195 results on '"Pinto, Cecilia"'
Search Results
2. Full-length single-molecule protein fingerprinting
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Filius, Mike, van Wee, Raman, de Lannoy, Carlos, Westerlaken, Ilja, Li, Zeshi, Kim, Sung Hyun, de Agrela Pinto, Cecilia, Wu, Yunfei, Boons, Geert-Jan, Pabst, Martin, de Ridder, Dick, and Joo, Chirlmin
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- 2024
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3. Mulheres pretas da Enfermagem : escrevivência atrevivida em oralitura na COVID-19
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Alves, Míriam Cristiane, de Sant’Anna, Ademiel, and Izidoro-Pinto, Cecília Maria
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- 2023
4. Black women in nursing : escrevivência atrevivida in oralitura on COVID-19
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Alves, Míriam Cristiane, de Sant’Anna, Ademiel, and Izidoro-Pinto, Cecília Maria
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- 2023
5. Cytokine gene functional polymorphisms and phenotypic expression as predictors of evolution from latent to clinical rheumatic heart disease
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Tormin, Julia P.A.S., Nascimento, Bruno R., Sable, Craig A., da Silva, Jose Luiz P., Brandao-de-Resende, Camilo, Rocha, Luiz Paulo C., Pinto, Cecília H.R., Neves, Eula Graciele A., Macedo, Frederico V.B., Fraga, Clara L., Oliveira, Kaciane K.B., Diamantino, Adriana C., Ribeiro, Antônio Luiz P., Beaton, Andrea Z., Nunes, Maria Carmo P., and Dutra, Walderez O.
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- 2021
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6. Characterizing proteins in a native bacterial environment using solid-state NMR spectroscopy
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Narasimhan, Siddarth, Pinto, Cecilia, Lucini Paioni, Alessandra, van der Zwan, Johan, Folkers, Gert E., and Baldus, Marc
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- 2021
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7. Scientific, Technical and Economic Committee for Fisheries 73rd plenary report (STECF-PLEN-23-02)
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Bastardie, Francois, Borges, Lisa, Casey, John, Daskalov, Georgi, Drouineau, Hilaire, Goti Aralucea, Leyre, Grati, Fabio, Hamon, Katell, Ibaibarriaga, Leire, Jardim, Ernesto, Jung, Armelle, Ligas, Alessandro, Mannini, Alessandro, Martin, Paloma, Moore, Claire, Motova-Surmava, Arina, Nielsen, Rasmus, Nimmegeers, Sofie, Nord, Jenny, Pinto, Cecilia, Prellezo, Raúl, Raid, Tiit, Rihan, Dominic, Sabatella, Evelina, Sampedro-Pastor, Paz, Somarakis, Stylianos, Stransky, Christoph, Ulrich, Clara, Uriarte, Andres, Valentinsson, Daniel, van Hoof, Luc, Velasco Guevara, Francisco, Vrgoc, Nedo, Bastardie, Francois, Borges, Lisa, Casey, John, Daskalov, Georgi, Drouineau, Hilaire, Goti Aralucea, Leyre, Grati, Fabio, Hamon, Katell, Ibaibarriaga, Leire, Jardim, Ernesto, Jung, Armelle, Ligas, Alessandro, Mannini, Alessandro, Martin, Paloma, Moore, Claire, Motova-Surmava, Arina, Nielsen, Rasmus, Nimmegeers, Sofie, Nord, Jenny, Pinto, Cecilia, Prellezo, Raúl, Raid, Tiit, Rihan, Dominic, Sabatella, Evelina, Sampedro-Pastor, Paz, Somarakis, Stylianos, Stransky, Christoph, Ulrich, Clara, Uriarte, Andres, Valentinsson, Daniel, van Hoof, Luc, Velasco Guevara, Francisco, and Vrgoc, Nedo
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Commission Decision of 25 February 2016 setting up a Scientific, Technical and Economic Committee for Fisheries, C(2016) 1084, OJ C 74, 26.2.2016, p. 4–10. The Commission may consult the group on any matter relating to marine and fisheries biology, fishing gear technology, fisheries economics, fisheries governance, ecosystem effects of fisheries, aquaculture or similar disciplines. The Scientific, Technical and Economic Committee for Fisheries held its 73 rd plenary from 10 to 14 July 2023.
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- 2024
8. Full-length single-molecule protein fingerprinting
- Author
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Afd Chemical Biology and Drug Discovery, Sub Chemical Biology and Drug Discovery, Filius, Mike, van Wee, Raman, de Lannoy, Carlos, Westerlaken, Ilja, Li, Zeshi, Kim, Sung Hyun, de Agrela Pinto, Cecilia, Wu, Yunfei, Boons, Geert-Jan, Pabst, Martin, de Ridder, Dick, Joo, Chirlmin, Afd Chemical Biology and Drug Discovery, Sub Chemical Biology and Drug Discovery, Filius, Mike, van Wee, Raman, de Lannoy, Carlos, Westerlaken, Ilja, Li, Zeshi, Kim, Sung Hyun, de Agrela Pinto, Cecilia, Wu, Yunfei, Boons, Geert-Jan, Pabst, Martin, de Ridder, Dick, and Joo, Chirlmin
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- 2024
9. Integration of multiple sparse and limited datasets helps to inform spatial conservation for an endangered marine species
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Pinto, Cecilia
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577 ,Dipturus - Abstract
To develop spatial conservation strategies for endangered species it is necessary to understand the drivers of their population dynamics through time and space. When dealing with data limited species it is fundamentally important to develop and apply methods that identify which parameters future data collection should focus on to fill critical knowledge gaps which hinder robust decision making for spatial management. The aim of this study was to integrate data from independent sources in the parameterisation of a spatially realistic individual-based model to explore the potential of defining conservation measures for an endangered species. The case study species in this thesis is Dipturus sp. intermedia (flapper skate), a species that is the focus of conservation attention especially off the West Coast of Scotland. In order to estimate annual survival and transition probabilities between sampling sites, a multisite capture-mark-recapture model was developed in a Bayesian framework, accounting for the heterogeneous effort and individual heterogeneity in the data. Annual survival for the flapper skate was estimated to have been strongly decreasing in the last 30 years. The population showed high residency between sampling sites but connectivity is still present along the sea lochs of the West coast of Scotland. Vertical movement behaviour of flapper skate was found to be mainly driven by the cycle of spring and neap tides. An environmental suitability model suggested that flapper skate distribution is mainly driven by depth and distance from the coast. A novel approach was taken to validate the suitability predictions by using geolocated locations obtained from the vertical movement data. Finally the parameters estimated in the previous chapters were integrated in a last chapter applying an individual based spatial dynamic model to test its potential in defining conservation measures. To illustrate the potential of this approach for conservation planning, nine different scenarios were run testing different levels of fishing mortality and different spatial extent of fishing mortality. This work has demonstrated that, even when individual data sources are of moderate or low quality, combining multiple data types with analysis using contemporary statistical methods and the use of emerging spatial demographic models can provide a valuable approach to inform urgent conservation decisions.
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- 2015
10. Implementing a chronic pain ambulatory care: preliminary results
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de Castro, Silvana, Lima Cavalcanti, Ismar, Barrucand, Louis, Izidoro Pinto, Cecília, Rezende Assad, Alexandra, and Verçosa, Nubia
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- 2019
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11. Implementação de atendimento ambulatorial para dor crônica: resultados preliminares
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de Castro, Silvana, Cavalcanti, Ismar Lima, Barrucand, Louis, Pinto, Cecília Izidoro, Assad, Alexandra Rezende, and Verçosa, Nubia
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- 2019
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12. Studying assembly of the BAM complex in native membranes by cellular solid-state NMR spectroscopy
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Pinto, Cecilia, Mance, Deni, Julien, Manon, Daniels, Mark, Weingarth, Markus, and Baldus, Marc
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- 2019
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13. Surface chemistry in the interstellar medium - I - H2 formation by Langmuir-Hinshelwood and Eley-Rideal mechanisms
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Bourlot, Jacques Le, Petit, Franck Le, Pinto, Cecilia, Roueff, Evelyne, and Roy, Fabrice
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Astrophysics - Astrophysics of Galaxies - Abstract
H2 formation remains a major issue for the understanding of interstellar physics. We investigate H2 formation in the interstellar medium at the light of the most recent experimental and theoretical data. We implemented detailed H2 formation mechanisms on grains surface in the Meudon PDR code : i) Langmuir-Hinshelwood mechanism taking into account the contribution of the different sizes of dust grains in the diffusion processes and ii) the Eley-Rideal mechanism. We show that, thanks to these processes, H2 can be formed even in regions where dust temperature is larger than 25 K. We also show that formation by Eley-Rideal mechanism can be a significant source of heating of the gas. We derive line intensities for various astrophysical conditions. Such an approach results in an enhanced H2 formation rate compared to the standard formation determined by observations in absorption in the UV. We derive some H2 line intensities for isobaric and isochoric models., Comment: Article accepted in A&A
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- 2012
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14. Three-fluid plasmas in star formation II. Momentum transfer rate coefficients
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Pinto, Cecilia and Galli, Daniele
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Astrophysics - Abstract
The charged component of the insterstellar medium consists of atomic and molecular ions, electrons, and charged dust grains, coupled to the local Galactic magnetic field. Collisions between neutral particles (mostly atomic or molecular hydrogen) and charged species, and between the charged species themselves, affect the magnetohydrodynamical behaviour of the medium and the dissipation of electric currents. The friction force due to elastic collisions between particles of different species in the multi-component interstellar plasma is a nonlinear function of the temperature of each species and the Mach number of the relative drift velocity. The aim of this paper is to provide an accurate and, as far as possible, complete set of momentum transfer rate coefficients for magnetohydrodynamical studies of the interstellar medium. Momentum transfer rates are derived from available experimental data and theoretical calculations of cross sections within the classic approach developed by Boltzmann and Langevin for a wide range of values of the temperature and the drift velocity. Accurate numerical values for momentum transfer rates are obtained and fitted to simple analytical formulae expressing the dependence of the results on the gas temperature and the relative drift velocity. The often used polarization approximation is in satisfactory agreement with our results only for collisions between H2and molecular ions (HCO+, H3+). For other kinds of collisions, the polarization approximation fails by large factors, and must be replaced by more accurate expressions., Comment: 13 pages, 21 figures, accepted for publication on A&A
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- 2008
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15. Three-fluid plasmas in star formation I. Magneto-hydrodynamic equations
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Pinto, Cecilia, Galli, Daniele, and Bacciotti, Francesca
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Astrophysics - Abstract
Interstellar magnetic fields influence all stages of the process of star formation, from the collapse of molecular cloud cores to the formation of protostellar jets. This requires us to have a full understanding of the physical properties of magnetized plasmas of different degrees of ionization for a wide range of densities and temperatures. We derive general equations governing the magneto-hydrodynamic evolution of a three-fluid medium of arbitrary ionization, also including the possibility of charged dust grains as the main charge carriers. In a companion paper (Pinto & Galli 2007), we complement this analysis computing accurate expressions of the collisional coupling coefficients. Over spatial and temporal scales larger than the so-called large-scale plasma limit and the collision-dominated plasma limit, and for non-relativistic fluid speeds, we obtain an advection-diffusion for the magnetic field. We derive the general expressions for the resistivities, the diffusion time scales and the heating rates in a three-fluid medium and we use them to estimate the evolution of the magnetic field in molecular clouds and protostellar jets. Collisions between charged particles significantly increase the value of the Ohmic resistivity during the process of cloud collapse, affecting in particular the decoupling of matter and magnetic field and enhancing the rate of energy dissipation. The Hall resistivity can take larger values than previously found when the negative charge is mostly carried by dust grains. In weakly-or mildy-ionized protostellar jets, ambipolar diffusion is found to occur on a time scale comparable to the dynamical time scale, limiting the validity of steady-state and nondissipative models to study the jet's structure., Comment: 16 pages, 5 figures, accepted for publication on A&A
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- 2008
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16. Combining multiple data sets to unravel the spatiotemporal dynamics of a data-limited fish stock
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Pinto, Cecilia, Travers-Trolet, Morgane, Macdonald, Jed I., Rivot, Etienne, and Vermard, Youen
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Fisheries -- Analysis ,Stocks -- Analysis ,Fish industry -- Analysis ,Earth sciences - Abstract
The biological status of many commercially exploited fishes remains unknown, mostly due to a lack of data necessary for their assessment. Investigating the spatiotemporal dynamics of such species can lead to new insights into population processes and foster a path towards improved spatial management decisions. Here, we focused on striped red mullet (Mullus surmuletus), a widespread yet data-limited species of high commercial importance. Aiming to quantify range dynamics in this data-poor scenario, we combined fishery-dependent and -independent data sets through a series of Bayesian mixed-effects models designed to capture monthly and seasonal occurrence patterns near the species' northern range limit across 20 years. Combining multiple data sets allowed us to cover the entire distribution of the northern population of M. surmuletus, exploring dynamics at different spatiotemporal scales and identifying key environmental drivers (i.e., sea surface temperature, salinity) that shape occurrence patterns. Our results demonstrate that even when process and (or) observation uncertainty is high, or when data are sparse, if we combine multiple data sets within a hierarchical modelling framework, accurate and useful spatial predictions can still be made. L'etat biologique de nombreuses especes commerciales n'est pas connu, principalement par manque de donnees necessaires a revaluation de celle-ci. Explorer les dynamiques spatio-temporelles des especes peut aboutir a une meilleure comprehension des drivers de ces dynamiques et potentiellement apporter les informations necessaires a la mise en place de mesures de gestion spatiale. Ce travail se concentre sur le rouget barbet de roche (Mullus surmuletus), une espece commune a forte valeur commerciale mais sur laquelle les donnees disponibles sont limitees. L'objectif de cette etude etait de quantifier les dynamiques spatiales et saisonnieres de ces 20 dernieres annees d'une espece a donnees limitees en integrant donnees de peches scientifiques et commerciales dans un cadre de modeles mixtes Bayesiens. Cette methode de modelisation integree nous a permis d'integrer plusieurs sources de donnees et de couvrir toute la distribution de la population nord de M. surmuletus ainsi que de comprendre les distributions a differentes echelles spatio-temporelles et d'identifier les principales covariables environnementales definissant la presence de l'espece. Nos resultats montrent que meme s'il y a un haut niveau d'incertitude dans le processus et (ou) l'observation dans les zones ou les donnees sont le plus limitees, l'integration de donnees multiples dans un cadre de modelisation hierarchique permet d'obtenir des predictions spatiales utiles et precises., Introduction Long-term time series are a valuable resource for testing hypotheses on how temporal variability in recruitment or abundance or patterns of range expansion or distributional shift may relate to [...]
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- 2019
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17. Setting population targets for mammals using body mass as a predictor of population persistence
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Hilbers, Jelle P., Santini, Luca, Visconti, Piero, Schipper, Aafke M., Pinto, Cecilia, Rondinini, Carlo, and Huijbregts, Mark A.J.
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- 2017
18. Full-Length Single-Molecule Protein Fingerprinting
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Filius, Mike, primary, van Wee, Raman, additional, de Lannoy, Carlos, additional, Westerlaken, Ilja, additional, Li, Zhesi, additional, Kim, Sung Hyun, additional, de Agrela Pinto, Cecilia, additional, Wu, Yunfei, additional, Boons, Geert-Jan, additional, Pabst, Martin, additional, de Ridder, Dick, additional, and Joo, Chirlmin, additional
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- 2023
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19. The embedding of syntactic change in personal letters from Santa Catarina: subject order and anaphoric direct object/O encaixamento da mudanca sintatica em cartas pessoais de Santa Catarina: ordem do sujeito e objeto direto anaforico
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Coelho, Izete Lehmkuhl and Pinto, Cecilia Augusta Vieira
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- 2018
20. Scientific, Technical and Economic Committee for Fisheries (STECF), Evaluation of economic indicators and closure areas in the western Mediterranean. (STECF-23-01)
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Pinto, Cecilia, Döring, Ralf, Accadia, Paolo, Bastardie, Francois, Billet, Norbert, Bitetto, Isabella, Certain, Gregoire, Drouineau, Hilaire, Garriga Panisello, Mariona, Gourguet, Sophie, Grati, Fabio, Kupschus, Sven, Lehuta, Sigrid, Mannini, Alessandro, Merzéréaud, Mathieu, Phan, Tuan Anh, Pierucci, Andrea, Russo, Tommaso, Sabatella, Evelina Carme, Stefani, Matteo, Tassetti, Anna Nora, Viva, Claudio, Pinto, Cecilia, Doering, Ralf, Kupschus, Sven, and Pierucci, Andrea
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Common Fishery Policy ,Closure areas ,STECF ,Fishery management ,Economic indicators ,European Commission - Abstract
Commission Decision of 25 February 2016 setting up a Scientific, Technical and Economic Committee for Fisheries, C(2016) 1084, OJ C 74, 26.2.2016, p. 4–10. The Commission may consult the group on any matter relating to marine and fisheries biology, fishing gear technology, fisheries economics, fisheries governance, ecosystem effects of fisheries, aquaculture or similar disciplines. This report is the 10th of a suite of STECF EWG reports dedicated to the evaluation of the implementation of the Western Mediterranean Sea Multi-Annual management Plan (hereafter, MAP), following EWG reports 18-09, 18-13, 19-01, 19-14, 20-13, 21-01, 21- 13, 22-01 and 22-11. The group was requested to continue the development of socio-economic indicators to be used in the evaluation of management measures for the West Med MAP in both West Med management units (EMU1 and EMU 1) (TOR1). Two roadmaps were discussed, a short term approach and a long term approach which would consider the expansion of all the mixed-fisheries bio-economic models to both management units. As a first step, the group focused on the proposal of harmonizing the economic indicators across the models implemented (TOR2). The group was than requested to further develop the approach implemented during EWG 22-01 to identify persistence hotspots of the six target species of the West Med MAP using scientific survey data (MEDITS) in combination to commercial spatial data (VMS joined with logbooks), to test existing and additional closure areas (TOR 3). The group was also requested to revise Article 8 of the 2023 fishing opportunities for the West Med MAP (COUNCIL REGULATION (EU) 2023/195), which lists the compensation mechanisms that MSs can implement within the West Med MAP to obtain additional fishing days in 2023 (TOR 4). For TOR 1 a roadmap was discussed and proposed on how to organise the work on socio-economic assessments for the West Med MAP in 2023. The EWG suggests that here should be a three-step process: a scoping exercise (done with EWG 23- 01), a meeting with stakeholders in the middle of the year to discuss their perception of the socio-economic consequences of measures of the West Med MAP and the running of scenarios during EWG 23-11 with results from socio-economic assessments. The EWG notes that the modellers have only the five-day meeting in September to run scenarios. Therefore, it would be crucial for the success of the assessments that the 6 scenarios provided by DG Mare for the EWG 22-11 and with some adjustments for EWG 23-01 will not change for EWG 23-11. It is crucial because those scenarios are already implemented in the models and the implementation of new scenarios would take a lot of time. The EWG proposes to run a few additional scenarios with only one measures to separate impacts of certain measures from the six scenarios where a mixture of measures is included. This would hopefully allow to give an indication what additional efforts may be necessary to reach MSY (in 2025 but also beyond in case the objective is not reached by 2025) and when gains from the implementation of the West Med Plan could be expected. The EWG observes that modelers need to put in additional effort and resources to improve the models for an improved assessment of the West Med MAP. The models were not originally developed for the assessment of the West Med MAP and only cover parts of the area of the Western Mediterranean. Such an improvement of the models could also include work to provide longer-term socio-economic assessments of measures where modelers need to take additional assumptions into account. The EWG notes that it would be beneficial if modelers receive a basic list of assumptions for key economic variables before the EWG 23-11 meeting in September. In 2022, for example, the increased fuel costs were an important factor regarding the economic performance of the fleets. In 2023 fuel costs have decreased but there are other cost categories with a substantial increase. The EWG concludes that DG Mare should not change the 6 provided scenarios substantially before the EWG 23-11 meeting in September. This would allow the modelers to run the models during the meeting and provide the socio-economic results. The EWG concludes that STECF and DG Mare should further discuss how resources could be provided to modelers to improve the applied models. The EWG concludes that the chairs of EWG 23-01 and 23-11 will provide a list of assumptions for the implementation of the models regarding key variables for the socio-economic assessments (short- and long-term). For TOR 2 the EWG discussed what variables and indicators the applied models include and provide. From that discussion a list of indicators was developed for which modelers will be able to provide results in the EWG 23-11 report. The EWG concludes that a list of indicators is provided for which EWG 23-11 will present results in autumn 2023. For TOR 3 the EWG notes that new closure areas for 2023 were implemented only by Spain (EMU 1) (Orden APA/80/2023). All closures areas implemented under the West Med MAP are described to allow testing if their implementation would reduce the catches of juveniles and adults of the six target species of the MAP by 15-25%. The EWG notes that the methodology followed to prioritise, developing and updating closure areas based on their conservation value on the basis of existing closures, proposed closures from EWG 22-01 and new proposals developed by EWG 23-01 based on updated MEDISEH layers is similar to the one used during EWG 22- 01. Updated MEDISEH layers were used for priority species (ARA, MUT and HKE) in combination with old MEDISEH layers for other species and distribution maps of commercial effort from EWG 22-01. Calculation of the percentage of the trawlable GSA area closed to fishing is higher in EMU 1 than EMU 2, therefore the estimation of additional closure areas on top of the existing ones foccused on this management unit. Additional closure areas to test were based on persistence hotsposts from survey data and from areas of high effort in order to impact directly on the reduction of fishing mortality. The EWG notes that the exisiting and additional closures could be tested only in EMU 2 and GSA 7 as for GSA 1, 5 and 6 the extension of the spatially-explicit model ISIS-Fish is not complete yet and it is still limited to a single species (HKE). The EWG notes that closure areas in GSA 7 were tested with two different methods. A static method comparing effort distribution data before and after the closures implementation in 2020, and a dynamic method applying ISIS-Fish. The first method showed how the establishment of the spatio-temporal closure imposed a strong seasonal constraint to the fishing effort in the Gulf of Lions, and that the fishermen community responded quite well to the new rule, although vessels increased their fishing effort along the closure border, with a typical « fishing the line » pattern, especially in the fall. The second model showed that introducing an additional closure did not improve the rebuilding of the hake stock, while changing the closures from seasonal to permanent suggested the strongest effect. The EWG notes that in EMU 2 that temporal closures for the whole fleet reduce global effort while additional spatial closures increase effort towards coastal areas (depths
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- 2023
21. Using individual tracking data to validate the predictions of species distribution models
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Pinto, Cecilia, Thorburn, James A., Neat, Francis, Wright, Peter J., Wright, Serena, Scott, Beth E., Cornulier, Thomas, and Travis, Justin M. J.
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- 2016
22. Full-Length Single-Molecule Protein Fingerprinting
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Filius, Mike, Wee, Raman van, Lannoy, Carlos de, Westerlaken, Ilja, Li, Zeshi, Kim, Sung Hyun, Pinto, Cecilia de Agrela, Wu, Yunfei, Boons, Geert-Jan, Pabst, Martin, Ridder, Dick de, Joo, Chirlmin, Filius, Mike, Wee, Raman van, Lannoy, Carlos de, Westerlaken, Ilja, Li, Zeshi, Kim, Sung Hyun, Pinto, Cecilia de Agrela, Wu, Yunfei, Boons, Geert-Jan, Pabst, Martin, Ridder, Dick de, and Joo, Chirlmin
- Abstract
Proteins are the primary functional actors of the cell. Hence, their identification is pivotal to advance our understanding of cell biology and disease. Current protein analysis methods are of limited use for distinguishing proteoforms. In particular, mass spectrometric methods often provide only ambiguous information on post-translational modification sites, and sequences of co-existing modifications may not be resolved. Here we demonstrate FRET-based single-molecule protein fingerprinting to map the location of individual amino acids and a post-translational modification within single full-length protein molecules. Using an approach that relies on transient binding of fluorescently labeled DNA strands to probe the amino acids on a protein one by one we show that we can fingerprint intrinsically disordered proteins as well as folded globular proteins with sub-nanometer resolution. We anticipate that this technology will be used for proteoform identification in biological and translational research with ultimate sensitivity.
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- 2023
23. Full-Length Single-Molecule Protein Fingerprinting
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Afd Chemical Biology and Drug Discovery, Sub NMR Spectroscopy, Sub Chemical Biology and Drug Discovery, Chemical Biology and Drug Discovery, Filius, Mike, Wee, Raman van, Lannoy, Carlos de, Westerlaken, Ilja, Li, Zeshi, Kim, Sung Hyun, Pinto, Cecilia de Agrela, Wu, Yunfei, Boons, Geert-Jan, Pabst, Martin, Ridder, Dick de, Joo, Chirlmin, Afd Chemical Biology and Drug Discovery, Sub NMR Spectroscopy, Sub Chemical Biology and Drug Discovery, Chemical Biology and Drug Discovery, Filius, Mike, Wee, Raman van, Lannoy, Carlos de, Westerlaken, Ilja, Li, Zeshi, Kim, Sung Hyun, Pinto, Cecilia de Agrela, Wu, Yunfei, Boons, Geert-Jan, Pabst, Martin, Ridder, Dick de, and Joo, Chirlmin
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- 2023
24. Scientific, Technical and Economic Committee for Fisheries. (STECF) 72nd plenary report (STECF-PLEN-23-01)
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Bastardie, Francois, Borges, Lisa, Casey, John, Coll, Marta, Daskalov, Georgi, Döring, Ralf, Drouineau, Hilaire, Goti Aralucea, Leyre, Grati, Fabio, Hamon, Katell, Ibaibarriaga, Leire, Jardim, Ernesto, Jung, Armelle, Ligas, Alessandro, Mannini, Alessandro, Martín, Paloma, Moore, Claire, Motova-Surmava, Arina, Nielsen, Rasmus, Nimmegeers, Sofie, Nord, Jenny, Pinto, Cecilia, Prellezo, Raúl, Raid, Tiit, Rihan, Dominic, Sabatella, Evelina, Sampedro, Paz, Somarakis, Stylianos, Stransky, Christoph, Ulrich, Clara, Uriarte, Andrés, Valentinsson, Daniel, Van Hoof, Luc, Velasco Guevara, Francisco, Vrgoc, Nedo, Bastardie, Francois, Borges, Lisa, Casey, John, Coll, Marta, Daskalov, Georgi, Döring, Ralf, Drouineau, Hilaire, Goti Aralucea, Leyre, Grati, Fabio, Hamon, Katell, Ibaibarriaga, Leire, Jardim, Ernesto, Jung, Armelle, Ligas, Alessandro, Mannini, Alessandro, Martín, Paloma, Moore, Claire, Motova-Surmava, Arina, Nielsen, Rasmus, Nimmegeers, Sofie, Nord, Jenny, Pinto, Cecilia, Prellezo, Raúl, Raid, Tiit, Rihan, Dominic, Sabatella, Evelina, Sampedro, Paz, Somarakis, Stylianos, Stransky, Christoph, Ulrich, Clara, Uriarte, Andrés, Valentinsson, Daniel, Van Hoof, Luc, Velasco Guevara, Francisco, and Vrgoc, Nedo
- Abstract
Commission Decision of 25 February 2016 setting up a Scientific, Technical and Economic Committee for Fisheries, C(2016) 1084, OJ C 74, 26.2.2016, p. 4–10. The Commission may consult the group on any matter relating to marine and fisheries biology, fishing gear technology, fisheries economics, fisheries governance, ecosystem effects of fisheries, aquaculture or similar disciplines. The Scientific, Technical and Economic Committee for Fisheries held its 72 nd plenary from 20-24 March 2023.
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- 2023
25. Investigación interdisciplinaria en diálogo con pobladores isleñxs del Delta inferior del Paraná organizadxs en defensa de su territorio y sus modos de vida
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Glustein, Jazmín, primary, Bazylenko, Andrey, additional, Mordiero, Julieta, additional, Jatar, Lara, additional, Ostertag, Camila, additional, Larrandart, Sofía, additional, Sirolli, Horacio, additional, Falcón, María de los Ángeles, additional, Carrillo Pinto, Cecilia, additional, Saveika, Camila, additional, Borón, Carlos Ignacio, additional, and Do Campo, Margarita, additional
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- 2023
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26. Structural basis of membrane targeting and coatomer assembly by human GBP1
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Kuhm, Tanja, primary, de Agrela Pinto, Cecilia, additional, Gross, Luca, additional, Huber, Stefan T., additional, Taisne, Clémence, additional, Giannopoulou, Evdokia A., additional, Pardon, Els, additional, Steyaert, Jan, additional, Tans, Sander J., additional, and Jakobi, Arjen J., additional
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- 2023
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27. Range expansion of the Atlantic fish Zenopsis conchifer (Lowe, 1852), family Zeidae, in the western Mediterranean Sea
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PINTO, CECILIA, primary, ROPPO VALENTE, GIOVANNI, additional, RASORE, NICOLA, additional, OLMI, EDOARDO, additional, LANTERI, LUCA, additional, GARIBALDI, FULVIO, additional, VIVA, CLAUDIO, additional, NERI, ALESSANDRA, additional, MASSARO, ANDREA, additional, De CARLO, FRANCESCO, additional, LIGAS, ALESSANDRO, additional, and SARTOR, PAOLO, additional
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- 2023
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28. A swallow doesn’t make a summer: the case of Charybdis (Charybdis) feriata (Linnaeus, 1758) in the western Mediterranean Sea
- Author
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Pinto, Cecilia, primary, Lanteri, Luca, additional, Olmi, Edoardo, additional, Rasore, Nicola, additional, Valente, Giovanni, additional, and Garibaldi, Fulvio, additional
- Published
- 2023
- Full Text
- View/download PDF
29. Scientific, Technical and Economic Committee for Fisheries (STECF) – Stock Assessments: demersal stocks in the western Mediterranean Sea. (Version 1.2) (STECF-22-09)
- Author
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Simmonds, E.J., Mannini, Alessandro, Kupschus, Sven, Billet, Norbert, Bitetto, Isabella, Certain, Gregoire, Couve, Pablo, Farré, Marc, García, Encarni, Garriga Panisello, Mariona, Ligas, Alessandro, Mantopoulou Palouka, Danai, Martin, Paloma, Maynou, Francesc, Murenu, Matteo, Musumeci, Claudia, Orio, Alessandro, Pesci, Paola, Pierucci, Andrea, Pinto, Cecilia, Luis, José, Gil, Pérez, Sbrana, Mario, Simmonds, Edmund John, Mannini, Alessando, Kupschus, Sven, and STECF
- Subjects
Fsh stock assessment ,Management plans ,Fishery management ,Mediterranean fisheries ,Demersal fisheries - Abstract
Commission Decision of 25 February 2016 setting up a Scientific, Technical and Economic Committee for Fisheries, C(2016) 1084, OJ C 74, 26.2.2016, p. 4–10. The Commission may consult the group on any matter relating to marine and fisheries biology, fishing gear technology, fisheries economics, fisheries governance, ecosystem effects of fisheries, aquaculture or similar disciplines This report documents the outcomes of STECF Expert Working Group 22-09: 2022 stock assessments of demersal stocks in the western Mediterranean Sea from the meeting held remotely from 5th to 11th September 2022. A total of 20 fish stocks considered and 18 were fully evaluated. Two stocks had prior advice from 2021 with catch advice for 2022 and 2023, and this is reiterated here. The EWG reports age based assessments, target Fs, with short term forecasts for 15 of the remaining 18 stocks, of these 15, 12 were also analysed for biomass reference points. Catch advice for three stocks was based on ICES category three evaluations of biomass indices. The content of the report gives the STECF terms of reference; the basis of the evaluations; assessments, reference point calculations; summaries of state of stock and advised catch or F based on either the MSY approach for assessed stocks and category 3 based advice for those without assessments. The report contains the full stock assessment reports for the 15 assessments, the exploration of assessments and category 3 evaluations for the remaining three stocks. The report also contains the STECF observations and conclusions on the assessment report. These conclusions come from the STECF Plenary meeting November 2022. European Union Published Refereed
- Published
- 2022
30. Rapid Prediction of Multi-dimensional NMR Data Sets Using FANDAS
- Author
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Narasimhan, Siddarth, primary, Mance, Deni, additional, Pinto, Cecilia, additional, Weingarth, Markus, additional, Bonvin, Alexandre M. J. J., additional, and Baldus, Marc, additional
- Published
- 2017
- Full Text
- View/download PDF
31. Formation of the β-barrel assembly machinery complex in lipid bilayers as seen by solid-state NMR
- Author
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Pinto, Cecilia, Mance, Deni, Sinnige, Tessa, Daniëls, Mark, Weingarth, Markus, and Baldus, Marc
- Published
- 2018
- Full Text
- View/download PDF
32. Structural basis of antimicrobial membrane coat assembly by human GBP1
- Author
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Kuhm, Tanja, Taisne, Clémence, de Agrela Pinto, Cecilia, Gross, Luca, Giannopoulou, Evdokia A., Huber, Stefan T., Pardon, Els, Steyaert, Jan, Tans, Sander J., and Jakobi, Arjen J.
- Abstract
Guanylate-binding proteins (GBPs) are interferon-inducible guanosine triphosphate hydrolases (GTPases) mediating host defense against intracellular pathogens. Their antimicrobial activity hinges on their ability to self-associate and coat pathogen-associated compartments or cytosolic bacteria. Coat formation depends on GTPase activity but how nucleotide binding and hydrolysis prime coat formation remains unclear. Here, we report the cryo-electron microscopy structure of the full-length human GBP1 dimer in its guanine nucleotide-bound state and describe the molecular ultrastructure of the GBP1 coat on liposomes and bacterial lipopolysaccharide membranes. Conformational changes of the middle and GTPase effector domains expose the isoprenylated C terminus for membrane association. The α-helical middle domains form a parallel, crossover arrangement essential for coat formation and position the extended effector domain for intercalation into the lipopolysaccharide layer of gram-negative membranes. Nucleotide binding and hydrolysis create oligomeric scaffolds with contractile abilities that promote membrane extrusion and fragmentation. Our data offer a structural and mechanistic framework for understanding GBP1 effector functions in intracellular immunity.
- Published
- 2024
- Full Text
- View/download PDF
33. A cryogenic, coincident fluorescence, electron, and ion beam microscope
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Boltje, Daan B, primary, Hoogenboom, Jacob P, additional, Jakobi, Arjen J, additional, Jensen, Grant J, additional, Jonker, Caspar TH, additional, Kaag, Max J, additional, Koster, Abraham J, additional, Last, Mart GF, additional, de Agrela Pinto, Cecilia, additional, Plitzko, Jürgen M, additional, Raunser, Stefan, additional, Tacke, Sebastian, additional, Wang, Zhexin, additional, van der Wee, Ernest B, additional, Wepf, Roger, additional, and den Hoedt, Sander, additional
- Published
- 2022
- Full Text
- View/download PDF
34. Author response: A cryogenic, coincident fluorescence, electron, and ion beam microscope
- Author
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Boltje, Daan B, primary, Hoogenboom, Jacob P, additional, Jakobi, Arjen J, additional, Jensen, Grant J, additional, Jonker, Caspar TH, additional, Kaag, Max J, additional, Koster, Abraham J, additional, Last, Mart GF, additional, de Agrela Pinto, Cecilia, additional, Plitzko, Jürgen M, additional, Raunser, Stefan, additional, Tacke, Sebastian, additional, Wang, Zhexin, additional, van der Wee, Ernest B, additional, Wepf, Roger, additional, and den Hoedt, Sander, additional
- Published
- 2022
- Full Text
- View/download PDF
35. A cryogenic, coincident fluorescence, electron and ion beam microscope
- Author
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Boltje, Daan B., primary, Hoogenboom, Jacob P., additional, Jakobi, Arjen J., additional, Jensen, Grant J., additional, Jonker, Caspar T.H., additional, Kaag, Max J., additional, Koster, Abraham J., additional, Last, Mart G.F., additional, de Agrela Pinto, Cecilia, additional, Plitzko, Jürgen M., additional, Raunser, Stefan, additional, Tacke, Sebastian, additional, Wang, Zhexin, additional, van der Wee, Ernest B., additional, Wepf, Roger, additional, and den Hoedt, Sander, additional
- Published
- 2022
- Full Text
- View/download PDF
36. Three-Fluid Magnetohydrodynamics in Star Formation
- Author
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Pinto, Cecilia, Galli, Daniele, Tsinganos, Kanaris, editor, Ray, Tom, editor, and Stute, Matthias, editor
- Published
- 2009
- Full Text
- View/download PDF
37. Divide and Conquer: A Tailored Solid‐state NMR Approach to Study Large Membrane Protein Complexes
- Author
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Xiang, ShengQi, primary, Pinto, Cecilia, additional, and Baldus, Marc, additional
- Published
- 2022
- Full Text
- View/download PDF
38. Divide and Conquer: A Tailored Solid-state NMR Approach to Study Large Membrane Protein Complexes
- Author
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Sub NMR Spectroscopy, NMR Spectroscopy, Xiang, Sheng Qi, Pinto, Cecilia, Baldus, Marc, Sub NMR Spectroscopy, NMR Spectroscopy, Xiang, Sheng Qi, Pinto, Cecilia, and Baldus, Marc
- Published
- 2022
39. A cryogenic, coincident fluorescence, electron and ion beam microscope
- Author
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Boltje, Daan B., Hoogenboom, Jacob P., Jakobi, Arjen J., Jensen, Grant J., Jonker, Caspar T. H., Kaag, Max J., Koster, Abraham J., Last, Mart G. F., de Agrela Pinto, Cecilia, Plitzko, Jürgen M., Raunser, Stefan, Tacke, Sebastian, Wang, Zhexin, van der Wee, Ernest B., Wepf, Roger, den Hoedt, Sander, Boltje, Daan B., Hoogenboom, Jacob P., Jakobi, Arjen J., Jensen, Grant J., Jonker, Caspar T. H., Kaag, Max J., Koster, Abraham J., Last, Mart G. F., de Agrela Pinto, Cecilia, Plitzko, Jürgen M., Raunser, Stefan, Tacke, Sebastian, Wang, Zhexin, van der Wee, Ernest B., Wepf, Roger, and den Hoedt, Sander
- Abstract
Cryogenic electron tomography (cryo-ET) combined with sub-tomogram averaging, allows in-situ visualisation and structure determination of macromolecular complexes at sub-nanometre resolution. Cryogenic focused ion beam (cryo-FIB) micromachining is used to prepare a thin lamella-shaped sample out of a frozen-hydrated cell for cryo-ET imaging, but standard cryo-FIB fabrication is blind to the precise location of the structure or proteins of interest. Fluorescence-guided focused ion beam (FIB) milling at target locations requires multiple sample transfers prone to contamination, and relocation and registration accuracy is often insufficient for 3D targeting. Here, we present in-situ fluoresence microscopy-guided FIB fabrication of a frozen-hydrated lamella to solve this problem: we built a coincident 3-beam cryogenic correlative microscope by retrofitting a compact cryogenic microcooler, custom positioning stage, and an inverted widefield fluorescence microscope (FM) on an existing focused ion-beam scanning electron microscope (FIB-SEM). We show FM controlled targeting at every milling step in the lamella fabrication process, validated with transmission electron microscope (TEM) tomogram reconstructions of the target regions. The ability to check the lamella during and after the milling process results in a higher success rate in the fabrication process and will increase the throughput of fabrication for lamellae suitable for high-resolution imaging.
- Published
- 2022
40. Methods for supporting stock assessment in the Mediterranean (STECF-21-02)
- Author
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Simmonds, John, Bitetto, Isabella, Cikes Kec, Vanja, Guijarro, Beatriz, Isajlovic, Igor, Ligas, Alessandro, Mantopoulou Palouka, Danai, Mannini, Alessandro, Maynou, Francesc, Moutopoulos, Dimitrios, Murenu, Matteo, Musumeci, Claudia, Pierucci, Andrea, Pinto, Cecilia, Sala, Antonello, Sbrana, Mario, Ticina, Vjekoslav, Touloumis, Konstantinos, Tsikliras, Athanassios, Simmonds, John, Mannini, Alessandro, Pinto, Cecilia, Scientific, Technical and Economic Committee for Fisheries (STECF), and Pinto, Cecelia
- Subjects
Fisheries management ,Stock assessment ,Parameter Discipline - Fisheries and aquaculture - Abstract
Commission Decision of 25 February 2016 setting up a Scientific, Technical and Economic Committee for Fisheries, C(2016) 1084, OJ C 74, 26.2.2016, p. 4–10. The Commission may consult the group on any matter relating to marine and fisheries biology, fishing gear technology, fisheries economics, fisheries governance, ecosystem effects of fisheries, aquaculture or similar disciplines. This report, on methods for supporting stock assessment in the Mediterranean (STECF-21-02), addresses the data checking and preparation for stock assessment once the data has been submitted following the annual data calls. The report provides an overview of the data errors and quality control carried out on both commercial landings data and MEDITS survey data. The analyses reported also address the small fraction of commercial catch with sampling gaps, and how these are assigned appropriate length frequency distributions. The results of these check and assignments are provided by species, GSA and country. Quality checks were carried out on Medits data check consistency of the main reporting files and highlighting where data inconsistencies occurred. Additionally the total landings reported to the European Commission under the Black & Med-Sea data call, the Fisheries Independent Data call and the Annual Economic Report data call were compared at species aggregated to GSA. Some important differences were observed and these are reported. In addition the EWG reviewed a technical report on the sampling of commercial catch in the Greek Fisheries, the review and some suggested further work are included in this report. European Union, Joint Research Centre Published Refereed
- Published
- 2021
41. Mesoscale productivity fronts and local fishing opportunities in the European Seas
- Author
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Druon, Jean‐Noël, primary, Gascuel, Didier, additional, Gibin, Maurizio, additional, Zanzi, Antonella, additional, Fromentin, Jean‐Marc, additional, Colloca, Francesco, additional, Hélaouët, Pierre, additional, Coll, Marta, additional, Mannini, Alessandro, additional, Bluemel, Joanna K, additional, Piroddi, Chiara, additional, Bastardie, Francois, additional, Macias‐Moy, Diego, additional, Vasilakopoulos, Paraskevas, additional, Winker, Henning, additional, Serpetti, Natalia, additional, Guillen, Jordi, additional, Palialexis, Andreas, additional, Gras, Michaël, additional, Hekim, Zeynep, additional, Dubroca, Laurent, additional, Pinto, Cecilia, additional, Steenbeek, Jeroen, additional, and Martinsohn, Jann, additional
- Published
- 2021
- Full Text
- View/download PDF
42. Assessing the Potential of Catch-Only Models to Inform on the State of Global Fisheries and the UN’s SDGs
- Author
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Sharma, Rishi, primary, Winker, Henning, additional, Levontin, Polina, additional, Kell, Laurence, additional, Ovando, Dan, additional, Palomares, Maria L. D., additional, Pinto, Cecilia, additional, and Ye, Yimin, additional
- Published
- 2021
- Full Text
- View/download PDF
43. Mesoscale productivity fronts and local fishing opportunities in the European Seas
- Author
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Druon, Jean‐noël, Gascuel, Didier, Gibin, Maurizio, Zanzi, Antonella, Fromentin, Jean-marc, Colloca, Francesco, Hélaouët, Pierre, Coll, Marta, Mannini, Alessandro, Bluemel, Joanna K, Piroddi, Chiara, Bastardie, Francois, Macias‐moy, Diego, Vasilakopoulos, Paraskevas, Winker, Henning, Serpetti, Natalia, Guillen, Jordi, Palialexis, Andreas, Gras, Michaël, Hekim, Zeynep, Dubroca, Laurent, Pinto, Cecilia, Steenbeek, Jeroen, Martinsohn, Jann, Druon, Jean‐noël, Gascuel, Didier, Gibin, Maurizio, Zanzi, Antonella, Fromentin, Jean-marc, Colloca, Francesco, Hélaouët, Pierre, Coll, Marta, Mannini, Alessandro, Bluemel, Joanna K, Piroddi, Chiara, Bastardie, Francois, Macias‐moy, Diego, Vasilakopoulos, Paraskevas, Winker, Henning, Serpetti, Natalia, Guillen, Jordi, Palialexis, Andreas, Gras, Michaël, Hekim, Zeynep, Dubroca, Laurent, Pinto, Cecilia, Steenbeek, Jeroen, and Martinsohn, Jann
- Abstract
This study evaluates the relationship between both commercial and scientific spatial fisheries data and a new satellite-based estimate of potential fish production (Ocean Productivity available to Fish, OPFish) in the European Seas. To construct OPFish, we used productivity frontal features derived from chlorophyll-a horizontal gradients, which characterize 10%–20% of the global phytoplankton production that effectively fuels higher trophic levels. OPFish is relatively consistent with the spatial distribution of both pelagic and demersal fish landings and catches per unit of effort (LPUEs and CPUEs, respectively). An index of harvest relative to ocean productivity (HP index) is calculated by dividing these LPUEs or CPUEs with OPFish. The HP index reflects the intensity of fishing by gear type with regard to local fish production. Low HP levels indicate lower LPUEs or CPUEs than expected from oceanic production, suggesting over-exploitation, while high HP levels imply more sustainable fishing. HP allows comparing the production-dependent suitability of local fishing intensities. Our results from bottom trawl data highlight that over-exploitation of demersal species from the shelves is twice as high in the Mediterranean Sea than in the North-East Atlantic. The estimate of HP index by dominant pelagic and demersal gears suggests that midwater and bottom otter trawls are associated with the lowest and highest overfishing, respectively. The contrasts of fishing intensity at local scales captured by the HP index suggest that accounting for the local potential fish production can promote fisheries sustainability in the context of ecosystem-based fisheries management as required by international marine policies.
- Published
- 2021
- Full Text
- View/download PDF
44. Characterizing proteins in a native bacterial environment using solid-state NMR spectroscopy
- Author
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NMR Spectroscopy, Sub NMR Spectroscopy, Narasimhan, Siddarth, Pinto, Cecilia, Lucini Paioni, Alessandra, van der Zwan, Johan, Folkers, Gert E, Baldus, Marc, NMR Spectroscopy, Sub NMR Spectroscopy, Narasimhan, Siddarth, Pinto, Cecilia, Lucini Paioni, Alessandra, van der Zwan, Johan, Folkers, Gert E, and Baldus, Marc
- Published
- 2021
45. Mesoscale productivity fronts and local fishing opportunities in the European Seas
- Author
-
Druon, Jean-Noël, Gascuel, Didier, Gibin, Maurizio, Zanzi, Antonella, Fromentin, Jean-Marc, Colloca, Francesco, Hélaouët, Pierre, Coll, Marta, Mannini, Alessandro, Bluemel, Joanna K., Piroddi, Chiara, Bastardie, Francois, Macias-Moy, Diego, Vasilakopoulos, Paraskevas, Winker, Henning, Serpetti, Natalia, Guillen, Jordi, Palialexis, Andreas, Gras, Michaël, Hekim, Zeynep, Dubroca, Laurent, Pinto, Cecilia, Steenbeek, Jeroen, Martinsohn, Jann, Druon, Jean-Noël, Gascuel, Didier, Gibin, Maurizio, Zanzi, Antonella, Fromentin, Jean-Marc, Colloca, Francesco, Hélaouët, Pierre, Coll, Marta, Mannini, Alessandro, Bluemel, Joanna K., Piroddi, Chiara, Bastardie, Francois, Macias-Moy, Diego, Vasilakopoulos, Paraskevas, Winker, Henning, Serpetti, Natalia, Guillen, Jordi, Palialexis, Andreas, Gras, Michaël, Hekim, Zeynep, Dubroca, Laurent, Pinto, Cecilia, Steenbeek, Jeroen, and Martinsohn, Jann
- Abstract
This study evaluates the relationship between both commercial and scientific spatial fisheries data and a new satellite-based estimate of potential fish production (Ocean Productivity available to Fish, OPFish) in the European Seas. To construct OPFish, we used productivity frontal features derived from chlorophyll-a horizontal gradients, which characterize 10%–20% of the global phytoplankton production that effectively fuels higher trophic levels. OPFish is relatively consistent with the spatial distribution of both pelagic and demersal fish landings and catches per unit of effort (LPUEs and CPUEs, respectively). An index of harvest relative to ocean productivity (HP index) is calculated by dividing these LPUEs or CPUEs with OPFish. The HP index reflects the intensity of fishing by gear type with regard to local fish production. Low HP levels indicate lower LPUEs or CPUEs than expected from oceanic production, suggesting over-exploitation, while high HP levels imply more sustainable fishing. HP allows comparing the production-dependent suitability of local fishing intensities. Our results from bottom trawl data highlight that over-exploitation of demersal species from the shelves is twice as high in the Mediterranean Sea than in the North-East Atlantic. The estimate of HP index by dominant pelagic and demersal gears suggests that midwater and bottom otter trawls are associated with the lowest and highest overfishing, respectively. The contrasts of fishing intensity at local scales captured by the HP index suggest that accounting for the local potential fish production can promote fisheries sustainability in the context of ecosystem-based fisheries management as required by international marine policies.
- Published
- 2021
46. Mesoscale productivity fronts and local fishing opportunities in the European Seas
- Author
-
Agencia Estatal de Investigación (España), Druon, Jean-Noël, Gascuel, Didier, Gibin, Maurizio, Zanzi, Antonella, Fromentin, Jean-Marc, Colloca, Francesco, Hélaouët, Pierre, Coll, Marta, Mannini, Alessandro, Bluemel, Joanna K., Piroddi, Chiara, Bastardie, François, Macías, Diego, Vasilakopoulos, Paraskevas, Winker, Henning, Serpetti, Natalia, Guillen, Jordi, Palialexis, Andreas, Gras, Michaël, Hekim, Zeynep, Dubroca, Laurent, Pinto, Cecilia, Steenbeek, Jeroen, Martinsohn, Jann, Agencia Estatal de Investigación (España), Druon, Jean-Noël, Gascuel, Didier, Gibin, Maurizio, Zanzi, Antonella, Fromentin, Jean-Marc, Colloca, Francesco, Hélaouët, Pierre, Coll, Marta, Mannini, Alessandro, Bluemel, Joanna K., Piroddi, Chiara, Bastardie, François, Macías, Diego, Vasilakopoulos, Paraskevas, Winker, Henning, Serpetti, Natalia, Guillen, Jordi, Palialexis, Andreas, Gras, Michaël, Hekim, Zeynep, Dubroca, Laurent, Pinto, Cecilia, Steenbeek, Jeroen, and Martinsohn, Jann
- Abstract
This study evaluates the relationship between both commercial and scientific spatial fisheries data and a new satellite-based estimate of potential fish production (Ocean Productivity available to Fish, OPFish) in the European Seas. To construct OPFish, we used productivity frontal features derived from chlorophyll-a horizontal gradients, which characterize 10%–20% of the global phytoplankton production that effectively fuels higher trophic levels. OPFish is relatively consistent with the spatial distribution of both pelagic and demersal fish landings and catches per unit of effort (LPUEs and CPUEs, respectively). An index of harvest relative to ocean productivity (HP index) is calculated by dividing these LPUEs or CPUEs with OPFish. The HP index reflects the intensity of fishing by gear type with regard to local fish production. Low HP levels indicate lower LPUEs or CPUEs than expected from oceanic production, suggesting over-exploitation, while high HP levels imply more sustainable fishing. HP allows comparing the production-dependent suitability of local fishing intensities. Our results from bottom trawl data highlight that over-exploitation of demersal species from the shelves is twice as high in the Mediterranean Sea than in the North-East Atlantic. The estimate of HP index by dominant pelagic and demersal gears suggests that midwater and bottom otter trawls are associated with the lowest and highest overfishing, respectively. The contrasts of fishing intensity at local scales captured by the HP index suggest that accounting for the local potential fish production can promote fisheries sustainability in the context of ecosystem-based fisheries management as required by international marine policies.
- Published
- 2021
47. Three-Fluid Magnetohydrodynamics in Star Formation
- Author
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Pinto, Cecilia, primary and Galli, Daniele, additional
- Published
- 2009
- Full Text
- View/download PDF
48. “The Elephant in the Room”: Exploring Natural Mortality Uncertainty in Statistical Catch at Age Models
- Author
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Mannini, Alessandro, primary, Pinto, Cecilia, additional, Konrad, Christoph, additional, Vasilakopoulos, Paraskevas, additional, and Winker, Henning, additional
- Published
- 2020
- Full Text
- View/download PDF
49. Selectivity metrics for fisheries management and advice
- Author
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Vasilakopoulos, Paraskevas, primary, Jardim, Ernesto, additional, Konrad, Christoph, additional, Rihan, Dominic, additional, Mannini, Alessandro, additional, Pinto, Cecilia, additional, Casey, John, additional, Mosqueira, Iago, additional, and O’Neill, Finbarr G., additional
- Published
- 2020
- Full Text
- View/download PDF
50. Workshop on guidelines and methods for the evaluation of rebuilding plans (WKREBUILD)
- Author
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Kempf, Alexander, Benson, Ashleen, Beauchamp, Brittany, Pinto, Cecilia, Sparrevohn, Claus Reedtz, Lordan, Colm, Miller, David, van Helmond, Edwin, Mosegaard, Henrik, Benoít, Hugues, Coull, Kenny, Wise, Laura, Payne, Mark, Pastoors, Martin, Gras, Michael, Wall Andersen, Michael, Campbell, Neil, MacDonald, Paul, Levontin, Polina, Döring, Ralf, Methot, Richard D., Millar, Sarah, Mackinson, Steven, Gröhsler, Tomas, Bartolino, Valerio, Trijoulet, Vanessa, and Ye, Yimin
- Abstract
The Workshop on guidelines and methods for the evaluation of rebuilding plans (WKREBUILD) chaired by Vanessa Trijoulet (Denmark) and Martin Pastoors (Netherlands) met from 24 to 28 February 2020. The workshop attracted 27 participants from the US, Canada, Europe and FAO. When stocks are estimated to be below Blim1 and there is no perceived possibility of rebuilding above Blim within the time-frame of a short-term forecast, ICES has regularly recommended zero catch in combination with the development of a rebuilding plan. A review was carried out on the international experience on the development, evaluation and implementation of rebuilding plans for fisheries management in the Northeast Atlantic and in other fora around the world. In the Northeast Atlantic, rebuilding plans have been implemented in the past (e.g. the cod recovery plans of the early 2000s) but ICES has played a limited role in evaluating the performance of such recovery plans and does not have the tools or criteria to evaluate such plans. Recently, when a rebuilding plan for herring in 6.a 7.bc was submitted to ICES for evaluation, ICES refrained from providing such an evaluation. In the US and Canadian approaches, the legal framework determines the triggering and required elements of rebuilding plans. Such a legal imperative does not exist in the Northeast Atlantic. Nevertheless, the US and Canadian experiences provided useful elements that could be included in establishing ICES approach to rebuilding plans. Several case studies were presented on potential tools for the evaluation of rebuilding plans. Particular attention was given to evaluating options for harvest control rule options of such a plan. The tools focused mostly on short to medium term explorations of the probability of achieving a rebuilding of stocks. Because rebuilding plan evaluations need to be ready and available at short-notice when required, it was concluded that relatively standardized tools (i.e. packages or compiled code) to carry out such evaluations would be preferable over custommade evaluation tools. In addition, certain modelling considerations were highlighted as important such as realistic assumptions of productivity, uncertainty, bias in assessments and implementation error and the possibility of estimating the probability of achieving a rebuilding of stocks.Criteria for the acceptability of rebuilding plans will require an agreed Limit Reference Point (LRP) for initiating a rebuilding plan, definition of targets for fishing mortality or stock biomass, time-frames and the acceptable probabilities whether the rebuilding targets have been achieved. All of these should take into account realistic levels of uncertainty and being consistent with international best (scientific) practices. Although it was recognized that Blim would be the most likely candidate LRP triggering a rebuilding plan, the current approach in ICES for the determination of Blim was questioned during the workshop because it requires a more or less subjective classification of the stock-recruitment pairs into different types. In other regions, the LRP is often set as a certain proportion of the SSB at maximum sustainable yield (BMSY), e.g. 40% BMSY. If changes in productivity have been experienced in recent years at these are taken into account when estimating MSY reference points, the proportion of BMSY approach would likely lead to greater changes in the estimated value of LRP than the current ICES procedures used to estimate Blim, which rely on stock-recruitment pairs or definition of the lowest observed biomass (Bloss). This could have a large impact on the rebuilding target for stocks that experience changes in productivity regimes. Some concerns were raised regarding the often small distance between Blim and MSY Btrigger2 reference points for ICES stocks in comparison to the distance between trigger and limit in other jurisdictions. MSY Btrigger could therefore represent a late trigger to start decreasing fishing mortality when SSB is decreasing. The workshop recommended a future workshop on the revision of the procedure to estimate reference points within the ICES framework.An estimate of the minimum time (TMIN) by which rebuilding may be expected to be achieved, could be calculated by assuming zero catch and should be used as baseline for comparison with other rebuilding scenarios. The maximum time for rebuilding in the US and New Zealand is set to TMAX = 2 * TMIN or to TMIN plus one generation time1 (average length of time between when an individual is born and the birth of its offspring NRC (2014)). While the workshop did not arrive at an overall agreement on a default value for TMAX, it was suggested that TMAX = 2 * TMIN could be explored as a potential bounding on the rebuilding period, even though this should be subject to scientific analysis of potential effects on the stock in question. The workshop generated a guidance table summarizing the best practices for evaluation of rebuilding plans against the potential criteria of acceptability. The guidance table includes elements such as estimation of reference points, time-frames for rebuilding, rebuilding targets, handling uncertainties and bias, probability of achieving rebuilding targets and visualizing results. The workshop recommended that a follow-up workshop (WKREBUILD2) be organized for testing the guidelines with actual test cases, with the aim of defining more specific criteria and guidelines, i.e. learning by doing. Some of the elements that were discussed in the workshop but that have not (yet) entered the guidelines for evaluation of rebuilding plans are socio-economic trade-offs (e.g. between fast and slow rebuilding), mixed fisheries aspects (e.g. unavoidable bycatch due to mixed fisheries) and elements in rebuilding plans other than the HCR part (e.g. monitoring to improve the knowledge base). Most of the discussion at WKREBUILD was centred on stocks with analytical assessments (Category 1+2). Identifying when a data limited stock is in need of rebuilding (or has rebuilt) and how to evaluate rebuilding plan options for such stocks would likely require a separate process.
- Published
- 2020
- Full Text
- View/download PDF
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