33 results on '"Poon, Art F.Y."'
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2. A targeted reactivation of latent HIV-1 using an activator vector in patient samples from acute infection
3. Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data
4. Role of co-expressed APOBEC3F and APOBEC3G in inducing HIV-1 drug resistance
5. A systematic, deep sequencing-based methodology for identification of mixed-genotype hepatitis C virus infections
6. Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data
7. Promises and pitfalls of Illumina sequencing for HIV resistance genotyping
8. A Dual Loci Quality Assurance and Control Framework for Real-Time Evaluation of Signal Accuracy in Wastewater Surveillance of Pathogens with High Rates of Mutation
9. Deep sequencing increases hepatitis C virus phylogenetic cluster detection compared to Sanger sequencing
10. Comparative analysis of HIV sequences in real time for public health
11. A molecular phylogenetics-based approach for identifying recent hepatitis C virus transmission events
12. Potential for immune-driven viral polymorphisms to compromise antiretroviral-based preexposure prophylaxis for prevention of HIV-1 infection
13. Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison
14. Community Surveillance of Omicron in Ontario: Wastewater-based Epidemiology Comes of Age.
15. Phylodynamic Inference with Kernel ABC and Its Application to HIV Epidemiology
16. Phylogenetic clustering of hepatitis C virus among people who inject drugs in Vancouver, Canada
17. Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing
18. Detecting Signatures of Selection from DNA Sequences Using Datamonkey
19. Dates of HIV infection can be estimated for seroprevalent patients by coalescent analysis of serial next-generation sequencing data
20. Phylogenetic Analysis of Population-Based and Deep Sequencing Data to Identify Coevolving Sites in the nef Gene of HIV-1
21. Evolutionary Fingerprinting of Genes
22. A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and Its Application to Influenza A Virus
23. HIV-1 Transmission Clustering and Phylodynamics Highlight the Important Role of Young Men Who Have Sex with Men
24. An open-sourcek-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes
25. Absence of HIV-1 Drug Resistance Mutations Supports the Use of Dolutegravir in Uganda
26. Functional origins of fitness effect-sizes of compensatory mutations in the DNA bacteriophage phiX174
27. Reconstructing contact network parameters from viral phylogenies
28. Molecular and functional consequences of immune-mediated evolution in HIV-1 Nef during the North American epidemic.
29. Comparison of Population and 454 “Deep” Sequence Analysis for HIV Type 1 Tropism Versus the Original Trofile Assay in Non-B Subtypes
30. An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1
31. Compensatory mutations are repeatable and clustered within proteins
32. Immune-driven recombination and loss of control after HIV superinfection
33. The 2006 NESCent Phyloinformatics Hackathon: A Field Report
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