1,502 results on '"Plating efficiency"'
Search Results
2. Efficient and rapid system of plant regeneration via protoplast cultures of Fagopyrum esculentum Moench.
- Author
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Zaranek, Magdalena, Pérez-Pérez, Reneé, Milewska-Hendel, Anna, Grzebelus, Ewa, and Betekhtin, Alexander
- Abstract
In the present study, a high yield of isolated protoplasts from the agronomically important crop Fagopyrum esculentum was obtained by applying a mixture of cellulase, pectolyase, and driselase. We demonstrated that the yield of morphogenic callus-derived protoplasts was 1 × 10
6 protoplasts per g of fresh tissue. For hypocotyls used as the protoplast source, the number of released cells was twice lower. The protoplasts, embedded in an agarose matrix and cultured in a modified Kao and Michayluk media supplemented with phytosulfokine, re-enter the cell cycle and start to develop, forming microcalli. The plating efficiency was about 20% in the case of hypocotyl- and morphogenic callus-derived protoplasts. For plant regeneration, the medium was supplemented with different combinations of cytokinin. Somatic embryogenesis and organogenesis occur during the cultivation of the protoplast-derived tissues, depending on the applied protoplast source. For the first time, an effective protoplast-to-plant system for F. esculentum has been developed. Key message: Morphogenic callus- and hypocotyl-derived protoplasts of buckwheat after embedding in agarose beads and culture in phytosulfokine enriched medium regenerated into plants. [ABSTRACT FROM AUTHOR]- Published
- 2023
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3. Promotive effect of phytosulfokine - peptide growth factor - on protoplast cultures development in Fagopyrum tataricum (L.) Gaertn.
- Author
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Zaranek, Magdalena, Pérez-Pérez, Reneé, Milewska-Hendel, Anna, Betekhtin, Alexander, and Grzebelus, Ewa
- Subjects
- *
SOMATIC embryogenesis , *REGENERATION (Botany) , *ALGINATES , *PLANT metabolites , *PROTOPLASTS , *CELL division , *BUCKWHEAT - Abstract
Background: Fagopyrum tataricum (Tartary buckwheat) is a valuable crop of great nutritional importance due to its high level of bioactive compounds. Excellent opportunities to obtain plants with the high level or the desired profile of valuable metabolites may be provided by in vitro cultures. Among known in vitro techniques, protoplast technology is an exciting tool for genetic manipulation to improve crop traits. In that context, protoplast fusion may be applied to generate hybrid cells between different species of Fagopyrum. To apply protoplast cultures to the aforementioned approaches in this research, we established the protoplast-to-plant system in Tartary buckwheat. Results: In this work, cellulase and pectinase activity enabled protoplast isolation from non-morphogenic and morphogenic callus (MC), reaching, on average, 2.3 × 106 protoplasts per g of fresh weight. However, to release protoplasts from hypocotyls, the key step was the application of driselase in the enzyme mixture. We showed that colony formation could be induced after protoplast embedding in agarose compared to the alginate matrix. Protoplasts cultured in a medium based on Kao and Michayluk supplemented with phytosulfokine (PSK) rebuilt cell walls, underwent repeated mitotic division, formed aggregates, which consequently led to callus formation. Plating efficiency, expressing the number of cell aggregate formed, in 10-day-old protoplast cultures varied from 14% for morphogenic callus to 30% for hypocotyls used as a protoplast source. However plant regeneration via somatic embryogenesis and organogenesis occurred only during the cultivation of MC-derived protoplasts. Conclusions: This study demonstrated that the applied protoplast isolation approach facilitated the recovery of viable protoplasts. Moreover, the embedding of protoplasts in an agarose matrix and supplementation of a culture medium with PSK effectively stimulated cell division and further development of Tartary buckwheat protoplast cultures along with the plant regeneration. Together, these results provide the first evidence of developing a protoplast-to-plant system from the MC of Fagopyrum tataricum used as source material. These findings suggest that Tartary buckwheat's protoplast cultures have potential implications for the species' somatic hybridization and genetic improvement. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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4. A Fresh Approach to a Special Type of the Luria–Delbrück Distribution.
- Author
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Zheng, Qi
- Subjects
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HYPERGEOMETRIC functions , *ALGORITHMS - Abstract
The mutant distribution that accommodates both fitness and plating efficiency is an important class of the Luria–Delbrück distribution. Practical algorithms for computing this distribution do not coincide with the theoretically most elegant ones, as existing generic methods often either produce unreliable results or freeze the computational process altogether when employed to solve real-world research problems. Exploiting properties of the hypergeometric function, this paper offers an algorithm that considerably expands the scope of application of this important class of the Luria–Delbrück distribution. An integration method is also devised to complement the novel algorithm. Asymptotic properties of the mutant probability are derived to help gauge the new algorithm. An illustrative example and simulation results provide further guidelines on the use of the new algorithm. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
5. The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation
- Author
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Nikko Brix, Daniel Samaga, Roman Hennel, Katharina Gehr, Horst Zitzelsberger, and Kirsten Lauber
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Clonogenic assay ,Colony formation assay ,Reproductive survival ,Plating efficiency ,Cellular cooperation ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The clonogenic assay is a versatile and frequently used tool to quantify reproductive cell survival in vitro. Current state-of-the-art analysis relies on plating efficiency-based calculations which assume a linear correlation between the number of cells seeded and the number of colonies counted. The present study was designed to test the validity of this assumption and to evaluate the robustness of clonogenic survival results obtained. Methods A panel of 50 established cancer cell lines was used for comprehensive evaluation of the clonogenic assay procedure and data analysis. We assessed the performance of plating efficiency-based calculations and examined the influence of critical experimental parameters, such as cell density seeded, assay volume, incubation time, as well as the cell line-intrinsic factor of cellular cooperation by auto-/paracrine stimulation. Our findings were integrated into a novel mathematical approach for the analysis of clonogenic survival data. Results For various cell lines, clonogenic growth behavior failed to be adequately described by a constant plating efficiency, since the density of cells seeded severely influenced the extent and the dynamics of clonogenic growth. This strongly impaired the robustness of survival calculations obtained by the current state-of-the-art method using plating efficiency-based normalization. A novel mathematical approach utilizing power regression and interpolation of matched colony numbers at different irradiation doses applied to the same dataset substantially reduced the impact of cell density on survival results. Cellular cooperation was observed to be responsible for the non-linear clonogenic growth behavior of a relevant number of cell lines and the impairment of survival calculations. With 28/50 cell lines of different tumor entities showing moderate to high degrees of cellular cooperation, this phenomenon was found to be unexpectedly common. Conclusions Our study reveals that plating efficiency-based analysis of clonogenic survival data is profoundly compromised by cellular cooperation resulting in strongly underestimated assay-intrinsic errors in a relevant proportion of established cancer cell lines. This severely questions the use of plating efficiency-based calculations in studies aiming to achieve more than semiquantitative results. The novel approach presented here accounts for the phenomenon of cellular cooperation and allows the extraction of clonogenic survival results with clearly improved robustness.
- Published
- 2020
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6. A Fresh Approach to a Special Type of the Luria–Delbrück Distribution
- Author
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Qi Zheng
- Subjects
mutation rate ,fitness ,plating efficiency ,hypergeometric function ,Mathematics ,QA1-939 - Abstract
The mutant distribution that accommodates both fitness and plating efficiency is an important class of the Luria–Delbrück distribution. Practical algorithms for computing this distribution do not coincide with the theoretically most elegant ones, as existing generic methods often either produce unreliable results or freeze the computational process altogether when employed to solve real-world research problems. Exploiting properties of the hypergeometric function, this paper offers an algorithm that considerably expands the scope of application of this important class of the Luria–Delbrück distribution. An integration method is also devised to complement the novel algorithm. Asymptotic properties of the mutant probability are derived to help gauge the new algorithm. An illustrative example and simulation results provide further guidelines on the use of the new algorithm.
- Published
- 2022
- Full Text
- View/download PDF
7. Accelerated Electrochemical Investigation of Li Plating Efficiency as Key Parameter for Li Metal Batteries Utilizing a Scanning Droplet Cell
- Author
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Edgar Ventosa, Wolfgang Schuhmann, and Stefan Dieckhöfer
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Materials science ,Plating efficiency ,Li metal, Li plating, automatization, scanning electrochemical technique, high-throughput ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Electrochemistry ,7. Clean energy ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Metal ,Chemical engineering ,visual_art ,visual_art.visual_art_medium ,Key (cryptography) ,0210 nano-technology - Abstract
The scanning droplet cell (SDC) allows for automatized electrochemical experiments leading to time-saving and reproducible experimental conditions. Its implementation for non-aqueous battery research is discussed, and the necessary adaptations to be operated inside an Ar-filled glovebox in complete absence of oxygen and moisture are described. Due to the importance of the use of Li metal electrodes for next-generation high-energy batteries, the complex multi-parameter optimisation of the Li plating/stripping processes are investigated by means of the SDC. In particular, the influence of pulsed Li plating protocols on the coulombic efficiency is evaluated. The results clearly show that fine tuning of the parameters of pulsed Li plating protocols, i. e. the relaxation period and Li plating duration, is required to improve Li plating efficiencies at high current densities.
- Published
- 2021
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8. Application of Cell Cultures to Toxicology
- Author
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Freshney, Ian, Stacey, Glyn N., editor, Doyle, Alan, editor, and Ferro, Margherita, editor
- Published
- 2001
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9. Sample size determination for the fluctuation experiment.
- Author
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Zheng, Qi
- Subjects
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MICROBIAL mutation , *MICROBIAL genetics , *PLANNING , *GENETIC mutation , *ALGORITHMS - Abstract
The Luria–Delbrück fluctuation experiment protocol is increasingly employed to determine microbial mutation rates in the laboratory. An important question raised at the planning stage is “How many cultures are needed?” For over 70 years sample sizes have been determined either by intuition or by following published examples where sample sizes were chosen intuitively. This paper proposes a practical method for determining the sample size. The proposed method relies on existing algorithms for computing the expected Fisher information under two commonly used mutant distributions. The role of partial plating in reducing sample size is discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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10. Agarose-induced embryoid formation in sunflower protoplasts is triggered by RGD-mediated membrane-matrix adhesion
- Author
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Petitprez, Michel, Barthou, Henri, Brière, Christian, Alibert, Gilbert, Summerfield, R. J., editor, Altman, Arie, editor, Ziv, Meira, editor, and Izhar, Shamay, editor
- Published
- 1999
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11. Effect of the THBS1 Gene Knockout on the Radiation-Induced Cellular Response in a Model System In Vitro
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Igor N. Lebedev, R. R. Savchenko, E. S. Sukhikh, A. A. Murashkina, S. A. Vasilyev, L. G. Sukhikh, and Veniamin S. Fishman
- Subjects
0106 biological sciences ,0303 health sciences ,Plating efficiency ,biology ,DNA repair ,biology.organism_classification ,01 natural sciences ,Cell biology ,HeLa ,03 medical and health sciences ,Apoptosis ,Cell culture ,Genetics ,Radiosensitivity ,Gene ,Gene knockout ,030304 developmental biology ,010606 plant biology & botany - Abstract
In this study, the effect of the THBS1 gene knockout on the survival of human tumor cells, the frequency of spontaneous and radiation-induced micronuclei, and the expression profile of genes in the HeLa cell line was investigated. It was shown that the THBS1 gene knockout led to a decrease in the plating efficiency before and after irradiation (1.4-fold, p = 0.0002 and 1.7-fold, p = 0.00009, respectively) and an increase in the frequency of spontaneous and radiation-induced micronuclei (1.9-fold, p = 0.02 and 2.5-fold, p = 0.01, respectively). In addition, expression of genes involved in the DNA repair processes, apoptosis, and G2/M cell cycle checkpoint was changed after THBS1 knockout in comparison with the intact HeLa cell line. Thus, the THBS1 gene knockout leads to an increase in the radiosensitivity of the HeLa cell line. This indicates the possible role of the THBS1 gene in the regulation of a radiation-induced cellular response.
- Published
- 2020
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12. Human Dental Pulp Stem Cells Exhibit Osteogenic Differentiation Potential
- Author
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Sadia Awais, Mahmood S Choudhery, Samira Shabbir Balouch, and Nabeela Riaz
- Subjects
0301 basic medicine ,Molar ,Plating efficiency ,impacted tooth ,QH301-705.5 ,Population ,Biology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,stomatognathic system ,Dental pulp stem cells ,medicine ,Biology (General) ,education ,Bone regeneration ,education.field_of_study ,General Immunology and Microbiology ,third molars ,General Neuroscience ,Osteoblast ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,osteoblast ,human dental pulp stem cells ,dental pulp ,General Agricultural and Biological Sciences ,Cell based ,Explant culture ,Research Article - Abstract
Bone regeneration after trauma, pathologic and surgical procedures is considered a major medical challenge. Due to limitations in using conventional approaches, cell based regenerative strategies may provide an alternative option to address such issues. In the current study, we sought to determine the osteogenic potential of dental pulp stem cells (DPSCs) isolated from impacted 3rd molars. DPSCs were isolated from human dental pulp tissue (n=6) using explant culture. Growth characteristics of DPSCs were determined using plating efficiency, and the number and time of population doublings. After characterization, DPSCs were induced to differentiate into osteoblasts and were assessed using polymerase chain reactions (PCR) and histological analysis. Results indicated that DPSCs can be isolated from impacted human third molars, and that DPSCs exhibited typical fibroblastic morphology and excellent proliferative potential. In addition, morphological changes, histological analysis and expression of lineage specific genes confirmed osteogenic differentiation of DPSCs. In conclusion, DPSCs isolated from impacted 3rd molars have high proliferative potential and ability to differentiate into osteoblasts.
- Published
- 2020
13. Electroless Plating of Palladium Membranes on Porous Substrates for Hydrogen Separation and the Effects of Process Factors on Plating Rate and Efficiency: A Review
- Author
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Abubakar Alkali
- Subjects
Plating efficiency ,Materials science ,Reducing agent ,020209 energy ,Hydrazine ,Proton exchange membrane fuel cell ,chemistry.chemical_element ,020206 networking & telecommunications ,02 engineering and technology ,chemistry.chemical_compound ,Membrane ,Chemical engineering ,chemistry ,Plating ,0202 electrical engineering, electronic engineering, information engineering ,Surface modification ,Palladium - Abstract
The electroless plating of palladium and palladium alloy membranes is fast becoming an important and enabling technology. This is more so when juxtaposed with the rising demand for high purity hydrogen for applications particularly in proton exchange membrane fuel cells (PEMFC). The effect of process factors such as sensitization and activation during surface modification, concentration of the reducing agent, plating temperature, time, pH, additives, air aeration on plating efficiency, quality of the palladium film and deposit morphology is reviewed with the aim of identifying areas requiring further investigation. The paper also reviews how these process factors could be optimised for better plating efficiency and overall membrane quality. The concentration of the reducing agent has been identified as the limiting factor on plating efficiency albeit other process factors separately impact on the plating efficiency. Furthermore, bulk precipitation caused by concentration of the reducing agent has been identified as a major problem during electroless plating with hydrazine based plating baths. To ameliorate this problem, a multi step addition of the hydrazine reducer in separate portions has been recommended.
- Published
- 2020
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14. Colony Cultures
- Author
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Fedoroff, Sergey, Richardson, Arleen, Fedoroff, Sergey, editor, and Richardson, Arleen, editor
- Published
- 1997
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15. Plating Efficiency
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Vohr, Hans-Werner, editor
- Published
- 2016
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16. Pestoides F, a Yersinia pestis Strain Lacking Plasminogen Activator, is Virulent by the Aerosol Route
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Worsham, Patricia L., Roy, Chad, Back, Nathan, editor, Cohen, Irun R., editor, Kritchevsky, David, editor, Lajtha, Abel, editor, Paoletti, Rodolfo, editor, Skurnik, Mikael, editor, Bengoechea, José Antonio, editor, and Granfors, Kaisa, editor
- Published
- 2003
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17. Efficient, robust, and versatile fluctuation data analysis using MLE MUtation Rate calculator (mlemur).
- Author
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Łazowski, Krystian
- Subjects
- *
DATA analysis , *LIKELIHOOD ratio tests , *MICROORGANISM populations , *STATISTICAL power analysis , *CALCULATORS , *CELL death - Abstract
The fluctuation assay remains an important tool for analyzing the levels of mutagenesis in microbial populations. The mutant counts originating from some average number of mutations are usually assumed to obey the Luria–Delbrück distribution. While several tools for estimating mutation rates are available, they sometimes lack accuracy or versatility under non-standard conditions. In this work, extensions to the Luria–Delbrück protocol to account for phenotypic lag and cellular death with either perfect or partial plating were developed. Hence, the novel MLE MUtation Rate calculator, or mlemur, is the first tool that provides a user-friendly graphical interface allowing the researchers to model their data with consideration for partial plating, differential growth of mutants and non-mutants, phenotypic lag, cellular death, variability of the final number of cells, post-exponential-phase mutations, and the size of the inoculum. Additionally, mlemur allows the users to incorporate most of these special conditions at the same time to obtain highly accurate estimates of mutation rates and P values, confidence intervals for an arbitrary function of data (such as fold), and perform power analysis and sample size determination for the likelihood ratio test. The accuracy of point and interval estimates produced by mlemur against historical and simulated fluctuation experiments are assessed. Both mlemur and the analyses in this work might be of great help when evaluating fluctuation experiments and increase the awareness of the limitations of the widely-used Lea–Coulson formulation of the Luria–Delbrück distribution in the more realistic biological contexts. • A new tool for fluctuation data analysis, mlemur, is introduced. • mlemur combines relaxations of different assumptions of the fluctuation protocol. • Extensions for phenotypic lag and cell death with partial plating were developed. • The new extensions perform well against more biologically realistic scenarios. • Tools for calculating P values, statistical power, and sample size are available. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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18. Regeneration of Plants from Protoplasts of Adsuki Bean (Phaseolus angularis Wight)
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Ge, K. L., Wang, Y. Z., Yuan, X. M., Huang, P. M., Yang, J. S., Huang, J. Q., Tan, C. C., Lee, N., Testa, D., and Bajaj, Y. P. S., editor
- Published
- 1993
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19. Comparing mutation rates under the Luria-Delbrück protocol.
- Author
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Zheng, Qi
- Abstract
Comparison of microbial mutation rates under the Luria-Delbrück protocol is a routine laboratory task. However, execution of this important task has been hampered by the lack of proper statistical methods. Visual inspection or improper use of the t test and the Mann-Whitney test can impair the quality of genetic research. This paper proposes a unified framework for constructing likelihood ratio tests that overcome three important obstacles to the proper comparison of microbial mutation rates. Specifically, algorithms for likelihood ratio tests have been devised that allow for partial plating, differential growth rates and unequal terminal cell population sizes. The new algorithms were assessed by computer simulations. In addition, a strategy for multiple comparison was illustrated by reanalyzing the experimental data from a study of bacterial resistance against tuberculosis antibiotics. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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20. Antioxidants Influence the Plating Efficiency and Microcallus-Growth of Protoplasts in Lolium Perenne L.
- Author
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Creemers-Molenaar, J., Van Oort, Y., Bliss, F. A., editor, Nijkamp, H. J. J., editor, Van Der Plas, L. H. W., editor, and Van Aartrijk, J., editor
- Published
- 1990
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21. Effect of temperature on ultrasound-assisted electroless nickel-boron plating
- Author
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Véronique Vitry and Luiza Bonin
- Subjects
inorganic chemicals ,Materials science ,Plating efficiency ,Acoustics and Ultrasonics ,Tribocorrosion ,Organic Chemistry ,02 engineering and technology ,engineering.material ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Evaporation (deposition) ,0104 chemical sciences ,Corrosion ,Inorganic Chemistry ,Electroless nickel ,Coating ,Plating ,engineering ,Chemical Engineering (miscellaneous) ,Environmental Chemistry ,Radiology, Nuclear Medicine and imaging ,Composite material ,0210 nano-technology ,Electroplating - Abstract
Electroless nickel-boron coatings have several advantages over electroplated nickel and electroless nickel-phosphorous: they are harder than both other coatings and, as all electroless coatings, can be applied easily to complex shapes and all substrates, even non conducting ones, contrary to electroplated coatings. Preliminary testing has proved that ultrasound assistance helps improve their properties by increasing the plating rate while conserving the properties of the coating. In this study, the effect of plating temperature on mechanically agitated and ultrasonic assisted electroless nickel-boron deposition was investigated: deposition was performed in two different configurations: one with a classical mechanical agitation at 300 rpm and the other employing ultrasound at a frequency of 35 kHz. In addition, different temperatures in the 80–95 °C range were tested. The increase of plating rate previously observed was confirmed and it was possible to lower slightly plating temperature while conserving plating efficiency, which decreases evaporation of the solution. Morphological, mechanical, corrosion and wear characterization were performed on the coatings, as well as tribocorrosion studies in an alkaline environment (0.1 M NaCl). Ultrasound-assisted coatings presented tribocorrosion behaviour that was similar or better than the standard ones.
- Published
- 2019
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22. Application of the salt stress to the protoplast cultures of the carrot (Daucus carota L.) and evaluation of the response of regenerants to soil salinity
- Author
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Katarzyna Maćkowska, Agnieszka Lis-Krzyścin, Ewa Grzebelus, and Agnieszka Kiełkowska
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0106 biological sciences ,Soil salinity ,Plating efficiency ,biology ,fungi ,food and beverages ,Plant physiology ,Horticulture ,Protoplast ,medicine.disease_cause ,biology.organism_classification ,01 natural sciences ,Salinity ,Pollen ,medicine ,Ploidy ,010606 plant biology & botany ,Daucus carota - Abstract
This is the first study to generate carrot plants for enhanced salinity tolerance using a single-cell in vitro system. Protoplasts of three carrot accessions were exposed to treatment by seven different concentrations of NaCl (10–400 mM). Salt concentrations higher than 50 mM decreased plating efficiency and those of 200–400 mM of NaCl completely arrested mitotic divisions of cultured cells. The protoplast-derived plants from the control and 50–100 mM NaCl treatment were subjected to an 8-week salt stress in greenhouse conditions induced by salinized soil (EC 3 and 6 mS cm−1). 50 mM NaCl stress applied in vitro induced polyploidy among regenerated plants. The regenerants obtained from the 50 and 100 mM NaCl-treated protoplast cultures grown in saline soil had a higher survival rate compared to the regenerants from the control cultures. The salt-stressed plants accumulated anthocyanins in petioles and produced denser hairs on leaves and petioles in comparison to the control plants. Salt stress influenced pollen viability and seed setting of obtained regenerants. The results suggest that salt stress applied in vitro in protoplast cultures creates variation which allows alleviating the negative effects of salt stress on the development and reproduction of the carrot. Salt stress applied to carrot protoplasts generates variability manifested in differences in cellular response and variation in ploidy. The adaptation of carrot regenerants to soil salinity was associated with accumulation of anthocyanins and increased hairiness.
- Published
- 2019
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23. The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation
- Author
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Brix, Nikko, Samaga, Daniel, Hennel, Roman, Gehr, Katharina, Zitzelsberger, Horst, and Lauber, Kirsten
- Published
- 2020
- Full Text
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24. A new practical guide to the Luria–Delbrück protocol.
- Author
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Zheng, Qi
- Subjects
- *
ACCURACY , *CELL populations , *GENETIC mutation , *MEDICAL research , *DATA analysis - Abstract
Since 2000 several review papers have been published about the analysis of experimental data obtained using the Luria–Delbrück protocol. These timely papers cleared much of the confusion surrounding various methods for estimating or comparing mutation rates. As a result, today the fluctuation test is more widely applied with much improved accuracy. The present paper provides guidelines on a few remaining problems that continue to baffle mutation researchers. Among the issues addressed are incomplete plating, relative fitness, and comparison of experiments where average final cell population sizes differ. It also offers a fresh view on the estimation methods that are based on the sample median. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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25. Optimizing Protocols for Arabidopsis Shoot and Root Protoplast Cultivation
- Author
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Ivan A. Paponov, Taras Pasternak, and Serhii Kondratenko
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0106 biological sciences ,0301 basic medicine ,reprograming ,Plating efficiency ,Cell division ,Arabidopsis thaliana ,Plant Science ,01 natural sciences ,Article ,03 medical and health sciences ,protoplasts ,Auxin ,lcsh:Botany ,Arabidopsis ,Ecology, Evolution, Behavior and Systematics ,Reprograming ,chemistry.chemical_classification ,Ecology ,biology ,Protoplasts ,fungi ,food and beverages ,Protoplast ,Cell cycle ,Plant cell ,biology.organism_classification ,lcsh:QK1-989 ,Cell biology ,030104 developmental biology ,chemistry ,auxin ,010606 plant biology & botany - Abstract
Procedures for the direct regeneration of entire plants from a shoot and root protoplasts of Arabidopsis thaliana have been optimized. The culture media for protoplast donor-plant cultivation and protoplast culture have been adjusted for optimal plant growth, plating efficiency, and promotion of shoot regeneration. Protocols have been established for the detection of all three steps in plant regeneration: (i) chromatin relaxation and activation of auxin biosynthesis, (ii) cell cycle progression, and (iii) conversion of cell-cycle active cells to totipotent ones. The competence for cell division was detected by DNA replication events and required high cell density and high concentrations of the auxinic compound 2,4-D. Cell cycle activity and globular structure formation, with subsequent shoot induction, were detected microscopically and by labeling with fluorescent dye Rhodamine123. The qPCR results demonstrated significantly upregulated expression of the genes responsible for nuclear reorganization, auxin responses, and auxin biosynthesis during the early stage of cell reprogramming. We further optimized cell reprogramming with this protocol by applying glutathione (GSH), which increases the sensitivity of isolated mesophyll protoplasts to cell cycle activation by auxin. The developed protocol allows us to investigate the molecular mechanism of the de-differentiation of somatic plant cells.
- Published
- 2021
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26. Cytotoxic and Pro-Apoptotic Properties of Ethyl-p-Methoxycinnamate and Its Hydrophilic Derivative Potassium-p-Methoxycinnamate
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Umar, Muhammad Ihtisham, Iqbal, Muhammad Adnan, Khadeer Ahamed, Mohamed B., Altaf, Rabia, Hassan, Loiy Elsir Ahmed, Haque, Rosenani A., Abdul Majeed, A. M. S., and Asmawi, Mohd Zaini
- Published
- 2018
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27. Plant regeneration from leaf-derived protoplasts within the Daucus genus: effect of different conditions in alginate embedding and phytosulfokine application.
- Author
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Maćkowska, Katarzyna, Jarosz, Agata, and Grzebelus, Ewa
- Abstract
Protoplasts of four Daucus carota subspecies and three wild Daucus species were isolated from 2-week-old shoot cultures during overnight incubation in an enzyme mixture composed of 1 % (w/v) cellulase Onozuka R-10 and 0.1 % (w/v) pectolyase Y-23. Before the culture, they were embedded in autoclave- or filter-sterilized alginate solution. Modified thin alginate layer (TAL) and extra thin alginate film (ETAF) techniques were applied for protoplast immobilization. A rich mineral-organic medium based on the formulation of Kao and Michayluk supplemented with 0.1 mg l 2,4-dichlorophenoxyacetic acid, 0.2 mg l zeatin, and optionally 100 nM phytosulfokine (PSK), a peptidyl plant growth factor, was used for protoplast culture. Plating efficiency was genotype-dependent and in 40-day-old cultures, it varied from 10 % for Daucus pusillus to 73 % for D. carota subsp. sativus. A considerably higher ability in colony formation was observed in the modified TAL culture system using filter-sterilized alginate and in the presence of PSK in the protoplast culture medium. Plant regeneration through somatic embryogenesis stimulated by PSK application occurred for five out of the seven Daucus accessions used in the present study. We believe our data may facilitate the use of wild Daucus in somatic hybridization with cultivated carrot. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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28. An experimental aerosol air-agar interface mouse lymphoma assay methodology
- Author
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Joanne Kilford, Debbie Dillon, Mark Ballantyne, Julie Clements, Annette Dalrymple, Marianna Gaҫa, M. Hollings, David Thorne, Clive Meredith, and Rebecca Payne
- Subjects
0301 basic medicine ,Plating efficiency ,food.ingredient ,Lymphoma ,Health, Toxicology and Mutagenesis ,010501 environmental sciences ,Electronic Nicotine Delivery Systems ,01 natural sciences ,Suspension (chemistry) ,Cell Line ,Matrix (chemical analysis) ,03 medical and health sciences ,Mice ,food ,Smoke ,Genetics ,Agar ,Animals ,Humans ,0105 earth and related environmental sciences ,Aerosols ,Chromatography ,Dose-Response Relationship, Drug ,Chemistry ,Mutagenicity Tests ,Air ,In vitro ,Aerosol ,030104 developmental biology ,Cell culture ,Mutagens - Abstract
This work investigates a completely novel and experimental concept of exposing L5178Y cells at the air-agar-interface to mainstream cigarette smoke aerosol (Kentucky reference 3R4F). This study highlights the associated challenges of combining a suspension cell line alongside an in vitro aerosol exposure system. To achieve a monolayer, cells were 'seeded' in a concentrated cell super-mix suspension onto an RPMI/agar-matrix -base. The resulting cell suspension media was adsorbed into the agar base leaving the L5178Y cells lightly suspended on the agar surface, approximating a monolayer. Cells were deemed supportable on the agar-matrix, viable and recoverable. Using Vitrocell VC 10 exposure system and the Ames 4 exposure module, L5178Y cells were successfully exposed to a dynamic cigarette smoke aerosol, recovered and assessed for mutant frequencies, using standard assay procedures. Method development included assessment of flowing air conditions, plating efficiency and recovery of L5178Y cells from the agar-matrix surface. Positive controls MMS and B[a]P were successfully incorporated into the agar-matrix and metabolic activation was achieved by S-9 incorporation into the same agar-base-matrix. B[a]P demonstrated metabolic activation and positive response, suggesting a clear cellular interaction with the agar-matrix. Whole smoke exposed cells in the presence of metabolic activation showed a clear dose response and increasing mutant frequencies, well in excess of the controls (air and incubator) and the global evaluation factor following a 2 or 3 day expression period. This experimental concept demonstrates that L5178Y cells can be exposed to cigarette smoke aerosol, using a completely novel and a previously untested approach. Although this work successfully demonstrates the approach is viable and cells can be plated and maintained on an agar-matrix, more optimisation and robustness assessment is required before it can be considered fully adapted and used alongside other whole aerosol methodologies for the assessment of cigarette smoke and other inhaled aerosols.
- Published
- 2020
29. Effects of Titanium Dioxide Nanoparticles on the Hprt Gene Mutations in V79 Hamster Cells
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Ricard Marcos, Laura Rubio, Alba García-Rodríguez, Naouale El Yamani, Magdalena Barancokova, Maria Dusinska, and Alena Kazimirova
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Plating efficiency ,General Chemical Engineering ,Mutant ,education ,hprt ,Hprt ,Hamster ,02 engineering and technology ,010501 environmental sciences ,Gene mutation ,medicine.disease_cause ,01 natural sciences ,Article ,Chinese hamster ,lcsh:Chemistry ,chemistry.chemical_compound ,V79 cells ,medicine ,General Materials Science ,Hypoxanthine ,0105 earth and related environmental sciences ,biology ,genotoxicity ,technology, industry, and agriculture ,Titanium dioxide nanoparticles ,respiratory system ,021001 nanoscience & nanotechnology ,biology.organism_classification ,3. Good health ,lcsh:QD1-999 ,chemistry ,Hypoxanthine-guanine phosphoribosyltransferase ,Biophysics ,Genotoxicity ,titanium dioxide nanoparticles ,0210 nano-technology - Abstract
The genotoxicity of anatase/rutile TiO2 nanoparticles (TiO2 NPs, NM105 at 3, 15 and 75 µ, g/cm2) was assessed with the mammalian in-vitro Hypoxanthine guanine phosphoribosyl transferase (Hprt) gene mutation test in Chinese hamster lung (V79) fibroblasts after 24 h exposure. Two dispersion procedures giving different size distribution and dispersion stability were used to investigate whether the effects of TiO2 NPs depend on the state of agglomeration. TiO2 NPs were fully characterised in the previous European FP7 projects NanoTEST and NanoREG2. Uptake of TiO2 NPs was measured by transmission electron microscopy (TEM). TiO2 NPs were found in cytoplasmic vesicles, as well as close to the nucleus. The internalisation of TiO2 NPs did not depend on the state of agglomeration and dispersion used. The cytotoxicity of TiO2 NPs was measured by determining both the relative growth activity (RGA) and the plating efficiency (PE). There were no substantial effects of exposure time (24, 48 and 72 h), although a tendency to lower RGA at longer exposure was observed. No significant difference in PE values and no increases in the Hprt gene mutant frequency were found in exposed relative to unexposed cultures in spite of evidence of uptake of NPs by cells.
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- 2020
30. Umbilical Cord Tissue Derived Mesenchymal Stem Cells Can Differentiate into Skin Cells
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Nakhshab Choudhry, Qandeel Fatima, and Mahmood S Choudhery
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keratinocytes ,0301 basic medicine ,Plating efficiency ,QH301-705.5 ,Biology ,Regenerative medicine ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Tissue engineering ,fibroblasts ,medicine ,CD90 ,cord tissue ,Biology (General) ,Fibroblast ,mesenchymal stem cells ,General Immunology and Microbiology ,General Neuroscience ,Mesenchymal stem cell ,CD44 ,skin cells ,030104 developmental biology ,medicine.anatomical_structure ,bioengineered skin ,Cancer research ,biology.protein ,Stem cell ,General Agricultural and Biological Sciences ,Research Article - Abstract
Autologous skin grafts are used to treat severe burn wounds, however, the availability of adequate donor sites makes this option less practical. Recently, stem cells have been used successfully in tissue engineering and in regenerative medicine. The current study aims to differentiate umbilical cord tissue derived mesenchymal stem cells (CT-MSCs) into skin cells (fibroblasts and keratinocytes) for use to treat severe burn wounds. After isolation, MSCs were characterized and their growth characteristics were determined. The cells were induced to differentiate into fibroblasts and keratinocytes using respective induction medium. Results indicated that CT-MSCs were spindle shaped, plastic adherent and positive for CD29, CD44, CD73, CD90 markers. CT-MSCs also showed high proliferative potential as indicated by cumulative population doubling, doubling time and plating efficiency. The MSCs were successfully differentiated into fibroblast and keratinocytes as indicated by morphological changes and expression of lineage specific genes. We propose that these differentiated skin cells which are derived from CT-MSCs can thus be used for the development of bioengineered skin; however, further studies are required to evaluate the utility of these substitutes.
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- 2018
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31. Protoplast isolation and regeneration from Hecatonema terminale (Ectocarpales, Phaeophyceae) using a simple mixture of commercial enzymes
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Tae Oh Cho, Jose Avila-Peltroche, and Boo Yeon Won
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0106 biological sciences ,chemistry.chemical_classification ,Plating efficiency ,biology ,Chemistry ,010604 marine biology & hydrobiology ,fungi ,food and beverages ,Plant Science ,Cellulase ,biochemical phenomena, metabolism, and nutrition ,Aquatic Science ,Protoplast ,biology.organism_classification ,01 natural sciences ,Thallus ,Brown algae ,Enzyme ,Biochemistry ,biology.protein ,bacteria ,Chelation ,Ectocarpales ,010606 plant biology & botany - Abstract
Protoplast systems are essential for genome-editing and gene silencing technologies. In brown algae, protoplast isolation has been hampered by protocols that use non-commercial enzymes or crude extracts. This study is the first to report the production of protoplasts from cell-filament suspension cultures of the brown alga, Hecatonema terminale (Kutzing) Kylin, using different mixtures of commercial enzymes and chelation pre-treatment. In this study, mixture A (cellulase RS and alginate lyase) with chelation pre-treatment produced the highest number of protoplasts (3.52 ± 0.23 × 105 protoplasts g−1 FW). Chelation pre-treatment showed high effects on all kinds of enzyme mixtures. The effects of these different mixtures were examined by two-way ANOVA. We also investigate the optimal protoplast density and regeneration medium for protoplast regeneration. Of 16 combinations for regeneration media, RM1 with lowest initial protoplast density (2.4 × 103 protoplasts mL−1) showed the highest value (74%) of final plating efficiency (FPE) after 13 days of culture. The well-defined heterotrichous thalli with phaeophycean hairs were clearly distinguished after 22 days of culture.
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- 2018
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32. Isolation and Comparative Characteristics of Mesenchymal Stem-Cell Lines Derived from Foreskin of Two Donors of Similar Age
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A. S. Musorina, A. M. Koltsova, V. I. Turilova, G. G. Poljanskaya, V. V. Zenin, T. K. Yakovleva, and T. A. Krylova
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0301 basic medicine ,Plating efficiency ,biology ,CD44 ,Mesenchymal stem cell ,Cell Biology ,Embryonic stem cell ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,SOX2 ,Cell culture ,biology.protein ,Doubling time ,CD90 - Abstract
Two new nonimmortalized human cell lines FRSN-1 and FRSN-2 were established from foreskin of two similarly aged donors (2.5 years). Growth characteristics and differentiation potential of these cell lines studied on the sixth passage confirmed their status as mesenchymal stem cells (MSCs). A number of characteristics have been analyzed during long-term cultivation up to the 26th passage. The dynamics of the process of replicative senescence defined by the activity of β-galactosidase differed between these lines. However, at the 26th passage, the process of replicative senescence was equally enhanced in both lines. The plating efficiency markedly differed between the lines on the sixth passage. In FRSN-1, it was higher than in FRSN-2. The plating efficiency substantially dropped to the 26th passage in FRSN-1 and was lost in FRSN-2 line. Growth curves showed active proliferation of these lines at the 6th passage. The average doubling time did not differ between the lines and was 36.9 and 39.0 h, respectively. Analysis of growth curves on the 26th passage revealed a decline in proliferative activity and increase in average doubling time of cell populations in both lines, more in FRSN-2 than in FRSN-1 lines. The patterns of growth curves differed in these lines. Morphological analysis revealed increased cell size and spreading typical for the phase of the replicative senescence. Numerical and structural karyotypic analysis at the sixth passage showed that both lines have normal karyotype 46, XY. We did not discover interline differences in the frequency of chromosomal aberrations. To determine the status of these cell lines, comparative analysis of the surface markers was performed using flow cytometry. It was revealed that cells of both lines expressed surface antigens characteristic of human MSCs: CD44, CD73, CD90, CD105, and HLA-ABC and did not express CD34, CD45 and HLADR. Cells of both lines displayed SSEA-4 and SOX2, markers of human embryonic stem cells (ESCs). Expression of SSEA-4 was also detected at the 26th passage in both lines. FRSN-1 and FRSN-2 cells expressed the markers of early ESC differentiation into three germ layers. The ability of these cell lines to differentiate into osteogenic, chondrogenic, and adipogenic lineages was shown on the sixth passage. Both lines exhibited substantially reduced adipogenic potential on the 20th passage. These data indicate that in contrast to growth characteristics the adipogenic differentiation potential changes even with an average degree of replicative senescence. It appears that the cell replicative senescence contributed to the change in MSC differentiation potential. Overall, the results demonstrate that cell lines derived from different donors are distinguished in growth characteristics and pattern of replicative senescence. The disparity is due to a direct genetic influence and indirectly by different microenvironment in their donor organisms before cell isolation.
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- 2018
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33. Evaluation of the combined effect of NIR laser and ionizing radiation on cellular damages induced by IUdR-loaded PLGA-coated Nano-graphene oxide
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Samira Kargar, Sakine Shirvalilou, Sepideh Khoee, Samideh Khoei, and Seied Rabi Mahdavi
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Plating efficiency ,Biocompatibility ,Polyesters ,Biophysics ,Oxide ,Nanotechnology ,macromolecular substances ,02 engineering and technology ,Dermatology ,Ionizing radiation ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Cell Line, Tumor ,Idoxuridine ,Radiation, Ionizing ,Glioma ,medicine ,Humans ,Pharmacology (medical) ,Particle Size ,Cytotoxicity ,Cell damage ,health care economics and organizations ,Drug Carriers ,technology, industry, and agriculture ,021001 nanoscience & nanotechnology ,medicine.disease ,PLGA ,Oncology ,chemistry ,030220 oncology & carcinogenesis ,Nanoparticles ,Graphite ,Laser Therapy ,0210 nano-technology - Abstract
Glioma is one of the most common malignant cancers of the central nervous system (CNS). Radiatherapy and chemotherapy may be used to slow the growth of tumors that cannot be removed with surgery. The current study developed a combination therapy tool using Nanographene oxide (NGO) functionalized with poly lactic-co-glycolic acid (PLGA) as a carrier of 5-iodo-2-deoxyuridine (IUdR) for glioma cancer treatment. U87MG cells were treated in different groups with IUdR, PLGA-coated Nanographene oxide (PLGA-NGO), IUdR-loaded PLGA-coated Nanographene oxide (IUdR-PLGA-NGO), 2 Gy 6 MV X-ray radiation, and near-infrared region (NIR) laser radiation. PLGA-NGO showed excellent biocompatibility, high storage capacity for IUdR and high photothermal conversion efficiency. It was effectively employed to create cell damage in the U87MG cell line in the presence of X-ray (6 MV) and NIR laser. Moreover, IUdR-PLGA-NGO + X-ray + NIR laser significantly reduced the plating efficiency of the cells in comparison with IUdR-PLGA-NGO + X-ray and IUdR-PLGA-NGO + NIR laser. Furthermore, Prussian blue staining showed that IUdR-PLGA-NGO-SPIONs were delivered into glioblastoma cells. The PLGA-NGO loaded with IUdR under NIR and X-ray radiation exhibited the highest cytotoxicity toward U87MG cells when compared with other treatment methods, indicating efficient radio-photothermal targeted therapy.
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- 2018
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34. The influence of roughness on stem cell differentiation using 3D printed polylactic acid scaffolds
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Michael Cuiffo, Vincent Ricotta, Chung-Chueh Chang, Marcia Simon, Kuan-Che Feng, Yichen Guo, Linxi Zhang, Gary P. Halada, Adriana Pinkas-Sarafova, and Miriam Rafailovich
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Plating efficiency ,Materials science ,Fused deposition modeling ,business.industry ,3D printing ,Sharkskin ,02 engineering and technology ,General Chemistry ,Surface finish ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,law.invention ,Protein filament ,chemistry.chemical_compound ,Polylactic acid ,chemistry ,law ,Dental pulp stem cells ,0210 nano-technology ,business ,Biomedical engineering - Abstract
With the increase in popularity of 3D printing, an important question arises as to the equivalence between devices manufactured by standard methods vs. those presenting with identical bulk specifications, but manufactured via fused deposition modeling (FDM) printing. Using thermal imaging in conjunction with electron and atomic force microscopy, we demonstrate that large thermal gradients, whose distribution is difficult to predict, are associated with FDM printing and result in incomplete fusion and sharkskin of the printing filament. Even though these features are micro or submicron scale, and hence may not interfere with the intended function of the device, they can have a profound influence if the device comes in contact with living tissue. Dental pulp stem cells were cultured on substrates of identical dimensions, which were either printed or molded from the same PLA stock material. The cultures exhibited significant differences in plating efficiency, migration trajectory, and morphology at early times stemming from attempts by the cells to minimize cytoplasm deformation as they attempt to adhere on the printed surfaces. Even though biomineralization without dexamethasone induction was observed in all cultures at later times, different gene expression patterns were observed on the two surfaces. (Osteogenic markers were upregulated on molded substrates, while odontogenic markers were upregulated on the FDM printed surfaces.) Our results clearly indicate that the method of manufacturing is an important consideration in comparing devices, which come in contact with living tissues.
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- 2018
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35. Lithium-Mediated Ammonia Electro-Synthesis: Effect of CsClO4 on Lithium Plating Efficiency and Ammonia Synthesis
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Hoon Cho, Seung Jong Lee, Hyung Chul Yoon, Seok Hwan Jeon, Jang Wook Choi, Jong-Nam Kim, Chung-Yul Yoo, Jong-In Han, and Kwiyong Kim
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Materials science ,Plating efficiency ,Inorganic chemistry ,Nucleation ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Ammonia production ,Metal ,Ammonia ,chemistry.chemical_compound ,Materials Chemistry ,Electrochemistry ,Atmospheric pressure ,Renewable Energy, Sustainability and the Environment ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Nitrogen ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry ,visual_art ,visual_art.visual_art_medium ,Lithium ,0210 nano-technology - Published
- 2018
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36. Assessment of cytotoxicity of (N-isopropyl acrylamide) and Poly(N-isopropyl acrylamide)- coated surfaces.
- Author
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Cooperstein, Marta A. and Canavan, Heather E.
- Abstract
Poly(N-isopropyl acrylamide) (pNIPAM) is one of the most popular stimulus-responsive polymers for research. It is especially of great interest in the field of tissue engineering. While it is known that the NIPAM monomer is toxic, there is little conclusive research on the cytotoxicity of the polymer. In this work, the relative biocompatibility of the NIPAM monomer, pNIPAM, and pNIPAM-coated substrates prepared using different polymerization (free radical and plasma polymerization) and deposition (spin coating and plasma polymerization) techniques was evaluated using appropriate cytotoxicity tests (MTS, Live/Dead, plating efficiency). Four different mammalian cell types (endothelial, epithelial, smooth muscle, and fibroblasts) were used for the cytotoxicity testing. The pNIPAM-coated surfaces were evaluated for their thermoresponse and surface chemistry using X-ray photoelectron spectroscopy and goniometry. We found that while cell viability on pNIPAM surfaces decreases when compared to controls, the viability also seems to be deposition type dependent, with sol–gel based pNIPAM surfaces being the least biocompatible. Long term experiments proved that all pNIPAM-coated surfaces were not cytotoxic to the four cell types evaluated in a direct contact test. Plating efficiency experiments did not show cytotoxicity. Cellular sensitivity to pNIPAM and to the NIPAM monomer varied depending on cell type. Endothelial cells consistently showed decreased viability after 48 hours of exposure to pNIPAM extracts and were more sensitive than the other cell lines to impurities in the polymer. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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37. Response of carrot protoplasts and protoplast-derived aggregates to selection using a fungal culture filtrate of Alternaria radicina.
- Author
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Grzebelus, Ewa, Kruk, Maria, Macko-Podgórni, Alicja, and Grzebelus, Dariusz
- Abstract
Protoplasts isolated from three accessions of cultivated carrot and 5-day-old protoplast-derived aggregates were subjected to selection to identify somaclonal variants with enhanced tolerance to the fungal disease black rot incited by Alternaria radicina. Different concentrations [1, 2, 3.5, 5, 10, 20, 35 and 50 % (v/v)] of a fungal culture filtrate (FCF) from 2-week-old liquid cultures of A. radicina were used. Protoplasts and aggregates were subjected to short-term selection for a period of 10 days. All FCF concentrations added to the cultures on the day of isolation decreased protoplast survival frequency and plating efficiency, while FCF applied 5 days later inhibited cell divisions in 5-50 % concentrations. The responses of protoplasts to the treatment were genotype dependent. Most R0 plants were regenerated in all accessions from cell lines grown with 1 % FCF, while only a few plants were produced from 2 to 3.5 % FCF-treated cultures of 'Dolanka' and the breeding line '9304B', respectively. Nineteen-percent of putative stress-tolerant regenerants were tetraploids, while only 5 % tetraploids were observed in the control. The incidence of unique random amplified polymorphic DNA fragments indicating possible chromosomal rearrangements was low and did not differ among regenerants after selection and those derived from the control. Mobilization of miniature inverted repeat transposable elements was not observed. Some R0 individuals regenerated both from FCF-treated and untreated cultures showed lower susceptibility to A. radicina in a laboratory assay in comparison to control plants grown from seed. Regenerants from FCF-treated cultures showed lower frequency of flowering plants and a higher rate of male sterility. Pollen viability of the putative stress-tolerant regenerants varied over a wide range (6-98 %), independently of in vitro selection conditions. Our data suggest that A. radicina FCF may be feasible for the in vitro selection to generate plants with superior phenotypic performance against A. radicina. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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38. Automatic cell cloning assay for determining the clonogenic capacity of cancer and cancer stem-like cells.
- Author
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Fedr, Radek, Pernicová, Zuzana, Slabáková, Eva, Straková, Nicol, Bouchal, Jan, Grepl, Michal, Kozubík, Alois, and Souček, Karel
- Abstract
The clonogenic assay is a well-established in vitro method for testing the survival and proliferative capability of cells. It can be used to determine the cytotoxic effects of various treatments including chemotherapeutics and ionizing radiation. However, this approach can also characterize cells with different phenotypes and biological properties, such as stem cells or cancer stem cells. In this study, we implemented a faster and more precise method for assessing the cloning efficiency of cancer stem-like cells that were characterized and separated using a high-speed cell sorter. Cell plating onto a microplate using an automatic cell deposition unit was performed in a single-cell or dilution rank mode by the fluorescence-activated cell sorting method. We tested the new automatic cell-cloning assay (ACCA) on selected cancer cell lines and compared it with the manual approach. The obtained results were also compared with the results of the limiting dilution assay for different cell lines. We applied the ACCA to analyze the cloning capacity of different subpopulations of prostate and colon cancer cells based on the expression of the characteristic markers of stem (CD44 and CD133) and cancer stem cells (TROP-2, CD49f, and CD44). Our results revealed that the novel ACCA is a straightforward approach for determining the clonogenic capacity of cancer stem-like cells identified in both cell lines and patient samples. © 2013 International Society for Advancement of Cytometry [ABSTRACT FROM AUTHOR]
- Published
- 2013
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39. Determination of the date palm cell suspension growth curve, optimum plating efficiency, and influence of liquid medium on somatic embryogenesis.
- Author
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Al-Khayri, Jameel M.
- Subjects
- *
DATE palm , *CELL suspensions , *PLANT growth , *SOMATIC embryogenesis , *PLANT micropropagation - Abstract
Understanding the behavior of date palm (Phoenix dactylifera L.) cell suspension growth and differentiation would foster effective utilization for mass micropropagation and various in vitro investigations. The objectives of this study were to define the growth curve, identify the optimum plating density, and examine the efficiency of somatic embryogenesis of date palm suspension culture on solid and liquid media. Cell suspensions were established from shoot tip-induced callus of cv. Barhee inoculated in MS medium containing 10 mg l-1 naphthaleneacetic acid and 1.5 mg l-1 2-isopentenyladenine. Various growth phases including lag, exponential, linear, progressive deceleration, and stationary, along with their specific onsets and durations, were identified based on packed cell volume method. The growth pattern characterizing the exponential phase in date palm cell suspensions commenced 4 weeks after culture initiation which makes this period the most suitable for subculturing, assessment of the effects tissue culture factors, and in vitro selection. The effect of cell plating density on cell growth after transferring to solidified medium was also determined. The highest plating efficiency, 14.6%, was obtained at cell density of 10,000 cells ml-1. To stimulate somatic embryogenesis, cell suspension masses were transferred to agar or liquid media devoid of phytohormones. Plant regeneration was marked by the development of globular somatic embryos which progressively matured and germinated. Culturing suspension mass in liquid medium expedited regeneration and resulted in 3.5-fold more somatic embryos than agar medium. [ABSTRACT FROM AUTHOR]
- Published
- 2012
40. An improved protocol for plant regeneration from leaf- and hypocotyl-derived protoplasts of carrot.
- Author
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Grzebelus, Ewa, Szklarczyk, Marek, and Baranski, Rafal
- Abstract
An easy and effective regeneration system from leaf- and hypocotyl-derived protoplasts was established for carrot. The protoplast isolation efficiency after preplasmolytic treatment and digestion of source material in enzyme mixture consisted of 1% cellulase Onozuka R-10 and 0.1% pectolyase Y-23 reached on average 3 × 10 and 10 protoplasts per g of leaf and hypocotyl tissue, respectively. A modified thin alginate layer technique was applied for the protoplast culture. Direct somatic embryogenesis on a simplified Kao and Michayluk medium in the presence of 2,4-D and zeatin occurred during cultivation of both leaf- and hypocotyl-derived protoplasts for all accessions used. Morphologically normal plants were produced at very high efficiency within two months after initiation of the protoplast culture. Ninety three percent of in vitro derived plants were diploids. Pollen viability and seed set after self-pollination were similar to those of plants obtained from seeds. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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41. An efficient protocol for stimulating cell development in protoplast culture of S caevola.
- Author
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Yu Hua Wang
- Abstract
Scaevola, characterised by unique fan-shaped flowers, is an Australian endemic ornamental having a great commercial potential. The breeding of Scaevola however is limited due to poor seed germination, therefore it is critical to understand the embryogenesis in Scaevola so as to facilitate its breeding improvement programs. Direct differentiation of embryo structures was first reported here in mesophyll protoplast cultures of Scaevola aemula. The isolated protoplasts initiated cell division when cultured in KM or MS medium. Higher plating efficiencies were observed in the medium containing a combination of NAA and BAP in contrast to 2,4-D and BAP. The formation of globular embryo structures was successfully achieved. This protoplast culture system can be utilized as an experimental platform for the study of embryogenic differentiation of cells. It may open new vistas to investigate the seed development at molecular and cellular levels in Scaevola and related Australian native plants that are well known for their low seed viability and germination. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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42. Plating Efficiency
- Author
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Rédei, George P.
- Published
- 2008
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43. Performance degradation due to anodic failure mechanisms in lithium-ion batteries
- Author
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Pranav Shrotriya, Abhishek Sarkar, and Ikenna C. Nlebedim
- Subjects
Plating efficiency ,Materials science ,Renewable Energy, Sustainability and the Environment ,Composite number ,Energy Engineering and Power Technology ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Stripping (fiber) ,0104 chemical sciences ,Anode ,Cracking ,Electrode ,Graphite ,Electrical and Electronic Engineering ,Physical and Theoretical Chemistry ,Fade ,Composite material ,0210 nano-technology - Abstract
We report a mechano-chemical model for anodic degradation during fast-charging of nickel-manganese-cobalt (NMC)/graphite (C) cell due to SEI growth, lithium plating/stripping, dead lithium storage, and film fracture of composite SEI and plated lithium film. Degradation of the battery is analyzed for a range of charging rates from 1 to 6 C-rates, and the influence of plating mechanisms – lithium plating and dead lithium deposition and recovery during stripping – on the film resistance of the anode are accounted for in the model. Dynamic evolution of the interfacial properties is modeled using rule-of-mixture approach. Model predictions of plating associated stress fields are used to compute critical energy release rate for film cracking. The results indicate an increased tendency of fracture for thinner SEI film with lithium plating at higher charging rates. The process of reforming the cracked film absorbs a significant portion of the electrode current thereby reducing the cell capacity and plating efficiency. The mechano-chemical model provides an extensive analytical framework for understanding the synergistic coupling of anodic degradation mechanisms, prognosticating conditions of SEI failure, and evaluating the capacity fade and efficiency of lithium-ion battery.
- Published
- 2021
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44. Influence of substrate, pH and magnetic field onto composition and current efficiency of electrodeposited Ni–Fe alloys
- Author
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Fricoteaux, Patrick and Rousse, Céline
- Subjects
- *
MAGNETIC fields , *HYDROGEN-ion concentration , *METALLIC composites , *COATING processes - Abstract
Abstract: The electrodeposition of nickel–iron alloys has been studied with different conditions of pH, substrate and magnetic field induction. All experimental conditions influence the current efficiency value and the alloy composition. For low current densities, alloys obtained at pH 3 present a smaller nickel percentage onto tin substrate compared to copper substrate. In the same time, the plating efficiency is improved onto tin electrode. On the other hand, if electrolyze is realized with magnetic field superimposition, the nickel percentage and the current efficiency are together reduced. For constant conditions of pH, substrate and magnetic induction, we observe that more the efficiency current is low, more the alloy composition is rich in nickel. All these effects relating to the plating efficiency and to the Ni–Fe alloy composition are elucidated using the hydrogen evolution reaction (HER). [Copyright &y& Elsevier]
- Published
- 2008
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45. Effects of STC1 overexpression on tumorigenicity and metabolism of hepatocellular carcinoma
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Cherry C.T. Leung and Chris K C Wong
- Subjects
AMPK ,0301 basic medicine ,Plating efficiency ,Chemistry ,Kinase ,Inflammation ,medicine.disease_cause ,rpS6 ,boyden chamber ,03 medical and health sciences ,Paracrine signalling ,030104 developmental biology ,0302 clinical medicine ,Oncology ,tumor mass ,030220 oncology & carcinogenesis ,Ribosomal protein s6 ,medicine ,Cancer research ,Phosphorylation ,Glycolysis ,xenograft ,medicine.symptom ,Carcinogenesis ,Research Paper - Abstract
Stanniocalcin-1 (STC1) is a paracrine factor associated with inflammation and carcinogenesis. Using clinicopathological data, we previously reported that a greater expression of STC1 in hepatocellular carcinoma (HCC) was significantly correlated with smaller tumor size. The underlying mechanism on the correlation is not known. In this study, using a metastatic HCC cell-line (MHCC-97L, P) and lentiviral vector mediated-STC1 overexpression, the inoculation of STC1-overexpressing MHCC-97L (S1) cells in a nude mice xenograft model demonstrated reductions in tumor mass and volume. As compared with P cells, S1 cells exhibited epithelial phenotype with significantly lower plating efficiency and reduced migratory and proliferative potential. Using coulter counter for cell-sizing, S1 cells (17.6 μm) were significantly smaller than P cells (19.6 μm). Western blot analysis revealed that S1 cells exhibited reduced expression level of phosphorylated ribosomal protein S6 (p-rpS6). Moreover, an inhibition of the upstream kinase p70S6K was evident with the dephosphorylation of Thr389 in the linker domain of the kinase. The inhibition of p70S6K/p-rpS6 pathway was accompanied with reduced cellular ATP level and increase of p-AMPK in S1 cells. Significantly lower rates of glycolysis and extracellular O2 consumption in S1 cells exhibited a lower cellular energy status. Since a faster rate of ATP production is essential to support cancer growth and metastasis, the present study identified the effect of STC1-overexpression on reducing energy metabolism, leading to an activation of AMPK pathway but an inhibition of p70S6K/p-rpS6 signaling to reduce tumor growth.
- Published
- 2017
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46. [Cr3O(O2CCH2CH3)6(H2O)3]NO3·H2O (Cr3) Toxicity Potential in Bacterial and Mammalian Cells
- Author
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John B. Vincent, Lu Jiang, and Melissa M. Bailey
- Subjects
0301 basic medicine ,Plating efficiency ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,chemistry.chemical_element ,010501 environmental sciences ,Biology ,medicine.disease_cause ,01 natural sciences ,Biochemistry ,Inorganic Chemistry ,Toxicology ,03 medical and health sciences ,Chromium ,Clastogen ,medicine ,Cytotoxicity ,Escherichia coli ,0105 earth and related environmental sciences ,Biochemistry (medical) ,Lipid metabolism ,General Medicine ,Metabolism ,030104 developmental biology ,chemistry ,Toxicity - Abstract
Chromium(III) has generally been considered to be essential for proper carbohydrate and lipid metabolism, and, despite recent evidence to the contrary, chromium(III)-containing compounds remain one of the most popular commercial dietary supplements. Cr3, or [Cr3O(O2CCH2CH3)6(H2O)3]NO3·H2O, is a trivalent chromium compound that is a promising chromium nutritional supplement. Studies with Cr3 have indicated that it is non-toxic in developmental and short- and long-term exposure studies in rodents, but the safety of this compound to chromosomes and cells has not been explored. The current study evaluates the mutagenicity, cytotoxicity, and clastogenicity of Cr3 in bacterial and mammalian cells and compares these results with similar studies using the bestselling Cr(III) nutritional supplement, chromium picolinate (CrPic). The mutagenicity of CrPic and Cr3 was tested in Escherichia coli FX-11 and Salmonella typhimurium (TA 98 and TA 100). Cytotoxicity was measured as a decrease in plating efficiency relative to controls after treatment with Cr3 and CrPic for 24 h in CHO K1 cells. Clastogenicity was measured by counting the number of metaphases damaged and of the total number chromosomal aberrations in CHO K1 cells. Mutagenesis assays in E. coli and S. typhimurium were negative. All treatments of Cr3 produced ≥ 84% plating efficiency except 80 μg/cm2, which reduced the plating efficiency to 62%. Cr3 at any treatment level did not produce a significant increase in the number of cells with abnormal metaphases, while treatments using ≥ 40 μg/cm2 of CrPic elevated the number significantly. These data suggest that Cr3 is significantly less mutagenic in bacteria cells and less clastogenic in CHO K1 cells, while CrPic is clastogenic in CHO K1 cells.
- Published
- 2017
- Full Text
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47. Characterizing responses to gamma radiation by a highly clonogenic fish brain endothelial cell line
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Bibi S.H. Sokeechand, Carmel Mothersill, Colin Seymour, and Nguyen T.K. Vo
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Plating efficiency ,Cell ,Priming (immunology) ,010501 environmental sciences ,Biology ,01 natural sciences ,Biochemistry ,Genomic Instability ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Bystander effect ,medicine ,Animals ,Clonogenic assay ,0105 earth and related environmental sciences ,General Environmental Science ,Brain ,Endothelial Cells ,Dose-Response Relationship, Radiation ,Bystander Effect ,Anguilla ,Endothelial stem cell ,HaCaT ,medicine.anatomical_structure ,Gamma Rays ,Cell culture ,030220 oncology & carcinogenesis ,Mutation ,Immunology ,Cancer research - Abstract
Purpose The clonogenic property and radiobiological responses of a fish brain endothelial cell line, eelB, derived from the American eel were studied. Methods Clonogenic assays were performed to determine the plating efficiency of the eelB cells and to evaluate the clonogenic survival fractions after direct irradiation to low-dose low-LET gamma radiation or receiving irradiated cell conditioned medium in the bystander effect experiments. Result eelB had the second highest plating efficiency ever reported to date for fish cell lines. Large eelB macroscopic colonies could be formed in a short period of time and were easy to identify and count. Unlike with other fish clonogenic cell lines, which had a relatively slow proliferation profile, clonogenic assays with the eelB cells could be completed as early as 12 days in culture. After direct irradiation with gamma rays at low doses ranging from 0.1 Gy to 5 Gy, the dose-clonogenic survival curve of the eelB cell line showed a linear trend and did not develop a shoulder region. A classical radio-adaptive response was not induced with the clonogenic survival endpoint when the priming dose (0.1 or 0.5 Gy) was delivered 6 h before the challenge dose (3 or 5 Gy). However, a radio-adaptive response was observed in progeny cells that survived 5 Gy and developed lethal mutations. eelB appeared to lack the ability to produce damaging radiation-induced bystander signals on both eelB and HaCaT recipient cells. Conclusion eelB cell line could be a very useful cell model in the study of radiation impacts on the aquatic health.
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- 2017
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48. In cancer cell lines inhibition of SCF/c-Kit pathway leads to radiosensitization only when SCF is strongly over-expressed
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Miriam F. Saulich, Jörg Hänze, Rita Engenhart-Cabillic, Werner Seeger, E. Dikomey, Florentine S.B. Subtil, Katja Hattar, Fabian Eberle, and Florian H. Leinberger
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0301 basic medicine ,Plating efficiency ,R895-920 ,Clonogenic survival ,Biology ,medicine.disease_cause ,NSCLC ,Article ,03 medical and health sciences ,3D cell culture ,Prostate cancer ,Medical physics. Medical radiology. Nuclear medicine ,0302 clinical medicine ,DU145 ,Western blot ,Radioresistance ,medicine ,Radiology, Nuclear Medicine and imaging ,RC254-282 ,Gene knockdown ,medicine.diagnostic_test ,X-irradiation ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,030104 developmental biology ,Oncology ,SCF/c-Kit pathway ,030220 oncology & carcinogenesis ,Immunology ,Cancer research ,Carcinogenesis - Abstract
Background and purpose The SCF/c-Kit pathway is often overexpressed in human tumors leading to an enhanced tumorigenesis, proliferation and migration. It was now tested for NSCLC and prostate cancer cells growing in 2D and 3D whether the inhibition of this pathway can be used to achieve a significant radiosensitization and whether a respective biomarker may be identified. Material and methods Experiments were performed with different cancer cell lines (NSCLC: H23, H520, H226, H1975 and PrCa: DU145) growing either under 2D or 3D conditions. Expression of SCF and c-Kit was determined by RT-PCR and Western blot, SCF was knocked down by siRNA, c-Kit was inhibited by ISCK03 inhibitor and cell survival was determined by colony formation assay. Results There is a profound variation in the expression of both c-Kit and SCF with no association between each other. Neither levels did correlate with the respective cellular radiosensitivity determined for 2D or 3D with only a trend seen for SCF. Knock-down of SCF was generally found to result in no or only minor reduction of plating efficiency or cellular radioresistance. A significant reduction was only obtained for H520 cells characterized by an extreme over-expression of SCF. The inhibition of c-Kit by a specific inhibitor was also found to result only in minor radiosensitization. Conclusion Generally, the SCF/c-Kit pathway does not have a dominant effect on both, cell survival and radioresponse and, as a consequence, knockdown of this pathway does not result in a strong effect on radioresistance, except when SCF is strongly over-expressed.
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- 2017
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49. Conditioned culture for protoplasts isolated from chrysanthemum: An efficient approach
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Zhou, Jing, Wang, Bochu, and Zhu, Liqing
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CHRYSANTHEMUMS , *PROTOPLASTS , *CELLS , *CELL division - Abstract
Abstract: An efficient approach was described for the culture of protoplasts isolated from chrysanthemum, and factors affecting the plating efficiency, defined as the number of protoplasts developing microcolonies divided by the number of cultured protoplasts, were investigated here. A yield of 4.86±0.22×105 mesophyll protoplasts per gram fresh weight were achieved by an enzymolysis procedure. The viability of fresh isolated protoplasts was 64.5±8.2% as confirmed by Evans blue staining. Sustained cell division and microcolony formation from the protoplasts were supported by modified Murashige and Skoog medium, complemented with 1:4 diluted conditioned medium harvested from three different callus suspension cultures. Results showed that the plating efficiency was obviously influenced by various concentrations of agarose and antibiotic, and significantly increased by conditioned medium harvested from chrysanthemum suspensions, while the other two species had a positive effect generally. Results also indicated that the growth-stimulative effect was reduced when the conditioned medium was stored for 6–14 days prior to use, suggesting the unstable characteristic of conditioning factors. [Copyright &y& Elsevier]
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- 2005
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50. A simplified method for the cultivation of extreme anaerobic Archaea based on the use of sodium sulfite as reducing agent.
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Rothe, Oliver and Thomm, M.
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ARCHAEBACTERIA ,CULTURE media (Biology) ,SODIUM sulfites ,OXYGEN ,SERUM ,HYDROGEN sulfide ,PRECIPITATION (Chemistry) - Abstract
The extreme sensitivity of many Archaea to oxygen is a major obstacle for their cultivation in the laboratory and the development of archaeal genetic exchange systems. The technique of Balch and Wolfe (1976) is suitable for the cultivation of anaerobic Archaea but involves time-consuming procedures such as the use of air locks and glove boxes. We describe here a procedure for the cultivation of anaerobic Archaea that is more convenient and faster and allows the preparation of liquid media without the use of an anaerobic chamber. When the reducing agent sodium sulfide (Na
2 S) was replaced by sodium sulfite (Na2 SO3 ), anaerobic media could be prepared without protection from oxygen outside an anaerobic chamber. Exchange of the headspace of serum bottles by appropriate gases was sufficient to maintain anaerobic conditions in the culture media. Organisms that were unable to utilize sulfite as a source for cellular sulfur were supplemented with hydrogen sulfide. H2 S was simply added to the headspace of serum bottles by a syringe. The use of H2 S as a source for sulfur minimized the precipitation of cations by sulfide. Representatives of 12 genera of anaerobic Archaea studied here were able to grow in media prepared by this procedure. For the extremely oxygen-sensitive organism Methanococcus thermolithotrophicus, we show that plates could be prepared outside an anaerobic chamber when sulfite was used as reducing agent. The application of this method may faciliate the cultivation and handling of extreme anaerobic Archaea considerably. [ABSTRACT FROM AUTHOR]- Published
- 2000
- Full Text
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