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Bruguiera gymnorhiza (L.) Savigny is one of the most important and widespread mangrove species in the Indo-West Pacific region. Here, the population structure and genetic diversity of B. gymnorhiza along the coastlines of Thailand were examined. A total of 73 B. gymnorhiza accessions in 15 provinces were sequenced using RAD-seq to generate their SNPs. Based on the high-quality SNPs, the topology of the maximum likelihood phylogenetic tree clearly presented two genetically distinct groups corresponding to two geographic regions, the Gulf of Thailand and the Andaman Sea coasts. The results for the population structure provided by STRUCTURE and PCA also showed two main genetic clusters and their genetic admixture. A moderate genetic diversity was observed among the accessions, with average observed and expected heterozygosity values of 0.397 and 0.317, respectively. A high genetic differentiation (FST = 0.16, p < 0.001) between the two subpopulations was significantly found. An analysis of molecular variance revealed 83.95% of the genetic variation within populations and 16.05% of the genetic variation among populations. A high genetic variation within the populations and admixture may facilitate adaptation to local environments and climate changes. These results provide important information on the population genetic structure and genetic diversity of B. gymnorhiza in Thailand for further mangrove management.

Background and Aim: MicroRNAs (miRNAs) are responsible for gene expression control at the post-transcription level in many species. Several miRNAs are required in the regulation of immune responses, such as B-cell differentiation, T-cell receptor signaling pathway, CD4+ T cell selection, and so on. Studies on miRNAs have been extensively conducted in humans and mice; however, reports relevant to miRNAs, especially miR-155 and miR-181, in pigs are limited. Consequently, the present study aimed to investigate the structures, target genes, and expressions of miR-155 and miR-181 in various porcine cells and tissues. Materials and Methods: Five healthy male pigs from a porcine reproductive and respiratory syndrome virus-negative farm were studied. Before slaughter, blood samples were collected for peripheral blood mononuclear cell isolation. After slaughter, samples of spleen, lymph nodes, and forelimb muscles were collected. Both miR-155 and miR-181 were investigated for their structures with RNAfold web server, for their target genes from three online web servers, and for their expressions using polymerase chain reaction (PCR). Results: The structures of miR-155 and miR-181 contained hairpins with free energies of –35.27 and –35.29 kcal/mole, respectively. Target gene prediction revealed that miR-155 had perfect complementarity with Socs1 and Mapk3k14, while miR-181 had perfect complementarity with Ddx3x, Nfat5, Foxp1, and Mpp5. PCR showed that both miRNAs were detectable from all investigated cells and tissues. Moreover, the highest expression of both miRNAs was found from the lymph node of the pigs. Conclusion: Both miR-155 and miR-181 might be involved with the regulation of porcine immune functions as both miRNAs were detected in several cells and tissues of the pigs. In addition, they had very high complementarities with the seed regions of several immune-related genes.

Bats (Chiroptera) constitute the second largest order of mammals and have several distinctive features, such as true self-powered flight and strong immunity. The Pendlebury’s roundleaf bat, Hipposideros pendleburyi, is endemic to Thailand and listed as a vulnerable species. We employed the 10× Genomics linked-read technology to obtain a genome assembly of H. pendleburyi. The assembly size was 2.17 Gb with a scaffold N50 length of 15,398,518 bases. Our phylogenetic analysis placed H. pendleburyi within the rhinolophoid clade of the suborder Yinpterochiroptera. A synteny analysis showed that H. pendleburyi shared conserved chromosome segments (up to 105 Mb) with Rhinolophus ferrumequinum and Phyllostomus discolor albeit having different chromosome numbers and belonging different families. We found positive selection signals in genes involved in inflammation, spermatogenesis and Wnt signalling. The analyses of transposable elements suggested the contraction of short interspersed nuclear elements (SINEs) and the accumulation of young mariner DNA transposons in the analysed hipposiderids. Distinct mariners were likely horizontally transferred to hipposiderid genomes over the evolution of this family. The lineage-specific profiles of SINEs and mariners might involve in the evolution of hipposiderids and be associated with the phylogenetic separations of these bats from other bat families.

Tilapia tilapinevirus, or tilapia lake virus (TiLV), is a highly contagious virus found in tilapia and its hybrid species that has been reported worldwide, including in Asia, the Americas, and Africa. In this study, we experimentally challenged Mozambique tilapia (Oreochromis mossambicus) with a virulent TiLV strain, VETKU-TV01, at both low (1 × 103 TCID50/mL) and high (1 × 105 TCID50/mL) concentration. After the challenge, the Mozambique tilapia showed pale skin with some hemorrhage and erosion, lethargy, abdominal swelling, congestion around the eye, and exophthalmos, there was a cumulative mortality rate at 48.89% and 77.78% in the groups that received the low and high concentration, respectively. Quantitative PCR and in situ hybridization confirmed the presence of TiLV in the internal organs of moribund fish. Notably, severe histopathological changes, including glycogen depletion, syncytial hepatic cells containing multiple nuclei and intracytoplasmic inclusion bodies, and infiltration of melanomacrophage into the spleen, were frequently found in the Mozambique tilapia challenged with high TiLV concentration. Comparatively, the infectivity and pathology of the TiLV infection in Mozambique tilapia and red hybrid tilapia (Oreochromis spp.) were found to be similar. Our results confirmed the susceptibility of Mozambique tilapia, which has recently been determined to be a vulnerable species, to TiLV infection, expanding knowledge that the virus can cause disease in this fish species.

Tilapia lake virus disease (TiLVD) caused by tilapia lake virus is a highly contagious disease affecting tilapia and its hybrid species. Thus far, the virus has been identified in >10 countries across 3 continents. For this reason, reliable and rapid diagnostic assays are urgently required. Here, we describe the development and validation of a TaqMan probe-based reverse transcription quantitative polymerase chain reaction (RT-qPCR) assay using TiLV-93F/TiLV-93R primers and a TiLV93Probe targeting segment 3 of TiLV. The standard curve method was used to determine a PCR amplification efficiency of 92.9% over a wide linear range of 2.7 × 104 to 2.7 × 1010 TiLV copies. The intra-assay and inter-assay coefficients of variation are in the ranges of 0.54–2.18% and 0.59–3.88%, respectively. The TaqMan assay detected TiLV at 2.45 × 105 to 2.45 × 108 copy numbers in liver samples from 17 Nile and red hybrid tilapia samples from 2 countries and showing clinical signs of TiLVD. No fluorescence and thus no TiLV detection was found in liver samples from 11 healthy Nile and red hybrid tilapia. The specificity of the assay was further demonstrated by its inability to detect specimens known to have been infected with common fish pathogens, such as, Iridovirus, Streptococcus agalactiae, Francisella spp., Flavobacterium spp., and Aeromonas hydrophila. This newly developed TaqMan RT-qPCR assay can be used as an essential tool for TiLV diagnostics in disease surveillance and control programs, as well as in TiLV basic research projects.

Tilapia lake virus (TiLV) causes an emerging viral disease associated with high mortality and economic damage in tilapia farming around the world. The use of probiotics in aquaculture has been suggested as an alternative to antibiotics and drugs to reduce the negative impact of bacterial and viral infections. In this study, we investigate the effect of probiotic Bacillus spp. supplementation on mortality, viral load, and expression of immune-related genes in red hybrid tilapia (Oreochromis spp.) upon TiLV infection. Fish were divided into three groups, and fed with: control diet, 0.5% probiotics-supplemented diet, and 1% probiotics-supplemented diet. After 21 days of experimental feeding, the three groups were infected with TiLV and monitored for mortality and growth performances, while organs were sampled at different time points to measure viral load and the transcription modulation of immune response markers. No significant difference was found among the groups in terms of weight gain (WG), average daily gain (ADG), feed efficiency (FE), or feed conversion ratio (FCR). A lower cumulative mortality was retrieved from fish fed 0.5% and 1% probiotics (25% and 24%, respectively), compared to the control group (32%). Moreover, fish fed with 1% probiotic diet had a significantly lower viral load, than those fed with 0.5% probiotic and control diet at 5, 6, 9, and 12 days post infection-challenge (dpc). The expression patterns of immune-related genes, including il-8 (also known as CXCL8), ifn-&gamma, irf-3, mx, rsad-2 (also known as VIPERIN) showed significant upregulation upon probiotic treatment during the peak of TiLV pathogenesis (between 9 and 12 dpc) and during most of the study period in fish fed with 1% probiotics-supplemented diet. Taken together, these findings indicate that dietary supplementation using Bacillus spp. probiotics may have beneficial effects to strengthen tilapia immunity and resistance against TiLV infections. Therefore, probiotic treatments may be preventively administered to reduce losses caused by this emerging viral infection in tilapia aquaculture.