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Transcription termination has important regulatory functions, impacting mRNA stability, localization and translation potential. Failure to appropriately terminate transcription can also lead to read-through transcription and the synthesis of antisense RNAs which can have profound impact on gene expression. The Transcription-Export (THO/TREX) protein complex plays an important role in coupling transcription with splicing and export of mRNA. However, little is known about the role of the THO/TREX complex in the control of transcription termination. In this work, we show that two proteins of the THO/TREX complex, namely TREX COMPONENT 1 (TEX1 or THO3) and HYPER RECOMBINATION1 (HPR1 or THO1) contribute to the correct transcription termination at several loci in Arabidopsis thaliana. We first demonstrate this by showing defective termination in tex1 and hpr1 mutants at the nopaline synthase (NOS) terminator present in a T-DNA inserted between exon 1 and 3 of the PHO1 locus in the pho1-7 mutant. Read-through transcription beyond the NOS terminator and splicing-out of the T-DNA resulted in the generation of a near full-length PHO1 mRNA (minus exon 2) in the tex1 pho1-7 and hpr1 pho1-7 double mutants, with enhanced production of a truncated PHO1 protein that retained phosphate export activity. Consequently, the strong reduction of shoot growth associated with the severe phosphate deficiency of the pho1-7 mutant was alleviated in the tex1 pho1-7 and hpr1 pho1-7 double mutants. Additionally, we show that RNA termination defects in tex1 and hpr1 mutants leads to 3'UTR extensions in several endogenous genes. These results demonstrate that THO/TREX complex contributes to the regulation of transcription termination.

Interactions between zinc (Zn) and phosphate (Pi) nutrition in plants have long been recognized, but little information is available on their molecular bases and biological significance. This work aimed at examining the effects of Zn deficiency on Pi accumulation in Arabidopsis thaliana and uncovering genes involved in the Zn-Pi synergy. Wild-type plants as well as mutants affected in Pi signalling and transport genes, namely the transcription factor PHR1, the E2-conjugase PHO2, and the Pi exporter PHO1, were examined. Zn deficiency caused an increase in shoot Pi content in the wild type as well as in the pho2 mutant, but not in the phr1 or pho1 mutants. This indicated that PHR1 and PHO1 participate in the coregulation of Zn and Pi homeostasis. Zn deprivation had a very limited effect on transcript levels of Pi-starvation-responsive genes such as AT4, IPS1, and microRNA399, or on of members of the high-affinity Pi transporter family PHT1. Interestingly, one of the PHO1 homologues, PHO1;H3, was upregulated in response to Zn deficiency. The expression pattern of PHO1 and PHO1;H3 were similar, both being expressed in cells of the root vascular cylinder and both localized to the Golgi when expressed transiently in tobacco cells. When grown in Zn-free medium, pho1;h3 mutant plants displayed higher Pi contents in the shoots than wild-type plants. This was, however, not observed in a pho1 pho1;h3 double mutant, suggesting that PHO1;H3 restricts root-to-shoot Pi transfer requiring PHO1 function for Pi homeostasis in response to Zn deficiency.

As a part of the ZAIANGO IFREMER/TOTAL-FINA-ELF program, gas hydrates were collected from a gravity sediment core on the Congo–Angola margin during the ZAI-ROV cruise (December 2000). Gas hydrates, associated with a deep giant (800 m in diameter) active depression called “pockmark,” occurred from the sediment surface down to 12 m depth, at 3160 m water depth. Elevated concentrations of particles, manganese, iron, and methane detected in the water column close to the sediment surface reveal intense fluid circulation transporting methane-rich turbid fluids into the overlying bottom waters. Free gas is liberated via diffusion and/or advection and from destabilizing gas hydrates. The gas hydrates occur as small fragments and massive crystal aggregates, mostly disseminated irregularly in the highly disturbed sediment and escaping in the overlying deep seawater, creating methane-rich plumes. The dissociation of solid CH4 hydrate particles rising in a turbulent flow may explain the high heterogeneity of methane concentration and CH4 peaks measured in vertical profiles. Raman spectroscopy revealed that the gas hydrates recovered from the Congo–Angola are mainly 100% methane gas hydrate of structure I cubic with a lattice constant of a=12 A°, but H2S and CO2 are co-clathrated with CH4 in cages. Analyses of hydrate water show depletions of Cl, SO4, Na, Mg, Ca, and Sr, and enrichments of Si, Cs, and Ba, compared to the ambient deep seawater. Gas analysis shows that methane is the major component (99.1%), but CO2 (0.83%) and heavier gases such as C2H6 (0.043%) and H2S (0.02%) are also present as traces. Helium concentrations were in the range of 0.04–1.3 ppm, with slightly radiogenic 3He/4He ratios between 6.6×10−7 and 7.6×10−7. The hydrate methane has δ13C of −69.3‰ (PDB) and δD of −199‰ (V-SMOW), and the hydrate CO2 has δ13C of −17.5‰ (PDB). These values indicate a primarily microbial origin for the CH4, which is generated through bacterial CO2 reduction, as previously observ