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The evolution of NO2, considered as a proxy for air pollution, was analyzed to evaluate the impact of the first lockdown (17 March–10 May 2020) over the Île-de-France region (Paris and surroundings). Tropospheric NO2 columns measured by two UV-Visible Système d'Analyse par Observation Zénithale (SAOZ) spectrometers were analyzed to compare the evolution of NO2 between urban and suburban sites during the lockdown. The urban site is the observation platform QualAir (48∘50′ N / 2∘21′ E) at the Sorbonne University Pierre and Marie Curie Campus in the center of Paris. The suburban site is located at Guyancourt (48∘46′N / 2∘03′E), Versailles Saint-Quentin-en-Yvelines University, 24 km southwest of Paris. Tropospheric NO2 columns above Paris and Guyancourt have shown similar values during the whole lockdown period from March to May 2020. A decade of data sets were filtered to consider air masses at both sites with similar meteorological conditions. The median NO2 columns and the surface measurements of Airparif (Air Quality Observatory in Île de France) during the lockdown period in 2020 were compared to the extrapolated values estimated from a linear trend analysis for the 2011–2019 period at each station. Negative NO2 trends of −1.5 Pmolec. cm−2 yr−1 (∼ −6.3 % yr−1) are observed from the columns, and trends of −2.2 µg m−3 yr−1 (∼ −3.6 % yr−1) are observed from the surface concentration. The negative anomaly in tropospheric columns in 2020 attributed to the lockdown (and related emission reductions) was found to be 56 % at Paris and 46 % at Guyancourt, respectively. A similar anomaly was found in the data of surface concentrations, amounting to 53 % and 28 % at the urban and suburban sites, accordingly.

In September 2016, 36 spectrometers from 24 institutes measured a number of key atmospheric pollutants for a period of 17 d during the Second Cabauw Intercomparison campaign for Nitrogen Dioxide measuring Instruments (CINDI-2) that took place at Cabauw, the Netherlands (51.97∘ N, 4.93∘ E). We report on the outcome of the formal semi-blind intercomparison exercise, which was held under the umbrella of the Network for the Detection of Atmospheric Composition Change (NDACC) and the European Space Agency (ESA). The three major goals of CINDI-2 were (1) to characterise and better understand the differences between a large number of multi-axis differential optical absorption spectroscopy (MAX-DOAS) and zenith-sky DOAS instruments and analysis methods, (2) to define a robust methodology for performance assessment of all participating instruments, and (3) to contribute to a harmonisation of the measurement settings and retrieval methods. This, in turn, creates the capability to produce consistent high-quality ground-based data sets, which are an essential requirement to generate reliable long-term measurement time series suitable for trend analysis and satellite data validation. The data products investigated during the semi-blind intercomparison are slant columns of nitrogen dioxide (NO2), the oxygen collision complex (O4) and ozone (O3) measured in the UV and visible wavelength region, formaldehyde (HCHO) in the UV spectral region, and NO2 in an additional (smaller) wavelength range in the visible region. The campaign design and implementation processes are discussed in detail including the measurement protocol, calibration procedures and slant column retrieval settings. Strong emphasis was put on the careful alignment and synchronisation of the measurement systems, resulting in a unique set of measurements made under highly comparable air mass conditions. The CINDI-2 data sets were investigated using a regression analysis of the slant columns measured by each instrument and for each of the target data products. The slope and intercept of the regression analysis respectively quantify the mean systematic bias and offset of the individual data sets against the selected reference (which is obtained from the median of either all data sets or a subset), and the rms error provides an estimate of the measurement noise or dispersion. These three criteria are examined and for each of the parameters and each of the data products, performance thresholds are set and applied to all the measurements. The approach presented here has been developed based on heritage from previous intercomparison exercises. It introduces a quantitative assessment of the consistency between all the participating instruments for the MAX-DOAS and zenith-sky DOAS techniques.

As the second year of the COVID-19 pandemic begins, it remains clear that a massive increase in the ability to test for SARS-CoV-2 infections in a myriad of settings is critical to controlling the pandemic and to preparing for future outbreaks. The current gold standard for molecular diagnostics is the polymerase chain reaction (PCR), but the extraordinary and unmet demand for testing in a variety of environments means that both complementary and supplementary testing solutions are still needed. This review highlights the role that loop-mediated isothermal amplification (LAMP) has had in filling this global testing need, providing a faster and easier means of testing, and what it can do for future applications, pathogens, and the preparation for future outbreaks. This review describes the current state of the art for research of LAMP-based SARS-CoV-2 testing, as well as its implications for other pathogens and testing. The authors represent the global LAMP (gLAMP) Consortium, an international research collective, which has regularly met to share their experiences on LAMP deployment and best practices; sections are devoted to all aspects of LAMP testing, including preanalytic sample processing, target amplification, and amplicon detection, then the hardware and software required for deployment are discussed, and finally, a summary of the current regulatory landscape is provided. Included as well are a series of first-person accounts of LAMP method development and deployment. The final discussion section provides the reader with a distillation of the most validated testing methods and their paths to implementation. This review also aims to provide practical information and insight for a range of audiences: for a research audience, to help accelerate research through sharing of best practices; for an implementation audience, to help get testing up and running quickly; and for a public health, clinical, and policy audience, to help convey the breadth of the effect that LAMP methods have to offer.

The evolution of NO2, considered as proxy for air pollution, was analyzed to evaluate the impact of 1st lockdown (March 17th – May 10th 2020) over île-de-France region (Paris and surroundings). Tropospheric NO2 columns measured by two UV-Visible SAOZ spectrometers were analyzed to compare the evolution of NO2 between urban and suburban sites during the lockdown. The urban site is the observation platform QUALAIR (48°50' N/2°21' E) on the Pierre et Marie Curie Campus of Sorbonne University in the center of Paris. The suburban site is located at Guyancourt (48°46' N/2°03' E), University of Versailles Saint Quentin, 24 km south-west of Paris. Tropospheric NO2 columns above Paris and Guyancourt have shown similar values during the whole lockdown period from March to May 2020. One decade datasets were filtered to consider air masses at both sites with similar meteorological conditions. The median NO2 columns, as well as the surface measurements of AIPARIF (Air Quality Observatory in Ile de France) during the lockdown period in 2020 were compared to the extrapolated values estimated from a linear trend analysis for the 2011–2019 period at each station. Negative NO2 trends of −1.5 Pmolec cm−2 yr−1 (~−6.3 % yr−1) are observed from the columns and of −2.2 μg m−3 yr−1 (~−3.6 % yr−1) from the surface concentration. The negative anomaly in tropospheric columns in 2020 attributed to lockdown (and related emission reductions) was found to be 56 % at Paris and 46 % at Guyancourt, respectively. Similar anomaly was found in the data of surface concentrations, amounting for 53 % and 28 % at the urban and suburban sites, accordingly.

N95 filtering facepiece respirators (FFRs) are essential for the protection of healthcare professionals and other high-risk groups against Coronavirus Disease of 2019 (COVID-19). In response to shortages in FFRs during the ongoing COVID-19 pandemic, the Food and Drug Administration issued an Emergency Use Authorization permitting FFR decontamination and reuse. However, although industrial decontamination services are available at some large institutions, FFR decontamination is not widely accessible.To be effective, FFR decontamination must 1) inactivate the virus; 2) preserve FFR integrity, specifically fit and filtering capability; and 3) be non-toxic and safe. Here we identify and test at-home heat-based methods for FFR decontamination that meet these requirements using common household appliances. Our results identify potential protocols for simple and accessible FFR decontamination, while also highlighting unsuitable methods that may jeopardize FFR integrity.One sentence summarySurvey of at-home methods for N95 respirator decontamination using heat and evaluation of their effects on N95 respirator integrity.

International audience; The evolution of NO2 , considered as proxy for air pollution, was analyzed to evaluate the impact of 1 st lockdown 10 (March 17 th-May 10 th 2020) over île-de-France region (Paris and surroundings). Tropospheric NO2 columns measured by two UV-Visible SAOZ spectrometers were analyzed to compare the evolution of NO 2 between urban and suburban sites during the lockdown. The urban site is the observation platform QUALAIR (48°50'N/2°21'E) on the Pierre et Marie Curie Campus of Sorbonne University in the center of Paris. The suburban site is located at Guyancourt (48°46'N/2°03'E), University of Versailles Saint Quentin, 24 km southwest of Paris. Tropospheric NO2 columns above Paris and Guyancourt 15 have shown similar values during the whole lockdown period from March to May 2020. One decade datasets were filtered to consider air masses at both sites with similar meteorological conditions. The median NO2 columns, as well as the surface measurements of AIPARIF (Air Quality Observatory in Ile de France) during the lockdown period in 2020 were compared to the extrapolated values estimated from a linear trend analysis for the 2011-2019 period at each station. Negative NO 2 trends of-1.5 Pmolec cm-2 yr-1 (~-6.3 % yr-1) are observed from the columns and of-2.2 µg m-3 yr-1 (~-3.6 % yr-1) from the surface 20 concentration. The negative anomaly in tropospheric columns in 2020 attributed to lockdown (and related emission reductions) was found to be 56% at Paris and 46% at Guyancourt, respectively. Similar anomaly was found in the data of surface concentrations, amounting for 53% and 28% at the urban and suburban sites, accordingly.

Despite the development of effective vaccines against SARS-CoV-2, epidemiological control of the virus is still challenging due to slow vaccine rollouts, incomplete vaccine protection to current and emerging variants, and unwillingness to get vaccinated. Therefore, frequent testing of individuals to identify early SARS-CoV-2 infections, contact-tracing and isolation strategies remain crucial to mitigate viral spread. Here, we describe WHotLAMP, a rapid molecular test to detect SARS-CoV-2 in saliva. WHotLAMP is simple to use, highly sensitive (3.6 viral RNA copies per microliter of saliva) and specific, as well as inexpensive, making it ideal for frequent screening. Moreover, WHotLAMP does not require toxic chemicals or specialized equipment and thus can be performed in point-of-care settings, and may also be adapted for resource-limited environments or home use. While applied here to SARS-CoV-2, WHotLAMP can be modified to detect other pathogens, making it adaptable for other diagnostic assays, including for use in future outbreaks.

In September 2016, 36 spectrometers from 24 institutes measured a number of key atmospheric pollutants for a period of 17 d during the Second Cabauw Intercomparison campaign for Nitrogen Dioxide measuring Instruments (CINDI-2) that took place at Cabauw, the Netherlands (51.97 degrees N, 4.93 degrees E). We report on the outcome of the formal semi-blind intercomparison exercise, which was held under the umbrella of the Network for the Detection of Atmospheric Composition Change (NDACC) and the European Space Agency (ESA). The three major goals of CINDI-2 were (1) to characterise and better understand the differences between a large number of multi-axis differential optical absorption spectroscopy (MAX-DOAS) and zenith-sky DOAS instruments and analysis methods, (2) to define a robust methodology for performance assessment of all participating instruments, and (3) to contribute to a harmonisation of the measurement settings and retrieval methods. This, in turn, creates the capability to produce consistent high-quality ground-based data sets, which are an essential requirement to generate reliable long-term measurement time series suitable for trend analysis and satellite data validation. The data products investigated during the semi-blind intercomparison are slant columns of nitrogen dioxide (NO2), the oxygen collision complex (O-4) and ozone (O-3) measured in the UV and visible wavelength region, formaldehyde (HCHO) in the UV spectral region, and NO2 in an additional (smaller) wavelength range in the visible region. The campaign design and implementation processes are discussed in detail including the measurement protocol, calibration procedures and slant column retrieval settings. Strong emphasis was put on the careful alignment and synchronisation of the measurement systems, resulting in a unique set of measurements made under highly comparable air mass conditions. The CINDI-2 data sets were investigated using a regression analysis of the slant columns measured by each instrument and for each of the target data products. The slope and intercept of the regression analysis respectively quantify the mean systematic bias and offset of the individual data sets against the selected reference (which is obtained from the median of either all data sets or a subset), and the rms error provides an estimate of the measurement noise or dispersion. These three criteria are examined and for each of the parameters and each of the data products, performance thresholds are set and applied to all the measurements. The approach presented here has been developed based on heritage from previous intercomparison exercises. It introduces a quantitative assessment of the consistency between all the participating instruments for the MAX-DOAS and zenith-sky DOAS techniques. Netherlands Space Office (NSO); ESA through the CINDI-2 (ESA) project [4000118533/16/I-Sbo]; ESA through the FRM4DOAS (ESA) project [4000118181/16/I-EF]; EU 7th Framework Programme QA4ECV projectEuropean Union (EU) [607405]; Austrian Science Fund (FWF)Austrian Science Fund (FWF) [I 2296-N29]; Canadian Space Agency (AVATARS project); Natural Sciences and Engineering Research Council (PAHA project); Canada Foundation for InnovationCanada Foundation for Innovation; UVAS ("Ultraviolet and Visible Atmospheric Sounder") projects SEOSAT/INGENIO [ESP2015-71299-R]; DFG project RAPSODI [PL 193/17-1]; Centre National de la Recherche Scientifique (CNRS)Centre National de la Recherche Scientifique (CNRS); Centre National d'Etudes Spatiales (CNES)Centre National D'etudes Spatiales; National funding project HELADO [CTM2013-41311-P]; National funding project AVATAR [CGL2014-55230-R]; Russian Science FoundationRussian Science Foundation (RSF) [16-17-10275]; Russian Foundation for Basic ResearchRussian Foundation for Basic Research (RFBR) [16-05-01062, 18-35-00682]; ACTRIS-2 (H2020 grant) [654109]; NASA's Atmospheric Composition ProgramNational Aeronautics & Space Administration (NASA) [NASA-16-NUP2016-0001]; US National Science FoundationNational Science Foundation (NSF) [AGS-1620530]; NASANational Aeronautics & Space Administration (NASA); University of Bremen; DFG Research Center/Cluster of Excellence "The Ocean in the Earth System-MARUM"German Research Foundation (DFG); University of Bremen Institutional Strategy of the DFG; Luftblick through the ESA Pandonia Project; NASA Pandora Project at the Goddard Space Flight Center under NASA Headquarters' Tropospheric Composition Program CINDI-2 received funding from the Netherlands Space Office (NSO). Funding for this study was provided by ESA through the CINDI-2 (ESA contract no. 4000118533/16/I-Sbo) and FRM4DOAS (ESA contract no. 4000118181/16/I-EF) projects and partly within the EU 7th Framework Programme QA4ECV project (grant agreement no. 607405). The BOKU MAX-DOAS instrument was funded and the participation of Stefan F. Schreier was supported by the Austrian Science Fund (FWF): I 2296-N29. The participation of the University of Toronto team was supported by the Canadian Space Agency (through the AVATARS project) and the Natural Sciences and Engineering Research Council (through the PAHA project). The instrument was primarily funded by the Canada Foundation for Innovation and is usually operated at the Polar Environment Atmospheric Research Laboratory (PEARL) by the Canadian Network for the Detection of Atmospheric Change (CANDAC). Funding for CISC was provided by the UVAS ("Ultraviolet and Visible Atmospheric Sounder") projects SEOSAT/INGENIO, ESP2015-71299-R, MINECO-FEDER and UE. The activities of the IUP-Heidelberg were supported by the DFG project RAPSODI (grant no. PL 193/17-1). SAOZ and Mini-SAOZ instruments are supported by the Centre National de la Recherche Scientifique (CNRS) and the Centre National d'Etudes Spatiales (CNES). INTA recognises support from the National funding projects HELADO (CTM2013-41311-P) and AVATAR (CGL2014-55230-R). AMOIAP recognises support from the Russian Science Foundation (grant no. 16-17-10275) and the Russian Foundation for Basic Research (grant nos. 16-05-01062 and 18-35-00682). Ka L. Chan received transnational access funding from ACTRIS-2 (H2020 grant agreement no. 654109). Rainer Volkamer recognises funding from NASA's Atmospheric Composition Program (NASA-16-NUP2016-0001) and the US National Science Foundation (award AGS-1620530). Henning Finkenzeller is the recipient of a NASA graduate fellowship. Mihalis Vrekoussis recognises support from the University of Bremen and the DFG Research Center/Cluster of Excellence "The Ocean in the Earth System-MARUM". Financial support through the University of Bremen Institutional Strategy in the framework of the DFG Excellence Initiative is gratefully appreciated for Anja Schonhardt. Pandora instrument deployment was supported by Luftblick through the ESA Pandonia Project and NASA Pandora Project at the Goddard Space Flight Center under NASA Headquarters' Tropospheric Composition Program. The article processing charges for this open-access publication were covered by BK Scientific.

In September 2016, 36 spectrometers from 24 institutes measured a number of key atmospheric pollutants for a period of 17 d during the Second Cabauw Intercomparison campaign for Nitrogen Dioxide measuring Instruments (CINDI-2) that took place at Cabauw, the Netherlands (51.97∘ N, 4.93∘ E). We report on the outcome of the formal semi-blind intercomparison exercise, which was held under the umbrella of the Network for the Detection of Atmospheric Composition Change (NDACC) and the European Space Agency (ESA). The three major goals of CINDI-2 were (1) to characterise and better understand the differences between a large number of multi-axis differential optical absorption spectroscopy (MAX-DOAS) and zenith-sky DOAS instruments and analysis methods, (2) to define a robust methodology for performance assessment of all participating instruments, and (3) to contribute to a harmonisation of the measurement settings and retrieval methods. This, in turn, creates the capability to produce consistent high-quality ground-based data sets, which are an essential requirement to generate reliable long-term measurement time series suitable for trend analysis and satellite data validation. The data products investigated during the semi-blind intercomparison are slant columns of nitrogen dioxide (NO2), the oxygen collision complex (O4) and ozone (O3) measured in the UV and visible wavelength region, formaldehyde (HCHO) in the UV spectral region, and NO2 in an additional (smaller) wavelength range in the visible region. The campaign design and implementation processes are discussed in detail including the measurement protocol, calibration procedures and slant column retrieval settings. Strong emphasis was put on the careful alignment and synchronisation of the measurement systems, resulting in a unique set of measurements made under highly comparable air mass conditions. The CINDI-2 data sets were investigated using a regression analysis of the slant columns measured by each instrument and for each of the target data products. The slope and intercept of the regression analysis respectively quantify the mean systematic bias and offset of the individual data sets against the selected reference (which is obtained from the median of either all data sets or a subset), and the rms error provides an estimate of the measurement noise or dispersion. These three criteria are examined and for each of the parameters and each of the data products, performance thresholds are set and applied to all the measurements. The approach presented here has been developed based on heritage from previous intercomparison exercises. It introduces a quantitative assessment of the consistency between all the participating instruments for the MAX-DOAS and zenith-sky DOAS techniques.

40 pags., 22 figs., 13 tabs., In September 2016, 36 spectrometers from 24 institutes measured a number of key atmospheric pollutants for a period of 17¿d during the Second Cabauw Intercomparison campaign for Nitrogen Dioxide measuring Instruments (CINDI-2) that took place at Cabauw, the Netherlands (51.97¿¿N, 4.93¿¿E). We report on the outcome of the formal semi-blind intercomparison exercise, which was held under the umbrella of the Network for the Detection of Atmospheric Composition Change (NDACC) and the European Space Agency (ESA). The three major goals of CINDI-2 were (1) to characterise and better understand the differences between a large number of multi-axis differential optical absorption spectroscopy (MAX-DOAS) and zenith-sky DOAS instruments and analysis methods, (2) to define a robust methodology for performance assessment of all participating instruments, and (3) to contribute to a harmonisation of the measurement settings and retrieval methods. This, in turn, creates the capability to produce consistent high-quality ground-based data sets, which are an essential requirement to generate reliable long-term measurement time series suitable for trend analysis and satellite data validation. The data products investigated during the semi-blind intercomparison are slant columns of nitrogen dioxide (NO2), the oxygen collision complex (O4) and ozone (O3) measured in the UV and visible wavelength region, formaldehyde (HCHO) in the UV spectral region, and NO2 in an additional (smaller) wavelength range in the visible region. The campaign design and implementation processes are discussed in detail including the measurement protocol, calibration procedures and slant column retrieval settings. Strong emphasis was put on the careful alignment and synchronisation of the measurement systems, resulting in a unique set of measurements made under highly comparable air mass conditions. The CINDI-2 data sets were investigated using a regression analysis of the slant columns measured by each instrument and for each of the target data products. The slope and intercept of the regression analysis respectively quantify the mean systematic bias and offset of the individual data sets against the selected reference (which is obtained from the median of either all data sets or a subset), and the rms error provides an estimate of the measurement noise or dispersion. These three criteria are examined and for each of the parameters and each of the data products, performance thresholds are set and applied to all the measurements. The approach presented here has been developed based on heritage from previous intercomparison exercises. It introduces a quantitative assessment of the consistency between all the participating instruments for the MAX-DOAS and zenith-sky DOAS techniques., CINDI-2 received funding from the Netherlands Space Office (NSO). Funding for this study was provided by ESA through the CINDI-2 (ESA contract no. 4000118533/16/ISbo) and FRM4DOAS (ESA contract no. 4000118181/16/I-EF) projects and partly within the EU 7th Framework Programme QA4ECV project (grant agreement no. 607405). The BOKU MAX-DOAS instrument was funded and the participation of Stefan F. Schreier was supported by the Austrian Science Fund (FWF): I 2296-N29. The participation of the University of Toronto team was supported by the Canadian Space Agency (through the AVATARS project) and the Natural Sciences and Engineering Research Council (through the PAHA project). The instrument was primarily funded by the Canada Foundation for Innovation and is usually operated at the Polar Environment Atmospheric Research Laboratory (PEARL) by the Canadian Network for the Detection of Atmospheric Change (CANDAC). Funding for CISC was provided by the UVAS (“Ultraviolet and Visible Atmospheric Sounder”) projects SEOSAT/INGENIO, ESP2015-71299- R, MINECO-FEDER and UE. The activities of the IUP-Heidelberg were supported by the DFG project RAPSODI (grant no. PL 193/17-1). SAOZ and Mini-SAOZ instruments are supported by the Centre National de la Recherche Scientifique (CNRS) and the Centre National d’Etudes Spatiales (CNES). INTA recognises support from the National funding projects HELADO (CTM2013-41311-P) and AVATAR (CGL2014-55230-R). AMOIAP recognises support from the Russian Science Foundation (grant no. 16-17-10275) and the Russian Foundation for Basic Research (grant nos. 16-05- 01062 and 18-35-00682). Ka L. Chan received transnational access funding from ACTRIS-2 (H2020 grant agreement no. 654109). Rainer Volkamer recognises funding from NASA’s Atmospheric Composition Program (NASA-16-NUP2016-0001) and the US National Science Foundation (award AGS-1620530). Henning Finkenzeller is the recipient of a NASA graduate fellowship. Mihalis Vrekoussis recognises support from the University of Bremen and the DFG Research Center/Cluster of Excellence “The Ocean in the Earth System-MARUM”. Financial support through the University of Bremen Institutional Strategy in the framework of the DFG Excellence Initiative is gratefully appreciated for Anja Schönhardt. Pandora instrument deployment was supported by Luftblick through the ESA Pandonia Project and NASA Pandora Project at the Goddard Space Flight Center under NASA Headquarters’ Tropospheric Composition Program. The article processing charges for this open-access publication were covered by BK Scientific.

A major challenge in evolutionary and developmental biology is to map the genetic causes of morphological differences between species and determine how these genetic variants exert their effects on developing tissues. Classic case studies have demonstrated that morphological changes are often associated with variation in regulatory DNA that controls gene expression for transcription factors or signaling molecules, but it has proven challenging to dissect the genetic basis of interspecific differences in the size and shape of multicellular 3-dimensional organs. We used high-resolution imaging to investigate the cellular basis of morphological diversification in the posterior lobe, a genital structure specific to the Drosophila melanogaster clade that varies in size and shape between Drosophila simulans and Drosophila mauritiana, two species can generate viable hybrid offspring. By tracking the development of the pupal epithelium that forms the posterior lobe, we found that the increased area of the Drosophila simulans lobe compared to Drosophila mauritiana results from a larger number of cells committed to lobe fate, as well as a subsequent tapering process that occurs in Drosophila mauritiana. Cells in both species adopt extreme apical dimensions, with some cells Drosophila mauritiana reaching an apical surface area of 2-3 square microns. We used lectin staining to correlate some of these differences in epithelial remodeling with the apical extracellular matrix (ECM), which targets a larger number of cells in Drosophila simulans and hybrids compared with Drosophila melanogaster and has been previously shown to underlie lobe development in Drosophila melanogaster. Finally, we measured similar differences in the gene expression pattern of dumpy, an ECM component, which suggests that this diverged developmental process is at least partially controlled at the level of gene regulation. This work suggests that extracellular forces contribute to morphological diversification, specifically that changes in dumpy gene regulation may alter the number of cells committed to the posterior lobe between species.

Mechanisms that suppress recombination are known to help maintain species barriers by preventing the breakup of coadapted gene combinations. The sympatric butterfly species Heliconius melpomene and Heliconius cydno are separated by many strong barriers, but the species still hybridize infrequently in the wild, and around 40% of the genome is influenced by introgression. We tested the hypothesis that genetic barriers between the species are maintained by inversions or other mechanisms that reduce between-species recombination rate. We constructed fine-scale recombination maps for Panamanian populations of both species and their hybrids to directly measure recombination rate within and between species, and generated long sequence reads to detect inversions. We find no evidence for a systematic reduction in recombination rates in F1 hybrids, and also no evidence for inversions longer than 50 kb that might be involved in generating or maintaining species barriers. This suggests that mechanisms leading to global or local reduction in recombination do not play a significant role in the maintenance of species barriers between H. melpomene and H. cydno.

Terpenes, a group of structurally diverse compounds, are the biggest class of secondary metabolites. While the biosynthesis of terpenes by enzymes known as terpene synthases (TPSs) has been described in plants and microorganisms, few TPSs have been identified in insects, despite the presence of terpenes in multiple insect species. Indeed, in many insect species, it remains unclear whether terpenes are sequestered from plants or biosynthesisedde novo. No homologs of plant TPSs have been found in insect genomes, though insect TPSs with an independent evolutionary origin have been found in Hemiptera and Coleoptera. In the butterflyHeliconius melpomene, the monoterpene (E)-β-ocimene acts as an anti-aphrodisiac pheromone, where it is transferred during mating from males to females to avoid re-mating by deterring males. To date only one insect monoterpene synthase has been described, inIps pini(Coleoptera), and is a multifunctional TPS and isoprenyl diphosphate synthase (IDS). Here, we combine linkage mapping and expression studies to identify candidate genes involved in the biosynthesis of (E)-β-ocimene. We confirm thatH. melpomenehas two enzymes that exhibit TPS activity, and one of these, HMEL037106g1 is able to synthesise (E)-β-ocimenein vitro. Unlike the enzyme inIps pini, these enzymes only exhibit residual IDS activity, suggesting they are more specialised TPSs, akin to those found in plants. Phylogenetic analysis shows that these enzymes are unrelated to previously described plant and insect TPSs. The distinct evolutionary origin of TPSs in Lepidoptera suggests that they have evolved multiple times in insects.Significance statementTerpenes are a diverse class of natural compounds, used by both plants and animals for a variety of functions, including chemical communication. In insects it is often unclear whether they are synthesisedde novoor sequestered from plants. Some plants and insects have converged to use the same compounds. For instance, (E)-β-ocimene is a common component of floral scent and is also used by the butterflyHeliconius melpomeneas an anti-aphrodisiac pheromone. We describe two novel terpene synthases, one of which synthesises (E)-β-ocimene inH. melpomene, unrelated not only to plant enzymes but also other recently identified insect terpene synthases. This provides the first evidence that the ability to synthesise terpenes has arisen multiple times independently within the insects.

Predicting how species will respond to selection pressures requires understanding the factors that constrain their evolution. We use genome engineering of Drosophila to investigate constraints on the repeated evolution of unrelated herbivorous insects to toxic cardiac glycosides, which primarily occurs via a small subset of possible functionally-relevant substitutions to Na+,K+-ATPase. Surprisingly, we find that frequently observed adaptive substitutions at two sites, 111 and 122, are lethal when homozygous and adult heterozygotes exhibit dominant neural dysfunction. We identify a phylogenetically correlated substitution, A119S, that partially ameliorates the deleterious effects of substitutions at 111 and 122. Despite contributing little to cardiac glycoside-insensitivity in vitro, A119S, like substitutions at 111 and 122, substantially increases adult survivorship upon cardiac glycoside exposure. Our results demonstrate the importance of epistasis in constraining adaptive paths. Moreover, by revealing distinct effects of substitutions in vitro and in vivo, our results underscore the importance of evaluating the fitness of adaptive substitutions and their interactions in whole organisms.

Relatório de Estágio do Mestrado em Ensino de Educação Física nos Ensinos Básico e Secundário apresentado à Faculdade de Ciências do Desporto e Educação Física O presente documento foi realizado no âmbito do Estágio Pedagógico, unidade curricular inserida no plano de estudos do Mestrado em Ensino de Educação Física nos Ensinos Básico e Secundário, da Faculdade de Ciências do Desporto e Educação Física da Universidade de Coimbra. Serão aqui retratadas as experiências, dificuldades e estratégias para as combater, de uma forma descritiva e coerente. Este relatório está estruturado em três grandes capítulos. O primeiro aborda uma contextualização da prática desenvolvida, descrevendo as expectativas iniciais e uma caraterização do meio escolar onde foi realizado este Estágio Pedagógico, isto é, a Escola Básica 2º e 3º Ciclos com Secundário José Falcão de Miranda do Corvo, junto da turma B do 7.º ano. O segundo capítulo proporciona uma análise reflexiva sobre a prática pedagógica, abordando dimensões como o planeamento, a realização e a avaliação. Por fim, o capítulo três é dedicado ao aprofundamento do Tema-Problema - “Relação entre o desempenho na Educação Física e a prática desportiva extracurricular”. Este projeto de investigação pretende analisar o impacto que a prática desportiva regular pode ter nas classificações da disciplina de Educação Física. Com uma amostra de 74 alunos, pertencentes ao 7º ano de escolaridade, foi analisado esse impacto com base na carga semanal de prática desportiva extracurricular e nas classificações obtidas, nesta disciplina, em dois anos letivos diferentes. Foram ainda analisadas as diferenças entre géneros no que diz respeito à carga semanal de prática desportiva extracurricular e as modalidades escolhidas pelos alunos. This document, carried out as part of the Teacher Training, is part of the study plan of the Master's Degree in Physical Education Teaching in Basic and Secondary Education, in Faculty of Sports Sciences and Physical Education, University of Coimbra. In this report, the experiences, difficulties and strategies to combat them will be described in a descriptive and coherent way.The report is structured in three major chapters. The first chapter approaches a contextualization of the developed practice, describing the initial expectations and a characterization of the school environment where this Teacher Training took place, Basic School 2nd and 3rd Cycles with Secondary José Falcão de Miranda do Corvo next to the B class of the 7th grade. The second chapter provides a reflective analysis of pedagogical practice, addressing dimensions such as planning, realization and evaluation. Finally, chapter three explores the Problem-Theme "Relationship between performance in Physical Education and extracurricular sports practice". This research project intends to analyze the impact that regular sports practice can have on the classifications of Physical Education. With a sample of 74 students belonging to the 7th grade, this impact was analyzed based on the weekly load of extracurricular sports practice and the classifications, obtained in this discipline, in two different school years. We also analyzed the differences between genders regarding the weekly load of extracurricular sports practice and the modalities chosen by the students.

In September 2016, 36 spectrometers from 24 institutes measured a number of key atmospheric pollutants for a period of 17 days during the Second Cabauw Intercomparison campaign for Nitrogen Dioxide measuring Instruments (CINDI-2) that took place at Cabauw, The Netherlands (51.97° N, 4.93° E). We report on the outcome of the formal semi-blind intercomparison exercise, which was held under the umbrella of the Network for the Detection of Atmospheric Composition Change (NDACC) and the European Space Agency (ESA). The three major goals of CINDI-2 were to characterise and better understand the differences between a large number of Multi-AXis Differential Optical Absorption Spectroscopy (MAX-DOAS) and zenith-sky DOAS instruments and analysis methods, to discuss the performance of the various types of instruments and to contribute to a harmonisation of the measurement settings and retrieval methods. This, in turn, creates the capability to produce consistent high-quality ground-based data sets, which are an essential requirement to generate reliable long-term measurement time series suitable for trend analysis and satellite data validation. The data products investigated during the semi-blind intercomparison are slant columns of nitrogen dioxide (NO2), the oxygen dimer (O4) and ozone (O3) measured in the UV and visible wavelength region, formaldehyde (HCHO) in the UV spectral region and NO2 in an additional (smaller) wavelength range in the visible. The campaign design and implementation processes are discussed in detail including the measurement protocol, calibration procedures and slant column retrieval settings. Strong emphasis was put on the careful alignment and synchronisation of the measurement systems, resulting in an unprecedented set of measurements made under highly comparable air mass conditions. The CINDI-2 data sets were investigated using a regression analysis of the slant columns measured by each instrument and for each of the target data products. The slope and intercept of the regression analysis respectively quantify the mean systematic bias and offset of the individual data sets against the reference, and the RMS error provides an estimate of the measurement noise or dispersion. These three criteria are examined and for each of the parameters and each of the data products, performance thresholds are set and applied to all the measurements. The approach presented here has been developed based on heritage from previous intercomparison exercises. It introduces a quantitative assessment of the measurement performance of all the participating instruments for the MAX-DOAS and zenith-sky DOAS techniques.