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1. Consistent patterns of common species across tropical tree communities

Author

Cooper, DLM, Lewis, SL, Sullivan, MJP, Prado, PI, ter Steege, H, Barbier, N, Slik, F, Sonké, B, Ewango, CEN, Adu-Bredu, S, Affum-Baffoe, K, de Aguiar, DPP, Reategui, MAA, Aiba, SI, Albuquerque, BW, Matos, FDD, Alonso, A, Amani, CA, do Amaral, DD, do Amaral, IL, Andrade, A, Miranda, IPD, Angoboy, IB, Araujo-Murakami, A, Arboleda, NC, Arroyo, L, Ashton, P, Aymard, CGA, Baider, C, Baker, TR, Balinga, MPB, Balslev, H, Banin, LF, Bánki, OS, Baraloto, C, Barbosa, EM, Barbosa, FR, Barlow, J, Bastin, JF, Beeckman, H, Begne, S, Bengone, NN, Berenguer, E, Berry, N, Bitariho, R, Boeckx, P, Bogaert, J, Bonyoma, B, Boundja, P, Bourland, N, Bosela, FB, Brambach, F, Brienen, R, Burslem, DFRP, Camargo, JL, Campelo, W, Cano, A, Cárdenas, S, López, DC, Carpanedo, RD, Márquez, YAC, Carvalho, FA, Casas, LF, Castellanos, H, Castilho, CV, Cerón, C, Chapman, CA, Chave, J, Chhang, P, Chutipong, W, Chuyong, GB, Cintra, BBL, Clark, CJ, de Souza, FC, Comiskey, JA, Coomes, DA, Valverde, FC, Correa, DF, Costa, FRC, Costa, JBP, Couteron, P, Culmsee, H, Cuni-Sanchez, A, Dallmeier, F, Damasco, G, Dauby, G, Dávila, N, Doza, HPD, De Alban, JDT, de Assis, RL, De Canniere, C, De Haulleville, T, Carim, MDV, Demarchi, LO, Dexter, KG, Di Fiore, A, Din, HHM, Disney, MI, Djiofack, BY, Djuikouo, MNK, Van Do, T, Doucet, JL, Draper, FC, Droissart, V, Duivenvoorden, JF, Engel, J, Estienne, V, Farfan-Rios, W, Fauset, S, Feeley, KJ, Feitosa, YO, Feldpausch, TR, Ferreira, C, Ferreira, J, Ferreira, LV, Fletcher, CD, Flores, BM, Fofanah, A, Foli, EG, Fonty, E, Fredriksson, GM, Fuentes, A, Galbraith, D, Gonzales, GPG, Garcia-Cabrera, K, García-Villacorta, R, Gomes, VHF, Gómez, RZ, Gonzales, T, Gribel, R, Guedes, MC, Guevara, JE, Hakeem, KR, Hall, JS, Hamer, KC, Harrison, RD, Harris, DJ, Hart, TB, Hector, A, Henkel, TW, Herbohn, J, Hockemba, MBN, Hoffman, B, Holmgren, M, Coronado, ENH, Huamantupa-Chuquimaco, I, Hubau, W, Imai, N, Irume, MV, Jansen, PA, Jeffery, KJ, Jimenez, EM, Jucker, T, Junqueira, AB, Kalamandeen, M, Kamdem, NG, Kartawinata, K, Yakusu, EK, Katembo, JM, Kearsley, E, Kenfack, D, Kessler, M, Khaing, TT, Killeen, TJ, Kitayama, K, Klitgaard, B, Labriere, N, Laumonier, Y, Laurance, SGW, Laurance, WF, Laurent, F, Le, TC, Leal, ME, Novo, EMLD, Levesley, A, Libalah, MB, Licona, JC, Lima, DD, Lindsell, JA, Lopes, A, Lopes, MA, Lovett, JC, Lowe, R, Lozada, JR, Lu, XH, Luambua, NK, Luize, BG, Maas, P, Magalhaes, JLL, Magnusson, WE, Mahayani, NPD, Makana, JR, Malhi, Y, Rincón, LM, Mansor, A, Manzatto, AG, Marimon, BS, Marimon, BH Jr, Marshall, AR, Martins, MP, Mbayu, FM, de Medeiros, MB, Mesones, I, Metali, F, Mihindou, V, Millet, J, Milliken, W, Mogollon, HF, Molino, JF, Said, MNM, Mendoza, AM, Montero, JC, Moore, S, Mostacedo, B, Pinto, LFM, Mukul, SA, Munishi, PKT, Nagamasu, H, Nascimento, HEM, Nascimento, MT, Neill, D, Nilus, R, Noronha, JC, Nsenga, L, Vargas, PN, Ojo, L, Oliveira, AA, de Oliveira, EA, Ondo, FE, Cuenca, WP, Pansini, S, Pansonato, MP, Paredes, MR, Paudel, E, Pauletto, D, Pearson, RG, Pena, JLM, Pennington, RT, Peres, CA, Permana, A, Petronelli, P, Mora, MCP, Phillips, JF, Phillips, OL, Pickavance, G, Piedade, MTF, Pitman, NCA, Ploton, P, Popelier, A, Poulsen, JR, Prieto, A, Primack, RB, Priyadi, H, Qie, L, Quaresma, AC, de Queiroz, HL, Ramirez-Angulo, H, Ramos, JF, Reis, NFC, Reitsma, J, Revilla, JDC, Riutta, T, Rivas-Torres, G, Robiansyah, I, Rocha, M, Rodrigues, DD, Rodriguez-Ronderos, ME, Rovero, F, Rozak, AH, Rudas, A, Rutishauser, E, Sabatier, D, Sagang, L, Sampaio, AF, Samsoedin, I, Satdichanh, M, Schietti, J, Schöngart, J, Scudeller, VV, Seuaturien, N, Sheil, D, Sierra, R, Silman, MR, Silva, TSF, Guimaraes, JRD, Simo-Droissart, M, Simon, MF, Sist, P, Sousa, TR, Farias, ED, Coelho, LD, Spracklen, DV, Stas, SM, Steinmetz, R, Stevenson, PR, Stropp, J, Sukri, RS, Sunderland, TCH, Suzuki, E, Swaine, MD, Tang, JW, Taplin, J, Taylor, DM, Tello, JS, Terborgh, J, Texier, N, Theilade, I, Thomas, DW, Thomas, R, Thomas, SC, Tirado, M, Toirambe, B, de Toledo, JJ, Tomlinson, KW, Torres-Lezama, A, Tran, HD, Mukendi, JT, Tumaneng, RD, Umaña, MN, Umunay, PM, Giraldo, LEU, Sandoval, EHV, Gamarra, LV, Van Andel, TR, van de Bult, M, van de Pol, J, van der Heijden, G, Vasquez, R, Vela, CIA, Venticinque, EM, Verbeeck, H, Veridiano, RKA, Vicentini, A, Vieira, ICG, Torre, EV, Villarroel, D, Zegarra, BEV, Vleminckx, J, von Hildebrand, P, Vos, VA, Vriesendorp, C, Webb, EL, White, LJT, Wich, S, Wittmann, F, Zagt, R, Zang, RG, Zartman, CE, Zemagho, L, Zent, EL, Zent, S, Cooper, DLM, Lewis, SL, Sullivan, MJP, Prado, PI, ter Steege, H, Barbier, N, Slik, F, Sonké, B, Ewango, CEN, Adu-Bredu, S, Affum-Baffoe, K, de Aguiar, DPP, Reategui, MAA, Aiba, SI, Albuquerque, BW, Matos, FDD, Alonso, A, Amani, CA, do Amaral, DD, do Amaral, IL, Andrade, A, Miranda, IPD, Angoboy, IB, Araujo-Murakami, A, Arboleda, NC, Arroyo, L, Ashton, P, Aymard, CGA, Baider, C, Baker, TR, Balinga, MPB, Balslev, H, Banin, LF, Bánki, OS, Baraloto, C, Barbosa, EM, Barbosa, FR, Barlow, J, Bastin, JF, Beeckman, H, Begne, S, Bengone, NN, Berenguer, E, Berry, N, Bitariho, R, Boeckx, P, Bogaert, J, Bonyoma, B, Boundja, P, Bourland, N, Bosela, FB, Brambach, F, Brienen, R, Burslem, DFRP, Camargo, JL, Campelo, W, Cano, A, Cárdenas, S, López, DC, Carpanedo, RD, Márquez, YAC, Carvalho, FA, Casas, LF, Castellanos, H, Castilho, CV, Cerón, C, Chapman, CA, Chave, J, Chhang, P, Chutipong, W, Chuyong, GB, Cintra, BBL, Clark, CJ, de Souza, FC, Comiskey, JA, Coomes, DA, Valverde, FC, Correa, DF, Costa, FRC, Costa, JBP, Couteron, P, Culmsee, H, Cuni-Sanchez, A, Dallmeier, F, Damasco, G, Dauby, G, Dávila, N, Doza, HPD, De Alban, JDT, de Assis, RL, De Canniere, C, De Haulleville, T, Carim, MDV, Demarchi, LO, Dexter, KG, Di Fiore, A, Din, HHM, Disney, MI, Djiofack, BY, Djuikouo, MNK, Van Do, T, Doucet, JL, Draper, FC, Droissart, V, Duivenvoorden, JF, Engel, J, Estienne, V, Farfan-Rios, W, Fauset, S, Feeley, KJ, Feitosa, YO, Feldpausch, TR, Ferreira, C, Ferreira, J, Ferreira, LV, Fletcher, CD, Flores, BM, Fofanah, A, Foli, EG, Fonty, E, Fredriksson, GM, Fuentes, A, Galbraith, D, Gonzales, GPG, Garcia-Cabrera, K, García-Villacorta, R, Gomes, VHF, Gómez, RZ, Gonzales, T, Gribel, R, Guedes, MC, Guevara, JE, Hakeem, KR, Hall, JS, Hamer, KC, Harrison, RD, Harris, DJ, Hart, TB, Hector, A, Henkel, TW, Herbohn, J, Hockemba, MBN, Hoffman, B, Holmgren, M, Coronado, ENH, Huamantupa-Chuquimaco, I, Hubau, W, Imai, N, Irume, MV, Jansen, PA, Jeffery, KJ, Jimenez, EM, Jucker, T, Junqueira, AB, Kalamandeen, M, Kamdem, NG, Kartawinata, K, Yakusu, EK, Katembo, JM, Kearsley, E, Kenfack, D, Kessler, M, Khaing, TT, Killeen, TJ, Kitayama, K, Klitgaard, B, Labriere, N, Laumonier, Y, Laurance, SGW, Laurance, WF, Laurent, F, Le, TC, Leal, ME, Novo, EMLD, Levesley, A, Libalah, MB, Licona, JC, Lima, DD, Lindsell, JA, Lopes, A, Lopes, MA, Lovett, JC, Lowe, R, Lozada, JR, Lu, XH, Luambua, NK, Luize, BG, Maas, P, Magalhaes, JLL, Magnusson, WE, Mahayani, NPD, Makana, JR, Malhi, Y, Rincón, LM, Mansor, A, Manzatto, AG, Marimon, BS, Marimon, BH Jr, Marshall, AR, Martins, MP, Mbayu, FM, de Medeiros, MB, Mesones, I, Metali, F, Mihindou, V, Millet, J, Milliken, W, Mogollon, HF, Molino, JF, Said, MNM, Mendoza, AM, Montero, JC, Moore, S, Mostacedo, B, Pinto, LFM, Mukul, SA, Munishi, PKT, Nagamasu, H, Nascimento, HEM, Nascimento, MT, Neill, D, Nilus, R, Noronha, JC, Nsenga, L, Vargas, PN, Ojo, L, Oliveira, AA, de Oliveira, EA, Ondo, FE, Cuenca, WP, Pansini, S, Pansonato, MP, Paredes, MR, Paudel, E, Pauletto, D, Pearson, RG, Pena, JLM, Pennington, RT, Peres, CA, Permana, A, Petronelli, P, Mora, MCP, Phillips, JF, Phillips, OL, Pickavance, G, Piedade, MTF, Pitman, NCA, Ploton, P, Popelier, A, Poulsen, JR, Prieto, A, Primack, RB, Priyadi, H, Qie, L, Quaresma, AC, de Queiroz, HL, Ramirez-Angulo, H, Ramos, JF, Reis, NFC, Reitsma, J, Revilla, JDC, Riutta, T, Rivas-Torres, G, Robiansyah, I, Rocha, M, Rodrigues, DD, Rodriguez-Ronderos, ME, Rovero, F, Rozak, AH, Rudas, A, Rutishauser, E, Sabatier, D, Sagang, L, Sampaio, AF, Samsoedin, I, Satdichanh, M, Schietti, J, Schöngart, J, Scudeller, VV, Seuaturien, N, Sheil, D, Sierra, R, Silman, MR, Silva, TSF, Guimaraes, JRD, Simo-Droissart, M, Simon, MF, Sist, P, Sousa, TR, Farias, ED, Coelho, LD, Spracklen, DV, Stas, SM, Steinmetz, R, Stevenson, PR, Stropp, J, Sukri, RS, Sunderland, TCH, Suzuki, E, Swaine, MD, Tang, JW, Taplin, J, Taylor, DM, Tello, JS, Terborgh, J, Texier, N, Theilade, I, Thomas, DW, Thomas, R, Thomas, SC, Tirado, M, Toirambe, B, de Toledo, JJ, Tomlinson, KW, Torres-Lezama, A, Tran, HD, Mukendi, JT, Tumaneng, RD, Umaña, MN, Umunay, PM, Giraldo, LEU, Sandoval, EHV, Gamarra, LV, Van Andel, TR, van de Bult, M, van de Pol, J, van der Heijden, G, Vasquez, R, Vela, CIA, Venticinque, EM, Verbeeck, H, Veridiano, RKA, Vicentini, A, Vieira, ICG, Torre, EV, Villarroel, D, Zegarra, BEV, Vleminckx, J, von Hildebrand, P, Vos, VA, Vriesendorp, C, Webb, EL, White, LJT, Wich, S, Wittmann, F, Zagt, R, Zang, RG, Zartman, CE, Zemagho, L, Zent, EL, and Zent, S

Abstract

Trees structure the Earth’s most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most tropical tree species. A focus on the common species may circumvent this challenge. Here we investigate abundance patterns of common tree species using inventory data on 1,003,805 trees with trunk diameters of at least 10 cm across 1,568 locations 1–6 in closed-canopy, structurally intact old-growth tropical forests in Africa, Amazonia and Southeast Asia. We estimate that 2.2%, 2.2% and 2.3% of species comprise 50% of the tropical trees in these regions, respectively. Extrapolating across all closed-canopy tropical forests, we estimate that just 1,053 species comprise half of Earth’s 800 billion tropical trees with trunk diameters of at least 10 cm. Despite differing biogeographic, climatic and anthropogenic histories 7, we find notably consistent patterns of common species and species abundance distributions across the continents. This suggests that fundamental mechanisms of tree community assembly may apply to all tropical forests. Resampling analyses show that the most common species are likely to belong to a manageable list of known species, enabling targeted efforts to understand their ecology. Although they do not detract from the importance of rare species, our results open new opportunities to understand the world’s most diverse forests, including modelling their response to environmental change, by focusing on the common species that constitute the majority of their trees.

Published
2024

2. Consistent patterns of common species across tropical tree communities

Author

Sub Ecology and Biodiversity, Ecology and Biodiversity, Cooper, DLM, Lewis, SL, Sullivan, MJP, Prado, PI, ter Steege, H, Barbier, N, Slik, F, Sonké, B, Ewango, CEN, Adu-Bredu, S, Affum-Baffoe, K, de Aguiar, DPP, Reategui, MAA, Aiba, SI, Albuquerque, BW, Matos, FDD, Alonso, A, Amani, CA, do Amaral, DD, do Amaral, IL, Andrade, A, Miranda, IPD, Angoboy, IB, Araujo-Murakami, A, Arboleda, NC, Arroyo, L, Ashton, P, Aymard, CGA, Baider, C, Baker, TR, Balinga, MPB, Balslev, H, Banin, LF, Bánki, OS, Baraloto, C, Barbosa, EM, Barbosa, FR, Barlow, J, Bastin, JF, Beeckman, H, Begne, S, Bengone, NN, Berenguer, E, Berry, N, Bitariho, R, Boeckx, P, Bogaert, J, Bonyoma, B, Boundja, P, Bourland, N, Bosela, FB, Brambach, F, Brienen, R, Burslem, DFRP, Camargo, JL, Campelo, W, Cano, A, Cárdenas, S, López, DC, Carpanedo, RD, Márquez, YAC, Carvalho, FA, Casas, LF, Castellanos, H, Castilho, CV, Cerón, C, Chapman, CA, Chave, J, Chhang, P, Chutipong, W, Chuyong, GB, Cintra, BBL, Clark, CJ, de Souza, FC, Comiskey, JA, Coomes, DA, Valverde, FC, Correa, DF, Costa, FRC, Costa, JBP, Couteron, P, Culmsee, H, Cuni-Sanchez, A, Dallmeier, F, Damasco, G, Dauby, G, Dávila, N, Doza, HPD, De Alban, JDT, de Assis, RL, De Canniere, C, De Haulleville, T, Carim, MDV, Demarchi, LO, Dexter, KG, Di Fiore, A, Din, HHM, Disney, MI, Djiofack, BY, Djuikouo, MNK, Van Do, T, Doucet, JL, Draper, FC, Droissart, V, Duivenvoorden, JF, Engel, J, Estienne, V, Farfan-Rios, W, Fauset, S, Feeley, KJ, Feitosa, YO, Feldpausch, TR, Ferreira, C, Ferreira, J, Ferreira, LV, Fletcher, CD, Flores, BM, Fofanah, A, Foli, EG, Fonty, E, Fredriksson, GM, Fuentes, A, Galbraith, D, Gonzales, GPG, Garcia-Cabrera, K, García-Villacorta, R, Gomes, VHF, Gómez, RZ, Gonzales, T, Gribel, R, Guedes, MC, Guevara, JE, Hakeem, KR, Hall, JS, Hamer, KC, Harrison, RD, Harris, DJ, Hart, TB, Hector, A, Henkel, TW, Herbohn, J, Hockemba, MBN, Hoffman, B, Holmgren, M, Coronado, ENH, Huamantupa-Chuquimaco, I, Hubau, W, Imai, N, Irume, MV, Jansen, PA, Jeffery, KJ, Jimenez, EM, Jucker, T, Junqueira, AB, Kalamandeen, M, Kamdem, NG, Kartawinata, K, Yakusu, EK, Katembo, JM, Kearsley, E, Kenfack, D, Kessler, M, Khaing, TT, Killeen, TJ, Kitayama, K, Klitgaard, B, Labriere, N, Laumonier, Y, Laurance, SGW, Laurance, WF, Laurent, F, Le, TC, Leal, ME, Novo, EMLD, Levesley, A, Libalah, MB, Licona, JC, Lima, DD, Lindsell, JA, Lopes, A, Lopes, MA, Lovett, JC, Lowe, R, Lozada, JR, Lu, XH, Luambua, NK, Luize, BG, Maas, P, Magalhaes, JLL, Magnusson, WE, Mahayani, NPD, Makana, JR, Malhi, Y, Rincón, LM, Mansor, A, Manzatto, AG, Marimon, BS, Marimon, BH Jr, Marshall, AR, Martins, MP, Mbayu, FM, de Medeiros, MB, Mesones, I, Metali, F, Mihindou, V, Millet, J, Milliken, W, Mogollon, HF, Molino, JF, Said, MNM, Mendoza, AM, Montero, JC, Moore, S, Mostacedo, B, Pinto, LFM, Mukul, SA, Munishi, PKT, Nagamasu, H, Nascimento, HEM, Nascimento, MT, Neill, D, Nilus, R, Noronha, JC, Nsenga, L, Vargas, PN, Ojo, L, Oliveira, AA, de Oliveira, EA, Ondo, FE, Cuenca, WP, Pansini, S, Pansonato, MP, Paredes, MR, Paudel, E, Pauletto, D, Pearson, RG, Pena, JLM, Pennington, RT, Peres, CA, Permana, A, Petronelli, P, Mora, MCP, Phillips, JF, Phillips, OL, Pickavance, G, Piedade, MTF, Pitman, NCA, Ploton, P, Popelier, A, Poulsen, JR, Prieto, A, Primack, RB, Priyadi, H, Qie, L, Quaresma, AC, de Queiroz, HL, Ramirez-Angulo, H, Ramos, JF, Reis, NFC, Reitsma, J, Revilla, JDC, Riutta, T, Rivas-Torres, G, Robiansyah, I, Rocha, M, Rodrigues, DD, Rodriguez-Ronderos, ME, Rovero, F, Rozak, AH, Rudas, A, Rutishauser, E, Sabatier, D, Sagang, L, Sampaio, AF, Samsoedin, I, Satdichanh, M, Schietti, J, Schöngart, J, Scudeller, VV, Seuaturien, N, Sheil, D, Sierra, R, Silman, MR, Silva, TSF, Guimaraes, JRD, Simo-Droissart, M, Simon, MF, Sist, P, Sousa, TR, Farias, ED, Coelho, LD, Spracklen, DV, Stas, SM, Steinmetz, R, Stevenson, PR, Stropp, J, Sukri, RS, Sunderland, TCH, Suzuki, E, Swaine, MD, Tang, JW, Taplin, J, Taylor, DM, Tello, JS, Terborgh, J, Texier, N, Theilade, I, Thomas, DW, Thomas, R, Thomas, SC, Tirado, M, Toirambe, B, de Toledo, JJ, Tomlinson, KW, Torres-Lezama, A, Tran, HD, Mukendi, JT, Tumaneng, RD, Umaña, MN, Umunay, PM, Giraldo, LEU, Sandoval, EHV, Gamarra, LV, Van Andel, TR, van de Bult, M, van de Pol, J, van der Heijden, G, Vasquez, R, Vela, CIA, Venticinque, EM, Verbeeck, H, Veridiano, RKA, Vicentini, A, Vieira, ICG, Torre, EV, Villarroel, D, Zegarra, BEV, Vleminckx, J, von Hildebrand, P, Vos, VA, Vriesendorp, C, Webb, EL, White, LJT, Wich, S, Wittmann, F, Zagt, R, Zang, RG, Zartman, CE, Zemagho, L, Zent, EL, Zent, S, Sub Ecology and Biodiversity, Ecology and Biodiversity, Cooper, DLM, Lewis, SL, Sullivan, MJP, Prado, PI, ter Steege, H, Barbier, N, Slik, F, Sonké, B, Ewango, CEN, Adu-Bredu, S, Affum-Baffoe, K, de Aguiar, DPP, Reategui, MAA, Aiba, SI, Albuquerque, BW, Matos, FDD, Alonso, A, Amani, CA, do Amaral, DD, do Amaral, IL, Andrade, A, Miranda, IPD, Angoboy, IB, Araujo-Murakami, A, Arboleda, NC, Arroyo, L, Ashton, P, Aymard, CGA, Baider, C, Baker, TR, Balinga, MPB, Balslev, H, Banin, LF, Bánki, OS, Baraloto, C, Barbosa, EM, Barbosa, FR, Barlow, J, Bastin, JF, Beeckman, H, Begne, S, Bengone, NN, Berenguer, E, Berry, N, Bitariho, R, Boeckx, P, Bogaert, J, Bonyoma, B, Boundja, P, Bourland, N, Bosela, FB, Brambach, F, Brienen, R, Burslem, DFRP, Camargo, JL, Campelo, W, Cano, A, Cárdenas, S, López, DC, Carpanedo, RD, Márquez, YAC, Carvalho, FA, Casas, LF, Castellanos, H, Castilho, CV, Cerón, C, Chapman, CA, Chave, J, Chhang, P, Chutipong, W, Chuyong, GB, Cintra, BBL, Clark, CJ, de Souza, FC, Comiskey, JA, Coomes, DA, Valverde, FC, Correa, DF, Costa, FRC, Costa, JBP, Couteron, P, Culmsee, H, Cuni-Sanchez, A, Dallmeier, F, Damasco, G, Dauby, G, Dávila, N, Doza, HPD, De Alban, JDT, de Assis, RL, De Canniere, C, De Haulleville, T, Carim, MDV, Demarchi, LO, Dexter, KG, Di Fiore, A, Din, HHM, Disney, MI, Djiofack, BY, Djuikouo, MNK, Van Do, T, Doucet, JL, Draper, FC, Droissart, V, Duivenvoorden, JF, Engel, J, Estienne, V, Farfan-Rios, W, Fauset, S, Feeley, KJ, Feitosa, YO, Feldpausch, TR, Ferreira, C, Ferreira, J, Ferreira, LV, Fletcher, CD, Flores, BM, Fofanah, A, Foli, EG, Fonty, E, Fredriksson, GM, Fuentes, A, Galbraith, D, Gonzales, GPG, Garcia-Cabrera, K, García-Villacorta, R, Gomes, VHF, Gómez, RZ, Gonzales, T, Gribel, R, Guedes, MC, Guevara, JE, Hakeem, KR, Hall, JS, Hamer, KC, Harrison, RD, Harris, DJ, Hart, TB, Hector, A, Henkel, TW, Herbohn, J, Hockemba, MBN, Hoffman, B, Holmgren, M, Coronado, ENH, Huamantupa-Chuquimaco, I, Hubau, W, Imai, N, Irume, MV, Jansen, PA, Jeffery, KJ, Jimenez, EM, Jucker, T, Junqueira, AB, Kalamandeen, M, Kamdem, NG, Kartawinata, K, Yakusu, EK, Katembo, JM, Kearsley, E, Kenfack, D, Kessler, M, Khaing, TT, Killeen, TJ, Kitayama, K, Klitgaard, B, Labriere, N, Laumonier, Y, Laurance, SGW, Laurance, WF, Laurent, F, Le, TC, Leal, ME, Novo, EMLD, Levesley, A, Libalah, MB, Licona, JC, Lima, DD, Lindsell, JA, Lopes, A, Lopes, MA, Lovett, JC, Lowe, R, Lozada, JR, Lu, XH, Luambua, NK, Luize, BG, Maas, P, Magalhaes, JLL, Magnusson, WE, Mahayani, NPD, Makana, JR, Malhi, Y, Rincón, LM, Mansor, A, Manzatto, AG, Marimon, BS, Marimon, BH Jr, Marshall, AR, Martins, MP, Mbayu, FM, de Medeiros, MB, Mesones, I, Metali, F, Mihindou, V, Millet, J, Milliken, W, Mogollon, HF, Molino, JF, Said, MNM, Mendoza, AM, Montero, JC, Moore, S, Mostacedo, B, Pinto, LFM, Mukul, SA, Munishi, PKT, Nagamasu, H, Nascimento, HEM, Nascimento, MT, Neill, D, Nilus, R, Noronha, JC, Nsenga, L, Vargas, PN, Ojo, L, Oliveira, AA, de Oliveira, EA, Ondo, FE, Cuenca, WP, Pansini, S, Pansonato, MP, Paredes, MR, Paudel, E, Pauletto, D, Pearson, RG, Pena, JLM, Pennington, RT, Peres, CA, Permana, A, Petronelli, P, Mora, MCP, Phillips, JF, Phillips, OL, Pickavance, G, Piedade, MTF, Pitman, NCA, Ploton, P, Popelier, A, Poulsen, JR, Prieto, A, Primack, RB, Priyadi, H, Qie, L, Quaresma, AC, de Queiroz, HL, Ramirez-Angulo, H, Ramos, JF, Reis, NFC, Reitsma, J, Revilla, JDC, Riutta, T, Rivas-Torres, G, Robiansyah, I, Rocha, M, Rodrigues, DD, Rodriguez-Ronderos, ME, Rovero, F, Rozak, AH, Rudas, A, Rutishauser, E, Sabatier, D, Sagang, L, Sampaio, AF, Samsoedin, I, Satdichanh, M, Schietti, J, Schöngart, J, Scudeller, VV, Seuaturien, N, Sheil, D, Sierra, R, Silman, MR, Silva, TSF, Guimaraes, JRD, Simo-Droissart, M, Simon, MF, Sist, P, Sousa, TR, Farias, ED, Coelho, LD, Spracklen, DV, Stas, SM, Steinmetz, R, Stevenson, PR, Stropp, J, Sukri, RS, Sunderland, TCH, Suzuki, E, Swaine, MD, Tang, JW, Taplin, J, Taylor, DM, Tello, JS, Terborgh, J, Texier, N, Theilade, I, Thomas, DW, Thomas, R, Thomas, SC, Tirado, M, Toirambe, B, de Toledo, JJ, Tomlinson, KW, Torres-Lezama, A, Tran, HD, Mukendi, JT, Tumaneng, RD, Umaña, MN, Umunay, PM, Giraldo, LEU, Sandoval, EHV, Gamarra, LV, Van Andel, TR, van de Bult, M, van de Pol, J, van der Heijden, G, Vasquez, R, Vela, CIA, Venticinque, EM, Verbeeck, H, Veridiano, RKA, Vicentini, A, Vieira, ICG, Torre, EV, Villarroel, D, Zegarra, BEV, Vleminckx, J, von Hildebrand, P, Vos, VA, Vriesendorp, C, Webb, EL, White, LJT, Wich, S, Wittmann, F, Zagt, R, Zang, RG, Zartman, CE, Zemagho, L, Zent, EL, and Zent, S

Published
2024

3. Functional composition of the Amazonian tree flora and forests.

Author

Ter Steege H, Poorter L, Aguirre-Gutiérrez J, Fortunel C, Magnusson WE, Phillips OL, Pos E, Luize BG, Baraloto C, Guevara JE, Endara MJ, Baker TR, Umaña MN, van der Sande M, Pombo MM, McGlone M, Draper FC, do Amaral IL, Coelho LS, Wittmann F, Almeida Matos FD, Lima Filho DA, Salomão RP, Castilho CV, Carim MJV, Piedade MTF, Sabatier D, Molino JF, Demarchi LO, Cardenas Revilla JD, Schöngart J, Irume MV, Martins MP, da Silva Guimarães JR, Ramos JF, Bánki OS, Quaresma AC, Pitman NCA, Peres CA, de Jesus Rodrigues D, Hawes JE, Almeida EJ, Barbosa LF, Cavalheiro L, Santos MCVD, Leão Novo EMM, Vargas PN, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Honorio Coronado EN, Monteagudo Mendoza A, Carlos Montero J, De Souza CR, Oliveira MVN, Costa FRC, Engel J, Feldpausch TR, Castaño Arboleda N, Durgante FM, Zartman CE, Killeen TJ, Marimon BS, Marimon-Junior BH, Vasquez R, Mostacedo B, Assis RL, Amaral DDD, Castellanos H, Householder JE, de Medeiros MB, Simon MF, Andrade A, Camargo JL, Laurance SGW, Laurance WF, Rincón LM, Mori GB, Schietti J, Sousa TR, de Sousa Farias E, Lopes MA, Magalhães JLL, Nascimento HEM, de Queiroz HL, Vasconcelos CC, Aymard C GA, Brienen R, Sousa Assis PL, Gris D, Ribeiro KAF, Stevenson PR, Araujo-Murakami A, Cintra BBL, Feitosa YO, Mogollón HF, Silman MR, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, García-Villacorta R, Lopes A, Rios Paredes M, Vicentini A, Vieira ICG, Cornejo Valverde F, Alonso A, Arroyo L, Dallmeier F, Gomes VHF, Huari WN, Neill D, Peñuela Mora MC, de Aguiar DPP, Barbosa FR, Bredin YK, de Sá Carpanedo R, Carvalho FA, de Souza FC, Feeley KJ, Gribel R, Haugaasen T, Noronha JC, Pansonato MP, Pipoly JJ 3rd, Barlow J, Berenguer E, Silva IBD, Ferreira J, Ferreira MJ, Fine PVA, Guedes MC, Levis C, Carlos Licona J, Zegarra BEV, Vos VA, Cerón C, Fonty É, Henkel TW, Huamantupa-Chuquimaco I, Silveira M, Stropp J, Thomas R, Daly D, Dexter KG, Milliken W, Molina GP, Pennington T, Albuquerque BW, Campelo W, Claros AF, Klitgaard B, Pena JLM, Montenegro LT, Tello JS, Vriesendorp C, Chave J, Di Fiore A, Hilário RR, de Oliveira Pereira L, Phillips JF, Rivas-Torres G, van Andel TR, Hildebrand PV, Balee W, Barbosa EM, Bonates LCM, Dávila Doza HP, Zárate Gómez R, Gonzales GPG, Gonzales T, Hoffman B, Junqueira AB, Malhi Y, Miranda IPA, Pinto LFM, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Zent EL, Zent S, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Lobo G, Mori Vargas T, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Heijden GV, Torre EV, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Linares-Palomino R, Mendoza C, Mesones I, Parada GA, Torres-Lezama A, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Fortier RP, Garcia-Cabrera K, Hernandez L, Cuenca WP, Pansini S, Pauletto D, Arevalo FR, Sampaio AF, Valderrama Sandoval EH, Gamarra LV, Levesley A, and Pickavance G

Subjects
Brazil, Biomass, Plant Leaves growth & development, Plant Leaves physiology, Soil chemistry, Seeds growth & development, Trees physiology, Trees growth & development, Forests
Abstract

Plants cope with the environment by displaying large phenotypic variation. Two spectra of global plant form and function have been identified: a size spectrum from small to tall species with increasing stem tissue density, leaf size, and seed mass; a leaf economics spectrum reflecting slow to fast returns on investments in leaf nutrients and carbon. When species assemble to communities it is assumed that these spectra are filtered by the environment to produce community level functional composition. It is unknown what are the main drivers for community functional composition in a large area such as Amazonia. We use 13 functional traits, including wood density, seed mass, leaf characteristics, breeding system, nectar production, fruit type, and root characteristics of 812 tree genera (5211 species), and find that they describe two main axes found at the global scale. At community level, the first axis captures not only the 'fast-slow spectrum', but also most size-related traits. Climate and disturbance explain a minor part of this variance compared to soil fertility. Forests on poor soils differ largely in terms of trait values from those on rich soils. Trait composition and soil fertility exert a strong influence on forest functioning: biomass and relative biomass production., Competing Interests: Competing interests: The authors declare no competing interests., (© 2025. The Author(s).)

Published
2025
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4. The biogeography of the Amazonian tree flora.

Author

Luize BG, Tuomisto H, Ekelschot R, Dexter KG, Amaral ILD, Coelho LS, Matos FDA, Lima Filho DA, Salomão RP, Wittmann F, Castilho CV, Carim MJV, Guevara JE, Phillips OL, Magnusson WE, Sabatier D, Cardenas Revilla JD, Molino JF, Irume MV, Martins MP, Guimarães JRDS, Ramos JF, Bánki OS, Piedade MTF, Cárdenas López D, Pitman NCA, Demarchi LO, Schöngart J, de Leão Novo EMM, Núñez Vargas P, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Honorio Coronado EN, Mendoza AM, Montero JC, Costa FRC, Feldpausch TR, Quaresma AC, Castaño Arboleda N, Zartman CE, Killeen TJ, Marimon BS, Marimon BH, Vasquez R, Mostacedo B, Assis RL, Baraloto C, do Amaral DD, Engel J, Petronelli P, Castellanos H, de Medeiros MB, Simon MF, Andrade A, Camargo JL, Laurance WF, Laurance SGW, Rincón LM, Schietti J, Sousa TR, Mori GB, Farias ES, Lopes MA, Magalhães JLL, Nascimento HEM, de Queiroz HL, Vasconcelos CC, Aymard C GA, Brienen R, Stevenson PR, Araujo-Murakami A, Cintra BBL, Baker TR, Feitosa YO, Mogollón HF, Duivenvoorden JF, Peres CA, Silman MR, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, Dávila N, Draper FC, García-Villacorta R, Lopes A, Vicentini A, Valverde FC, Alonso A, Arroyo L, Dallmeier F, Gomes VHF, Jimenez EM, Neill D, Peñuela Mora MC, Noronha JC, de Aguiar DPP, Barbosa FR, Bredin YK, Carpanedo RS, Carvalho FA, Souza FC, Feeley KJ, Gribel R, Haugaasen T, Hawes JE, Pansonato MP, Pipoly JJ 3rd, Paredes MR, Rodrigues DJ, Barlow J, Berenguer E, da Silva IB, Ferreira MJ, Ferreira J, Fine PVA, Guedes MC, Levis C, Licona JC, Villa Zegarra BE, Vos VA, Cerón C, Durgante FM, Fonty É, Henkel TW, Householder JE, Huamantupa-Chuquimaco I, Silveira M, Stropp J, Thomas R, Daly D, Milliken W, Molina GP, Pennington T, Vieira ICG, Albuquerque BW, Campelo W, Fuentes A, Klitgaard B, Pena JLM, Tello JS, Vriesendorp C, Chave J, Di Fiore A, Hilário RR, Pereira LO, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Balee W, Barbosa EM, Bonates LCM, Dávila Doza HP, Zárate Gómez R, Gonzales T, Gallardo Gonzales GP, Hoffman B, Junqueira AB, Malhi Y, Miranda IPA, Pinto LFM, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Zent S, Zent EL, Endara MJ, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Monteiro Flores B, Galbraith D, Holmgren M, Kalamandeen M, Lobo G, Torres Montenegro L, Nascimento MT, Oliveira AA, Pombo MM, Ramirez-Angulo H, Rocha M, Scudeller VV, Umaña MN, van der Heijden G, Vilanova Torre E, Vargas TM, Ahuite Reategui MA, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Parada GA, Torres-Lezama A, Urrego Giraldo LE, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Fortier RP, Garcia-Cabrera K, Hernandez L, Palacios Cuenca W, Pansini S, Pauletto D, Ramirez Arevalo F, Sampaio AF, Valderrama Sandoval EH, Valenzuela Gamarra L, Hirota M, Palma-Silva C, and Ter Steege H

Subjects
Brazil, Biodiversity, Forests, Soil chemistry, Geography, Phylogeography, Trees
Abstract

We describe the geographical variation in tree species composition across Amazonian forests and show how environmental conditions are associated with species turnover. Our analyses are based on 2023 forest inventory plots (1 ha) that provide abundance data for a total of 5188 tree species. Within-plot species composition reflected both local environmental conditions (especially soil nutrients and hydrology) and geographical regions. A broader-scale view of species turnover was obtained by interpolating the relative tree species abundances over Amazonia into 47,441 0.1-degree grid cells. Two main dimensions of spatial change in tree species composition were identified. The first was a gradient between western Amazonia at the Andean forelands (with young geology and relatively nutrient-rich soils) and central-eastern Amazonia associated with the Guiana and Brazilian Shields (with more ancient geology and poor soils). The second gradient was between the wet forests of the northwest and the drier forests in southern Amazonia. Isolines linking cells of similar composition crossed major Amazonian rivers, suggesting that tree species distributions are not limited by rivers. Even though some areas of relatively sharp species turnover were identified, mostly the tree species composition changed gradually over large extents, which does not support delimiting clear discrete biogeographic regions within Amazonia., (© 2024. The Author(s).)

Published
2024
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5. Mapping density, diversity and species-richness of the Amazon tree flora.

Author

Ter Steege H, Pitman NCA, do Amaral IL, de Souza Coelho L, de Almeida Matos FD, de Andrade Lima Filho D, Salomão RP, Wittmann F, Castilho CV, Guevara JE, Veiga Carim MJ, Phillips OL, Magnusson WE, Sabatier D, Revilla JDC, Molino JF, Irume MV, Martins MP, da Silva Guimarães JR, Ramos JF, Bánki OS, Piedade MTF, Cárdenas López D, Rodrigues DJ, Demarchi LO, Schöngart J, Almeida EJ, Barbosa LF, Cavalheiro L, Dos Santos MCV, Luize BG, de Leão Novo EMM, Vargas PN, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Honorio Coronado EN, Monteagudo Mendoza A, Montero JC, Costa FRC, Feldpausch TR, Quaresma AC, Castaño Arboleda N, Zartman CE, Killeen TJ, Marimon BS, Marimon-Junior BH, Vasquez R, Mostacedo B, Assis RL, Baraloto C, do Amaral DD, Engel J, Petronelli P, Castellanos H, de Medeiros MB, Simon MF, Andrade A, Camargo JL, Laurance WF, Laurance SGW, Maniguaje Rincón L, Schietti J, Sousa TR, de Sousa Farias E, Lopes MA, Magalhães JLL, Nascimento HEM, de Queiroz HL, Aymard C GA, Brienen R, Stevenson PR, Araujo-Murakami A, Baker TR, Cintra BBL, Feitosa YO, Mogollón HF, Duivenvoorden JF, Peres CA, Silman MR, Ferreira LV, Lozada JR, Comiskey JA, Draper FC, de Toledo JJ, Damasco G, García-Villacorta R, Lopes A, Vicentini A, Cornejo Valverde F, Alonso A, Arroyo L, Dallmeier F, Gomes VHF, Jimenez EM, Neill D, Peñuela Mora MC, Noronha JC, de Aguiar DPP, Barbosa FR, Bredin YK, de Sá Carpanedo R, Carvalho FA, de Souza FC, Feeley KJ, Gribel R, Haugaasen T, Hawes JE, Pansonato MP, Ríos Paredes M, Barlow J, Berenguer E, da Silva IB, Ferreira MJ, Ferreira J, Fine PVA, Guedes MC, Levis C, Licona JC, Villa Zegarra BE, Vos VA, Cerón C, Durgante FM, Fonty É, Henkel TW, Householder JE, Huamantupa-Chuquimaco I, Pos E, Silveira M, Stropp J, Thomas R, Daly D, Dexter KG, Milliken W, Molina GP, Pennington T, Vieira ICG, Weiss Albuquerque B, Campelo W, Fuentes A, Klitgaard B, Pena JLM, Tello JS, Vriesendorp C, Chave J, Di Fiore A, Hilário RR, de Oliveira Pereira L, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Balee W, Barbosa EM, de Matos Bonates LC, Dávila Doza HP, Zárate Gómez R, Gonzales T, Gallardo Gonzales GP, Hoffman B, Junqueira AB, Malhi Y, de Andrade Miranda IP, Pinto LFM, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Zent EL, Zent S, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Lobo G, Torres Montenegro L, Nascimento MT, Oliveira AA, Pombo MM, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña MN, van der Heijden G, Vilanova Torre E, Reategui MAA, Baider C, Balslev H, Cárdenas S, Casas LF, Endara MJ, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Parada GA, Torres-Lezama A, Urrego Giraldo LE, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Garcia-Cabrera K, Hernandez L, Cuenca WP, Pansini S, Pauletto D, Ramirez Arevalo F, Sampaio AF, Valderrama Sandoval EH, Gamarra LV, Levesley A, Pickavance G, and Melgaço K

Subjects
Forests, Soil, Temperature, Trees, RNA, Long Noncoding
Abstract

Using 2.046 botanically-inventoried tree plots across the largest tropical forest on Earth, we mapped tree species-diversity and tree species-richness at 0.1-degree resolution, and investigated drivers for diversity and richness. Using only location, stratified by forest type, as predictor, our spatial model, to the best of our knowledge, provides the most accurate map of tree diversity in Amazonia to date, explaining approximately 70% of the tree diversity and species-richness. Large soil-forest combinations determine a significant percentage of the variation in tree species-richness and tree alpha-diversity in Amazonian forest-plots. We suggest that the size and fragmentation of these systems drive their large-scale diversity patterns and hence local diversity. A model not using location but cumulative water deficit, tree density, and temperature seasonality explains 47% of the tree species-richness in the terra-firme forest in Amazonia. Over large areas across Amazonia, residuals of this relationship are small and poorly spatially structured, suggesting that much of the residual variation may be local. The Guyana Shield area has consistently negative residuals, showing that this area has lower tree species-richness than expected by our models. We provide extensive plot meta-data, including tree density, tree alpha-diversity and tree species-richness results and gridded maps at 0.1-degree resolution., (© 2023. The Author(s).)

Published
2023
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6. Unraveling Amazon tree community assembly using Maximum Information Entropy: a quantitative analysis of tropical forest ecology.

Author

Pos E, de Souza Coelho L, de Andrade Lima Filho D, Salomão RP, Amaral IL, de Almeida Matos FD, Castilho CV, Phillips OL, Guevara JE, de Jesus Veiga Carim M, López DC, Magnusson WE, Wittmann F, Irume MV, Martins MP, Sabatier D, da Silva Guimarães JR, Molino JF, Bánki OS, Piedade MTF, Pitman NCA, Mendoza AM, Ramos JF, Hawes JE, Almeida EJ, Barbosa LF, Cavalheiro L, Dos Santos MCV, Luize BG, de Leão Novo EMM, Vargas PN, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Coronado ENH, Montero JC, Marimon BS, Marimon-Junior BH, Feldpausch TR, Duque A, Baraloto C, Arboleda NC, Engel J, Petronelli P, Zartman CE, Killeen TJ, Vasquez R, Mostacedo B, Assis RL, Schöngart J, Castellanos H, de Medeiros MB, Simon MF, Andrade A, Camargo JL, Demarchi LO, Laurance WF, Laurance SGW, de Sousa Farias E, Lopes MA, Magalhães JLL, Nascimento HEM, de Queiroz HL, Aymard GAC, Brienen R, Revilla JDC, Costa FRC, Quaresma A, Vieira ICG, Cintra BBL, Stevenson PR, Feitosa YO, Duivenvoorden JF, Mogollón HF, Ferreira LV, Comiskey JA, Draper F, de Toledo JJ, Damasco G, Dávila N, García-Villacorta R, Lopes A, Vicentini A, Noronha JC, Barbosa FR, de Sá Carpanedo R, Emilio T, Levis C, de Jesus Rodrigues D, Schietti J, Souza P, Alonso A, Dallmeier F, Gomes VHF, Lloyd J, Neill D, de Aguiar DPP, Araujo-Murakami A, Arroyo L, Carvalho FA, de Souza FC, do Amaral DD, Feeley KJ, Gribel R, Pansonato MP, Barlow J, Berenguer E, Ferreira J, Fine PVA, Guedes MC, Jimenez EM, Licona JC, Mora MCP, Peres CA, Zegarra BEV, Cerón C, Henkel TW, Maas P, Silveira M, Stropp J, Thomas-Caesar R, Baker TR, Daly D, Dexter KG, Householder JE, Huamantupa-Chuquimaco I, Pennington T, Paredes MR, Fuentes A, Pena JLM, Silman MR, Tello JS, Chave J, Valverde FC, Di Fiore A, Hilário RR, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Barbosa EM, de Matos Bonates LC, Doza HPD, Fonty É, Gómez RZ, Gonzales T, Gonzales GPG, Guillaumet JL, Hoffman B, Junqueira AB, Malhi Y, de Andrade Miranda IP, Pinto LFM, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Vos VA, Zent EL, Zent S, Albuquerque BW, Cano A, Correa DF, Costa JBP, Flores BM, Holmgren M, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña MN, van der Heijden G, Torre EV, Vriesendorp C, Wang O, Young KR, Reategui MAA, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Torres-Lezama A, Giraldo LEU, Villarroel D, Zagt R, Alexiades MN, Garcia-Cabrera K, Hernandez L, Milliken W, Cuenca WP, Pansini S, Pauletto D, Arevalo FR, Sampaio AF, Sandoval EHV, Gamarra LV, Boenisch G, Kattge J, Kraft N, Levesley A, Melgaço K, Pickavance G, Poorter L, and Ter Steege H

Subjects
Entropy, Forests, Plants, Ecology, Tropical Climate, Ecosystem, Biodiversity
Abstract

In a time of rapid global change, the question of what determines patterns in species abundance distribution remains a priority for understanding the complex dynamics of ecosystems. The constrained maximization of information entropy provides a framework for the understanding of such complex systems dynamics by a quantitative analysis of important constraints via predictions using least biased probability distributions. We apply it to over two thousand hectares of Amazonian tree inventories across seven forest types and thirteen functional traits, representing major global axes of plant strategies. Results show that constraints formed by regional relative abundances of genera explain eight times more of local relative abundances than constraints based on directional selection for specific functional traits, although the latter does show clear signals of environmental dependency. These results provide a quantitative insight by inference from large-scale data using cross-disciplinary methods, furthering our understanding of ecological dynamics., (© 2023. The Author(s).)

Published
2023
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7. Biased-corrected richness estimates for the Amazonian tree flora.

Author

Ter Steege H, Prado PI, Lima RAF, Pos E, de Souza Coelho L, de Andrade Lima Filho D, Salomão RP, Amaral IL, de Almeida Matos FD, Castilho CV, Phillips OL, Guevara JE, de Jesus Veiga Carim M, Cárdenas López D, Magnusson WE, Wittmann F, Martins MP, Sabatier D, Irume MV, da Silva Guimarães JR, Molino JF, Bánki OS, Piedade MTF, Pitman NCA, Ramos JF, Monteagudo Mendoza A, Venticinque EM, Luize BG, Núñez Vargas P, Silva TSF, de Leão Novo EMM, Reis NFC, Terborgh J, Manzatto AG, Casula KR, Honorio Coronado EN, Montero JC, Duque A, Costa FRC, Castaño Arboleda N, Schöngart J, Zartman CE, Killeen TJ, Marimon BS, Marimon-Junior BH, Vasquez R, Mostacedo B, Demarchi LO, Feldpausch TR, Engel J, Petronelli P, Baraloto C, Assis RL, Castellanos H, Simon MF, de Medeiros MB, Quaresma A, Laurance SGW, Rincón LM, Andrade A, Sousa TR, Camargo JL, Schietti J, Laurance WF, de Queiroz HL, Nascimento HEM, Lopes MA, de Sousa Farias E, Magalhães JLL, Brienen R, Aymard C GA, Revilla JDC, Vieira ICG, Cintra BBL, Stevenson PR, Feitosa YO, Duivenvoorden JF, Mogollón HF, Araujo-Murakami A, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, Dávila N, Lopes A, García-Villacorta R, Draper F, Vicentini A, Cornejo Valverde F, Lloyd J, Gomes VHF, Neill D, Alonso A, Dallmeier F, de Souza FC, Gribel R, Arroyo L, Carvalho FA, de Aguiar DPP, do Amaral DD, Pansonato MP, Feeley KJ, Berenguer E, Fine PVA, Guedes MC, Barlow J, Ferreira J, Villa B, Peñuela Mora MC, Jimenez EM, Licona JC, Cerón C, Thomas R, Maas P, Silveira M, Henkel TW, Stropp J, Paredes MR, Dexter KG, Daly D, Baker TR, Huamantupa-Chuquimaco I, Milliken W, Pennington T, Tello JS, Pena JLM, Peres CA, Klitgaard B, Fuentes A, Silman MR, Di Fiore A, von Hildebrand P, Chave J, van Andel TR, Hilário RR, Phillips JF, Rivas-Torres G, Noronha JC, Prieto A, Gonzales T, de Sá Carpanedo R, Gonzales GPG, Gómez RZ, de Jesus Rodrigues D, Zent EL, Ruschel AR, Vos VA, Fonty É, Junqueira AB, Doza HPD, Hoffman B, Zent S, Barbosa EM, Malhi Y, de Matos Bonates LC, de Andrade Miranda IP, Silva N, Barbosa FR, Vela CIA, Pinto LFM, Rudas A, Albuquerque BW, Umaña MN, Carrero Márquez YA, van der Heijden G, Young KR, Tirado M, Correa DF, Sierra R, Costa JBP, Rocha M, Vilanova Torre E, Wang O, Oliveira AA, Kalamandeen M, Vriesendorp C, Ramirez-Angulo H, Holmgren M, Nascimento MT, Galbraith D, Flores BM, Scudeller VV, Cano A, Ahuite Reategui MA, Mesones I, Baider C, Mendoza C, Zagt R, Urrego Giraldo LE, Ferreira C, Villarroel D, Linares-Palomino R, Farfan-Rios W, Farfan-Rios W, Casas LF, Cárdenas S, Balslev H, Torres-Lezama A, Alexiades MN, Garcia-Cabrera K, Valenzuela Gamarra L, Valderrama Sandoval EH, Ramirez Arevalo F, Hernandez L, Sampaio AF, Pansini S, Palacios Cuenca W, de Oliveira EA, Pauletto D, Levesley A, Melgaço K, and Pickavance G

Subjects
Brazil, Biodiversity, Classification methods, Forests, Rivers, Trees classification
Abstract

Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia is best approximated by a logseries with aggregated individuals, where aggregation increases with rarity. By averaging several methods to estimate total richness, we confirm that over 15,000 tree species are expected to occur in Amazonia. We also show that using ten times the number of plots would result in an increase to just ~50% of those 15,000 estimated species. To get a more complete sample of all tree species, rigorous field campaigns may be needed but the number of trees in Amazonia will remain an estimate for years to come.

Published
2020
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8. Rarity of monodominance in hyperdiverse Amazonian forests.

Author

Ter Steege H, Henkel TW, Helal N, Marimon BS, Marimon-Junior BH, Huth A, Groeneveld J, Sabatier D, Coelho LS, Filho DAL, Salomão RP, Amaral IL, Matos FDA, Castilho CV, Phillips OL, Guevara JE, Carim MJV, Cárdenas López D, Magnusson WE, Wittmann F, Irume MV, Martins MP, Guimarães JRDS, Molino JF, Bánki OS, Piedade MTF, Pitman NCA, Mendoza AM, Ramos JF, Luize BG, Moraes de Leão Novo EM, Núñez Vargas P, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Honorio Coronado EN, Montero JC, Feldpausch TR, Duque A, Costa FRC, Arboleda NC, Schöngart J, Killeen TJ, Vasquez R, Mostacedo B, Demarchi LO, Assis RL, Baraloto C, Engel J, Petronelli P, Castellanos H, de Medeiros MB, Quaresma A, Simon MF, Andrade A, Camargo JL, Laurance SGW, Laurance WF, Rincón LM, Schietti J, Sousa TR, de Sousa Farias E, Lopes MA, Magalhães JLL, Mendonça Nascimento HE, Lima de Queiroz H, Aymard C GA, Brienen R, Revilla JDC, Vieira ICG, Cintra BBL, Stevenson PR, Feitosa YO, Duivenvoorden JF, Mogollón HF, Araujo-Murakami A, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, Dávila N, Draper F, García-Villacorta R, Lopes A, Vicentini A, Alonso A, Dallmeier F, Gomes VHF, Lloyd J, Neill D, de Aguiar DPP, Arroyo L, Carvalho FA, de Souza FC, do Amaral DD, Feeley KJ, Gribel R, Pansonato MP, Barlow J, Berenguer E, Ferreira J, Fine PVA, Guedes MC, Jimenez EM, Licona JC, Peñuela Mora MC, Villa B, Cerón C, Maas P, Silveira M, Stropp J, Thomas R, Baker TR, Daly D, Dexter KG, Huamantupa-Chuquimaco I, Milliken W, Pennington T, Ríos Paredes M, Fuentes A, Klitgaard B, Pena JLM, Peres CA, Silman MR, Tello JS, Chave J, Cornejo Valverde F, Di Fiore A, Hilário RR, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Noronha JC, Barbosa EM, Barbosa FR, de Matos Bonates LC, Carpanedo RS, Dávila Doza HP, Fonty É, GómeZárate Z R, Gonzales T, Gallardo Gonzales GP, Hoffman B, Junqueira AB, Malhi Y, Miranda IPA, Pinto LFM, Prieto A, Rodrigues DJ, Rudas A, Ruschel AR, Silva N, Vela CIA, Vos VA, Zent EL, Zent S, Weiss Albuquerque B, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña Medina MN, van der Heijden G, Vilanova Torre E, Vriesendorp C, Wang O, Young KR, Ahuite Reategui MA, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Torres-Lezama A, Giraldo LEU, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Garcia-Cabrera K, Hernandez L, Palacios Cuenca W, Pansini S, Pauletto D, Ramirez Arevalo F, Sampaio AF, Sandoval EHV, Valenzuela Gamarra L, Levesley A, Pickavance G, and Melgaço K

Abstract

Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such "monodominant" forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tree Diversity Network (ATDN). Utilizing a simple defining metric of at least half of the trees ≥ 10 cm diameter belonging to one species, we found only a few occurrences of monodominance in Amazonia, and the phenomenon was not significantly linked to previously hypothesized life history traits such wood density, seed mass, ectomycorrhizal associations, or Rhizobium nodulation. In our analysis, coppicing (the formation of sprouts at the base of the tree or on roots) was the only trait significantly linked to monodominance. While at specific locales coppicing or ectomycorrhizal associations may confer a considerable advantage to a tree species and lead to its monodominance, very few species have these traits. Mining of the ATDN dataset suggests that monodominance is quite rare in Amazonia, and may be linked primarily to edaphic factors.

Published
2019
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9. Species Distribution Modelling: Contrasting presence-only models with plot abundance data.

Author

Gomes VHF, IJff SD, Raes N, Amaral IL, Salomão RP, de Souza Coelho L, de Almeida Matos FD, Castilho CV, de Andrade Lima Filho D, López DC, Guevara JE, Magnusson WE, Phillips OL, Wittmann F, de Jesus Veiga Carim M, Martins MP, Irume MV, Sabatier D, Molino JF, Bánki OS, da Silva Guimarães JR, Pitman NCA, Piedade MTF, Mendoza AM, Luize BG, Venticinque EM, de Leão Novo EMM, Vargas PN, Silva TSF, Manzatto AG, Terborgh J, Reis NFC, Montero JC, Casula KR, Marimon BS, Marimon BH, Coronado ENH, Feldpausch TR, Duque A, Zartman CE, Arboleda NC, Killeen TJ, Mostacedo B, Vasquez R, Schöngart J, Assis RL, Medeiros MB, Simon MF, Andrade A, Laurance WF, Camargo JL, Demarchi LO, Laurance SGW, de Sousa Farias E, Nascimento HEM, Revilla JDC, Quaresma A, Costa FRC, Vieira ICG, Cintra BBL, Castellanos H, Brienen R, Stevenson PR, Feitosa Y, Duivenvoorden JF, Aymard C GA, Mogollón HF, Targhetta N, Comiskey JA, Vicentini A, Lopes A, Damasco G, Dávila N, García-Villacorta R, Levis C, Schietti J, Souza P, Emilio T, Alonso A, Neill D, Dallmeier F, Ferreira LV, Araujo-Murakami A, Praia D, do Amaral DD, Carvalho FA, de Souza FC, Feeley K, Arroyo L, Pansonato MP, Gribel R, Villa B, Licona JC, Fine PVA, Cerón C, Baraloto C, Jimenez EM, Stropp J, Engel J, Silveira M, Mora MCP, Petronelli P, Maas P, Thomas-Caesar R, Henkel TW, Daly D, Paredes MR, Baker TR, Fuentes A, Peres CA, Chave J, Pena JLM, Dexter KG, Silman MR, Jørgensen PM, Pennington T, Di Fiore A, Valverde FC, Phillips JF, Rivas-Torres G, von Hildebrand P, van Andel TR, Ruschel AR, Prieto A, Rudas A, Hoffman B, Vela CIA, Barbosa EM, Zent EL, Gonzales GPG, Doza HPD, de Andrade Miranda IP, Guillaumet JL, Pinto LFM, de Matos Bonates LC, Silva N, Gómez RZ, Zent S, Gonzales T, Vos VA, Malhi Y, Oliveira AA, Cano A, Albuquerque BW, Vriesendorp C, Correa DF, Torre EV, van der Heijden G, Ramirez-Angulo H, Ramos JF, Young KR, Rocha M, Nascimento MT, Medina MNU, Tirado M, Wang O, Sierra R, Torres-Lezama A, Mendoza C, Ferreira C, Baider C, Villarroel D, Balslev H, Mesones I, Giraldo LEU, Casas LF, Reategui MAA, Linares-Palomino R, Zagt R, Cárdenas S, Farfan-Rios W, Sampaio AF, Pauletto D, Sandoval EHV, Arevalo FR, Huamantupa-Chuquimaco I, Garcia-Cabrera K, Hernandez L, Gamarra LV, Alexiades MN, Pansini S, Cuenca WP, Milliken W, Ricardo J, Lopez-Gonzalez G, Pos E, and Ter Steege H

Subjects
Brazil, Chrysobalanaceae physiology, Fabaceae physiology, Humans, Polygonaceae physiology, Conservation of Natural Resources statistics & numerical data, Models, Statistical, Plant Dispersal physiology, Trees physiology
Abstract

Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species' area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.

Published
2018
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