow a SMBH in a disc galaxy, large-scale galactic bars appear to facilitate AGN fuelling, and the presence of a strong bar makes a disc galaxy more than twice as likely to host an AGN than an unbarred galaxy at all galaxy stellar masses and colours., Comment: 11 pages, 8 figures, accepted for publication in MNRAS

: Non-resonant background (NRB) plays a significant role in coherent anti-Stokes Raman scattering (CARS) spectroscopic applications. All the recent works primarily focused on removing the NRB using different deep learning methods, and only one study explored the effect of NRB. Hence, in this work, we systematically investigated the impact of NRB variation on Raman signal retrieval. The NRB is simulated as a linear function with different strengths relative to the resonant Raman signal, and the variance also changed for each NRB strength. The resonant part of nonlinear susceptibility is extracted from real experimental Raman data; hence, the simulated CARS data better approximate the experimental CARS spectra. Then, the corresponding Raman signal is retrieved by four different methods: maximum entropy method (MEM), Kramers-Kronig (KK), convolutional neural network (CNN), and long short-term memory (LSTM) network. Pearson correlation measurements and principal component analysis combined with linear discriminant analysis (PCA-LDA) modelling revealed that MEM and KK methods have an edge over LSTM and CNN for higher NRB strengths. It is also demonstrated that normalizing the input data favors LSTM and CNN predictions. In contrast, background removal from the predictions significantly influenced Pearson correlation but not the classification accuracies for MEM and KK. This comprehensive study is done for the first time to the best of our knowledge and has the potential to impact the CARS spectroscopy and microscopy applications in different areas., Comment: 15 pages, 7 figures

We present the first systematic investigation of supervised scaling laws outside of an ImageNet-like context - on images of galaxies. We use 840k galaxy images and over 100M annotations by Galaxy Zoo volunteers, comparable in scale to Imagenet-1K. We find that adding annotated galaxy images provides a power law improvement in performance across all architectures and all tasks, while adding trainable parameters is effective only for some (typically more subjectively challenging) tasks. We then compare the downstream performance of finetuned models pretrained on either ImageNet-12k alone vs. additionally pretrained on our galaxy images. We achieve an average relative error rate reduction of 31% across 5 downstream tasks of scientific interest. Our finetuned models are more label-efficient and, unlike their ImageNet-12k-pretrained equivalents, often achieve linear transfer performance equal to that of end-to-end finetuning. We find relatively modest additional downstream benefits from scaling model size, implying that scaling alone is not sufficient to address our domain gap, and suggest that practitioners with qualitatively different images might benefit more from in-domain adaption followed by targeted downstream labelling., Comment: 10+6 pages, 12 figures. Appendix C2 based on arxiv:2206.11927. Code, demos, documentation at https://github.com/mwalmsley/zoobot

Giant Star-forming Clumps (GSFCs) are areas of intensive star-formation that are commonly observed in high-redshift (z>1) galaxies but their formation and role in galaxy evolution remain unclear. High-resolution observations of low-redshift clumpy galaxy analogues are rare and restricted to a limited set of galaxies but the increasing availability of wide-field galaxy survey data makes the detection of large clumpy galaxy samples increasingly feasible. Deep Learning, and in particular CNNs, have been successfully applied to image classification tasks in astrophysical data analysis. However, one application of DL that remains relatively unexplored is that of automatically identifying and localising specific objects or features in astrophysical imaging data. In this paper we demonstrate the feasibility of using Deep learning-based object detection models to localise GSFCs in astrophysical imaging data. We apply the Faster R-CNN object detection framework (FRCNN) to identify GSFCs in low redshift (z<0.3) galaxies. Unlike other studies, we train different FRCNN models not on simulated images with known labels but on real observational data that was collected by the Sloan Digital Sky Survey Legacy Survey and labelled by volunteers from the citizen science project `Galaxy Zoo: Clump Scout'. The FRCNN model relies on a CNN component as a `backbone' feature extractor. We show that CNNs, that have been pre-trained for image classification using astrophysical images, outperform those that have been pre-trained on terrestrial images. In particular, we compare a domain-specific CNN -`Zoobot' - with a generic classification backbone and find that Zoobot achieves higher detection performance and also requires smaller training data sets to do so. Our final model is capable of producing GSFC detections with a completeness and purity of >=0.8 while only being trained on ~5,000 galaxy images., Comment: Accepted for publication in RASTI, 22 pages

We present detailed morphology measurements for 8.67 million galaxies in the DESI Legacy Imaging Surveys (DECaLS, MzLS, and BASS, plus DES). These are automated measurements made by deep learning models trained on Galaxy Zoo volunteer votes. Our models typically predict the fraction of volunteers selecting each answer to within 5-10\% for every answer to every GZ question. The models are trained on newly-collected votes for DESI-LS DR8 images as well as historical votes from GZ DECaLS. We also release the newly-collected votes. Extending our morphology measurements outside of the previously-released DECaLS/SDSS intersection increases our sky coverage by a factor of 4 (5,000 to 19,000 deg$^2$) and allows for full overlap with complementary surveys including ALFALFA and MaNGA., Comment: 20 pages. Accepted at MNRAS. Catalog available via https://zenodo.org/record/7786416. Pretrained models available via https://github.com/mwalmsley/zoobot. Vizier and Astro Data Lab access not yet available. With thanks to the Galaxy Zoo volunteers

Plasmonic enhancement of nonlinear light-matter interaction can be achieved via dedicated optimization of resonant plasmonic modes that are spectrally matched to the different wavelengths involved in the particular nonlinear optical process. In this work, we investigate the generation and enhancement of broadband four-wave mixing (FWM) in a plasmonic azimuthally chirped grating (ACG). The azimuthally varying grating periodicity in an ACG offers a well-defined channel to mediate the near field and the far field over a broad range of wavelengths. However, the particular mechanism responsible for field enhancement in such a platform depends on the interplay between the effects manifested by both the groove geometry and the grating's periodicity. This work delineates the collective contribution of groove geometry-dependent localized surface plasmon resonance (LSPR) and periodicity-dependent plasmonic surface lattice resonance (PSLR) over a broad range of wavelengths to bring into effect the enhancement of broadband FWM in an ACG.

The deployment of plasmonic nanostructures to enhance nonlinear signal generation requires effective far-to-near field coupling and phase matching for frequency conversion. While the latter can be easily achieved at plasmonic hotspots, the former is an antenna problem that requires dedicated structural design and optimization. Plasmonic gratings are a simple but effective platform for nonlinear signal generation since they provide a well-defined momentum for photon-plasmon coupling and local hotspots for frequency conversion. In this work, a plasmonic azimuthally chirped grating (ACG), which provides spatially resolved broadband momentum for photon-plasmon coupling, was exploited to investigate the plasmonic enhancement effect in two nonlinear optical processes, namely two-photon photoluminescence (TPPL) and second-harmonic generation (SHG). The spatial distributions of the nonlinear signals were determined experimentally by hyperspectral mapping with ultrashort pulsed excitation. The experimental spatial distributions of nonlinear signals agree very well with the analytical prediction based solely on photon-plasmon coupling with the momentum of the ACG, revealing the antenna function of the grating in plasmonic nonlinear signal generation. This work highlights the importance of the antenna effect of the gratings for nonlinear signal generation and provides insight into the enhancement mechanism of plasmonic gratings in addition to local hotspot engineering., Comment: 6 pages, 3 figures

Although Raman spectroscopy is widely used for the investigation of biomedical samples and has a high potential for use in clinical applications, it is not common in clinical routines. One of the factors that obstruct the integration of Raman spectroscopic tools into clinical routines is the complexity of the data processing workflow. Software tools that simplify spectroscopic data handling may facilitate such integration by familiarizing clinical experts with the advantages of Raman spectroscopy. Here, RAMANMETRIX is introduced as a user-friendly software with an intuitive web-based graphical user interface (GUI) that incorporates a complete workflow for chemometric analysis of Raman spectra, from raw data pretreatment to a robust validation of machine learning models. The software can be used both for model training and for the application of the pretrained models onto new data sets. Users have full control of the parameters during model training, but the testing data flow is frozen and does not require additional user input. RAMANMETRIX is available in two versions: as standalone software and web application. Due to the modern software architecture, the computational backend part can be executed separately from the GUI and accessed through an application programming interface (API) for applying a preconstructed model to the measured data. This opens up possibilities for using the software as a data processing backend for the measurement devices in real-time. The models preconstructed by more experienced users can be exported and reused for easy one-click data preprocessing and prediction, which requires minimal interaction between the user and the software. The results of such prediction and graphical outputs of the different data processing steps can be exported and saved.

In winter of 2020, SARS-CoV-2 emerged as a global threat, impacting not only health but also financial and political stability. To address the societal need for monitoring the spread of SARS-CoV-2, many existing diagnostic technologies were quickly adapted to detect SARS-CoV-2 RNA and antigens as well as the immune response and new testing strategies were developed to accelerate time-to-decision. In parallel, the infusion of research support accelerated the development of new spectroscopic methods. While these methods have significantly reduced the impact of SARS-CoV-2 on society when coupled with behavioral changes, they also lay the groundwork for a new generation of platform technologies. With several epidemics on the horizon, such as the rise of antibiotic-resistant bacteria, the ability to quickly pivot the target pathogen of this diagnostic toolset will continue to have an impact., Comment: 40 pages, 8 figures

In this work, we introduce the platform of plasmonic Doppler grating (PDG) to experimentally investigate the enhancement effect of plasmonic gratings in the input and output beams of nonlinear surface-enhanced coherent anti-Stokes Raman scattering (SECARS). PDGs are designable azimuthally chirped gratings that provide broadband and spatially dispersed plasmonic enhancement. Therefore, they offer the opportunity to observe and compare the overall enhancement from different combinations of enhancement in individual input and output beams. We first confirm PDG's capability of spatially separating the input and output enhancement in linear surface-enhanced fluorescence and Raman scattering. We then investigate spatially resolved enhancement in nonlinear SECARS, where coherent interaction of the pump, Stokes, and anti-Stokes beams is enhanced by the plasmonic gratings. By mapping the SECARS signal and analyzing the azimuthal angle-dependent intensity, we characterize the enhancement at individual frequencies. Together with theoretical analysis, we show that while simultaneous enhancement in the input and output beams is important for SECARS, the enhancement in the pump and anti-Stokes beams plays a more critical role in the overall enhancement than that in the Stokes beam. This work provides an insight into the enhancement mechanism of plasmon-enhanced spectroscopy, which is important for the design and optimization of plasmonic gratings. The PDG platform may also be applied to study enhancement mechanisms in other nonlinear light-matter interactions or the impact of plasmonic gratings on the fluorescence lifetime., Comment: ACS Nano, published online on 23 December 2020

Wide field Raman imaging using the integral field spectroscopy approach was used as a fast, one shot imaging method for the simultaneous collection of all spectra composing a Raman image. For the suppression of autofluorescence and background signals such as room light, shifted excitation Raman difference spectroscopy (SERDS) was applied to remove background artifacts in Raman spectra. To reduce acquisition times in wide field SERDS imaging, we adapted the nod and shuffle technique from astrophysics and implemented it into a wide field SERDS imaging setup. In our adapted version, the nod corresponds to the change in excitation wavelength, whereas the shuffle corresponds to the shifting of charges up and down on a Charge-Coupled Device (CCD) chip synchronous to the change in excitation wavelength. We coupled this improved wide field SERDS imaging setup to diode lasers with 784.4/785.5 and 457.7/458.9 nm excitation and applied it to samples such as paracetamol and aspirin tablets, polystyrene and polymethyl methacrylate beads, as well as pork meat using multiple accumulations with acquisition times in the range of 50 to 200 ms. The results tackle two main challenges of SERDS imaging: gradual photobleaching changes the autofluorescence background, and multiple readouts of CCD detector prolong the acquisition time., Comment: Accepted and Published by "Sensors" Journal, 19 pages, 8 figures

Two-Photon Microscopy (TPM) can provide three-dimensional morphological and functional contrast in vivo. Through proper staining, TPM can be utilized to create virtual, H&E equivalent images and thus can improve throughput in histology-based applications. We previously reported on a new light source for TPM that employs a compact and robust fiber-amplified, directly modulated laser. This laser is pulse-to-pulse wavelength switchable between 1064 nm, 1122 nm, and 1186 nm with an adjustable pulse duration from 50ps to 5ns and arbitrary repetition rates up to 1MHz at kW-peak powers. Despite the longer pulse duration, it can achieve similar average signal levels compared to fs-setups by lowering the repetition rate to achieve similar cw and peak power levels. The longer pulses lead to a larger number of photons per pulse, which yields single shot fluorescence lifetime measurements (FLIM) by applying a fast 4 GSamples/s digitizer. In the previous setup, the wavelengths were limited to 1064 nm and longer. Here, we use four wave mixing in a non-linear photonic crystal fiber to expand the wavelength range down to 940 nm. This wavelength is highly suitable for imaging green fluorescent proteins in neurosciences and stains such as acridine orange (AO), eosin yellow (EY) and sulforhodamine 101 (SR101) used for histology applications. In a more compact setup, we also show virtual H&E histological imaging using a direct 1030 nm fiber MOPA.

We investigate exemplary the longitudinal optical (LO) mode order in compounds with a plasmon or plasmon-like phonon mode and additional phonon modes. When the oscillator strength of the plasmon or plasmon-like mode is gradually increased, a reordering of the modes takes place. Since it is not possible in crystals with orthorhombic or higher symmetry that a LO mode crosses a transverse optical (TO) mode's position, this reordering takes place via mode hybridization. During this mode hybridization, the plasmon or plasmon-like LO mode gradually becomes the originally higher situated LO mode while the latter morphs into the former. As a consequence, an inner (LO-TO) and an outer (TO-LO) mode pair is formed. This process continues until the LO oscillator strength is so high that all other phonons are inverted and form LO-TO pairs within the outer TO-LO mode pair of the plasmon or plasmon-like mode. These insights can be readily transferred to other semiconductors or many mode materials with reststrahlen bands and allow simple mode assignments. These mode assignments will help to understand the nature of surface modes of structured layers of these materials for application of surface plasmon polariton and surface phonon polaritons based metamaterials., Comment: 13 pages, 3 figures

A classical way of describing a dielectric function employs sums of contributions from damped harmonic oscillators. Each term leads to a maximum in the imaginary part of the dielectric function at the transversal optical (TO) resonance frequency of the corresponding oscillator. In contrast, the peak maxima of the negative imaginary part of the inverse dielectric function are attributed to the so-called longitudinal optical (LO) oscillator frequencies. The shapes of the corresponding bands resemble those of the imaginary part of the dielectric function. Therefore, it seems natural to also employ sums of the contributions of damped harmonic oscillators to describe the imaginary part of the inverse dielectric function. In this contribution, we derive the corresponding dispersion relations to investigate and establish the relationship between the transversal and longitudinal optical oscillator strength, which can differ, according to experimental results, by up to three orders of magnitude. So far, these differences are not understood and prevent the longitudinal optical oscillator strengths from proper interpretation. We demonstrate that transversal and longitudinal oscillator strengths should be identical for a single oscillator and that the experimental differences are in this case due to the introduction of a dielectric background in the dispersion formula. For this effect we derive an exact correction. Based on this correction we further derive a modified Kramers-Kronig sum rule for the isotropic case as well as for the components of the inverse dielectric function tensor. For systems with more than one oscillator, our model for the isotropic case can be extended to yield oscillator strengths and LO resonance wavenumber for uncoupled LO modes with or without dielectric background...

Typical nanoparticle-based plasmonic index sensors detect the spectral shift of localized surface plasmon resonance (LSPR) upon the change of environmental index. Therefore, they require broadband illumination and spectrometers. The sensitivity and flexibility of nanoparticle-based index sensors are usually limited because LSPR peaks are usually broad and the spectral position cannot be freely designed. Here, we present a fully designable index sensing platform using a plasmonic Doppler grating (PDG), which provides broadband and azimuthal angle-dependent grating periodicities. Different from LSPR, the PDG index sensor is based on the momentum matching between photons and surface plasmons via the lattice momentum of the grating. Therefore, index change is translated into the variation of in-plane azimuthal angle for photon-to-plasmon coupling, which manifests as directly observable dark bands in the reflection image. The PDG can be freely designed to optimally match the range of index variation for specific applications. In this work, we demonstrate PDG index sensors for large (n = 1.00 to 1.52) and small index variation (n = 1.3330 to 1.3650). The tiny and nonlinear index change of water-ethanol mixture has been clearly observed and accurately quantified. Since the PDG is a dispersive device, it enables on-site and single-color index sensing without a spectrometer and provides a promising spectroscopic platform for on-chip analytical applications., Comment: July 22, 2019 published on Analytical Chemistry

In the package corr2D two-dimensional correlation analysis is implemented in R. This paper describes how two-dimensional correlation analysis is done in the package and how the mathematical equations are translated into R code. The paper features a simple tutorial with executable code for beginners, insight into at the calculations done before the correlation analysis, a detailed look at the parallelization of the fast Fourier transformation based correlation analysis and a speed test of the calculation. The package corr2D offers the possibility to preprocess, correlate and postprocess spectroscopic data using exclusively the R language. Thus, corr2D is a welcome addition to the toolbox of spectroscopists and makes two-dimensional correlation analysis more accessible and transparent.