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We describe a data-efficient, kernel-based approach to statistical testing of conditional independence. A major challenge of conditional independence testing, absent in tests of unconditional independence, is to obtain the correct test level (the specified upper bound on the rate of false positives), while still attaining competitive test power. Excess false positives arise due to bias in the test statistic, which is obtained using nonparametric kernel ridge regression. We propose three methods for bias control to correct the test level, based on data splitting, auxiliary data, and (where possible) simpler function classes. We show these combined strategies are effective both for synthetic and real-world data.

A growing literature in computational neuroscience leverages gradient descent and learning algorithms that approximate it to study synaptic plasticity in the brain. However, the vast majority of this work ignores a critical underlying assumption: the choice of distance for synaptic changes - i.e. the geometry of synaptic plasticity. Gradient descent assumes that the distance is Euclidean, but many other distances are possible, and there is no reason that biology necessarily uses Euclidean geometry. Here, using the theoretical tools provided by mirror descent, we show that the distribution of synaptic weights will depend on the geometry of synaptic plasticity. We use these results to show that experimentally-observed log-normal weight distributions found in several brain areas are not consistent with standard gradient descent (i.e. a Euclidean geometry), but rather with non-Euclidean distances. Finally, we show that it should be possible to experimentally test for different synaptic geometries by comparing synaptic weight distributions before and after learning. Overall, our work shows that the current paradigm in theoretical work on synaptic plasticity that assumes Euclidean synaptic geometry may be misguided and that it should be possible to experimentally determine the true geometry of synaptic plasticity in the brain., Comment: ICLR 2024

We introduce the Conditional Independence Regression CovariancE (CIRCE), a measure of conditional independence for multivariate continuous-valued variables. CIRCE applies as a regularizer in settings where we wish to learn neural features $\varphi(X)$ of data $X$ to estimate a target $Y$, while being conditionally independent of a distractor $Z$ given $Y$. Both $Z$ and $Y$ are assumed to be continuous-valued but relatively low dimensional, whereas $X$ and its features may be complex and high dimensional. Relevant settings include domain-invariant learning, fairness, and causal learning. The procedure requires just a single ridge regression from $Y$ to kernelized features of $Z$, which can be done in advance. It is then only necessary to enforce independence of $\varphi(X)$ from residuals of this regression, which is possible with attractive estimation properties and consistency guarantees. By contrast, earlier measures of conditional feature dependence require multiple regressions for each step of feature learning, resulting in more severe bias and variance, and greater computational cost. When sufficiently rich features are used, we establish that CIRCE is zero if and only if $\varphi(X) \perp \!\!\! \perp Z \mid Y$. In experiments, we show superior performance to previous methods on challenging benchmarks, including learning conditionally invariant image features., Comment: ICLR 2023

Convolutional networks are ubiquitous in deep learning. They are particularly useful for images, as they reduce the number of parameters, reduce training time, and increase accuracy. However, as a model of the brain they are seriously problematic, since they require weight sharing - something real neurons simply cannot do. Consequently, while neurons in the brain can be locally connected (one of the features of convolutional networks), they cannot be convolutional. Locally connected but non-convolutional networks, however, significantly underperform convolutional ones. This is troublesome for studies that use convolutional networks to explain activity in the visual system. Here we study plausible alternatives to weight sharing that aim at the same regularization principle, which is to make each neuron within a pool react similarly to identical inputs. The most natural way to do that is by showing the network multiple translations of the same image, akin to saccades in animal vision. However, this approach requires many translations, and doesn't remove the performance gap. We propose instead to add lateral connectivity to a locally connected network, and allow learning via Hebbian plasticity. This requires the network to pause occasionally for a sleep-like phase of "weight sharing". This method enables locally connected networks to achieve nearly convolutional performance on ImageNet and improves their fit to the ventral stream data, thus supporting convolutional networks as a model of the visual stream.

We approach self-supervised learning of image representations from a statistical dependence perspective, proposing Self-Supervised Learning with the Hilbert-Schmidt Independence Criterion (SSL-HSIC). SSL-HSIC maximizes dependence between representations of transformations of an image and the image identity, while minimizing the kernelized variance of those representations. This framework yields a new understanding of InfoNCE, a variational lower bound on the mutual information (MI) between different transformations. While the MI itself is known to have pathologies which can result in learning meaningless representations, its bound is much better behaved: we show that it implicitly approximates SSL-HSIC (with a slightly different regularizer). Our approach also gives us insight into BYOL, a negative-free SSL method, since SSL-HSIC similarly learns local neighborhoods of samples. SSL-HSIC allows us to directly optimize statistical dependence in time linear in the batch size, without restrictive data assumptions or indirect mutual information estimators. Trained with or without a target network, SSL-HSIC matches the current state-of-the-art for standard linear evaluation on ImageNet, semi-supervised learning and transfer to other classification and vision tasks such as semantic segmentation, depth estimation and object recognition. Code is available at https://github.com/deepmind/ssl_hsic .

The state-of-the art machine learning approach to training deep neural networks, backpropagation, is implausible for real neural networks: neurons need to know their outgoing weights; training alternates between a bottom-up forward pass (computation) and a top-down backward pass (learning); and the algorithm often needs precise labels of many data points. Biologically plausible approximations to backpropagation, such as feedback alignment, solve the weight transport problem, but not the other two. Thus, fully biologically plausible learning rules have so far remained elusive. Here we present a family of learning rules that does not suffer from any of these problems. It is motivated by the information bottleneck principle (extended with kernel methods), in which networks learn to compress the input as much as possible without sacrificing prediction of the output. The resulting rules have a 3-factor Hebbian structure: they require pre- and post-synaptic firing rates and an error signal - the third factor - consisting of a global teaching signal and a layer-specific term, both available without a top-down pass. They do not require precise labels; instead, they rely on the similarity between pairs of desired outputs. Moreover, to obtain good performance on hard problems and retain biological plausibility, our rules need divisive normalization - a known feature of biological networks. Finally, simulations show that our rules perform nearly as well as backpropagation on image classification tasks., Comment: Accepted to NeurIPS 2020

Reservoir computing is a powerful tool to explain how the brain learns temporal sequences, such as movements, but existing learning schemes are either biologically implausible or too inefficient to explain animal performance. We show that a network can learn complicated sequences with a reward-modulated Hebbian learning rule if the network of reservoir neurons is combined with a second network that serves as a dynamic working memory and provides a spatio-temporal backbone signal to the reservoir. In combination with the working memory, reward-modulated Hebbian learning of the readout neurons performs as well as FORCE learning, but with the advantage of a biologically plausible interpretation of both the learning rule and the learning paradigm., Comment: NeurIPS 2019 workshop "Real Neurons & Hidden Units: Future directions at the intersection of neuroscience and artificial intelligence", Vancouver, Canada

We make three contributions to the theory of k-armed adversarial bandits. First, we prove a first-order bound for a modified variant of the INF strategy by Audibert and Bubeck [2009], without sacrificing worst case optimality or modifying the loss estimators. Second, we provide a variance analysis for algorithms based on follow the regularised leader, showing that without adaptation the variance of the regret is typically {\Omega}(n^2) where n is the horizon. Finally, we study bounds that depend on the degree of separation of the arms, generalising the results by Cowan and Katehakis [2015] from the stochastic setting to the adversarial and improving the result of Seldin and Slivkins [2014] by a factor of log(n)/log(log(n))., Comment: 14 pages

We propose a method for low-rank semidefinite programming in application to the semidefinite relaxation of unconstrained binary quadratic problems. The method improves an existing solution of the semidefinite programming relaxation to achieve a lower rank solution. This procedure is computationally efficient as it does not require projecting on the cone of positive-semidefinite matrices. Its performance in terms of objective improvement and rank reduction is tested over multiple graphs of large-scale Gset graph collection and over binary optimization problems from the Biq Mac collection.

The paper investigates the problem of fitting protein complexes into electron density maps. They are represented by high-resolution cryoEM density maps converted into overlapping matrices and partly show a structure of a complex. The general purpose is to define positions of all proteins inside it. This problem is known to be NP-hard, since it lays in the field of combinatorial optimization over a set of discrete states of the complex. We introduce quadratic programming approaches to the problem. To find an approximate solution, we convert a density map into an overlapping matrix, which is generally indefinite. Since the matrix is indefinite, the optimization problem for the corresponding quadratic form is non-convex. To treat non-convexity of the optimization problem, we use different convex relaxations to find which set of proteins minimizes the quadratic form best., Comment: in Information Technology and Systems 2016, Sep 2016, Repino, St. Petersburg, Russia. 2016